AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307780 MtrunA17_Chr4g0035761 85.607 535 42 6 1 514 1 521 0.0 870
Msa0307780 MtrunA17_Chr4g0035791 74.206 535 100 7 1 514 1 518 0.0 757
Msa0307780 MtrunA17_Chr4g0035811 74.206 535 95 7 1 514 34 546 0.0 756
Msa0307780 MtrunA17_Chr4g0035741 61.163 533 157 7 3 514 17 520 0.0 620
Msa0307780 MtrunA17_Chr4g0035751 60.526 532 166 8 1 514 1 506 0.0 606
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307780 AT2G21340.1 62.471 437 132 5 99 514 105 530 0.0 549
Msa0307780 AT2G21340.2 62.014 437 131 6 99 514 105 527 0.0 539
Msa0307780 AT4G39030.1 54.215 522 197 8 25 515 4 514 1.59e-179 516

Find 121 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGATTGCTGGGGCTGCT+TGG 0.217868 2_4:-938016 Msa0307780:CDS
CTGGACCTGCTATTGGTCTT+TGG 0.222999 2_4:-940526 Msa0307780:CDS
CTACTGTTCACAATGTTATT+TGG 0.227670 2_4:-939201 Msa0307780:CDS
TGGGATTGCTGGGGCTGCTT+GGG 0.250299 2_4:-938015 Msa0307780:CDS
AAGGAAATTGTATTGTTTAC+TGG 0.254805 2_4:-940545 Msa0307780:CDS
ATTTGTCTCATTGGTGTTAA+AGG 0.256466 2_4:-937583 Msa0307780:intron
TCAATTGAACTTGCTGCTTT+AGG 0.260915 2_4:-940449 Msa0307780:intron
ATCATTCTGTGCAGATATTT+AGG 0.264256 2_4:-938041 Msa0307780:CDS
GCTGTTGCTAGTATTATAAA+TGG 0.276859 2_4:-938074 Msa0307780:CDS
GTCGATTGCTACGTCGAATA+TGG 0.279146 2_4:-940280 Msa0307780:CDS
AAACTTCGCTGATTTGTTCT+TGG 0.286580 2_4:+940639 None:intergenic
TTCAAGTGCTCTTGTACTAT+TGG 0.286743 2_4:-935737 Msa0307780:intron
TGCTCCTGTATTTGTCTCAT+TGG 0.309006 2_4:-937592 Msa0307780:CDS
TACTTGTTGAGCAGAATATA+TGG 0.313969 2_4:-940577 Msa0307780:CDS
TAGCAACAGCCAAAGCCTTC+AGG 0.320978 2_4:+938087 None:intergenic
TTGGGGACCCCTGAAGGCTT+TGG 0.326543 2_4:-938096 Msa0307780:CDS
TGCTACTGCACTTGCTAAAC+AGG 0.330445 2_4:-940256 Msa0307780:intron
CTCATTGATACTGCTGTTGT+TGG 0.336581 2_4:-940482 Msa0307780:CDS
TTGTTTACTGGACCTGCTAT+TGG 0.337810 2_4:-940533 Msa0307780:CDS
TTTCCCTTGTTGGATTTCAA+TGG 0.339549 2_4:-935596 Msa0307780:CDS
CCCTCCAGGCCGATAGTTGC+AGG 0.339778 2_4:+936616 None:intergenic
CATAAATGATTGAGCAGTTT+GGG 0.341891 2_4:+937252 None:intergenic
GATTGAGCAGTTTGGGAGAT+AGG 0.343850 2_4:+937259 None:intergenic
GCATAAATGATTGAGCAGTT+TGG 0.352223 2_4:+937251 None:intergenic
ATCCCTTCTCGATTAGAGTT+TGG 0.363989 2_4:+937676 None:intergenic
TATTTAGGCTATGGGATTGC+TGG 0.365085 2_4:-938026 Msa0307780:CDS
GCTGATTTGTTCTTGGTGTT+CGG 0.365633 2_4:+940646 None:intergenic
CTCTAATCGAGAAGGGATAC+AGG 0.383002 2_4:-937671 Msa0307780:CDS
TTAACTATTGGAGCTATACT+TGG 0.389308 2_4:-936930 Msa0307780:CDS
CGGCCTGGAGGGAACATTGC+TGG 0.389943 2_4:-936605 Msa0307780:intron
TTTGAAGTACGCGAGGTGTT+AGG 0.390174 2_4:+940690 None:intergenic
TTCCCTTGTTGGATTTCAAT+GGG 0.393428 2_4:-935595 Msa0307780:CDS
GTTGGAACATATTTGTTCCT+TGG 0.395430 2_4:-936891 Msa0307780:CDS
GCTATTGGTCTTTGGTTATG+TGG 0.403668 2_4:-940518 Msa0307780:CDS
TGGGGCTGCTTGGGCTACAT+TGG 0.406685 2_4:-938006 Msa0307780:CDS
TCTTGGTATGAAAGACTCTT+GGG 0.418828 2_4:-938114 Msa0307780:CDS
CTGTGCAGATATTTAGGCTA+TGG 0.424595 2_4:-938035 Msa0307780:CDS
GTCTTGGTATGAAAGACTCT+TGG 0.428478 2_4:-938115 Msa0307780:CDS
TAATGCGTTGGTTAGTTGAA+TGG 0.431478 2_4:+940747 None:intergenic
GGAACCCGGAGCGACGGTTC+CGG 0.433638 2_4:+940711 None:intergenic
ATGGATAACGGTGGTGGTGG+TGG 0.433882 2_4:+940766 None:intergenic
GCTAGTATTATAAATGGAAT+TGG 0.434795 2_4:-938068 Msa0307780:CDS
CAGATCTTACGAAGCAGATA+TGG 0.438064 2_4:-935636 Msa0307780:CDS
GATAACGGTGGTGGTGGTGG+TGG 0.438145 2_4:+940769 None:intergenic
GACAGGCTAGGTCGCTTCTA+AGG 0.443810 2_4:-936959 Msa0307780:intron
CTTCTCCATTCCTTCGGGGA+AGG 0.446414 2_4:-937640 Msa0307780:CDS
ACCTGATCAGATGGTCATCC+AGG 0.449016 2_4:-936848 Msa0307780:CDS
GTACGGAGTAAATCGGAGTT+TGG 0.455255 2_4:-937218 Msa0307780:CDS
CGAGCCGGAACCGTCGCTCC+GGG 0.456395 2_4:-940715 Msa0307780:CDS
TCGAGCCGGAACCGTCGCTC+CGG 0.456638 2_4:-940716 Msa0307780:CDS
GAGGTAAGTGGTGGTTTGAA+TGG 0.461112 2_4:+940807 None:intergenic
TCCTGGATGACCATCTGATC+AGG 0.465745 2_4:+936847 None:intergenic
TGTGCAGATATTTAGGCTAT+GGG 0.478585 2_4:-938034 Msa0307780:CDS
AGCAACAGCCAAAGCCTTCA+GGG 0.480715 2_4:+938088 None:intergenic
GATTGAAATGCAGTGAGAAT+TGG 0.486132 2_4:+940867 None:intergenic
AGGTAAGTGGTGGTTTGAAT+GGG 0.491800 2_4:+940808 None:intergenic
TGATCAGGTGTAAATGTGTA+GGG 0.493363 2_4:+936862 None:intergenic
AGTTGATGTACGGAGTAAAT+CGG 0.494109 2_4:-937225 Msa0307780:CDS
AGCACAAGAAGAAGAAATGA+AGG 0.503848 2_4:-940603 Msa0307780:CDS
GACACCTGCAACTATCGGCC+TGG 0.506576 2_4:-936620 Msa0307780:CDS
ATTTAGGCTATGGGATTGCT+GGG 0.507725 2_4:-938025 Msa0307780:CDS
CATTGGATTAGTATGTGGCT+TGG 0.515356 2_4:-939229 Msa0307780:CDS
AACACCAATGAGACAAATAC+AGG 0.516398 2_4:+937588 None:intergenic
AGACTCTTGGGGACCCCTGA+AGG 0.519624 2_4:-938102 Msa0307780:CDS
TGAATGGATAACGGTGGTGG+TGG 0.521123 2_4:+940763 None:intergenic
CACATTTACACCTGATCAGA+TGG 0.521609 2_4:-936857 Msa0307780:CDS
AAATTCCTTCCCCGAAGGAA+TGG 0.521817 2_4:+937635 None:intergenic
GAATATATGGATTCAGATGA+AGG 0.523724 2_4:-940564 Msa0307780:CDS
TGCAGCTAATACTTATGTCC+AGG 0.527820 2_4:-939003 Msa0307780:intron
TTTATAAGTTTGTCAACGAG+TGG 0.530943 2_4:-935769 Msa0307780:CDS
GGTACTAAATGTACATTTGT+CGG 0.536146 2_4:+939026 None:intergenic
GGAGCGACGGTTCCGGCTCG+AGG 0.539090 2_4:+940718 None:intergenic
CTGATCAGGTGTAAATGTGT+AGG 0.543118 2_4:+936861 None:intergenic
TAACTATTGGAGCTATACTT+GGG 0.544847 2_4:-936929 Msa0307780:CDS
TTTATGCCTGAGTTGATGTA+CGG 0.549209 2_4:-937235 Msa0307780:CDS
AGTAAATCGGAGTTTGGTAA+AGG 0.549929 2_4:-937212 Msa0307780:intron
TTTACGTTGTGCACAGTATG+TGG 0.550044 2_4:-937286 Msa0307780:CDS
TTGAATGGGAAATGAGGTTG+CGG 0.561056 2_4:+940822 None:intergenic
ATCAATGGGTACACATGCAA+CGG 0.561868 2_4:-937441 Msa0307780:CDS
ATACCAGCAATGTTCCCTCC+AGG 0.568305 2_4:+936602 None:intergenic
TATGTTTGTGTAGGATAGGG+AGG 0.568560 2_4:-939283 Msa0307780:intron
TTTGGTGCGACAACGCTCGC+AGG 0.573276 2_4:-939183 Msa0307780:intron
GATATGGTCTGCAAGGCTGT+TGG 0.575901 2_4:-935620 Msa0307780:CDS
CGAAGCAGATATGGTCTGCA+AGG 0.576131 2_4:-935627 Msa0307780:CDS
TTGGTTAGTTGAATGGATAA+CGG 0.577567 2_4:+940754 None:intergenic
GAAGGGAATGAAGAGGTAAG+TGG 0.581475 2_4:+940795 None:intergenic
GAGCCAAACTCTAATCGAGA+AGG 0.583150 2_4:-937679 Msa0307780:CDS
CCTGCAACTATCGGCCTGGA+GGG 0.591317 2_4:-936616 Msa0307780:CDS
TGGACATAAGTATTAGCTGC+AGG 0.592382 2_4:+939005 None:intergenic
GACAGAAATTCCTTCCCCGA+AGG 0.593713 2_4:+937630 None:intergenic
AGTTGAATGGATAACGGTGG+TGG 0.599371 2_4:+940760 None:intergenic
TACGCGAGGTGTTAGGAACC+CGG 0.602468 2_4:+940697 None:intergenic
TCGAGGATGTAATAATGCGT+TGG 0.602752 2_4:+940735 None:intergenic
GGATTTCAATGGGTAAGACT+CGG 0.603129 2_4:-935585 Msa0307780:CDS
GTGTTAGGAACCCGGAGCGA+CGG 0.606908 2_4:+940705 None:intergenic
GTGTGATCATGCAGATGCAT+AGG 0.607243 2_4:-936675 Msa0307780:intron
AGCCAAACTCTAATCGAGAA+GGG 0.607743 2_4:-937678 Msa0307780:CDS
GGTGGTTTGAATGGGAAATG+AGG 0.608115 2_4:+940816 None:intergenic
GGGAATGAAGAGGTAAGTGG+TGG 0.609113 2_4:+940798 None:intergenic
GATACTGCTGTTGTTGGTCA+AGG 0.613645 2_4:-940476 Msa0307780:CDS
GTGGTGACACCTGCAACTAT+CGG 0.619034 2_4:-936625 Msa0307780:CDS
ACCTGCAACTATCGGCCTGG+AGG 0.621277 2_4:-936617 Msa0307780:CDS
CTTCCCCGAAGGAATGGAGA+AGG 0.623971 2_4:+937641 None:intergenic
TTTAGGCTATGGGATTGCTG+GGG 0.629860 2_4:-938024 Msa0307780:CDS
TTTCCTTCTCCATTCCTTCG+GGG 0.631065 2_4:-937644 Msa0307780:CDS
TTTACTCCGTACATCAACTC+AGG 0.639144 2_4:+937229 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 2_4:+940521 None:intergenic
TCTAATCGAGAAGGGATACA+GGG 0.642267 2_4:-937670 Msa0307780:CDS
AAATGAGGTTGCGGTTAACG+AGG 0.654288 2_4:+940831 None:intergenic
GCATTATTACATCCTCGAGC+CGG 0.659051 2_4:-940730 Msa0307780:CDS
GATCAGGTGTAAATGTGTAG+GGG 0.673218 2_4:+936863 None:intergenic
TTACCCATTGAAATCCAACA+AGG 0.673307 2_4:+935592 None:intergenic
GCAACAGCCAAAGCCTTCAG+GGG 0.673686 2_4:+938089 None:intergenic
AATGTGTAGGGGAATAACCA+AGG 0.674285 2_4:+936874 None:intergenic
CTTGGTATGAAAGACTCTTG+GGG 0.674911 2_4:-938113 Msa0307780:CDS
GATAACCAATGGAAATACAG+AGG 0.680543 2_4:-936757 Msa0307780:intron
TACCCATTGAAATCCAACAA+GGG 0.682977 2_4:+935593 None:intergenic
GTTAGTTGAATGGATAACGG+TGG 0.692567 2_4:+940757 None:intergenic
GTGGTGAGAAGGGAATGAAG+AGG 0.698925 2_4:+940788 None:intergenic
TGATCAGATGGTCATCCAGG+AGG 0.731780 2_4:-936845 Msa0307780:intron
GTATCAATGAGACTCATCAA+CGG 0.734956 2_4:+940494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTCTTTTTCTTA+TGG - chr2_4:936508-936527 Msa0307780:intron 10.0%
!!! TTTTATTTTCTTTTTCTTAT+GGG - chr2_4:936509-936528 Msa0307780:intron 10.0%
!!! TCTTTTAATAGTAAATATAA+AGG - chr2_4:937571-937590 Msa0307780:intron 10.0%
!! CAATATATAATATAAATTCA+GGG + chr2_4:939457-939476 None:intergenic 10.0%
!! TCAATATATAATATAAATTC+AGG + chr2_4:939458-939477 None:intergenic 10.0%
!! AATTTATATTATATATTGAC+AGG - chr2_4:939459-939478 Msa0307780:intron 10.0%
!!! TTGTAAATATTCTAAGTTTT+TGG - chr2_4:936340-936359 Msa0307780:intron 15.0%
!! ATTCATACAATAAAATAAGA+CGG - chr2_4:937022-937041 Msa0307780:intron 15.0%
!! AGAAATCATAAAACAATTTA+TGG - chr2_4:937520-937539 Msa0307780:intron 15.0%
!!! CATTTTCAATTAAATATAAG+AGG + chr2_4:938121-938140 None:intergenic 15.0%
!! ATTAGTAATATCATAACTAT+TGG - chr2_4:938252-938271 Msa0307780:intron 15.0%
!! TTAGTAATATCATAACTATT+GGG - chr2_4:938253-938272 Msa0307780:intron 15.0%
!! TAATAAGTAATTATTGTTGT+AGG - chr2_4:938495-938514 Msa0307780:intron 15.0%
!! TATTTCAGTAAATTGAAAAT+AGG + chr2_4:938665-938684 None:intergenic 15.0%
!!! AAAATATTTTGTTCTATTTG+TGG - chr2_4:938881-938900 Msa0307780:intron 15.0%
!! ATGTTTGGATTTATTATTTA+AGG - chr2_4:939873-939892 Msa0307780:intron 15.0%
!! ATTTATTATTGAACAATTTC+TGG - chr2_4:940095-940114 Msa0307780:intron 15.0%
!!! ATATAACAAGTGTTATTTTA+AGG - chr2_4:940594-940613 Msa0307780:CDS 15.0%
!!! TTTTGTATACCATAAGAAAA+GGG + chr2_4:936219-936238 None:intergenic 20.0%
!!! ATTTTGTATACCATAAGAAA+AGG + chr2_4:936220-936239 None:intergenic 20.0%
!!! TTTTCTATCCAATAAGAAAA+GGG + chr2_4:936553-936572 None:intergenic 20.0%
!!! ATTTTCTATCCAATAAGAAA+AGG + chr2_4:936554-936573 None:intergenic 20.0%
!! AAATTAATGATATAGAAGAG+AGG - chr2_4:936652-936671 Msa0307780:CDS 20.0%
!! AATAATATCCAAAAGTTTGA+TGG + chr2_4:937052-937071 None:intergenic 20.0%
!!! ACAATCTTAATTTGAATTGA+AGG + chr2_4:937479-937498 None:intergenic 20.0%
!! AGTAAATATAAAGGTTTGTA+TGG - chr2_4:937580-937599 Msa0307780:intron 20.0%
!! ACATATATTGAAATTGATCA+AGG - chr2_4:937669-937688 Msa0307780:CDS 20.0%
!! CATATATTGAAATTGATCAA+GGG - chr2_4:937670-937689 Msa0307780:CDS 20.0%
!! TGAACATATGTTTATAAGTA+GGG - chr2_4:937866-937885 Msa0307780:intron 20.0%
!! GTCAGTTTAAATAAAAATTC+AGG + chr2_4:938162-938181 None:intergenic 20.0%
!! AGTTTATCCTTTAAATGTAA+CGG - chr2_4:938919-938938 Msa0307780:intron 20.0%
!! TGAATATACATAACAATGTA+TGG + chr2_4:939428-939447 None:intergenic 20.0%
!!! AATAAACAGGTTTGAAATTA+AGG - chr2_4:939710-939729 Msa0307780:intron 20.0%
!! AAGTATTATGAATTTATGAG+AGG + chr2_4:940456-940475 None:intergenic 20.0%
!! AATTCATAATACTTCATAAG+AGG - chr2_4:940462-940481 Msa0307780:CDS 20.0%
!! AAATTGCGTTACATAAAAAT+TGG + chr2_4:940771-940790 None:intergenic 20.0%
! AAGGAAATTGTATTGTTTAC+TGG - chr2_4:935890-935909 Msa0307780:intron 25.0%
! TAATGTATATGTGATGTGTA+TGG - chr2_4:936061-936080 Msa0307780:intron 25.0%
!!! TACTGTTTTTTGCGATTATT+TGG - chr2_4:936113-936132 Msa0307780:intron 25.0%
!!! ACTGTTTTTTGCGATTATTT+GGG - chr2_4:936114-936133 Msa0307780:intron 25.0%
! TTTGTATACCATAAGAAAAG+GGG + chr2_4:936218-936237 None:intergenic 25.0%
! TCCATTAACTTATCTGTTAT+CGG + chr2_4:936474-936493 None:intergenic 25.0%
!! TTTTATTCCCCTTTTCTTAT+TGG - chr2_4:936542-936561 Msa0307780:intron 25.0%
! TTTCTATCCAATAAGAAAAG+GGG + chr2_4:936552-936571 None:intergenic 25.0%
! ATATTTACTCATGAAAAGCA+GGG + chr2_4:937135-937154 None:intergenic 25.0%
! ATGAGTAAATATGTTTGTGT+AGG - chr2_4:937143-937162 Msa0307780:intron 25.0%
! TAAATATGTTTGTGTAGGAT+AGG - chr2_4:937148-937167 Msa0307780:intron 25.0%
! AAATATGTTTGTGTAGGATA+GGG - chr2_4:937149-937168 Msa0307780:intron 25.0%
! ATTACTGTTATCCCATAAAA+GGG + chr2_4:937309-937328 None:intergenic 25.0%
! AATTACTGTTATCCCATAAA+AGG + chr2_4:937310-937329 None:intergenic 25.0%
! GTAATTCACTAATGCATAAA+TGG - chr2_4:937324-937343 Msa0307780:intron 25.0%
!! AAAGCAGAATCTTATTTGAA+AGG + chr2_4:937633-937652 None:intergenic 25.0%
!! CACACTGAATTAATTTCTTT+TGG - chr2_4:937720-937739 Msa0307780:intron 25.0%
! CTACTTATAAACATATGTTC+AGG + chr2_4:937867-937886 None:intergenic 25.0%
! CTGAACATATGTTTATAAGT+AGG - chr2_4:937865-937884 Msa0307780:intron 25.0%
! GAACATATGTTTATAAGTAG+GGG - chr2_4:937867-937886 Msa0307780:intron 25.0%
! TGAAGATATGTTTATTAGTG+GGG + chr2_4:937963-937982 None:intergenic 25.0%
! CTGAAGATATGTTTATTAGT+GGG + chr2_4:937964-937983 None:intergenic 25.0%
!! TATATACTGTTTTACACATC+TGG - chr2_4:938061-938080 Msa0307780:CDS 25.0%
! GCTAGTATTATAAATGGAAT+TGG - chr2_4:938367-938386 Msa0307780:intron 25.0%
! CATTAACTAATTATGATGTG+TGG + chr2_4:938624-938643 None:intergenic 25.0%
! AAACTTTCCGTTACATTTAA+AGG + chr2_4:938929-938948 None:intergenic 25.0%
!! TGTATATTTTGCTACATCAA+TGG - chr2_4:938979-938998 Msa0307780:intron 25.0%
!! GTATATTTTGCTACATCAAT+GGG - chr2_4:938980-938999 Msa0307780:intron 25.0%
! AGTTGAATTACACATTATGT+TGG - chr2_4:939332-939351 Msa0307780:intron 25.0%
! ATATTATATATTGACAGGCT+AGG - chr2_4:939464-939483 Msa0307780:intron 25.0%
!! GAGGTTTTTATGAAATAAAC+AGG - chr2_4:939697-939716 Msa0307780:intron 25.0%
! TCATGTTAGATTAGAATGTT+TGG - chr2_4:939858-939877 Msa0307780:intron 25.0%
! AGAATATTTGAGTGGTTATT+TGG + chr2_4:940251-940270 None:intergenic 25.0%
! AATAACCACTCAAATATTCT+AGG - chr2_4:940251-940270 Msa0307780:intron 25.0%
! GTTTGTACAAGGAATAAATA+AGG + chr2_4:940300-940319 None:intergenic 25.0%
! TCACAAATTAGTTACCATTA+TGG + chr2_4:940527-940546 None:intergenic 25.0%
!!! TATTGGTAACAAATTTTGCT+TGG - chr2_4:940715-940734 Msa0307780:CDS 25.0%
!! TAGCACTGTATATGAATTTT+AGG + chr2_4:940877-940896 None:intergenic 25.0%
! TTGGTTAGTTGAATGGATAA+CGG + chr2_4:935684-935703 None:intergenic 30.0%
! TACTTGTTGAGCAGAATATA+TGG - chr2_4:935858-935877 Msa0307780:intron 30.0%
GAATATATGGATTCAGATGA+AGG - chr2_4:935871-935890 Msa0307780:intron 30.0%
! TATGTGATGTGTATGGATTT+TGG - chr2_4:936068-936087 Msa0307780:intron 30.0%
! TCTTTATTCCCCTTTTCTTA+TGG - chr2_4:936207-936226 Msa0307780:intron 30.0%
TGAACTTATAATTGTGTGAG+TGG - chr2_4:936259-936278 Msa0307780:intron 30.0%
!! TTTTACATTGGTTGTGAATG+AGG - chr2_4:936286-936305 Msa0307780:intron 30.0%
TATATCCATTATCCGCTATA+AGG + chr2_4:936450-936469 None:intergenic 30.0%
ACCGATAACAGATAAGTTAA+TGG - chr2_4:936470-936489 Msa0307780:intron 30.0%
TGTATTTGTAAACTGAGAGT+TGG - chr2_4:936585-936604 Msa0307780:intron 30.0%
CTCATATGTCTAATGTTCTA+AGG - chr2_4:936678-936697 Msa0307780:intron 30.0%
!! TAATGTTCTAAGGTGTTTAG+TGG - chr2_4:936688-936707 Msa0307780:intron 30.0%
GTTGTCCCTATTATTCTTTA+CGG - chr2_4:936733-936752 Msa0307780:intron 30.0%
AGAGTCCGTAAAGAATAATA+GGG + chr2_4:936741-936760 None:intergenic 30.0%
TCTTGCATCAAAAGTCTTTA+TGG - chr2_4:936812-936831 Msa0307780:intron 30.0%
ATCAAAAGTCTTTATGGTAG+TGG - chr2_4:936818-936837 Msa0307780:intron 30.0%
CATATTTACTCATGAAAAGC+AGG + chr2_4:937136-937155 None:intergenic 30.0%
!! ATATCTGTCTTGCTTTTCAT+TGG - chr2_4:937189-937208 Msa0307780:intron 30.0%
!!! CTTTTCATTGGATTAGTATG+TGG - chr2_4:937201-937220 Msa0307780:intron 30.0%
CTACTGTTCACAATGTTATT+TGG - chr2_4:937234-937253 Msa0307780:CDS 30.0%
TTGAACAATTCATCAGTCAT+GGG + chr2_4:937362-937381 None:intergenic 30.0%
ATTGAACAATTCATCAGTCA+TGG + chr2_4:937363-937382 None:intergenic 30.0%
GGTACTAAATGTACATTTGT+CGG + chr2_4:937412-937431 None:intergenic 30.0%
GTAATCAGAAGAAAAATACC+TGG + chr2_4:937453-937472 None:intergenic 30.0%
! TCTTACAAGCCAATTTTGTA+AGG - chr2_4:937899-937918 Msa0307780:intron 30.0%
CAAACTCATCCTTACAAAAT+TGG + chr2_4:937911-937930 None:intergenic 30.0%
! CAATTTTGTAAGGATGAGTT+TGG - chr2_4:937909-937928 Msa0307780:intron 30.0%
GAAGATATGTTTATTAGTGG+GGG + chr2_4:937962-937981 None:intergenic 30.0%
CCTGAAGATATGTTTATTAG+TGG + chr2_4:937965-937984 None:intergenic 30.0%
CCACTAATAAACATATCTTC+AGG - chr2_4:937962-937981 Msa0307780:intron 30.0%
TACACATCTGGCTAAAATTT+CGG - chr2_4:938073-938092 Msa0307780:CDS 30.0%
!! CTTCACATAAGCTATTTTCA+AGG + chr2_4:938199-938218 None:intergenic 30.0%
GCTGTTGCTAGTATTATAAA+TGG - chr2_4:938361-938380 Msa0307780:intron 30.0%
ATCATTCTGTGCAGATATTT+AGG - chr2_4:938394-938413 Msa0307780:intron 30.0%
!! ATTTGTCTCATTGGTGTTAA+AGG - chr2_4:938852-938871 Msa0307780:intron 30.0%
!! GGAAAGTTTTGATGTTTAGA+TGG - chr2_4:938940-938959 Msa0307780:intron 30.0%
AGGAATAGTTGCAAAATACA+AGG + chr2_4:939046-939065 None:intergenic 30.0%
GTTATCAATTATCGTGAGTT+TGG + chr2_4:939098-939117 None:intergenic 30.0%
GATAACTCAACTCTTATGTT+AGG - chr2_4:939112-939131 Msa0307780:intron 30.0%
CATAAATGATTGAGCAGTTT+GGG + chr2_4:939186-939205 None:intergenic 30.0%
CAACCTCATATATACAGTAT+CGG - chr2_4:939286-939305 Msa0307780:intron 30.0%
AAACCGATACTGTATATATG+AGG + chr2_4:939292-939311 None:intergenic 30.0%
TGAATTACACATTATGTTGG+TGG - chr2_4:939335-939354 Msa0307780:intron 30.0%
!!! TCTTCTTTCTTTTTGGTTTG+AGG - chr2_4:939359-939378 Msa0307780:intron 30.0%
!!! CTTCTTTCTTTTTGGTTTGA+GGG - chr2_4:939360-939379 Msa0307780:intron 30.0%
!!! TTCTTTCTTTTTGGTTTGAG+GGG - chr2_4:939361-939380 Msa0307780:intron 30.0%
GAACATTGTAAGGAAAACAT+CGG + chr2_4:939404-939423 None:intergenic 30.0%
AATGTATGGAGAACATTGTA+AGG + chr2_4:939414-939433 None:intergenic 30.0%
!! CTAAGGTCTCTTTTAACTAT+TGG - chr2_4:939493-939512 Msa0307780:intron 30.0%
TTAACTATTGGAGCTATACT+TGG - chr2_4:939505-939524 Msa0307780:intron 30.0%
TAACTATTGGAGCTATACTT+GGG - chr2_4:939506-939525 Msa0307780:intron 30.0%
AAAAACCTCTGTATTTCCAT+TGG + chr2_4:939686-939705 None:intergenic 30.0%
GAAATTAAGGCTTATGTTAG+TGG - chr2_4:939723-939742 Msa0307780:intron 30.0%
TAAAGATATAGGTCAGATAC+TGG + chr2_4:939939-939958 None:intergenic 30.0%
CGTTTGTATGCTAAAGATAT+AGG + chr2_4:939950-939969 None:intergenic 30.0%
TGCATTAAACTGATAGAAAC+TGG - chr2_4:940041-940060 Msa0307780:intron 30.0%
! ATTGAACAATTTCTGGAGAA+AGG - chr2_4:940102-940121 Msa0307780:intron 30.0%
TGTATGTTCCATCTATGATT+GGG + chr2_4:940130-940149 None:intergenic 30.0%
TTGTATGTTCCATCTATGAT+TGG + chr2_4:940131-940150 None:intergenic 30.0%
TTTGAGTGGTTATTTGGAAA+GGG + chr2_4:940245-940264 None:intergenic 30.0%
ATTTGAGTGGTTATTTGGAA+AGG + chr2_4:940246-940265 None:intergenic 30.0%
! GTGTATTTTCTGTTTGTACA+AGG + chr2_4:940311-940330 None:intergenic 30.0%
CCATTATGGTCAAAATAGTA+CGG + chr2_4:940513-940532 None:intergenic 30.0%
!! AATTGTGTATTTGCTTTTGC+AGG - chr2_4:940626-940645 Msa0307780:CDS 30.0%
TTTATAAGTTTGTCAACGAG+TGG - chr2_4:940666-940685 Msa0307780:CDS 30.0%
GATTGAAATGCAGTGAGAAT+TGG + chr2_4:935571-935590 None:intergenic 35.0%
!! TAATGCGTTGGTTAGTTGAA+TGG + chr2_4:935691-935710 None:intergenic 35.0%
!! AAACTTCGCTGATTTGTTCT+TGG + chr2_4:935799-935818 None:intergenic 35.0%
AGCACAAGAAGAAGAAATGA+AGG - chr2_4:935832-935851 Msa0307780:intron 35.0%
GTATCAATGAGACTCATCAA+CGG + chr2_4:935944-935963 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG - chr2_4:935986-936005 Msa0307780:intron 35.0%
!!! ATTTTGGTTTCTACATGAGC+AGG - chr2_4:936084-936103 Msa0307780:intron 35.0%
TAATCGCAAAAAACAGTAGC+AGG + chr2_4:936111-936130 None:intergenic 35.0%
!!! GTGAGTGGTTAGTTTTACAT+TGG - chr2_4:936274-936293 Msa0307780:intron 35.0%
TACTCATTATCAGCCAATGT+GGG + chr2_4:936633-936652 None:intergenic 35.0%
TTACTCATTATCAGCCAATG+TGG + chr2_4:936634-936653 None:intergenic 35.0%
GAGAGTCCGTAAAGAATAAT+AGG + chr2_4:936742-936761 None:intergenic 35.0%
ATTCTCCCATCAAGTTAACA+CGG + chr2_4:936783-936802 None:intergenic 35.0%
! ACGGAAAACCATCAAACTTT+TGG - chr2_4:937041-937060 Msa0307780:intron 35.0%
!!! ATGCCTTTTTCAGCTTTTAC+TGG - chr2_4:937385-937404 Msa0307780:intron 35.0%
AGTGTGACTAAATCAAGTAG+AGG + chr2_4:937706-937725 None:intergenic 35.0%
!!! TTCTTTTGGTGTTAGATTCG+AGG - chr2_4:937734-937753 Msa0307780:intron 35.0%
ACCAATCCAACAAGTAAAGA+AGG + chr2_4:937770-937789 None:intergenic 35.0%
CATATGTTTATAAGTAGGGG+AGG - chr2_4:937870-937889 Msa0307780:intron 35.0%
!! CAAAATTGGCTTGTAAGACA+AGG + chr2_4:937897-937916 None:intergenic 35.0%
GGTCATATCTCATCCAATAT+AGG - chr2_4:937983-938002 Msa0307780:intron 35.0%
ACACAGTTGAAGTCCTATAT+TGG + chr2_4:937999-938018 None:intergenic 35.0%
GCAGATGAGATATCATAACA+CGG + chr2_4:938099-938118 None:intergenic 35.0%
TCTTGGTATGAAAGACTCTT+GGG - chr2_4:938321-938340 Msa0307780:intron 35.0%
TGTGCAGATATTTAGGCTAT+GGG - chr2_4:938401-938420 Msa0307780:intron 35.0%
AACAACCTGAAAACAAGAAG+GGG + chr2_4:938722-938741 None:intergenic 35.0%
CAACAACCTGAAAACAAGAA+GGG + chr2_4:938723-938742 None:intergenic 35.0%
! ATTTTCCTTCTCCATTCCTT+CGG - chr2_4:938789-938808 Msa0307780:intron 35.0%
AACACCAATGAGACAAATAC+AGG + chr2_4:938850-938869 None:intergenic 35.0%
TCAACTCTTATGTTAGGTCA+TGG - chr2_4:939118-939137 Msa0307780:intron 35.0%
GCATAAATGATTGAGCAGTT+TGG + chr2_4:939187-939206 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+CGG - chr2_4:939200-939219 Msa0307780:CDS 35.0%
! AGTTGATGTACGGAGTAAAT+CGG - chr2_4:939210-939229 Msa0307780:CDS 35.0%
AGTAAATCGGAGTTTGGTAA+AGG - chr2_4:939223-939242 Msa0307780:CDS 35.0%
TACTGTATATATGAGGTTGG+AGG + chr2_4:939285-939304 None:intergenic 35.0%
CGATACTGTATATATGAGGT+TGG + chr2_4:939288-939307 None:intergenic 35.0%
!! TGGTGGATCTTCTTTCTTTT+TGG - chr2_4:939352-939371 Msa0307780:intron 35.0%
TGATCAGGTGTAAATGTGTA+GGG + chr2_4:939576-939595 None:intergenic 35.0%
AAAATCAAAAACTGACCTCC+TGG + chr2_4:939608-939627 None:intergenic 35.0%
GATAACCAATGGAAATACAG+AGG - chr2_4:939678-939697 Msa0307780:intron 35.0%
ATTAAGGCTTATGTTAGTGG+TGG - chr2_4:939726-939745 Msa0307780:intron 35.0%
GAAACGTTAAACAGAACAGA+TGG - chr2_4:940174-940193 Msa0307780:intron 35.0%
AGAACAGATGGACAAAAACA+TGG - chr2_4:940186-940205 Msa0307780:intron 35.0%
GTCAAAATAGTACGGTTTAC+TGG + chr2_4:940505-940524 None:intergenic 35.0%
!!! CCGTACTATTTTGACCATAA+TGG - chr2_4:940510-940529 Msa0307780:CDS 35.0%
TTCAAGTGCTCTTGTACTAT+TGG - chr2_4:940698-940717 Msa0307780:CDS 35.0%
TTTCCCTTGTTGGATTTCAA+TGG - chr2_4:940839-940858 Msa0307780:CDS 35.0%
TTCCCTTGTTGGATTTCAAT+GGG - chr2_4:940840-940859 Msa0307780:CDS 35.0%
TACCCATTGAAATCCAACAA+GGG + chr2_4:940845-940864 None:intergenic 35.0%
TTACCCATTGAAATCCAACA+AGG + chr2_4:940846-940865 None:intergenic 35.0%
TTGAATGGGAAATGAGGTTG+CGG + chr2_4:935616-935635 None:intergenic 40.0%
AGGTAAGTGGTGGTTTGAAT+GGG + chr2_4:935630-935649 None:intergenic 40.0%
! GTTAGTTGAATGGATAACGG+TGG + chr2_4:935681-935700 None:intergenic 40.0%
TCGAGGATGTAATAATGCGT+TGG + chr2_4:935703-935722 None:intergenic 40.0%
!!! TCTTGATTTTGAAGTACGCG+AGG + chr2_4:935755-935774 None:intergenic 40.0%
!! GCTGATTTGTTCTTGGTGTT+CGG + chr2_4:935792-935811 None:intergenic 40.0%
TTGTTTACTGGACCTGCTAT+TGG - chr2_4:935902-935921 Msa0307780:intron 40.0%
CATAACCAAAGACCAATAGC+AGG + chr2_4:935917-935936 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG - chr2_4:935917-935936 Msa0307780:intron 40.0%
CTCATTGATACTGCTGTTGT+TGG - chr2_4:935953-935972 Msa0307780:intron 40.0%
TTGGTGTAGATGTGCAAGTT+TGG - chr2_4:936359-936378 Msa0307780:intron 40.0%
TGGTGTAGATGTGCAAGTTT+GGG - chr2_4:936360-936379 Msa0307780:intron 40.0%
GCTGATAAGCTACCTTATAG+CGG - chr2_4:936435-936454 Msa0307780:intron 40.0%
!! AGCTACCTTATAGCGGATAA+TGG - chr2_4:936442-936461 Msa0307780:intron 40.0%
TTGAGTGTTTAGTCCCACAT+TGG - chr2_4:936617-936636 Msa0307780:CDS 40.0%
CTCTCCAACAAGTGGTATTT+CGG - chr2_4:936757-936776 Msa0307780:intron 40.0%
AACTTGATGGGAGAATGAGA+TGG - chr2_4:936787-936806 Msa0307780:intron 40.0%
ACTTGATGGGAGAATGAGAT+GGG - chr2_4:936788-936807 Msa0307780:intron 40.0%
!! GTCTTTATGGTAGTGGAGTA+AGG - chr2_4:936825-936844 Msa0307780:intron 40.0%
!! TTTATGGTAGTGGAGTAAGG+TGG - chr2_4:936828-936847 Msa0307780:intron 40.0%
ACACCCAACAATGACAAAAG+CGG - chr2_4:936954-936973 Msa0307780:CDS 40.0%
TATGTTTGTGTAGGATAGGG+AGG - chr2_4:937152-937171 Msa0307780:intron 40.0%
!! CATTGGATTAGTATGTGGCT+TGG - chr2_4:937206-937225 Msa0307780:intron 40.0%
ACAATTCATCAGTCATGGGT+AGG + chr2_4:937358-937377 None:intergenic 40.0%
GGTCCAGTAAAAGCTGAAAA+AGG + chr2_4:937391-937410 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+AGG + chr2_4:937433-937452 None:intergenic 40.0%
TGCAGCTAATACTTATGTCC+AGG - chr2_4:937432-937451 Msa0307780:CDS 40.0%
!! TTGGTGTTAGATTCGAGGAT+TGG - chr2_4:937739-937758 Msa0307780:intron 40.0%
! GCCTTCTTTACTTGTTGGAT+TGG - chr2_4:937766-937785 Msa0307780:intron 40.0%
CAAGACTGCGTGATAAAATG+TGG + chr2_4:938306-938325 None:intergenic 40.0%
! CACATTTTATCACGCAGTCT+TGG - chr2_4:938304-938323 Msa0307780:intron 40.0%
GTCTTGGTATGAAAGACTCT+TGG - chr2_4:938320-938339 Msa0307780:intron 40.0%
CTTGGTATGAAAGACTCTTG+GGG - chr2_4:938322-938341 Msa0307780:intron 40.0%
CTGTGCAGATATTTAGGCTA+TGG - chr2_4:938400-938419 Msa0307780:intron 40.0%
TATTTAGGCTATGGGATTGC+TGG - chr2_4:938409-938428 Msa0307780:intron 40.0%
ATTTAGGCTATGGGATTGCT+GGG - chr2_4:938410-938429 Msa0307780:intron 40.0%
ACAACCTGAAAACAAGAAGG+GGG + chr2_4:938721-938740 None:intergenic 40.0%
GCAACAACCTGAAAACAAGA+AGG + chr2_4:938724-938743 None:intergenic 40.0%
AGCCAAACTCTAATCGAGAA+GGG - chr2_4:938757-938776 Msa0307780:intron 40.0%
ATCCCTTCTCGATTAGAGTT+TGG + chr2_4:938762-938781 None:intergenic 40.0%
TCTAATCGAGAAGGGATACA+GGG - chr2_4:938765-938784 Msa0307780:intron 40.0%
! TTTTCCTTCTCCATTCCTTC+GGG - chr2_4:938790-938809 Msa0307780:intron 40.0%
TGCTCCTGTATTTGTCTCAT+TGG - chr2_4:938843-938862 Msa0307780:intron 40.0%
ATCAATGGGTACACATGCAA+CGG - chr2_4:938994-939013 Msa0307780:intron 40.0%
AATGTGCAGATAGACAGCAA+AGG + chr2_4:939066-939085 None:intergenic 40.0%
TTTACGTTGTGCACAGTATG+TGG - chr2_4:939149-939168 Msa0307780:intron 40.0%
TTTACTCCGTACATCAACTC+AGG + chr2_4:939209-939228 None:intergenic 40.0%
AATCGGAGTTTGGTAAAGGT+TGG - chr2_4:939227-939246 Msa0307780:CDS 40.0%
!!! CTATACTTGGGCTGCTTTTT+GGG - chr2_4:939518-939537 Msa0307780:intron 40.0%
AATGTGTAGGGGAATAACCA+AGG + chr2_4:939564-939583 None:intergenic 40.0%
GATCAGGTGTAAATGTGTAG+GGG + chr2_4:939575-939594 None:intergenic 40.0%
CTGATCAGGTGTAAATGTGT+AGG + chr2_4:939577-939596 None:intergenic 40.0%
CACATTTACACCTGATCAGA+TGG - chr2_4:939578-939597 Msa0307780:intron 40.0%
ACCACTAGCGCTAAAAAGTA+CGG + chr2_4:939795-939814 None:intergenic 40.0%
AAGACCAAGGCTCATGTTTA+AGG - chr2_4:939977-939996 Msa0307780:intron 40.0%
AAGTCCTTAAACATGAGCCT+TGG + chr2_4:939984-940003 None:intergenic 40.0%
GAAAGGTTCCCAATCATAGA+TGG - chr2_4:940119-940138 Msa0307780:intron 40.0%
CAAAAACATGGTTCCTACCA+AGG - chr2_4:940198-940217 Msa0307780:intron 40.0%
GGGATCCTAGAATATTTGAG+TGG + chr2_4:940259-940278 None:intergenic 40.0%
AACTGACACTCGCAATTTCT+GGG + chr2_4:940421-940440 None:intergenic 40.0%
AAACTGACACTCGCAATTTC+TGG + chr2_4:940422-940441 None:intergenic 40.0%
! ACAAATTTTGCTTGGTCTGC+TGG - chr2_4:940723-940742 Msa0307780:CDS 40.0%
CAGATCTTACGAAGCAGATA+TGG - chr2_4:940799-940818 Msa0307780:CDS 40.0%
GGATTTCAATGGGTAAGACT+CGG - chr2_4:940850-940869 Msa0307780:CDS 40.0%
AAATGAGGTTGCGGTTAACG+AGG + chr2_4:935607-935626 None:intergenic 45.0%
GGTGGTTTGAATGGGAAATG+AGG + chr2_4:935622-935641 None:intergenic 45.0%
GAGGTAAGTGGTGGTTTGAA+TGG + chr2_4:935631-935650 None:intergenic 45.0%
GAAGGGAATGAAGAGGTAAG+TGG + chr2_4:935643-935662 None:intergenic 45.0%
! AGTTGAATGGATAACGGTGG+TGG + chr2_4:935678-935697 None:intergenic 45.0%
GCATTATTACATCCTCGAGC+CGG - chr2_4:935705-935724 Msa0307780:intron 45.0%
! TTTGAAGTACGCGAGGTGTT+AGG + chr2_4:935748-935767 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG - chr2_4:935959-935978 Msa0307780:intron 45.0%
GTCGATTGCTACGTCGAATA+TGG - chr2_4:936155-936174 Msa0307780:intron 45.0%
! TGCTACTGCACTTGCTAAAC+AGG - chr2_4:936179-936198 Msa0307780:intron 45.0%
TTTACGGACTCTCCAACAAG+TGG - chr2_4:936749-936768 Msa0307780:intron 45.0%
! TTTCGGCCGTGTTAACTTGA+TGG - chr2_4:936774-936793 Msa0307780:intron 45.0%
! TTCGGCCGTGTTAACTTGAT+GGG - chr2_4:936775-936794 Msa0307780:intron 45.0%
TGATGTGCGAGACTCATAAC+TGG - chr2_4:936888-936907 Msa0307780:CDS 45.0%
!! CCTCCGCTTTTGTCATTGTT+GGG + chr2_4:936960-936979 None:intergenic 45.0%
!! TCCTCCGCTTTTGTCATTGT+TGG + chr2_4:936961-936980 None:intergenic 45.0%
CCCATAAAAGGGACACAACT+GGG + chr2_4:937298-937317 None:intergenic 45.0%
! CCCAGTTGTGTCCCTTTTAT+GGG - chr2_4:937295-937314 Msa0307780:CDS 45.0%
TCCCATAAAAGGGACACAAC+TGG + chr2_4:937299-937318 None:intergenic 45.0%
! GTTAGATTCGAGGATTGGCA+TGG - chr2_4:937744-937763 Msa0307780:intron 45.0%
GCATGGCCTTCTTTACTTGT+TGG - chr2_4:937761-937780 Msa0307780:intron 45.0%
AGTTCCACCTTGGATGAGTA+TGG - chr2_4:937841-937860 Msa0307780:intron 45.0%
TTTAGGCTATGGGATTGCTG+GGG - chr2_4:938411-938430 Msa0307780:intron 45.0%
!!! TACACCCCCTTCTTGTTTTC+AGG - chr2_4:938714-938733 Msa0307780:intron 45.0%
GAGCCAAACTCTAATCGAGA+AGG - chr2_4:938756-938775 Msa0307780:intron 45.0%
CTCTAATCGAGAAGGGATAC+AGG - chr2_4:938764-938783 Msa0307780:intron 45.0%
TTTCCTTCTCCATTCCTTCG+GGG - chr2_4:938791-938810 Msa0307780:intron 45.0%
AAATTCCTTCCCCGAAGGAA+TGG + chr2_4:938803-938822 None:intergenic 45.0%
GATTGAGCAGTTTGGGAGAT+AGG + chr2_4:939179-939198 None:intergenic 45.0%
GTACGGAGTAAATCGGAGTT+TGG - chr2_4:939217-939236 Msa0307780:CDS 45.0%
!!! GCTATACTTGGGCTGCTTTT+TGG - chr2_4:939517-939536 Msa0307780:intron 45.0%
AATGTAGACAAGGGCGATAG+TGG + chr2_4:939648-939667 None:intergenic 45.0%
TATCGCCCTTGTCTACATTG+CGG - chr2_4:939649-939668 Msa0307780:intron 45.0%
GTGTGATCATGCAGATGCAT+AGG - chr2_4:939760-939779 Msa0307780:intron 45.0%
!! TCCGTACTTTTTAGCGCTAG+TGG - chr2_4:939791-939810 Msa0307780:intron 45.0%
CAAACGAGTGTCAAAGACCA+AGG - chr2_4:939964-939983 Msa0307780:intron 45.0%
AAGTCTCTCGAATCCTTGGT+AGG + chr2_4:940214-940233 None:intergenic 45.0%
TACCAAGGATTCGAGAGACT+TGG - chr2_4:940213-940232 Msa0307780:intron 45.0%
GTGGTTATTTGGAAAGGGAG+TGG + chr2_4:940240-940259 None:intergenic 45.0%
GGATAGACAAGACGTAGTCA+GGG + chr2_4:940279-940298 None:intergenic 45.0%
AGGATAGACAAGACGTAGTC+AGG + chr2_4:940280-940299 None:intergenic 45.0%
!! GTGTATTTGCTTTTGCAGGC+TGG - chr2_4:940630-940649 Msa0307780:CDS 45.0%
!! ATTTGCTTTTGCAGGCTGGA+CGG - chr2_4:940634-940653 Msa0307780:CDS 45.0%
GGGAATGAAGAGGTAAGTGG+TGG + chr2_4:935640-935659 None:intergenic 50.0%
GTGGTGAGAAGGGAATGAAG+AGG + chr2_4:935650-935669 None:intergenic 50.0%
! TGAATGGATAACGGTGGTGG+TGG + chr2_4:935675-935694 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG - chr2_4:935909-935928 Msa0307780:intron 50.0%
ACGGCCGAAATACCACTTGT+TGG + chr2_4:936764-936783 None:intergenic 50.0%
AGTAAGGTGGCGTGCTTTGT+TGG - chr2_4:936841-936860 Msa0307780:intron 50.0%
CCCAACAATGACAAAAGCGG+AGG - chr2_4:936957-936976 Msa0307780:CDS 50.0%
! GCCCAGTTGTGTCCCTTTTA+TGG - chr2_4:937294-937313 Msa0307780:CDS 50.0%
! GATTGGTTGCTCAGAGTGCA+AGG - chr2_4:937783-937802 Msa0307780:intron 50.0%
GTGTGTTGAGAGTTCCACCT+TGG - chr2_4:937831-937850 Msa0307780:intron 50.0%
GTTCAGGCCATACTCATCCA+AGG + chr2_4:937851-937870 None:intergenic 50.0%
AAGGATGAGTTTGGCCCAAC+TGG - chr2_4:937918-937937 Msa0307780:intron 50.0%
!! TTTGGCCCAACTGGCTTGTA+AGG - chr2_4:937927-937946 Msa0307780:intron 50.0%
CCTCACCTTACAAGCCAGTT+GGG + chr2_4:937935-937954 None:intergenic 50.0%
TCCTCACCTTACAAGCCAGT+TGG + chr2_4:937936-937955 None:intergenic 50.0%
AGCAACAGCCAAAGCCTTCA+GGG + chr2_4:938350-938369 None:intergenic 50.0%
TAGCAACAGCCAAAGCCTTC+AGG + chr2_4:938351-938370 None:intergenic 50.0%
GACAGAAATTCCTTCCCCGA+AGG + chr2_4:938808-938827 None:intergenic 50.0%
!!! GGGCTGCTTTTTGGGATAGT+TGG - chr2_4:939526-939545 Msa0307780:intron 50.0%
ACCTGATCAGATGGTCATCC+AGG - chr2_4:939587-939606 Msa0307780:intron 50.0%
TCCTGGATGACCATCTGATC+AGG + chr2_4:939591-939610 None:intergenic 50.0%
TGATCAGATGGTCATCCAGG+AGG - chr2_4:939590-939609 Msa0307780:intron 50.0%
ATCGCCCTTGTCTACATTGC+GGG - chr2_4:939650-939669 Msa0307780:intron 50.0%
GTGGTGACACCTGCAACTAT+CGG - chr2_4:939810-939829 Msa0307780:intron 50.0%
ATACCAGCAATGTTCCCTCC+AGG + chr2_4:939836-939855 None:intergenic 50.0%
GTCCAAGTCTCTCGAATCCT+TGG + chr2_4:940218-940237 None:intergenic 50.0%
!! TTTGCTTTTGCAGGCTGGAC+GGG - chr2_4:940635-940654 Msa0307780:CDS 50.0%
CGAAGCAGATATGGTCTGCA+AGG - chr2_4:940808-940827 Msa0307780:CDS 50.0%
GATATGGTCTGCAAGGCTGT+TGG - chr2_4:940815-940834 Msa0307780:CDS 50.0%
!!! GGCTGTTGGTTTTCCCTTGT+TGG - chr2_4:940829-940848 Msa0307780:CDS 50.0%
!! ATGGATAACGGTGGTGGTGG+TGG + chr2_4:935672-935691 None:intergenic 55.0%
! TACGCGAGGTGTTAGGAACC+CGG + chr2_4:935741-935760 None:intergenic 55.0%
! AGGTGGCGTGCTTTGTTGGA+TGG - chr2_4:936845-936864 Msa0307780:intron 55.0%
CAGGCCATACTCATCCAAGG+TGG + chr2_4:937848-937867 None:intergenic 55.0%
!! CCCAACTGGCTTGTAAGGTG+AGG - chr2_4:937932-937951 Msa0307780:intron 55.0%
GCAACAGCCAAAGCCTTCAG+GGG + chr2_4:938349-938368 None:intergenic 55.0%
CTTCCCCGAAGGAATGGAGA+AGG + chr2_4:938797-938816 None:intergenic 55.0%
CTTCTCCATTCCTTCGGGGA+AGG - chr2_4:938795-938814 Msa0307780:intron 55.0%
GACAGGCTAGGTCGCTTCTA+AGG - chr2_4:939476-939495 Msa0307780:intron 55.0%
TCGCCCTTGTCTACATTGCG+GGG - chr2_4:939651-939670 Msa0307780:intron 55.0%
TGCCCCCGCAATGTAGACAA+GGG + chr2_4:939657-939676 None:intergenic 55.0%
!! GGTGGTGGTGGTGGTGAGAA+GGG + chr2_4:935660-935679 None:intergenic 60.0%
!! TGGTGGTGGTGGTGGTGAGA+AGG + chr2_4:935661-935680 None:intergenic 60.0%
!! GATAACGGTGGTGGTGGTGG+TGG + chr2_4:935669-935688 None:intergenic 60.0%
GTGTTAGGAACCCGGAGCGA+CGG + chr2_4:935733-935752 None:intergenic 60.0%
! TTTGGTGCGACAACGCTCGC+AGG - chr2_4:937252-937271 Msa0307780:CDS 60.0%
AGACTCTTGGGGACCCCTGA+AGG - chr2_4:938333-938352 Msa0307780:intron 60.0%
TTGGGGACCCCTGAAGGCTT+TGG - chr2_4:938339-938358 Msa0307780:intron 60.0%
ATGGGATTGCTGGGGCTGCT+TGG - chr2_4:938419-938438 Msa0307780:intron 60.0%
TGGGATTGCTGGGGCTGCTT+GGG - chr2_4:938420-938439 Msa0307780:intron 60.0%
TGGGGCTGCTTGGGCTACAT+TGG - chr2_4:938429-938448 Msa0307780:intron 60.0%
CGCCCTTGTCTACATTGCGG+GGG - chr2_4:939652-939671 Msa0307780:intron 60.0%
CTGCCCCCGCAATGTAGACA+AGG + chr2_4:939658-939677 None:intergenic 60.0%
CTTGTCTACATTGCGGGGGC+AGG - chr2_4:939656-939675 Msa0307780:intron 60.0%
TGCGGGGGCAGGATAACCAA+TGG - chr2_4:939667-939686 Msa0307780:intron 60.0%
GACACCTGCAACTATCGGCC+TGG - chr2_4:939815-939834 Msa0307780:intron 60.0%
ACCTGCAACTATCGGCCTGG+AGG - chr2_4:939818-939837 Msa0307780:intron 60.0%
CCTGCAACTATCGGCCTGGA+GGG - chr2_4:939819-939838 Msa0307780:intron 60.0%
CCCTCCAGGCCGATAGTTGC+AGG + chr2_4:939822-939841 None:intergenic 65.0%
CGGCCTGGAGGGAACATTGC+TGG - chr2_4:939830-939849 Msa0307780:intron 65.0%
TCGAGCCGGAACCGTCGCTC+CGG - chr2_4:935719-935738 Msa0307780:intron 70.0%
GGAACCCGGAGCGACGGTTC+CGG + chr2_4:935727-935746 None:intergenic 70.0%
! GGAGCGACGGTTCCGGCTCG+AGG + chr2_4:935720-935739 None:intergenic 75.0%
CGAGCCGGAACCGTCGCTCC+GGG - chr2_4:935720-935739 Msa0307780:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 935560 940897 935560 ID=Msa0307780;Name=Msa0307780
chr2_4 mRNA 935560 940897 935560 ID=Msa0307780-mRNA-1;Parent=Msa0307780;Name=Msa0307780-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.69|0.71|0.92|0.69|0.64|14|0|522
chr2_4 exon 940450 940897 940450 ID=Msa0307780-mRNA-1:exon:367;Parent=Msa0307780-mRNA-1
chr2_4 exon 940257 940351 940257 ID=Msa0307780-mRNA-1:exon:366;Parent=Msa0307780-mRNA-1
chr2_4 exon 939184 939292 939184 ID=Msa0307780-mRNA-1:exon:365;Parent=Msa0307780-mRNA-1
chr2_4 exon 939004 939059 939004 ID=Msa0307780-mRNA-1:exon:364;Parent=Msa0307780-mRNA-1
chr2_4 exon 938245 938249 938245 ID=Msa0307780-mRNA-1:exon:363;Parent=Msa0307780-mRNA-1
chr2_4 exon 937998 938136 937998 ID=Msa0307780-mRNA-1:exon:362;Parent=Msa0307780-mRNA-1
chr2_4 exon 937584 937721 937584 ID=Msa0307780-mRNA-1:exon:361;Parent=Msa0307780-mRNA-1
chr2_4 exon 937430 937498 937430 ID=Msa0307780-mRNA-1:exon:360;Parent=Msa0307780-mRNA-1
chr2_4 exon 937213 937323 937213 ID=Msa0307780-mRNA-1:exon:359;Parent=Msa0307780-mRNA-1
chr2_4 exon 936846 936976 936846 ID=Msa0307780-mRNA-1:exon:358;Parent=Msa0307780-mRNA-1
chr2_4 exon 936758 936779 936758 ID=Msa0307780-mRNA-1:exon:357;Parent=Msa0307780-mRNA-1
chr2_4 exon 936606 936683 936606 ID=Msa0307780-mRNA-1:exon:356;Parent=Msa0307780-mRNA-1
chr2_4 exon 935738 935809 935738 ID=Msa0307780-mRNA-1:exon:355;Parent=Msa0307780-mRNA-1
chr2_4 exon 935560 935655 935560 ID=Msa0307780-mRNA-1:exon:354;Parent=Msa0307780-mRNA-1
chr2_4 CDS 940450 940897 940450 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 940257 940351 940257 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 939184 939292 939184 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 939004 939059 939004 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 938245 938249 938245 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 937998 938136 937998 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 937584 937721 937584 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 937430 937498 937430 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 937213 937323 937213 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 936846 936976 936846 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 936758 936779 936758 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 936606 936683 936606 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 935738 935809 935738 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
chr2_4 CDS 935560 935655 935560 ID=Msa0307780-mRNA-1:cds;Parent=Msa0307780-mRNA-1
Gene Sequence

>Msa0307780

ATGGCGCACCAATTCTCACTGCATTTCAATCATCAAACTCTTCACCTCGTTAACCGCAACCTCATTTCCCATTCAAACCACCACTTACCTCTTCATTCCCTTCTCACCACCACCACCACCACCGTTATCCATTCAACTAACCAACGCATTATTACATCCTCGAGCCGGAACCGTCGCTCCGGGTTCCTAACACCTCGCGTACTTCAAAATCAAGAAGTCACAAACGAATCCGAACACCAAGAACAAATCAGCGAAGTTTCTTCTAAAGAACAAGCACAAGAAGAAGAAATGAAGGAAATACTTGTTGAGCAGAATATATGGATTCAGATGAAGGAAATTGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCGTTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGCGATTATTTGGGATACTTGTTTATGTTTTTGTCGATTGCTACGTCGAATATGGTTGCTACTGCACTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTCATTGGATTAGTATGTGGCTTGGTGATGCTACTGTTCACAATGTTATTTGGTGCGACAACGCTCGCAGCTTTTACTGGACCGACAAATGTACATTTAGTACCTGCAGCTAATACTTATGTCCAGCTTATTCTTGGTATGAAAGACTCTTGGGGACCCCTGAAGGCTTTGGCTGTTGCTAGTATTATAAATGGAATTGGTGATATCATTCTGTGCAGATATTTAGGCTATGGGATTGCTGGGGCTGCTTGGGCTACATTGGCATCACAAGTTGTTGCTTCATATATGATGAGCCAAACTCTAATCGAGAAGGGATACAGGGCATTTTCCTTCTCCATTCCTTCGGGGAAGGAATTTCTGTCAATATTTAGTCTTGCTGCTCCTGTATTTGTCTCATTGGTGTTAAAGATGGCTTTCTACGCTCTACTTGTATATTTTGCTACATCAATGGGTACACATGCAACGGCTGCTCATCAAGTCATGGTTCAGATCTTTACGTTGTGCACAGTATGTGGTGAACCTATCTCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTACGGAGTAAATCGGAGTTTGGTAAAGGCTAGGTCGCTTCTAAGGTCTCTTTTAACTATTGGAGCTATACTTGGGCTGCTTTTTGGGATAGTTGGAACATATTTGTTCCTTGGTTATTCCCCTACACATTTACACCTGATCAGATGGTCATCCAGGAGGATAACCAATGGAAATACAGAGATGCATAGGATCTTGATTCCGTACTTTTTAGCGCTAGTGGTGACACCTGCAACTATCGGCCTGGAGGGAACATTGCTGGCTGGACGGGATCTAAGATTTATAAGTTTGTCAACGAGTGGATGCTTTTGTTCAAGTGCTCTTGTACTATTGATCTTACGAAGCAGATATGGTCTGCAAGGCTGTTGGTTTTCCCTTGTTGGATTTCAATGGGTAAGACTCGGACCTAAAATTCATATACAGTGCTAG

Protein sequence

>Msa0307780

MAHQFSLHFNHQTLHLVNRNLISHSNHHLPLHSLLTTTTTTVIHSTNQRIITSSSRNRRSGFLTPRVLQNQEVTNESEHQEQISEVSSKEQAQEEEMKEILVEQNIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYLFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLVCGLVMLLFTMLFGATTLAAFTGPTNVHLVPAANTYVQLILGMKDSWGPLKALAVASIINGIGDIILCRYLGYGIAGAAWATLASQVVASYMMSQTLIEKGYRAFSFSIPSGKEFLSIFSLAAPVFVSLVLKMAFYALLVYFATSMGTHATAAHQVMVQIFTLCTVCGEPISQTAQSFMPELMYGVNRSLVKARSLLRSLLTIGAILGLLFGIVGTYLFLGYSPTHLHLIRWSSRRITNGNTEMHRILIPYFLALVVTPATIGLEGTLLAGRDLRFISLSTSGCFCSSALVLLILRSRYGLQGCWFSLVGFQWVRLGPKIHIQC*