AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307380 MtrunA17_Chr8g0345861 91.667 84 7 0 3 86 56 139 6.52e-52 160
Msa1307380 MtrunA17_Chr7g0276381 56.481 108 33 2 3 96 51 158 1.64e-31 109
Msa1307380 MtrunA17_Chr4g0004811 49.091 55 28 0 31 85 61 115 2.56e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307380 AT2G46820.2 62.000 100 32 1 3 96 54 153 2.28e-27 99.0
Msa1307380 AT2G46820.1 62.000 100 32 1 3 96 54 153 2.28e-27 99.0
Msa1307380 AT1G52220.4 39.506 81 46 2 9 89 52 129 1.35e-11 57.8
Msa1307380 AT4G01150.1 33.750 80 53 0 7 86 54 133 1.73e-11 57.8

Find 45 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCACCTATCAGCTTAAA+TGG 0.216366 8_4:-2959576 None:intergenic
CCTGGAGTTCTTGAGTTAAT+AGG 0.246781 8_4:+2959398 Msa1307380:CDS
CCCTGCAAATATCGCGTATT+TGG 0.254699 8_4:+2959479 Msa1307380:CDS
GGATGACCTTATAGAAGATA+TGG 0.334538 8_4:+2959806 Msa1307380:three_prime_UTR
ACCAAATACGCGATATTTGC+AGG 0.338699 8_4:-2959480 None:intergenic
TTACAAATTGATAAGATTAG+AGG 0.340323 8_4:+2959891 Msa1307380:three_prime_UTR
GATAGACTTCCTTTGATTCC+TGG 0.345188 8_4:+2959380 Msa1307380:CDS
GTTCTTGAGTTAATAGGAAT+TGG 0.346748 8_4:+2959404 Msa1307380:CDS
AAGAAAACCCTAGAAATTAC+TGG 0.372173 8_4:-2959975 None:intergenic
GTCATCCCATATCTTCTATA+AGG 0.393009 8_4:-2959812 None:intergenic
TCTAATCTTATCAATTTGTA+AGG 0.400180 8_4:-2959889 None:intergenic
TGGTGCATTGACATATAGAT+AGG 0.400882 8_4:+2959783 Msa1307380:three_prime_UTR
AATATCGGACTCTATCTATA+AGG 0.408677 8_4:-2959834 None:intergenic
GATATACATGGTTGATGGTC+AGG 0.413657 8_4:+2959721 Msa1307380:three_prime_UTR
AAAGATTGCTCGTGATGTTA+TGG 0.420998 8_4:+2958982 Msa1307380:CDS
TAGCTAGTGTATTTGCACTA+TGG 0.434144 8_4:+2959228 Msa1307380:CDS
CCGGGTCCATTTAAGCTGAT+AGG 0.438510 8_4:+2959570 Msa1307380:three_prime_UTR
TGCATCAAGTGAAATAATGT+TGG 0.448853 8_4:-2959696 None:intergenic
GATGTTATGGTAATGGCAAC+AGG 0.459632 8_4:+2958995 Msa1307380:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 8_4:+2959239 Msa1307380:CDS
GCATCAAGTGAAATAATGTT+GGG 0.472689 8_4:-2959695 None:intergenic
TCAGTTGATTCAACTTCTGT+TGG 0.480966 8_4:-2959025 None:intergenic
TGAAGATTCTTAACAAACTC+AGG 0.486308 8_4:-2959052 None:intergenic
GCATTGATATACATGGTTGA+TGG 0.499691 8_4:+2959743 Msa1307380:three_prime_UTR
TAAATATGCAGTGGGTTCAT+TGG 0.505381 8_4:+2959202 Msa1307380:CDS
CCTATTAACTCAAGAACTCC+AGG 0.507872 8_4:-2959398 None:intergenic
CCTATCAGCTTAAATGGACC+CGG 0.513699 8_4:-2959570 None:intergenic
GATGACCTTATAGAAGATAT+GGG 0.519246 8_4:+2959807 Msa1307380:three_prime_UTR
TTAATAGGAATTGGTTACAC+TGG 0.524822 8_4:+2959413 Msa1307380:CDS
GGTGCATTGACATATAGATA+GGG 0.536163 8_4:+2959784 Msa1307380:three_prime_UTR
TAATAGGAATTGGTTACACT+GGG 0.540472 8_4:+2959414 Msa1307380:CDS
TCAAGAACTCCAGGAATCAA+AGG 0.544788 8_4:-2959389 None:intergenic
CTTAGATTTAAATATATGAC+TGG 0.551593 8_4:+2959455 Msa1307380:CDS
ACTTGATGCATTGATATACA+TGG 0.554350 8_4:+2959709 Msa1307380:three_prime_UTR
TGCTCGTGATGTTATGGTAA+TGG 0.557462 8_4:+2958988 Msa1307380:CDS
TTTGATGATAAATATGCAGT+GGG 0.562064 8_4:+2959194 Msa1307380:CDS
ATTTGATGATAAATATGCAG+TGG 0.570116 8_4:+2959193 Msa1307380:CDS
GCATTGATATACATGGTTGA+TGG 0.575015 8_4:+2959716 Msa1307380:three_prime_UTR
TGGTCAAATACTATTGTGCT+TGG 0.604863 8_4:+2959763 Msa1307380:three_prime_UTR
TGGTCAGGCATTGATATACA+TGG 0.611000 8_4:+2959736 Msa1307380:three_prime_UTR
GTGCATTGACATATAGATAG+GGG 0.628973 8_4:+2959785 Msa1307380:three_prime_UTR
GGTCCATTTAAGCTGATAGG+TGG 0.648693 8_4:+2959573 Msa1307380:three_prime_UTR
CTATCAGCTTAAATGGACCC+GGG 0.651243 8_4:-2959569 None:intergenic
CCAAATACGCGATATTTGCA+GGG 0.651865 8_4:-2959479 None:intergenic
AATAGGAATTGGTTACACTG+GGG 0.760636 8_4:+2959415 Msa1307380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTATTTATTTTT+TGG + chr8_4:2957201-2957220 Msa1307380:intron 0.0%
!! AAAAAAAAATTAAAAAAATT+GGG - chr8_4:2957607-2957626 None:intergenic 0.0%
!! AAAAAAAAAATTAAAAAAAT+TGG - chr8_4:2957608-2957627 None:intergenic 0.0%
!! ATTGATATATATTTATGATT+GGG - chr8_4:2956472-2956491 None:intergenic 10.0%
!!! AAAATGTTTGATTTTTTTTA+AGG - chr8_4:2957839-2957858 None:intergenic 10.0%
!! TTATATTATTCATTAGAATA+TGG + chr8_4:2957964-2957983 Msa1307380:intron 10.0%
!! AAAATAAATAACATAATTCT+AGG - chr8_4:2959152-2959171 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG + chr8_4:2959154-2959173 Msa1307380:intron 10.0%
!! TATTTCAAAAAAAAAATACA+AGG - chr8_4:2959513-2959532 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG - chr8_4:2959852-2959871 None:intergenic 10.0%
!! ATAAAAACATATTTGTACAA+TGG + chr8_4:2956303-2956322 Msa1307380:intron 15.0%
!! TAAAAACATATTTGTACAAT+GGG + chr8_4:2956304-2956323 Msa1307380:intron 15.0%
!!! AATAATTAAAACGTTTTGAA+GGG - chr8_4:2956448-2956467 None:intergenic 15.0%
!! GATTGATATATATTTATGAT+TGG - chr8_4:2956473-2956492 None:intergenic 15.0%
!!! TAAAGGTTAAAACATTTTTT+TGG + chr8_4:2956568-2956587 Msa1307380:intron 15.0%
!!! TTTTTAATTTGACAAAAATC+AGG + chr8_4:2956806-2956825 Msa1307380:intron 15.0%
!!! TTTTAATTTGACAAAAATCA+GGG + chr8_4:2956807-2956826 Msa1307380:intron 15.0%
!!! TTTGAAATATATTTAGAGAA+AGG - chr8_4:2957462-2957481 None:intergenic 15.0%
!! AAATGACTAAAGAATAAAAT+TGG - chr8_4:2957486-2957505 None:intergenic 15.0%
!! ATATATAATGCAAGTAAAAA+AGG + chr8_4:2957628-2957647 Msa1307380:intron 15.0%
!!! AAAATTATAATGTTTGTTGT+TGG - chr8_4:2957814-2957833 None:intergenic 15.0%
!!! ATGACTATATTTTATGTTTA+TGG + chr8_4:2958004-2958023 Msa1307380:intron 15.0%
!! TTGTAATTTCATTAATATTC+AGG - chr8_4:2958160-2958179 None:intergenic 15.0%
!!! TTTTTTGATCAATTGATAAT+GGG - chr8_4:2958329-2958348 None:intergenic 15.0%
!!! TTTTTTTGATCAATTGATAA+TGG - chr8_4:2958330-2958349 None:intergenic 15.0%
!! TGTTCATTAATTAATAACAT+TGG + chr8_4:2958554-2958573 Msa1307380:intron 15.0%
!! TCAATAATAAACATTAAGAA+GGG - chr8_4:2959129-2959148 None:intergenic 15.0%
!! TGTTATATAAACACTTATAG+AGG - chr8_4:2956401-2956420 None:intergenic 20.0%
!!! CAATAATTAAAACGTTTTGA+AGG - chr8_4:2956449-2956468 None:intergenic 20.0%
!! AAACTAATTCAATAAAAGTC+AGG + chr8_4:2956849-2956868 Msa1307380:intron 20.0%
!! TTACTAAATCCATTAAGATT+AGG + chr8_4:2956976-2956995 Msa1307380:intron 20.0%
!! TCTCTAAGTTCAATTATATT+GGG - chr8_4:2957108-2957127 None:intergenic 20.0%
!! TTCTCTAAGTTCAATTATAT+TGG - chr8_4:2957109-2957128 None:intergenic 20.0%
!!! TTATTTTTTGGACAAAATCT+AGG + chr8_4:2957213-2957232 Msa1307380:intron 20.0%
!!! TATTTTTTGGACAAAATCTA+GGG + chr8_4:2957214-2957233 Msa1307380:intron 20.0%
!! ATATTTAGAGAAAGGATTAT+AGG - chr8_4:2957454-2957473 None:intergenic 20.0%
!!! GGAACTAAAAAATATTTTGT+AGG + chr8_4:2957670-2957689 Msa1307380:intron 20.0%
!!! TTTTTTATTTCTTTTGCATC+TGG - chr8_4:2958373-2958392 None:intergenic 20.0%
!! CAAAAGAAATAAAAAAAGAG+TGG + chr8_4:2958377-2958396 Msa1307380:intron 20.0%
!!! AACTTAAGCTATATTTTAAC+TGG + chr8_4:2958504-2958523 Msa1307380:intron 20.0%
!!! ACTTAAGCTATATTTTAACT+GGG + chr8_4:2958505-2958524 Msa1307380:intron 20.0%
!! GTCAATAATAAACATTAAGA+AGG - chr8_4:2959130-2959149 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG + chr8_4:2959455-2959474 Msa1307380:CDS 20.0%
!!! TGTTTTTTTAAAATGATTCC+CGG + chr8_4:2959551-2959570 Msa1307380:three_prime_UTR 20.0%
!! TCTAATCTTATCAATTTGTA+AGG - chr8_4:2959892-2959911 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG + chr8_4:2959891-2959910 Msa1307380:three_prime_UTR 20.0%
!! CATTTGTTGCATCTTATAAA+AGG - chr8_4:2956604-2956623 None:intergenic 25.0%
!! TTTTATCACATGTTGTCATA+TGG + chr8_4:2956642-2956661 Msa1307380:intron 25.0%
! ATCAAAATTTCCTCAAAATC+AGG - chr8_4:2956785-2956804 None:intergenic 25.0%
!!! CGAAATTTTAGAGGAAAAAA+AGG + chr8_4:2956892-2956911 Msa1307380:intron 25.0%
!!! TTAATGGATTTAGTAACTCA+TGG - chr8_4:2956972-2956991 None:intergenic 25.0%
! AATAGATCAAAGTTATAAGC+TGG - chr8_4:2957148-2957167 None:intergenic 25.0%
! ATGATTATAGATTTGCCTAA+GGG + chr8_4:2957289-2957308 Msa1307380:intron 25.0%
! TGGAATTATGATTAGAAAAG+AGG + chr8_4:2957316-2957335 Msa1307380:intron 25.0%
! GGAATTATGATTAGAAAAGA+GGG + chr8_4:2957317-2957336 Msa1307380:intron 25.0%
! GGCAATTAACAAAATAACTT+GGG - chr8_4:2957362-2957381 None:intergenic 25.0%
! TATAATTGCTACTCAGTTTA+CGG - chr8_4:2957383-2957402 None:intergenic 25.0%
!! AAAATTGGGTTCCAAAATTT+TGG - chr8_4:2957593-2957612 None:intergenic 25.0%
! AGGAATATATACATATAACG+TGG + chr8_4:2957648-2957667 Msa1307380:intron 25.0%
! GGAATATATACATATAACGT+GGG + chr8_4:2957649-2957668 Msa1307380:intron 25.0%
! GGAAAAAAAATTGGATTTCT+TGG - chr8_4:2957751-2957770 None:intergenic 25.0%
!! ACTCTCTAAGGAAAAAAAAT+TGG - chr8_4:2957760-2957779 None:intergenic 25.0%
!! ATTTTCCTTAGTTAGTACAT+AGG - chr8_4:2957899-2957918 None:intergenic 25.0%
!!! TATTCAGGTTGTTTGTAAAT+GGG - chr8_4:2958145-2958164 None:intergenic 25.0%
!!! ATATTCAGGTTGTTTGTAAA+TGG - chr8_4:2958146-2958165 None:intergenic 25.0%
! TTTATATCGAATCGTATCTA+TGG - chr8_4:2958202-2958221 None:intergenic 25.0%
! TTGATTTCAAAAATCCTAAC+AGG + chr8_4:2958251-2958270 Msa1307380:intron 25.0%
!! TGATAATTTGCAAATGAATG+TGG - chr8_4:2958437-2958456 None:intergenic 25.0%
! AACTATTGATGAAGATTAGA+CGG + chr8_4:2958785-2958804 Msa1307380:intron 25.0%
! CAATATAGATGGATGTAATT+TGG - chr8_4:2958893-2958912 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG + chr8_4:2958906-2958925 Msa1307380:intron 25.0%
! ATAATACTAACTTTCTTCCT+AGG - chr8_4:2958942-2958961 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG + chr8_4:2959092-2959111 Msa1307380:intron 25.0%
!! ATTTGATGATAAATATGCAG+TGG + chr8_4:2959193-2959212 Msa1307380:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG + chr8_4:2959194-2959213 Msa1307380:CDS 25.0%
!!! GTTTTTTTAAAATGATTCCC+GGG + chr8_4:2959552-2959571 Msa1307380:three_prime_UTR 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG + chr8_4:2959967-2959986 Msa1307380:three_prime_UTR 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG + chr8_4:2959968-2959987 Msa1307380:three_prime_UTR 25.0%
GATATGGCCAAAAAATAGTA+GGG + chr8_4:2956347-2956366 Msa1307380:intron 30.0%
AAAAAATAGTAGGGAGAAGT+GGG + chr8_4:2956356-2956375 Msa1307380:intron 30.0%
ACATACCCAAAATGACAATA+TGG + chr8_4:2956418-2956437 Msa1307380:intron 30.0%
!!! GAGAACCATATTGTCATTTT+GGG - chr8_4:2956426-2956445 None:intergenic 30.0%
AAGACCAGAAAAACTAAAAC+CGG + chr8_4:2956746-2956765 Msa1307380:intron 30.0%
CATCTATGACCTAATCTTAA+TGG - chr8_4:2956988-2957007 None:intergenic 30.0%
TTCCAATTAACAGACAATCT+AGG + chr8_4:2957175-2957194 Msa1307380:intron 30.0%
TCCAATTAACAGACAATCTA+GGG + chr8_4:2957176-2957195 Msa1307380:intron 30.0%
GGTTGTGACTCTTAAATTAA+TGG + chr8_4:2957251-2957270 Msa1307380:intron 30.0%
GGCAAATCTATAATCATCAA+AGG - chr8_4:2957286-2957305 None:intergenic 30.0%
GATGATTATAGATTTGCCTA+AGG + chr8_4:2957288-2957307 Msa1307380:intron 30.0%
TCATAATTCCATAATCCCTT+AGG - chr8_4:2957307-2957326 None:intergenic 30.0%
CGGCAATTAACAAAATAACT+TGG - chr8_4:2957363-2957382 None:intergenic 30.0%
!! CAAGAAAACCATTTTTCCTA+TGG + chr8_4:2957517-2957536 Msa1307380:intron 30.0%
! TTTTGCCTATGTACTAACTA+AGG + chr8_4:2957891-2957910 Msa1307380:intron 30.0%
CCTGGTTCATATAGTAAAAT+AGG - chr8_4:2958090-2958109 None:intergenic 30.0%
! CCTATTTTACTATATGAACC+AGG + chr8_4:2958087-2958106 Msa1307380:intron 30.0%
!! ATTCAGGTTGTTTGTAAATG+GGG - chr8_4:2958144-2958163 None:intergenic 30.0%
ATGGTATTTCATCAGATATG+AGG - chr8_4:2958279-2958298 None:intergenic 30.0%
! GATAAAGGATAGGGATTTTA+TGG - chr8_4:2958298-2958317 None:intergenic 30.0%
GATGATATGGATAAAGGATA+GGG - chr8_4:2958307-2958326 None:intergenic 30.0%
TAATGGGATGATATGGATAA+AGG - chr8_4:2958313-2958332 None:intergenic 30.0%
!! CAATTGATAATGGGATGATA+TGG - chr8_4:2958320-2958339 None:intergenic 30.0%
GAAGAAGTAAGCAATATAGA+TGG - chr8_4:2958904-2958923 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG + chr8_4:2958905-2958924 Msa1307380:intron 30.0%
TGAAGATTCTTAACAAACTC+AGG - chr8_4:2959055-2959074 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG + chr8_4:2959165-2959184 Msa1307380:intron 30.0%
! TATTTTGTTGGCATCATAGT+GGG + chr8_4:2959166-2959185 Msa1307380:intron 30.0%
CAATTACTTTCACTTGTAAC+AGG + chr8_4:2959352-2959371 Msa1307380:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG + chr8_4:2959404-2959423 Msa1307380:CDS 30.0%
TTAATAGGAATTGGTTACAC+TGG + chr8_4:2959413-2959432 Msa1307380:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG + chr8_4:2959414-2959433 Msa1307380:CDS 30.0%
GCATCAAGTGAAATAATGTT+GGG - chr8_4:2959698-2959717 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG - chr8_4:2959699-2959718 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG + chr8_4:2959709-2959728 Msa1307380:three_prime_UTR 30.0%
GATGACCTTATAGAAGATAT+GGG + chr8_4:2959807-2959826 Msa1307380:three_prime_UTR 30.0%
AATATCGGACTCTATCTATA+AGG - chr8_4:2959837-2959856 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG - chr8_4:2959978-2959997 None:intergenic 30.0%
ATGAAAGCTTAGTAGGGATA+TGG + chr8_4:2956331-2956350 Msa1307380:intron 35.0%
GGATATGGCCAAAAAATAGT+AGG + chr8_4:2956346-2956365 Msa1307380:intron 35.0%
!!! CACTTCTCCCTACTATTTTT+TGG - chr8_4:2956357-2956376 None:intergenic 35.0%
CAAAAAATAGTAGGGAGAAG+TGG + chr8_4:2956355-2956374 Msa1307380:intron 35.0%
AAAAATAGTAGGGAGAAGTG+GGG + chr8_4:2956357-2956376 Msa1307380:intron 35.0%
!! GGAGAACCATATTGTCATTT+TGG - chr8_4:2956427-2956446 None:intergenic 35.0%
ACTTTACCATGTTGTGGAAT+TGG - chr8_4:2956529-2956548 None:intergenic 35.0%
TGAGATCAAAACTGCAGTAA+AGG + chr8_4:2956551-2956570 Msa1307380:intron 35.0%
!! GTCATATGGTGTTTTTCAGT+TGG + chr8_4:2956656-2956675 Msa1307380:intron 35.0%
AGACCAGAAAAACTAAAACC+GGG + chr8_4:2956747-2956766 Msa1307380:intron 35.0%
TCAAAATCAGGTCAAAATCG+TGG - chr8_4:2956773-2956792 None:intergenic 35.0%
!! ACGATTTTGACCTGATTTTG+AGG + chr8_4:2956772-2956791 Msa1307380:intron 35.0%
! AAAAAAGGCACATTTGAAGC+TGG + chr8_4:2956907-2956926 Msa1307380:intron 35.0%
TCCCTAGATTGTCTGTTAAT+TGG - chr8_4:2957180-2957199 None:intergenic 35.0%
TCTAGGGATAGAAAGTTGTT+AGG + chr8_4:2957230-2957249 Msa1307380:intron 35.0%
TAGATTTGCCTAAGGGATTA+TGG + chr8_4:2957296-2957315 Msa1307380:intron 35.0%
! ATTGGGTTCCAAAATTTTGG+AGG - chr8_4:2957590-2957609 None:intergenic 35.0%
CAGGAAATTACAACTCTCTA+AGG - chr8_4:2957772-2957791 None:intergenic 35.0%
!! AGCTTTGTTATTGTATGGAC+AGG - chr8_4:2957791-2957810 None:intergenic 35.0%
!! GTTGGAGCTTTGTTATTGTA+TGG - chr8_4:2957796-2957815 None:intergenic 35.0%
TCCAATTTCATAGGAATGAC+TGG + chr8_4:2958112-2958131 Msa1307380:intron 35.0%
!! TTCAGGTTGTTTGTAAATGG+GGG - chr8_4:2958143-2958162 None:intergenic 35.0%
GGATGATATGGATAAAGGAT+AGG - chr8_4:2958308-2958327 None:intergenic 35.0%
TCTGCTTCACTTCAATTTGT+AGG + chr8_4:2958401-2958420 Msa1307380:intron 35.0%
!! CATGATTCTGAGACAACAAA+GGG - chr8_4:2958701-2958720 None:intergenic 35.0%
TCAACTACACTTACAATGAG+TGG - chr8_4:2958733-2958752 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG - chr8_4:2958851-2958870 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG - chr8_4:2958884-2958903 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG + chr8_4:2958982-2959001 Msa1307380:CDS 35.0%
! TCAGTTGATTCAACTTCTGT+TGG - chr8_4:2959028-2959047 None:intergenic 35.0%
CAAGAAGCTGTATGATACAT+AGG + chr8_4:2959073-2959092 Msa1307380:intron 35.0%
! TAAATATGCAGTGGGTTCAT+TGG + chr8_4:2959202-2959221 Msa1307380:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG + chr8_4:2959228-2959247 Msa1307380:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG + chr8_4:2959415-2959434 Msa1307380:CDS 35.0%
! GCATTGATATACATGGTTGA+TGG + chr8_4:2959716-2959735 Msa1307380:three_prime_UTR 35.0%
! GCATTGATATACATGGTTGA+TGG + chr8_4:2959716-2959735 Msa1307380:three_prime_UTR 35.0%
TGGTCAAATACTATTGTGCT+TGG + chr8_4:2959763-2959782 Msa1307380:three_prime_UTR 35.0%
! TGGTGCATTGACATATAGAT+AGG + chr8_4:2959783-2959802 Msa1307380:three_prime_UTR 35.0%
! GGTGCATTGACATATAGATA+GGG + chr8_4:2959784-2959803 Msa1307380:three_prime_UTR 35.0%
! GTGCATTGACATATAGATAG+GGG + chr8_4:2959785-2959804 Msa1307380:three_prime_UTR 35.0%
GGATGACCTTATAGAAGATA+TGG + chr8_4:2959806-2959825 Msa1307380:three_prime_UTR 35.0%
GTCATCCCATATCTTCTATA+AGG - chr8_4:2959815-2959834 None:intergenic 35.0%
GGACTCATGAAAGCTTAGTA+GGG + chr8_4:2956325-2956344 Msa1307380:intron 40.0%
AAAATAGTAGGGAGAAGTGG+GGG + chr8_4:2956358-2956377 Msa1307380:intron 40.0%
GTAACTCTGTTTGAGTAAGC+TGG - chr8_4:2956507-2956526 None:intergenic 40.0%
GAGTTACCAATTCCACAACA+TGG + chr8_4:2956520-2956539 Msa1307380:intron 40.0%
CTCACAACTTTACCATGTTG+TGG - chr8_4:2956535-2956554 None:intergenic 40.0%
!! TCAGGTGTGTTTTTGAGCAA+GGG + chr8_4:2956867-2956886 Msa1307380:intron 40.0%
! GCAAGGGTTCGAAATTTTAG+AGG + chr8_4:2956883-2956902 Msa1307380:intron 40.0%
!! CTCATGGCTATGAGTTTTGA+TGG - chr8_4:2956956-2956975 None:intergenic 40.0%
! AAGTTATAAGCTGGTGTCAG+CGG - chr8_4:2957139-2957158 None:intergenic 40.0%
! CATTTTTCCTATGGCAACCA+GGG + chr8_4:2957526-2957545 Msa1307380:intron 40.0%
ATCAGCTCTATAGAGCTGTT+TGG - chr8_4:2957567-2957586 None:intergenic 40.0%
! GAGCTGATCCTCCAAAATTT+TGG + chr8_4:2957579-2957598 Msa1307380:intron 40.0%
GAAGTTGAACCTATGACCTA+AGG - chr8_4:2957729-2957748 None:intergenic 40.0%
AACCAGGTCTCCAATTTCAT+AGG + chr8_4:2958103-2958122 Msa1307380:intron 40.0%
TTCCTATGAAATTGGAGACC+TGG - chr8_4:2958108-2958127 None:intergenic 40.0%
GCCAGTCATTCCTATGAAAT+TGG - chr8_4:2958116-2958135 None:intergenic 40.0%
! TCAGGTTGTTTGTAAATGGG+GGG - chr8_4:2958142-2958161 None:intergenic 40.0%
TCAGATATGAGGATCCTGTT+AGG - chr8_4:2958268-2958287 None:intergenic 40.0%
TCACTTCAATTTGTAGGAGC+AGG + chr8_4:2958407-2958426 Msa1307380:intron 40.0%
CAGAGAAGAAGAGGAGATTA+AGG - chr8_4:2958580-2958599 None:intergenic 40.0%
CTTAATCTCCTCTTCTTCTC+TGG + chr8_4:2958578-2958597 Msa1307380:intron 40.0%
ATCAAAGAGGTTGGATGAAG+AGG - chr8_4:2958610-2958629 None:intergenic 40.0%
ATCCAACCTCTTTGATTGCA+AGG + chr8_4:2958614-2958633 Msa1307380:intron 40.0%
AACAAGCCTTGCAATCAAAG+AGG - chr8_4:2958623-2958642 None:intergenic 40.0%
!! GCATGATTCTGAGACAACAA+AGG - chr8_4:2958702-2958721 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG - chr8_4:2958869-2958888 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG + chr8_4:2958922-2958941 Msa1307380:intron 40.0%
TGCTCGTGATGTTATGGTAA+TGG + chr8_4:2958988-2959007 Msa1307380:CDS 40.0%
!! GATGTTATGGTAATGGCAAC+AGG + chr8_4:2958995-2959014 Msa1307380:CDS 40.0%
GATAGACTTCCTTTGATTCC+TGG + chr8_4:2959380-2959399 Msa1307380:CDS 40.0%
TCAAGAACTCCAGGAATCAA+AGG - chr8_4:2959392-2959411 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG - chr8_4:2959401-2959420 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG + chr8_4:2959398-2959417 Msa1307380:CDS 40.0%
CCAAATACGCGATATTTGCA+GGG - chr8_4:2959482-2959501 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG - chr8_4:2959483-2959502 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG + chr8_4:2959721-2959740 Msa1307380:three_prime_UTR 40.0%
!! TGGTCAGGCATTGATATACA+TGG + chr8_4:2959736-2959755 Msa1307380:three_prime_UTR 40.0%
GGGACTCATGAAAGCTTAGT+AGG + chr8_4:2956324-2956343 Msa1307380:intron 45.0%
AAATAGTAGGGAGAAGTGGG+GGG + chr8_4:2956359-2956378 Msa1307380:intron 45.0%
!!! TGGCCCGGTTTTAGTTTTTC+TGG - chr8_4:2956753-2956772 None:intergenic 45.0%
!! GTCAGGTGTGTTTTTGAGCA+AGG + chr8_4:2956866-2956885 Msa1307380:intron 45.0%
CCTGGTTGCCATAGGAAAAA+TGG - chr8_4:2957528-2957547 None:intergenic 45.0%
!! CCATTTTTCCTATGGCAACC+AGG + chr8_4:2957525-2957544 Msa1307380:intron 45.0%
AGAGCTGTTTGGATTCCCAA+GGG - chr8_4:2957556-2957575 None:intergenic 45.0%
TAGAGCTGTTTGGATTCCCA+AGG - chr8_4:2957557-2957576 None:intergenic 45.0%
CAACACAAAACACACCCGTT+GGG - chr8_4:2957701-2957720 None:intergenic 45.0%
! GTTTTGTGTTGGAGCTCCTT+AGG + chr8_4:2957710-2957729 Msa1307380:intron 45.0%
GGATATAGCCAGAGAAGAAG+AGG - chr8_4:2958589-2958608 None:intergenic 45.0%
AGCCTTGCAATCAAAGAGGT+TGG - chr8_4:2958619-2958638 None:intergenic 45.0%
CTCACACATTGTGGAGAAGA+AGG - chr8_4:2958657-2958676 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG - chr8_4:2958693-2958712 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG + chr8_4:2959250-2959269 Msa1307380:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG + chr8_4:2959479-2959498 Msa1307380:CDS 45.0%
CTATCAGCTTAAATGGACCC+GGG - chr8_4:2959572-2959591 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG - chr8_4:2959573-2959592 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG + chr8_4:2959573-2959592 Msa1307380:three_prime_UTR 45.0%
CTGCCACCTATCAGCTTAAA+TGG - chr8_4:2959579-2959598 None:intergenic 45.0%
!!! GAAAAAAAAAATTATTTTAT+CGG + chr8_4:2958061-2958080 Msa1307380:intron 5.0%
ATCAGGTCAAAATCGTGGCC+CGG - chr8_4:2956768-2956787 None:intergenic 50.0%
!! ATTTTGTAGGCGCTGCCCAA+CGG + chr8_4:2957683-2957702 Msa1307380:intron 50.0%
CCAACACAAAACACACCCGT+TGG - chr8_4:2957702-2957721 None:intergenic 50.0%
! CCAACGGGTGTGTTTTGTGT+TGG + chr8_4:2957699-2957718 Msa1307380:intron 50.0%
GTTGGAGCTCCTTAGGTCAT+AGG + chr8_4:2957717-2957736 Msa1307380:intron 50.0%
GTGGAAAGGCTCACACATTG+TGG - chr8_4:2958666-2958685 None:intergenic 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG - chr8_4:2958680-2958699 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG - chr8_4:2958685-2958704 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG + chr8_4:2959239-2959258 Msa1307380:CDS 50.0%
CCGGGTCCATTTAAGCTGAT+AGG + chr8_4:2959570-2959589 Msa1307380:three_prime_UTR 50.0%
!! TTTTGTAGGCGCTGCCCAAC+GGG + chr8_4:2957684-2957703 Msa1307380:intron 55.0%
! TAGGGAGAAGTGGGGGGTGT+GGG + chr8_4:2956365-2956384 Msa1307380:intron 60.0%
! AGAAGTGGGGGGTGTGGGTT+GGG + chr8_4:2956370-2956389 Msa1307380:intron 60.0%
GTAGGGAGAAGTGGGGGGTG+TGG + chr8_4:2956364-2956383 Msa1307380:intron 65.0%
! GAGAAGTGGGGGGTGTGGGT+TGG + chr8_4:2956369-2956388 Msa1307380:intron 65.0%
! GAAGTGGGGGGTGTGGGTTG+GGG + chr8_4:2956371-2956390 Msa1307380:intron 65.0%
!! AAGTGGGGGGTGTGGGTTGG+GGG + chr8_4:2956372-2956391 Msa1307380:intron 65.0%
GGGACGACCCTGGTTGCCAT+AGG - chr8_4:2957536-2957555 None:intergenic 65.0%
TGGCAACCAGGGTCGTCCCT+TGG + chr8_4:2957537-2957556 Msa1307380:intron 65.0%
GGCAACCAGGGTCGTCCCTT+GGG + chr8_4:2957538-2957557 Msa1307380:intron 65.0%
GGATTCCCAAGGGACGACCC+TGG - chr8_4:2957546-2957565 None:intergenic 65.0%
!! AGTGGGGGGTGTGGGTTGGG+GGG + chr8_4:2956373-2956392 Msa1307380:intron 70.0%
!! GTGGGGGGTGTGGGTTGGGG+GGG + chr8_4:2956374-2956393 Msa1307380:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 2956273 2960001 2956273 ID=Msa1307380;Name=Msa1307380
chr8_4 mRNA 2956273 2960001 2956273 ID=Msa1307380-mRNA-1;Parent=Msa1307380;Name=Msa1307380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.66|0.75|0.75|1|1|4|493|109
chr8_4 exon 2956273 2956276 2956273 ID=Msa1307380-mRNA-1:exon:869;Parent=Msa1307380-mRNA-1
chr8_4 exon 2958978 2959081 2958978 ID=Msa1307380-mRNA-1:exon:870;Parent=Msa1307380-mRNA-1
chr8_4 exon 2959185 2959271 2959185 ID=Msa1307380-mRNA-1:exon:871;Parent=Msa1307380-mRNA-1
chr8_4 exon 2959374 2960001 2959374 ID=Msa1307380-mRNA-1:exon:872;Parent=Msa1307380-mRNA-1
chr8_4 CDS 2956273 2956276 2956273 ID=Msa1307380-mRNA-1:cds;Parent=Msa1307380-mRNA-1
chr8_4 CDS 2958978 2959081 2958978 ID=Msa1307380-mRNA-1:cds;Parent=Msa1307380-mRNA-1
chr8_4 CDS 2959185 2959271 2959185 ID=Msa1307380-mRNA-1:cds;Parent=Msa1307380-mRNA-1
chr8_4 CDS 2959374 2959508 2959374 ID=Msa1307380-mRNA-1:cds;Parent=Msa1307380-mRNA-1
chr8_4 three_prime_UTR 2959509 2960001 2959509 ID=Msa1307380-mRNA-1:three_prime_utr;Parent=Msa1307380-mRNA-1
Gene Sequence

>Msa1307380

ATGGATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGAATCAACTGAACTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGGCAATTGATAGACTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGGTAAGTCAAATAAATACACTTAGATTTAAATATATGACTGGTCCCTGCAAATATCGCGTATTTGGTTTTTAG

Protein sequence

>Msa1307380

MDRKIARDVMVMATGDAPTEVESTELPEFVKNLQEAWDKFDDKYAVGSLVVASVFALWSSAGFISAIDRLPLIPGVLELIGIGYTGVSQINTLRFKYMTGPCKYRVFGF*