AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453900 MtrunA17_Chr5g0439941 67.416 178 14 3 1 178 1 134 2.63e-66 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453900 AT3G44020.1 43.443 122 20 3 62 178 58 135 8.93e-21 84.3

Find 27 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCCATTAAACAGCAAAA+TGG 0.276035 tig0034931:+2001 Msa1453900:intergenic
TTCTCTCTTCCTTGGCTTCA+AGG 0.279546 tig0034931:-1907 Msa1453900:intron
TCTTGCTACTGTTAGTGTTT+TGG 0.296738 tig0034931:-1943 Msa1453900:CDS
ATTGCTCTTTCTCTCTTCCT+TGG 0.362846 tig0034931:-1915 Msa1453900:CDS
AAGCCATTAAACAGCAAAAT+GGG 0.370822 tig0034931:+2002 Msa1453900:intergenic
GTCCATGATCATCAAGAATC+TGG 0.395675 tig0034931:+2025 Msa1453900:intergenic
TTCGTCTGCATTTGGAGGAT+TGG 0.450992 tig0034931:+2060 Msa1453900:intergenic
GGAGGATTGGAAGTAGAACT+TGG 0.460291 tig0034931:+2073 Msa1453900:intergenic
ATCCAGATTCTTGATGATCA+TGG 0.464032 tig0034931:-2027 Msa1453900:CDS
CTTGAAGAAGAAGAAGATAG+AGG 0.483415 tig0034931:+2167 Msa1453900:intergenic
AGGAGAAGAAGAAAGATGAA+TGG 0.496278 tig0034931:+2142 Msa1453900:intergenic
ATTATGAATGCTTTATACGT+TGG 0.501779 tig0034931:-817 Msa1453900:CDS
TTGGATGAAGAAGAAGGTTG+TGG 0.522130 tig0034931:+2092 Msa1453900:intergenic
TAGAACTTGGATGAAGAAGA+AGG 0.541383 tig0034931:+2086 Msa1453900:intergenic
TATACGTTGGACTGAGAGTG+TGG 0.546620 tig0034931:-804 Msa1453900:CDS
GTTGCCACCACATCGTTCAC+AGG 0.563597 tig0034931:+901 Msa1453900:intergenic
AGAGAAGATGTAGAAGAACA+AGG 0.567040 tig0034931:+2122 Msa1453900:intergenic
TTGTAGTTACCTTGAAGCCA+AGG 0.574832 tig0034931:+1898 Msa1453900:intergenic
GTAATTTGTCATACCCTCAC+TGG 0.580530 tig0034931:+763 Msa1453900:intergenic
ATACGTTGGACTGAGAGTGT+GGG 0.587344 tig0034931:-803 Msa1453900:CDS
TGTGAACGATGTGGTGGCAA+CGG 0.616549 tig0034931:-899 Msa1453900:CDS
TACGTTGGACTGAGAGTGTG+GGG 0.633826 tig0034931:-802 Msa1453900:CDS
CCACATCGTTCACAGGACAC+CGG 0.651382 tig0034931:+908 Msa1453900:intergenic
AAGGAAGAGAGAAAGAGCAA+TGG 0.658609 tig0034931:+1917 Msa1453900:intergenic
GTGTCCTGTGAACGATGTGG+TGG 0.669294 tig0034931:-905 Msa1453900:CDS
AGCCATTAAACAGCAAAATG+GGG 0.675128 tig0034931:+2003 Msa1453900:intergenic
CCGGTGTCCTGTGAACGATG+TGG 0.722265 tig0034931:-908 Msa1453900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAACAAATACATTATTA+TGG + tig0034931:386-405 Msa1453900:intergenic 15.0%
!!! TGTTTTTGTTAATATAGTTA+TGG - tig0034931:401-420 Msa1453900:intron 15.0%
!! GAAATGTTTGATAAAATTAA+CGG + tig0034931:749-768 Msa1453900:intergenic 15.0%
!! AAACAACAAATACATTATTA+TGG + tig0034931:386-405 Msa1453900:intergenic 15.0%
!!! TGTTTTTGTTAATATAGTTA+TGG - tig0034931:401-420 Msa1453900:intron 15.0%
!! GAAATGTTTGATAAAATTAA+CGG + tig0034931:749-768 Msa1453900:intergenic 15.0%
!!! TCTTTTGCAAAATTTTTACA+CGG - tig0034931:951-970 Msa1453900:intron 20.0%
!!! TAATGTTATTCATGATTTTG+TGG - tig0034931:987-1006 Msa1453900:intron 20.0%
!!! AATGTTATTCATGATTTTGT+GGG - tig0034931:988-1007 Msa1453900:intron 20.0%
!! ACAAACTTATTATCAATAAC+TGG + tig0034931:1051-1070 Msa1453900:intergenic 20.0%
!!! ATTTTTAATATTACCAGTGA+GGG - tig0034931:1439-1458 Msa1453900:intron 20.0%
!!! TTAAAAACATTAACTTGACT+AGG - tig0034931:1479-1498 Msa1453900:intron 20.0%
!!! TTATAATTCTGGTTCAAAAT+TGG + tig0034931:1566-1585 Msa1453900:intergenic 20.0%
!! AATAGAACAGTTAAAACATT+GGG + tig0034931:2067-2086 Msa1453900:intergenic 20.0%
!!! TCTTTTGCAAAATTTTTACA+CGG - tig0034931:951-970 Msa1453900:intron 20.0%
!!! TAATGTTATTCATGATTTTG+TGG - tig0034931:987-1006 Msa1453900:intron 20.0%
!!! AATGTTATTCATGATTTTGT+GGG - tig0034931:988-1007 Msa1453900:intron 20.0%
!! ACAAACTTATTATCAATAAC+TGG + tig0034931:1051-1070 Msa1453900:intergenic 20.0%
!!! ATTTTTAATATTACCAGTGA+GGG - tig0034931:1439-1458 Msa1453900:intron 20.0%
!!! TTAAAAACATTAACTTGACT+AGG - tig0034931:1479-1498 Msa1453900:intron 20.0%
!!! TTATAATTCTGGTTCAAAAT+TGG + tig0034931:1566-1585 Msa1453900:intergenic 20.0%
!! AATAGAACAGTTAAAACATT+GGG + tig0034931:2067-2086 Msa1453900:intergenic 20.0%
!!! AGAAATGTGTTCATTTTAGT+GGG - tig0034931:877-896 Msa1453900:CDS 25.0%
! AAATCAAACTCATGAATTGA+TGG + tig0034931:919-938 Msa1453900:intergenic 25.0%
! TTGATTGGAAAAACCTTTAT+TGG - tig0034931:1096-1115 Msa1453900:intron 25.0%
! TGATTGGAAAAACCTTTATT+GGG - tig0034931:1097-1116 Msa1453900:intron 25.0%
! GAACTTCAGATATCTATTAT+AGG - tig0034931:1142-1161 Msa1453900:intron 25.0%
!! TTTGGTAACAATAAGATTGT+GGG - tig0034931:1224-1243 Msa1453900:intron 25.0%
!!! TCAATGTTGATACTTTGTTT+TGG - tig0034931:1247-1266 Msa1453900:intron 25.0%
! ATTATGAATGCTTTATACGT+TGG - tig0034931:1398-1417 Msa1453900:intron 25.0%
!! CATTTTTAATATTACCAGTG+AGG - tig0034931:1438-1457 Msa1453900:intron 25.0%
!! ACCAGAATTATAAGCTATTT+TGG - tig0034931:1573-1592 Msa1453900:intron 25.0%
! TCCAAAATAGCTTATAATTC+TGG + tig0034931:1577-1596 Msa1453900:intergenic 25.0%
! AATAAAAACATGGTAACTAG+TGG + tig0034931:1731-1750 Msa1453900:intergenic 25.0%
! CAATAGAACAGTTAAAACAT+TGG + tig0034931:2068-2087 Msa1453900:intergenic 25.0%
! TGCTTTGTATATGAAGTAAA+TGG - tig0034931:2119-2138 Msa1453900:CDS 25.0%
! GCTTTGTATATGAAGTAAAT+GGG - tig0034931:2120-2139 Msa1453900:CDS 25.0%
!!! AAATGTGTTTTTTGCAACAA+CGG - tig0034931:2183-2202 Msa1453900:CDS 25.0%
!!! AGAAATGTGTTCATTTTAGT+GGG - tig0034931:877-896 Msa1453900:CDS 25.0%
! AAATCAAACTCATGAATTGA+TGG + tig0034931:919-938 Msa1453900:intergenic 25.0%
! TTGATTGGAAAAACCTTTAT+TGG - tig0034931:1096-1115 Msa1453900:intron 25.0%
! TGATTGGAAAAACCTTTATT+GGG - tig0034931:1097-1116 Msa1453900:intron 25.0%
! GAACTTCAGATATCTATTAT+AGG - tig0034931:1142-1161 Msa1453900:intron 25.0%
!! TTTGGTAACAATAAGATTGT+GGG - tig0034931:1224-1243 Msa1453900:intron 25.0%
!!! TCAATGTTGATACTTTGTTT+TGG - tig0034931:1247-1266 Msa1453900:intron 25.0%
! ATTATGAATGCTTTATACGT+TGG - tig0034931:1398-1417 Msa1453900:intron 25.0%
!! CATTTTTAATATTACCAGTG+AGG - tig0034931:1438-1457 Msa1453900:intron 25.0%
!! ACCAGAATTATAAGCTATTT+TGG - tig0034931:1573-1592 Msa1453900:intron 25.0%
! TCCAAAATAGCTTATAATTC+TGG + tig0034931:1577-1596 Msa1453900:intergenic 25.0%
! AATAAAAACATGGTAACTAG+TGG + tig0034931:1731-1750 Msa1453900:intergenic 25.0%
! CAATAGAACAGTTAAAACAT+TGG + tig0034931:2068-2087 Msa1453900:intergenic 25.0%
! TGCTTTGTATATGAAGTAAA+TGG - tig0034931:2119-2138 Msa1453900:CDS 25.0%
! GCTTTGTATATGAAGTAAAT+GGG - tig0034931:2120-2139 Msa1453900:CDS 25.0%
!!! AAATGTGTTTTTTGCAACAA+CGG - tig0034931:2183-2202 Msa1453900:CDS 25.0%
! ATCAAGAATCTGGATTTTGT+TGG + tig0034931:183-202 None:intergenic 30.0%
AAGCCATTAAACAGCAAAAT+GGG + tig0034931:216-235 Msa1453900:intergenic 30.0%
TAAGCCATTAAACAGCAAAA+TGG + tig0034931:217-236 Msa1453900:intergenic 30.0%
!!! ATTTTGCTGTTTAATGGCTT+AGG - tig0034931:216-235 Msa1453900:intron 30.0%
TTTGGTAAAAACGTATCAGA+TGG + tig0034931:815-834 Msa1453900:intergenic 30.0%
! TTTTTACCAAACAGAACCTT+AGG - tig0034931:824-843 Msa1453900:CDS 30.0%
TAGTAACCAAAAAGAACCTT+AGG - tig0034931:853-872 Msa1453900:CDS 30.0%
! CAGAAATGTGTTCATTTTAG+TGG - tig0034931:876-895 Msa1453900:CDS 30.0%
ATTGATGGAATTAGTCCATT+TGG + tig0034931:904-923 Msa1453900:intergenic 30.0%
!!! TGATTTTGTGGGTTTTAAGA+TGG - tig0034931:999-1018 Msa1453900:intron 30.0%
ATTCAATTATGAGTTTCTGC+TGG - tig0034931:1071-1090 Msa1453900:intron 30.0%
GATTGGAAAAACCTTTATTG+GGG - tig0034931:1098-1117 Msa1453900:intron 30.0%
! GTTTGGTAACAATAAGATTG+TGG - tig0034931:1223-1242 Msa1453900:intron 30.0%
!!! GATACTTTGTTTTGGACTTT+TGG - tig0034931:1255-1274 Msa1453900:intron 30.0%
!!! AGATTGTTGTGCTTTTTTGT+TGG - tig0034931:1366-1385 Msa1453900:intron 30.0%
!!! TGTGCTTTTTTGTTGGTTTA+TGG - tig0034931:1373-1392 Msa1453900:intron 30.0%
GGGTAAGGAAAATAAAAACA+TGG + tig0034931:1741-1760 Msa1453900:intergenic 30.0%
GGATAAAGCAGATATAGAAA+GGG + tig0034931:1766-1785 Msa1453900:intergenic 30.0%
AGGATAAAGCAGATATAGAA+AGG + tig0034931:1767-1786 Msa1453900:intergenic 30.0%
! ATCAAGAATCTGGATTTTGT+TGG + tig0034931:183-202 Msa1453900:intergenic 30.0%
AAGCCATTAAACAGCAAAAT+GGG + tig0034931:216-235 Msa1453900:intergenic 30.0%
TAAGCCATTAAACAGCAAAA+TGG + tig0034931:217-236 Msa1453900:intergenic 30.0%
!!! ATTTTGCTGTTTAATGGCTT+AGG - tig0034931:216-235 Msa1453900:intron 30.0%
TTTGGTAAAAACGTATCAGA+TGG + tig0034931:815-834 Msa1453900:intergenic 30.0%
! TTTTTACCAAACAGAACCTT+AGG - tig0034931:824-843 Msa1453900:CDS 30.0%
TAGTAACCAAAAAGAACCTT+AGG - tig0034931:853-872 Msa1453900:CDS 30.0%
! CAGAAATGTGTTCATTTTAG+TGG - tig0034931:876-895 Msa1453900:CDS 30.0%
ATTGATGGAATTAGTCCATT+TGG + tig0034931:904-923 Msa1453900:intergenic 30.0%
!!! TGATTTTGTGGGTTTTAAGA+TGG - tig0034931:999-1018 Msa1453900:intron 30.0%
ATTCAATTATGAGTTTCTGC+TGG - tig0034931:1071-1090 Msa1453900:intron 30.0%
GATTGGAAAAACCTTTATTG+GGG - tig0034931:1098-1117 Msa1453900:intron 30.0%
! GTTTGGTAACAATAAGATTG+TGG - tig0034931:1223-1242 Msa1453900:intron 30.0%
!!! GATACTTTGTTTTGGACTTT+TGG - tig0034931:1255-1274 Msa1453900:intron 30.0%
!!! AGATTGTTGTGCTTTTTTGT+TGG - tig0034931:1366-1385 Msa1453900:intron 30.0%
!!! TGTGCTTTTTTGTTGGTTTA+TGG - tig0034931:1373-1392 Msa1453900:intron 30.0%
GGGTAAGGAAAATAAAAACA+TGG + tig0034931:1741-1760 Msa1453900:intergenic 30.0%
GGATAAAGCAGATATAGAAA+GGG + tig0034931:1766-1785 Msa1453900:intergenic 30.0%
AGGATAAAGCAGATATAGAA+AGG + tig0034931:1767-1786 Msa1453900:intergenic 30.0%
CTTGAAGAAGAAGAAGATAG+AGG + tig0034931:51-70 None:intergenic 35.0%
AGGAGAAGAAGAAAGATGAA+TGG + tig0034931:76-95 None:intergenic 35.0%
AGAGAAGATGTAGAAGAACA+AGG + tig0034931:96-115 None:intergenic 35.0%
TAGAACTTGGATGAAGAAGA+AGG + tig0034931:132-151 None:intergenic 35.0%
! ATCCAGATTCTTGATGATCA+TGG - tig0034931:188-207 Msa1453900:intron 35.0%
AGCCATTAAACAGCAAAATG+GGG + tig0034931:215-234 Msa1453900:intergenic 35.0%
! TCTTGCTACTGTTAGTGTTT+TGG - tig0034931:272-291 Msa1453900:intron 35.0%
! GTAGTGATTCTTGTTTCATG+AGG - tig0034931:549-568 Msa1453900:intron 35.0%
AGAAGTAGCGTCTCAAAAAA+TGG + tig0034931:601-620 Msa1453900:intergenic 35.0%
! TTTCTGCCTAAGGTTCTTTT+TGG + tig0034931:862-881 Msa1453900:intergenic 35.0%
AATGAACACATTTCTGCCTA+AGG + tig0034931:872-891 Msa1453900:intergenic 35.0%
!! TTCATTTTAGTGGGTCCAAA+TGG - tig0034931:886-905 Msa1453900:CDS 35.0%
!!! TTGTGGGTTTTAAGATGGTA+TGG - tig0034931:1004-1023 Msa1453900:intron 35.0%
CCAAACGAAATAACTTCTTC+TGG + tig0034931:1209-1228 Msa1453900:intergenic 35.0%
! CCAGAAGAAGTTATTTCGTT+TGG - tig0034931:1206-1225 Msa1453900:intron 35.0%
!!! GACTTTTGGTAATGAGTGAT+GGG - tig0034931:1269-1288 Msa1453900:intron 35.0%
AAAGCAGATATAGAAAGGGA+GGG + tig0034931:1762-1781 Msa1453900:intergenic 35.0%
TAAAGCAGATATAGAAAGGG+AGG + tig0034931:1763-1782 Msa1453900:intergenic 35.0%
GTAGATGGAGATACATTGTA+TGG - tig0034931:1806-1825 Msa1453900:intron 35.0%
TCTACATAGGTCACTGTAAT+GGG - tig0034931:1971-1990 Msa1453900:CDS 35.0%
! TTAAAACATTGGGAGTGCAA+TGG + tig0034931:2057-2076 Msa1453900:intergenic 35.0%
CTCTTGATTAAGGAACAAAC+AGG + tig0034931:2093-2112 Msa1453900:intergenic 35.0%
CTGTTTGTTCCTTAATCAAG+AGG - tig0034931:2091-2110 Msa1453900:CDS 35.0%
TCATATTGTTGAGTGTTAGC+AGG - tig0034931:2153-2172 Msa1453900:CDS 35.0%
CTTGAAGAAGAAGAAGATAG+AGG + tig0034931:51-70 Msa1453900:intergenic 35.0%
AGGAGAAGAAGAAAGATGAA+TGG + tig0034931:76-95 Msa1453900:intergenic 35.0%
AGAGAAGATGTAGAAGAACA+AGG + tig0034931:96-115 Msa1453900:intergenic 35.0%
TAGAACTTGGATGAAGAAGA+AGG + tig0034931:132-151 Msa1453900:intergenic 35.0%
! ATCCAGATTCTTGATGATCA+TGG - tig0034931:188-207 Msa1453900:intron 35.0%
AGCCATTAAACAGCAAAATG+GGG + tig0034931:215-234 Msa1453900:intergenic 35.0%
! TCTTGCTACTGTTAGTGTTT+TGG - tig0034931:272-291 Msa1453900:intron 35.0%
! GTAGTGATTCTTGTTTCATG+AGG - tig0034931:549-568 Msa1453900:intron 35.0%
AGAAGTAGCGTCTCAAAAAA+TGG + tig0034931:601-620 Msa1453900:intergenic 35.0%
! TTTCTGCCTAAGGTTCTTTT+TGG + tig0034931:862-881 Msa1453900:intergenic 35.0%
AATGAACACATTTCTGCCTA+AGG + tig0034931:872-891 Msa1453900:intergenic 35.0%
!! TTCATTTTAGTGGGTCCAAA+TGG - tig0034931:886-905 Msa1453900:CDS 35.0%
!!! TTGTGGGTTTTAAGATGGTA+TGG - tig0034931:1004-1023 Msa1453900:intron 35.0%
CCAAACGAAATAACTTCTTC+TGG + tig0034931:1209-1228 Msa1453900:intergenic 35.0%
! CCAGAAGAAGTTATTTCGTT+TGG - tig0034931:1206-1225 Msa1453900:intron 35.0%
!!! GACTTTTGGTAATGAGTGAT+GGG - tig0034931:1269-1288 Msa1453900:intron 35.0%
AAAGCAGATATAGAAAGGGA+GGG + tig0034931:1762-1781 Msa1453900:intergenic 35.0%
TAAAGCAGATATAGAAAGGG+AGG + tig0034931:1763-1782 Msa1453900:intergenic 35.0%
GTAGATGGAGATACATTGTA+TGG - tig0034931:1806-1825 Msa1453900:intron 35.0%
TCTACATAGGTCACTGTAAT+GGG - tig0034931:1971-1990 Msa1453900:CDS 35.0%
! TTAAAACATTGGGAGTGCAA+TGG + tig0034931:2057-2076 Msa1453900:intergenic 35.0%
CTCTTGATTAAGGAACAAAC+AGG + tig0034931:2093-2112 Msa1453900:intergenic 35.0%
CTGTTTGTTCCTTAATCAAG+AGG - tig0034931:2091-2110 Msa1453900:CDS 35.0%
TCATATTGTTGAGTGTTAGC+AGG - tig0034931:2153-2172 Msa1453900:CDS 35.0%
TTGGATGAAGAAGAAGGTTG+TGG + tig0034931:126-145 None:intergenic 40.0%
!!! TGTTGGTTTTCGTCTGCATT+TGG + tig0034931:166-185 None:intergenic 40.0%
GTCCATGATCATCAAGAATC+TGG + tig0034931:193-212 Msa1453900:intergenic 40.0%
!!! GACCCCATTTTGCTGTTTAA+TGG - tig0034931:210-229 Msa1453900:intron 40.0%
AAGGAAGAGAGAAAGAGCAA+TGG + tig0034931:301-320 Msa1453900:intergenic 40.0%
ATTGCTCTTTCTCTCTTCCT+TGG - tig0034931:300-319 Msa1453900:intron 40.0%
TTGTAGTTACCTTGAAGCCA+AGG + tig0034931:320-339 Msa1453900:intergenic 40.0%
!! GTTTTTCGAAACCACTAGCT+CGG - tig0034931:502-521 Msa1453900:intron 40.0%
!! ATTTTGATCATCCGAGCTAG+TGG + tig0034931:516-535 Msa1453900:intergenic 40.0%
!!! TTTTGAGACGCTACTTCTAG+TGG - tig0034931:603-622 Msa1453900:intron 40.0%
TTGGTTACTATACACGCCTA+AGG + tig0034931:843-862 Msa1453900:intergenic 40.0%
!!! GAGTTTCTGCTGGTTTTGAT+TGG - tig0034931:1081-1100 Msa1453900:intron 40.0%
TGGAAAAACCTTTATTGGGG+TGG - tig0034931:1101-1120 Msa1453900:intron 40.0%
GGAAAAACCTTTATTGGGGT+GGG - tig0034931:1102-1121 Msa1453900:intron 40.0%
GAAAAACCTTTATTGGGGTG+GGG - tig0034931:1103-1122 Msa1453900:intron 40.0%
AAAAACCTTTATTGGGGTGG+GGG - tig0034931:1104-1123 Msa1453900:intron 40.0%
!!! GGACTTTTGGTAATGAGTGA+TGG - tig0034931:1268-1287 Msa1453900:intron 40.0%
!! AATGAGTGATGGGATTTTGC+AGG - tig0034931:1279-1298 Msa1453900:intron 40.0%
!! ATGAGTGATGGGATTTTGCA+GGG - tig0034931:1280-1299 Msa1453900:intron 40.0%
! GTAATTTGTCATACCCTCAC+TGG + tig0034931:1455-1474 Msa1453900:intergenic 40.0%
CTAGGACAGCTGTTGTTAAA+AGG - tig0034931:1497-1516 Msa1453900:intron 40.0%
AAGCAGATATAGAAAGGGAG+GGG + tig0034931:1761-1780 Msa1453900:intergenic 40.0%
! ATCAAGTATCGCTCTGTAGA+TGG - tig0034931:1791-1810 Msa1453900:intron 40.0%
ATTGTATGGCTATGTGTCGT+TGG - tig0034931:1820-1839 Msa1453900:intron 40.0%
GTCAGTGTCAGTGTTGTATT+AGG + tig0034931:1874-1893 Msa1453900:intergenic 40.0%
! TGAACTACACACGTGAGTTT+TGG - tig0034931:1931-1950 Msa1453900:CDS 40.0%
CTATGTAGACATGTCCAACT+CGG + tig0034931:1960-1979 Msa1453900:intergenic 40.0%
GTCTACATAGGTCACTGTAA+TGG - tig0034931:1970-1989 Msa1453900:CDS 40.0%
CTACATAGGTCACTGTAATG+GGG - tig0034931:1972-1991 Msa1453900:CDS 40.0%
AGCAAGACTCCTCTTGATTA+AGG + tig0034931:2103-2122 Msa1453900:intergenic 40.0%
TATTGTTGAGTGTTAGCAGG+TGG - tig0034931:2156-2175 Msa1453900:CDS 40.0%
CGGCAAGATGAAAAAAGAGA+CGG - tig0034931:2203-2222 Msa1453900:exon 40.0%
GGCAAGATGAAAAAAGAGAC+GGG - tig0034931:2204-2223 Msa1453900:exon 40.0%
GCAAGATGAAAAAAGAGACG+GGG - tig0034931:2205-2224 Msa1453900:exon 40.0%
TTGGATGAAGAAGAAGGTTG+TGG + tig0034931:126-145 Msa1453900:intergenic 40.0%
!!! TGTTGGTTTTCGTCTGCATT+TGG + tig0034931:166-185 Msa1453900:intergenic 40.0%
GTCCATGATCATCAAGAATC+TGG + tig0034931:193-212 Msa1453900:intergenic 40.0%
!!! GACCCCATTTTGCTGTTTAA+TGG - tig0034931:210-229 Msa1453900:intron 40.0%
AAGGAAGAGAGAAAGAGCAA+TGG + tig0034931:301-320 Msa1453900:intergenic 40.0%
ATTGCTCTTTCTCTCTTCCT+TGG - tig0034931:300-319 Msa1453900:intron 40.0%
TTGTAGTTACCTTGAAGCCA+AGG + tig0034931:320-339 Msa1453900:intergenic 40.0%
!! GTTTTTCGAAACCACTAGCT+CGG - tig0034931:502-521 Msa1453900:intron 40.0%
!! ATTTTGATCATCCGAGCTAG+TGG + tig0034931:516-535 Msa1453900:intergenic 40.0%
!!! TTTTGAGACGCTACTTCTAG+TGG - tig0034931:603-622 Msa1453900:intron 40.0%
TTGGTTACTATACACGCCTA+AGG + tig0034931:843-862 Msa1453900:intergenic 40.0%
!!! GAGTTTCTGCTGGTTTTGAT+TGG - tig0034931:1081-1100 Msa1453900:intron 40.0%
TGGAAAAACCTTTATTGGGG+TGG - tig0034931:1101-1120 Msa1453900:intron 40.0%
GGAAAAACCTTTATTGGGGT+GGG - tig0034931:1102-1121 Msa1453900:intron 40.0%
GAAAAACCTTTATTGGGGTG+GGG - tig0034931:1103-1122 Msa1453900:intron 40.0%
AAAAACCTTTATTGGGGTGG+GGG - tig0034931:1104-1123 Msa1453900:intron 40.0%
!!! GGACTTTTGGTAATGAGTGA+TGG - tig0034931:1268-1287 Msa1453900:intron 40.0%
!! AATGAGTGATGGGATTTTGC+AGG - tig0034931:1279-1298 Msa1453900:intron 40.0%
!! ATGAGTGATGGGATTTTGCA+GGG - tig0034931:1280-1299 Msa1453900:intron 40.0%
! GTAATTTGTCATACCCTCAC+TGG + tig0034931:1455-1474 Msa1453900:intergenic 40.0%
CTAGGACAGCTGTTGTTAAA+AGG - tig0034931:1497-1516 Msa1453900:intron 40.0%
AAGCAGATATAGAAAGGGAG+GGG + tig0034931:1761-1780 Msa1453900:intergenic 40.0%
! ATCAAGTATCGCTCTGTAGA+TGG - tig0034931:1791-1810 Msa1453900:intron 40.0%
ATTGTATGGCTATGTGTCGT+TGG - tig0034931:1820-1839 Msa1453900:intron 40.0%
GTCAGTGTCAGTGTTGTATT+AGG + tig0034931:1874-1893 Msa1453900:intergenic 40.0%
! TGAACTACACACGTGAGTTT+TGG - tig0034931:1931-1950 Msa1453900:CDS 40.0%
CTATGTAGACATGTCCAACT+CGG + tig0034931:1960-1979 Msa1453900:intergenic 40.0%
GTCTACATAGGTCACTGTAA+TGG - tig0034931:1970-1989 Msa1453900:CDS 40.0%
CTACATAGGTCACTGTAATG+GGG - tig0034931:1972-1991 Msa1453900:CDS 40.0%
AGCAAGACTCCTCTTGATTA+AGG + tig0034931:2103-2122 Msa1453900:intergenic 40.0%
TATTGTTGAGTGTTAGCAGG+TGG - tig0034931:2156-2175 Msa1453900:CDS 40.0%
CGGCAAGATGAAAAAAGAGA+CGG - tig0034931:2203-2222 Msa1453900:exon 40.0%
GGCAAGATGAAAAAAGAGAC+GGG - tig0034931:2204-2223 Msa1453900:exon 40.0%
GCAAGATGAAAAAAGAGACG+GGG - tig0034931:2205-2224 Msa1453900:exon 40.0%
! AAGAGTGCAGTGAAAAAGCG+TGG + tig0034931:25-44 None:intergenic 45.0%
GGAGGATTGGAAGTAGAACT+TGG + tig0034931:145-164 None:intergenic 45.0%
TTCGTCTGCATTTGGAGGAT+TGG + tig0034931:158-177 None:intergenic 45.0%
! TGGTTTTCGTCTGCATTTGG+AGG + tig0034931:163-182 None:intergenic 45.0%
TTCTCTCTTCCTTGGCTTCA+AGG - tig0034931:308-327 Msa1453900:intron 45.0%
TACACGCCTAAGGTTCTGTT+TGG + tig0034931:833-852 Msa1453900:intergenic 45.0%
TATACGTTGGACTGAGAGTG+TGG - tig0034931:1411-1430 Msa1453900:intron 45.0%
! ATACGTTGGACTGAGAGTGT+GGG - tig0034931:1412-1431 Msa1453900:intron 45.0%
GGACAGCTGTTGTTAAAAGG+AGG - tig0034931:1500-1519 Msa1453900:intron 45.0%
TGAGCGATGATGCAAAAGAG+AGG - tig0034931:1529-1548 Msa1453900:intron 45.0%
GAGCGATGATGCAAAAGAGA+GGG - tig0034931:1530-1549 Msa1453900:intron 45.0%
GATATAGAAAGGGAGGGGTA+AGG + tig0034931:1756-1775 Msa1453900:intergenic 45.0%
CAGAGCGATACTTGATTGAG+AGG + tig0034931:1787-1806 Msa1453900:intergenic 45.0%
! CGAGTTGGACATGTCTACAT+AGG - tig0034931:1958-1977 Msa1453900:CDS 45.0%
! GTCACTGTAATGGGGAAAGT+AGG - tig0034931:1980-1999 Msa1453900:CDS 45.0%
GATGAAAAAAGAGACGGGGT+TGG - tig0034931:2209-2228 Msa1453900:exon 45.0%
! AAGAGTGCAGTGAAAAAGCG+TGG + tig0034931:25-44 Msa1453900:intergenic 45.0%
GGAGGATTGGAAGTAGAACT+TGG + tig0034931:145-164 Msa1453900:intergenic 45.0%
TTCGTCTGCATTTGGAGGAT+TGG + tig0034931:158-177 Msa1453900:intergenic 45.0%
! TGGTTTTCGTCTGCATTTGG+AGG + tig0034931:163-182 Msa1453900:intergenic 45.0%
TTCTCTCTTCCTTGGCTTCA+AGG - tig0034931:308-327 Msa1453900:intron 45.0%
TACACGCCTAAGGTTCTGTT+TGG + tig0034931:833-852 Msa1453900:intergenic 45.0%
TATACGTTGGACTGAGAGTG+TGG - tig0034931:1411-1430 Msa1453900:intron 45.0%
! ATACGTTGGACTGAGAGTGT+GGG - tig0034931:1412-1431 Msa1453900:intron 45.0%
GGACAGCTGTTGTTAAAAGG+AGG - tig0034931:1500-1519 Msa1453900:intron 45.0%
TGAGCGATGATGCAAAAGAG+AGG - tig0034931:1529-1548 Msa1453900:intron 45.0%
GAGCGATGATGCAAAAGAGA+GGG - tig0034931:1530-1549 Msa1453900:intron 45.0%
GATATAGAAAGGGAGGGGTA+AGG + tig0034931:1756-1775 Msa1453900:intergenic 45.0%
CAGAGCGATACTTGATTGAG+AGG + tig0034931:1787-1806 Msa1453900:intergenic 45.0%
! CGAGTTGGACATGTCTACAT+AGG - tig0034931:1958-1977 Msa1453900:CDS 45.0%
! GTCACTGTAATGGGGAAAGT+AGG - tig0034931:1980-1999 Msa1453900:CDS 45.0%
GATGAAAAAAGAGACGGGGT+TGG - tig0034931:2209-2228 Msa1453900:exon 45.0%
ACAAACCCCCACCCCAATAA+AGG + tig0034931:1112-1131 Msa1453900:intergenic 50.0%
TTTATTGGGGTGGGGGTTTG+TGG - tig0034931:1111-1130 Msa1453900:intron 50.0%
GTGGGGGTTTGTGGTTTGAA+TGG - tig0034931:1120-1139 Msa1453900:intron 50.0%
! TGGGATTTTGCAGGGTGATC+CGG - tig0034931:1288-1307 Msa1453900:intron 50.0%
TGTGAACGATGTGGTGGCAA+CGG - tig0034931:1316-1335 Msa1453900:intron 50.0%
! TACGTTGGACTGAGAGTGTG+GGG - tig0034931:1413-1432 Msa1453900:intron 50.0%
!!! GTGAGTTTTGGACACCGAGT+TGG - tig0034931:1943-1962 Msa1453900:CDS 50.0%
ACAAACCCCCACCCCAATAA+AGG + tig0034931:1112-1131 Msa1453900:intergenic 50.0%
TTTATTGGGGTGGGGGTTTG+TGG - tig0034931:1111-1130 Msa1453900:intron 50.0%
GTGGGGGTTTGTGGTTTGAA+TGG - tig0034931:1120-1139 Msa1453900:intron 50.0%
! TGGGATTTTGCAGGGTGATC+CGG - tig0034931:1288-1307 Msa1453900:intron 50.0%
TGTGAACGATGTGGTGGCAA+CGG - tig0034931:1316-1335 Msa1453900:intron 50.0%
! TACGTTGGACTGAGAGTGTG+GGG - tig0034931:1413-1432 Msa1453900:intron 50.0%
!!! GTGAGTTTTGGACACCGAGT+TGG - tig0034931:1943-1962 Msa1453900:CDS 50.0%
CCACATCGTTCACAGGACAC+CGG + tig0034931:1310-1329 Msa1453900:intergenic 55.0%
GTGTCCTGTGAACGATGTGG+TGG - tig0034931:1310-1329 Msa1453900:intron 55.0%
GTTGCCACCACATCGTTCAC+AGG + tig0034931:1317-1336 Msa1453900:intergenic 55.0%
TCCATATGCCCTCGCGTAAG+AGG - tig0034931:1690-1709 Msa1453900:intron 55.0%
CCATATGCCCTCGCGTAAGA+GGG - tig0034931:1691-1710 Msa1453900:intron 55.0%
! TGAAGCACCCTCTTACGCGA+GGG + tig0034931:1701-1720 Msa1453900:intergenic 55.0%
! ATGAAGCACCCTCTTACGCG+AGG + tig0034931:1702-1721 Msa1453900:intergenic 55.0%
CCACATCGTTCACAGGACAC+CGG + tig0034931:1310-1329 Msa1453900:intergenic 55.0%
GTGTCCTGTGAACGATGTGG+TGG - tig0034931:1310-1329 Msa1453900:intron 55.0%
GTTGCCACCACATCGTTCAC+AGG + tig0034931:1317-1336 Msa1453900:intergenic 55.0%
TCCATATGCCCTCGCGTAAG+AGG - tig0034931:1690-1709 Msa1453900:intron 55.0%
CCATATGCCCTCGCGTAAGA+GGG - tig0034931:1691-1710 Msa1453900:intron 55.0%
! TGAAGCACCCTCTTACGCGA+GGG + tig0034931:1701-1720 Msa1453900:intergenic 55.0%
! ATGAAGCACCCTCTTACGCG+AGG + tig0034931:1702-1721 Msa1453900:intergenic 55.0%
CCGGTGTCCTGTGAACGATG+TGG - tig0034931:1307-1326 Msa1453900:intron 60.0%
! CCCTCTTACGCGAGGGCATA+TGG + tig0034931:1694-1713 Msa1453900:intergenic 60.0%
CCGGTGTCCTGTGAACGATG+TGG - tig0034931:1307-1326 Msa1453900:intron 60.0%
! CCCTCTTACGCGAGGGCATA+TGG + tig0034931:1694-1713 Msa1453900:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0034931 gene 1 2236 1 ID=Msa1453900;Name=Msa1453900
tig0034931 mRNA 1 2236 1 ID=Msa1453900-mRNA-1;Parent=Msa1453900;Name=Msa1453900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=17|0.5|0.66|1|0.5|0.33|3|0|178
tig0034931 exon 1 62 1 ID=Msa1453900-mRNA-1:exon:19379;Parent=Msa1453900-mRNA-1
tig0034931 exon 777 936 777 ID=Msa1453900-mRNA-1:exon:19378;Parent=Msa1453900-mRNA-1
tig0034931 exon 1908 2236 1908 ID=Msa1453900-mRNA-1:exon:19377;Parent=Msa1453900-mRNA-1
tig0034931 five_prime_UTR 2220 2236 2220 ID=Msa1453900-mRNA-1:five_prime_utr;Parent=Msa1453900-mRNA-1
tig0034931 CDS 1908 2219 1908 ID=Msa1453900-mRNA-1:cds;Parent=Msa1453900-mRNA-1
tig0034931 CDS 777 936 777 ID=Msa1453900-mRNA-1:cds;Parent=Msa1453900-mRNA-1
tig0034931 CDS 1 62 1 ID=Msa1453900-mRNA-1:cds;Parent=Msa1453900-mRNA-1
Gene Sequence

>Msa1453900

ATGGCCACGCTTTTTCACTGCACTCTTCATCCTCTATCTTCTTCTTCTTCAAGCTCCATTCATCTTTCTTCTTCTCCTTGTTCTTCTACATCTTCTCTTACACTTCCACAACCTTCTTCTTCATCCAAGTTCTACTTCCAATCCTCCAAATGCAGACGAAAACCAACAAAATCCAGATTCTTGATGATCATGGACCCCATTTTGCTGTTTAATGGCTTAGGTAGTAGTGCTTTCTATATTGATACACAAACACTTCTTGCTACTGTTAGTGTTTTGGCTGCCATTGCTCTTTCTCTCTTCCTTGGCTTCAAGGGTGATCCGGTGTCCTGTGAACGATGTGGTGGCAACGGTAATTATCTTTCTGCATTTCGACTTCAAGATTGTTGTGCTTTTTTGTTGGTTTATGGAAATTATGAATGCTTTATACGTTGGACTGAGAGTGTGGGGAACATTTTTAATATTACCAGTGAGGGTGGAACAAAATGTGTTTTTTGCAACAACGGCAAGATGAAAAAAGAGACGGGGTTGGTTGAC

Protein sequence

>Msa1453900

MATLFHCTLHPLSSSSSSSIHLSSSPCSSTSSLTLPQPSSSSKFYFQSSKCRRKPTKSRFLMIMDPILLFNGLGSSAFYIDTQTLLATVSVLAAIALSLFLGFKGDPVSCERCGGNGNYLSAFRLQDCCAFLLVYGNYECFIRWTESVGNIFNITSEGGTKCVFCNNGKMKKETGLVD