AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1358590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358590 MtrunA17_Chr3g0143581 96.407 167 6 0 1 167 1 167 1.58e-117 337
Msa1358590 MtrunA17_Chr3g0143571 94.375 160 9 0 172 331 15 174 5.25e-103 299
Msa1358590 MtrunA17_Chr1g0213311 45.260 327 139 8 20 321 24 335 3.68e-88 270
Msa1358590 MtrunA17_Chr7g0214501 38.554 249 109 5 83 329 3 209 3.13e-49 167
Msa1358590 MtrunA17_Chr3g0079841 37.500 304 116 7 20 317 29 264 3.43e-49 166
Msa1358590 MtrunA17_Chr7g0214491 59.016 61 25 0 20 80 25 85 7.39e-18 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358590 AT1G76110.1 63.312 308 105 5 18 322 25 327 7.88e-131 377
Msa1358590 AT1G04880.1 41.433 321 155 6 25 321 23 334 1.94e-78 247
Msa1358590 AT3G13350.1 40.476 294 152 4 25 317 34 305 2.52e-64 206
Msa1358590 AT1G55650.1 35.948 306 146 8 22 321 25 286 1.14e-53 179

Find 116 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGTTAGTTACATGAATT+TGG 0.209705 tig0016354:+31893 None:intergenic
CCAGGACTGACCAATCATTT+TGG 0.213880 tig0016354:+30468 None:intergenic
GCACTATAATTTACCATCTT+AGG 0.243959 tig0016354:+31310 None:intergenic
AGACGATGATTCATGTCTTT+TGG 0.244218 tig0016354:-30797 Msa1358590:CDS
TTAACGACCCTACTCTCTTT+TGG 0.246597 tig0016354:-31950 Msa1358590:CDS
GCTTAGAATTCTATTATAAT+TGG 0.250974 tig0016354:-30131 Msa1358590:three_prime_UTR
TCCACTGGTCTGAGGTTTAC+AGG 0.256822 tig0016354:-30072 Msa1358590:three_prime_UTR
TTATATAGTGTCAGTGAAAT+TGG 0.257424 tig0016354:-30740 Msa1358590:CDS
GTAAACTCCCTTTCTCTGTT+TGG 0.269610 tig0016354:+30490 None:intergenic
AAGTTATAGCCACTCCTATT+TGG 0.286925 tig0016354:+30553 None:intergenic
TTCAGAGCTGAGACTATTCC+AGG 0.293074 tig0016354:+30450 None:intergenic
GTAAAAGTACAAAGCAATTA+AGG 0.293418 tig0016354:+32277 None:intergenic
AGTTCACTTCTTCAAAGTTC+AGG 0.296129 tig0016354:-31515 Msa1358590:CDS
TAAACTCCCTTTCTCTGTTT+GGG 0.301975 tig0016354:+30491 None:intergenic
CCAACTATCCAAAGCCAAAT+AGG 0.317522 tig0016354:-30567 Msa1358590:CDS
TGCCAAAAGGGATAGATTTA+TGG 0.320764 tig0016354:+30165 None:intergenic
TATTGAACAATAGCTAATTC+AGG 0.323525 tig0016354:+31337 None:intergenic
TTTCATGTGGCAGATCCTTT+TGG 0.326269 tig0016354:-30003 Msa1358590:three_prime_UTR
GTCCATAAATCTATCCCTTT+TGG 0.330743 tig0016354:-30167 Msa1358590:exon
CTATTTGGCTTTGGATAGTT+GGG 0.336021 tig0016354:+30568 None:intergenic
CCTATTTGGCTTTGGATAGT+TGG 0.350904 tig0016354:+30567 None:intergenic
TAGAGTCTCTTTGCTTAAAC+AGG 0.362914 tig0016354:-29941 Msa1358590:three_prime_UTR
TTACCAAAACATTGGCTTAA+GGG 0.366684 tig0016354:-30265 Msa1358590:CDS
TTTACCAAAACATTGGCTTA+AGG 0.369159 tig0016354:-30266 Msa1358590:CDS
TAGCCACTCCTATTTGGCTT+TGG 0.371071 tig0016354:+30559 None:intergenic
TTGGGAAAAGGAACAATAGA+AGG 0.380812 tig0016354:-30778 Msa1358590:CDS
AGCGGTTTCTCCTTCATCAT+TGG 0.385924 tig0016354:-30677 Msa1358590:CDS
AGGTTGTTGCAGAGAAGAAA+TGG 0.399101 tig0016354:-31636 Msa1358590:CDS
GCATATATTGTTGTGGATAA+TGG 0.400222 tig0016354:-30095 Msa1358590:three_prime_UTR
TCCTACCCAAGCGATGAGTT+TGG 0.411390 tig0016354:+30617 None:intergenic
TGGTGCAAATTCCTAAGTTA+AGG 0.421658 tig0016354:+32415 None:intergenic
GAGAAGAAATGGAGAGAAGT+AGG 0.422027 tig0016354:-31625 Msa1358590:CDS
TGTCCCTTAAGCCAATGTTT+TGG 0.427681 tig0016354:+30262 None:intergenic
TGTTCAATATTCACCTAAGA+TGG 0.427917 tig0016354:-31323 Msa1358590:CDS
AGGGAGTTTACCAAAATGAT+TGG 0.428453 tig0016354:-30478 Msa1358590:CDS
CTCTTCTTCTGCTGCCAAAA+GGG 0.435265 tig0016354:+30153 None:intergenic
AACTCTACCCAAACAGAGAA+AGG 0.437948 tig0016354:-30498 Msa1358590:CDS
TATATAGTGTCAGTGAAATT+GGG 0.442454 tig0016354:-30739 Msa1358590:CDS
CCAAAATGATTGGTCAGTCC+TGG 0.444792 tig0016354:-30468 Msa1358590:CDS
TTGCATAGGATTCCTGTGAT+TGG 0.455163 tig0016354:-31794 Msa1358590:intron
GTTCACTTCTTCAAAGTTCA+GGG 0.455272 tig0016354:-31514 Msa1358590:CDS
CAATCACCAAACTCATCGCT+TGG 0.458935 tig0016354:-30623 Msa1358590:CDS
TGGGTTCAGAAGTTCTCAAA+GGG 0.460026 tig0016354:-30720 Msa1358590:CDS
TGGATGGGATGGCTTCACTA+TGG 0.463016 tig0016354:+32395 None:intergenic
GCTCTTCTTCTGCTGCCAAA+AGG 0.465124 tig0016354:+30152 None:intergenic
TCGTCGCTTTCACTTTCTCA+TGG 0.469995 tig0016354:-31919 Msa1358590:CDS
TTTGCCTTCGTCGTCGTCGC+CGG 0.479624 tig0016354:+32010 None:intergenic
AGAGCAGAGTTGTGGATGGA+TGG 0.490160 tig0016354:+32379 None:intergenic
TCTCAGCTCTGAAGAAAGAA+TGG 0.490573 tig0016354:-30440 Msa1358590:intron
AAGGTACAAAAGAGAGTTGA+CGG 0.495764 tig0016354:-30235 Msa1358590:CDS
CGATGAGTTTGGTGATTGAA+TGG 0.504304 tig0016354:+30628 None:intergenic
GATTCCTGTGATTGGTGGTA+AGG 0.506284 tig0016354:-31786 Msa1358590:CDS
TTGCAGATTTACCAAAACAT+TGG 0.511934 tig0016354:-30273 Msa1358590:intron
ATAGAAGGAAAATTTGATTG+TGG 0.518312 tig0016354:-30763 Msa1358590:CDS
CCACTGGTCTGAGGTTTACA+GGG 0.518711 tig0016354:-30071 Msa1358590:three_prime_UTR
AAACTCATCGCTTGGGTAGG+AGG 0.523054 tig0016354:-30615 Msa1358590:CDS
TTCTCTACGTGGAAGTTACA+AGG 0.523185 tig0016354:-31748 Msa1358590:CDS
TTGGCTTAAGGGACAAAGAA+AGG 0.525876 tig0016354:-30254 Msa1358590:CDS
AGAGTGTCCCAAAAGAGAGT+AGG 0.527303 tig0016354:+31942 None:intergenic
CAAGTGGGTACATACTAGAT+TGG 0.527598 tig0016354:+29971 None:intergenic
ATTTGCCGCGTGGGAGGGAA+CGG 0.528414 tig0016354:+32347 None:intergenic
GAGTGTCCCAAAAGAGAGTA+GGG 0.533581 tig0016354:+31943 None:intergenic
AAGTACAAAGCAATTAAGGA+TGG 0.535270 tig0016354:+32281 None:intergenic
TTTACATGCATATATTGTTG+TGG 0.536455 tig0016354:-30102 Msa1358590:three_prime_UTR
AATCACCAAACTCATCGCTT+GGG 0.544065 tig0016354:-30622 Msa1358590:CDS
GATTGGTTAAACAAACCAAA+AGG 0.548153 tig0016354:+29988 None:intergenic
CATAGGATTCCTGTGATTGG+TGG 0.550359 tig0016354:-31791 Msa1358590:intron
AGTGCTGAATCTCATGATGA+AGG 0.550456 tig0016354:-31292 Msa1358590:intron
CGAAATAGTAATACCTGGTG+AGG 0.553336 tig0016354:+31477 None:intergenic
TTGGTGATTGAATGGCTCAA+TGG 0.554617 tig0016354:+30636 None:intergenic
AAAAGAAGCGCTTGTAGTGG+TGG 0.559395 tig0016354:+31582 None:intergenic
AGATGATTTGCCGCGTGGGA+GGG 0.563653 tig0016354:+32342 None:intergenic
CAATCTAGTATGTACCCACT+TGG 0.563932 tig0016354:-29970 Msa1358590:three_prime_UTR
AAGATGATTTGCCGCGTGGG+AGG 0.565052 tig0016354:+32341 None:intergenic
GAAATAGTAATACCTGGTGA+GGG 0.568622 tig0016354:+31478 None:intergenic
ACTCTACCCAAACAGAGAAA+GGG 0.569820 tig0016354:-30497 Msa1358590:CDS
TGTTGTGGATAATGGTCCAC+TGG 0.570827 tig0016354:-30087 Msa1358590:three_prime_UTR
TACACAGCAGAGCAGAGTTG+TGG 0.575097 tig0016354:+32371 None:intergenic
CGTCTTTGTGAGAGGCGAGT+TGG 0.576047 tig0016354:+31976 None:intergenic
TTAATGTGTGTTTGATTGTG+AGG 0.580951 tig0016354:-29853 Msa1358590:three_prime_UTR
TTGTGAGAGGCGAGTTGGTG+AGG 0.581509 tig0016354:+31981 None:intergenic
ATGTGGCATTTAGTTTCATG+TGG 0.582340 tig0016354:-30016 Msa1358590:three_prime_UTR
TTGGGTTCAGAAGTTCTCAA+AGG 0.586901 tig0016354:-30721 Msa1358590:CDS
GGAGTACAAACAGAAAATGA+AGG 0.592924 tig0016354:-30214 Msa1358590:CDS
GTTAACGACGTCTTTGTGAG+AGG 0.594624 tig0016354:+31968 None:intergenic
AGTACAAAGCAATTAAGGAT+GGG 0.596058 tig0016354:+32282 None:intergenic
GCTAATTCAGGTTTCCACGA+TGG 0.602804 tig0016354:+31349 None:intergenic
AAGGAGAAGCGGTTATGAGA+AGG 0.604277 tig0016354:-31729 Msa1358590:intron
AGCTCCTTACCACCAATCAC+AGG 0.612482 tig0016354:+31782 None:intergenic
CAGCAGAGCAGAGTTGTGGA+TGG 0.612672 tig0016354:+32375 None:intergenic
AAGAAGATGATTTGCCGCGT+GGG 0.614673 tig0016354:+32338 None:intergenic
CCCTGTAAACCTCAGACCAG+TGG 0.615472 tig0016354:+30071 None:intergenic
GAGACTCTATGTGGACCAAG+TGG 0.616663 tig0016354:+29955 None:intergenic
GAGCAGAGTTGTGGATGGAT+GGG 0.618143 tig0016354:+32380 None:intergenic
AGAGTTGTGGATGGATGGGA+TGG 0.623660 tig0016354:+32384 None:intergenic
TTGTGCAGACAGAAGAACTC+GGG 0.623939 tig0016354:-30191 Msa1358590:CDS
TACAAAAGAAGCGCTTGTAG+TGG 0.625201 tig0016354:+31579 None:intergenic
TGTTGTGTAACCAATGATGA+AGG 0.625666 tig0016354:+30667 None:intergenic
GATAATGGTCCACTGGTCTG+AGG 0.629424 tig0016354:-30080 Msa1358590:three_prime_UTR
ATAAAAGATATAGTTTCATG+TGG 0.634865 tig0016354:-30033 Msa1358590:three_prime_UTR
AACTCCGGCGACGACGACGA+AGG 0.636321 tig0016354:-32014 Msa1358590:CDS
TATCCAAAGCCAAATAGGAG+TGG 0.645627 tig0016354:-30562 Msa1358590:CDS
AAAGAAGATGATTTGCCGCG+TGG 0.646388 tig0016354:+32337 None:intergenic
TTAAGCAAAGAGACTCTATG+TGG 0.649143 tig0016354:+29946 None:intergenic
TGATTTGCACGTTCTCTACG+TGG 0.652993 tig0016354:-31759 Msa1358590:CDS
AAATAGTAATACCTGGTGAG+GGG 0.654247 tig0016354:+31479 None:intergenic
GCGGTGAGAAGCAAGAACTC+CGG 0.655187 tig0016354:-32029 Msa1358590:CDS
ACCAAACTCATCGCTTGGGT+AGG 0.660160 tig0016354:-30618 Msa1358590:CDS
GTGGAAGTTACAAGGAGAAG+CGG 0.661449 tig0016354:-31740 Msa1358590:CDS
AATAGTAATACCTGGTGAGG+GGG 0.665808 tig0016354:+31480 None:intergenic
GTTGTGCAGACAGAAGAACT+CGG 0.678933 tig0016354:-30192 Msa1358590:CDS
AGACTCTATGTGGACCAAGT+GGG 0.694427 tig0016354:+29956 None:intergenic
TTTCTGGTAACAGTCCATCG+TGG 0.712333 tig0016354:-31363 Msa1358590:CDS
GGGTTCAGAAGTTCTCAAAG+GGG 0.716935 tig0016354:-30719 Msa1358590:CDS
TCATTGGTTACACAACACAA+CGG 0.736779 tig0016354:-30661 Msa1358590:CDS
TGTAACCGTTCCCTCCCACG+CGG 0.737322 tig0016354:-32352 Msa1358590:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAGAATAGTAAAAAAA+AGG + tig0016354:30056-30075 None:intergenic 10.0%
!! TATTTAATAATTCAAATTTC+AGG - tig0016354:30593-30612 Msa1358590:CDS 10.0%
!! TTATAAAAATTCATTTAGTT+CGG + tig0016354:32375-32394 None:intergenic 10.0%
!! AAATGAAATCACATTTATAA+TGG + tig0016354:30436-30455 None:intergenic 15.0%
!!! ATGAAACTATATCTTTTATA+AGG + tig0016354:32215-32234 None:intergenic 15.0%
!!! TATAAAAATTCATTTAGTTC+GGG + tig0016354:32374-32393 None:intergenic 15.0%
!! GAGAAAATGAAAATGAAATT+AGG + tig0016354:30006-30025 None:intergenic 20.0%
!! ACTATTAAAAATGTCATCAT+CGG - tig0016354:30198-30217 Msa1358590:CDS 20.0%
!! TTGAAAAAGTAAATGAAGAA+AGG + tig0016354:30389-30408 None:intergenic 20.0%
!! CAGTTTAATCTTATAATGAA+GGG + tig0016354:30556-30575 None:intergenic 20.0%
!! ACAGTTTAATCTTATAATGA+AGG + tig0016354:30557-30576 None:intergenic 20.0%
!! TAATGGTTATTTATCAAGTT+AGG - tig0016354:30985-31004 Msa1358590:intron 20.0%
!! AGATATTGAAATTACAGAAT+TGG - tig0016354:31042-31061 Msa1358590:intron 20.0%
!! AAGAAAGAATGGTAATTAAA+AGG - tig0016354:31820-31839 Msa1358590:intron 20.0%
!! AGAAAGAATGGTAATTAAAA+GGG - tig0016354:31821-31840 Msa1358590:intron 20.0%
!! GCTTAGAATTCTATTATAAT+TGG - tig0016354:32118-32137 Msa1358590:intron 20.0%
!! ATAAAAGATATAGTTTCATG+TGG - tig0016354:32216-32235 Msa1358590:intron 20.0%
!! GTAAAAGTACAAAGCAATTA+AGG + tig0016354:29975-29994 None:intergenic 25.0%
!! TTTTCATTTTCTCTCATCTT+AGG - tig0016354:30013-30032 Msa1358590:three_prime_UTR 25.0%
! AGCAGAATAAAAGATAGAAA+AGG + tig0016354:30103-30122 None:intergenic 25.0%
!!! AATAAATTTTCAAGCAGTTC+CGG - tig0016354:30167-30186 Msa1358590:exon 25.0%
! ACTAGTTAGTTACATGAATT+TGG + tig0016354:30359-30378 None:intergenic 25.0%
!!! TTATAATGGTACTTTTGGTT+TGG + tig0016354:30422-30441 None:intergenic 25.0%
!! CACATTTATAATGGTACTTT+TGG + tig0016354:30427-30446 None:intergenic 25.0%
!! AATGTGATTTCATTTTGCAT+AGG - tig0016354:30441-30460 Msa1358590:CDS 25.0%
! TATTGAACAATAGCTAATTC+AGG + tig0016354:30915-30934 None:intergenic 25.0%
! TCATGATGAAGGTAATTTAA+TGG - tig0016354:30968-30987 Msa1358590:intron 25.0%
! GAAAGTAGTTTATGATGTTA+AGG - tig0016354:31236-31255 Msa1358590:intron 25.0%
!!! TCTGCATATTTAATTTGTCA+TGG - tig0016354:31379-31398 Msa1358590:intron 25.0%
! ATAGAAGGAAAATTTGATTG+TGG - tig0016354:31486-31505 Msa1358590:intron 25.0%
! TTATATAGTGTCAGTGAAAT+TGG - tig0016354:31509-31528 Msa1358590:CDS 25.0%
! TATATAGTGTCAGTGAAATT+GGG - tig0016354:31510-31529 Msa1358590:CDS 25.0%
!!! ATTGTTGTTTATCTAGAATC+TGG - tig0016354:31887-31906 Msa1358590:intron 25.0%
! TTGGTAAATCTGCAATATTA+GGG + tig0016354:31971-31990 None:intergenic 25.0%
! TTTGGTAAATCTGCAATATT+AGG + tig0016354:31972-31991 None:intergenic 25.0%
! TTTACATGCATATATTGTTG+TGG - tig0016354:32147-32166 Msa1358590:intron 25.0%
AGTACAAAGCAATTAAGGAT+GGG + tig0016354:29970-29989 None:intergenic 30.0%
AAGTACAAAGCAATTAAGGA+TGG + tig0016354:29971-29990 None:intergenic 30.0%
TTTCTCTCATCTTAGGAATT+AGG - tig0016354:30020-30039 Msa1358590:three_prime_UTR 30.0%
ATTAAAAATGTCATCATCGG+CGG - tig0016354:30201-30220 Msa1358590:CDS 30.0%
AATAGCGAAATAGTAATACC+TGG + tig0016354:30780-30799 None:intergenic 30.0%
! TATATTGCAGATGCATTTTC+TGG - tig0016354:30870-30889 Msa1358590:intron 30.0%
TGTTCAATATTCACCTAAGA+TGG - tig0016354:30926-30945 Msa1358590:intron 30.0%
GCACTATAATTTACCATCTT+AGG + tig0016354:30942-30961 None:intergenic 30.0%
GAAATTACAGAATTGGAATC+AGG - tig0016354:31049-31068 Msa1358590:intron 30.0%
ACTCATTTGTGATTCTACTA+AGG - tig0016354:31166-31185 Msa1358590:intron 30.0%
GAAGAGAAGAAAAAGAAAGT+GGG - tig0016354:31656-31675 Msa1358590:intron 30.0%
!!! GTGTGTTGTTTTATCCTAAT+TGG - tig0016354:31857-31876 Msa1358590:intron 30.0%
CAACAATGTAAAGACCAATT+AGG + tig0016354:31874-31893 None:intergenic 30.0%
! TTATCTAGAATCTGGTTATC+AGG - tig0016354:31895-31914 Msa1358590:intron 30.0%
! TATCTAGAATCTGGTTATCA+GGG - tig0016354:31896-31915 Msa1358590:intron 30.0%
TTGCAGATTTACCAAAACAT+TGG - tig0016354:31976-31995 Msa1358590:CDS 30.0%
!! TTTACCAAAACATTGGCTTA+AGG - tig0016354:31983-32002 Msa1358590:CDS 30.0%
!! TTACCAAAACATTGGCTTAA+GGG - tig0016354:31984-32003 Msa1358590:CDS 30.0%
GCATATATTGTTGTGGATAA+TGG - tig0016354:32154-32173 Msa1358590:intron 30.0%
! GATTGGTTAAACAAACCAAA+AGG + tig0016354:32264-32283 None:intergenic 30.0%
TTAATGTGTGTTTGATTGTG+AGG - tig0016354:32396-32415 Msa1358590:five_prime_UTR 30.0%
AGGTAGTACTAGTAAATGAG+AGG + tig0016354:30083-30102 None:intergenic 35.0%
!! GCTATTTTCTCAAACCACAA+CGG - tig0016354:30120-30139 Msa1358590:three_prime_UTR 35.0%
!! GAAGAATGTTTTTACCGTTG+TGG + tig0016354:30137-30156 None:intergenic 35.0%
! TTTTTAATAGTTCACGTCGC+CGG + tig0016354:30189-30208 None:intergenic 35.0%
AGTTCACTTCTTCAAAGTTC+AGG - tig0016354:30734-30753 Msa1358590:CDS 35.0%
GTTCACTTCTTCAAAGTTCA+GGG - tig0016354:30735-30754 Msa1358590:CDS 35.0%
AAATAGTAATACCTGGTGAG+GGG + tig0016354:30773-30792 None:intergenic 35.0%
GAAATAGTAATACCTGGTGA+GGG + tig0016354:30774-30793 None:intergenic 35.0%
TGCTGCTAAGAATTGAAAGT+TGG - tig0016354:31205-31224 Msa1358590:intron 35.0%
! TAGAAGTAGAAGCATGATTG+TGG - tig0016354:31296-31315 Msa1358590:CDS 35.0%
! AGACGATGATTCATGTCTTT+TGG - tig0016354:31452-31471 Msa1358590:intron 35.0%
! GACGATGATTCATGTCTTTT+GGG - tig0016354:31453-31472 Msa1358590:intron 35.0%
!! GATTCATGTCTTTTGGGAAA+AGG - tig0016354:31459-31478 Msa1358590:intron 35.0%
TTGGGAAAAGGAACAATAGA+AGG - tig0016354:31471-31490 Msa1358590:intron 35.0%
TGTTGTGTAACCAATGATGA+AGG + tig0016354:31585-31604 None:intergenic 35.0%
! TCATTGGTTACACAACACAA+CGG - tig0016354:31588-31607 Msa1358590:CDS 35.0%
GGAAGAGAAGAAAAAGAAAG+TGG - tig0016354:31655-31674 Msa1358590:intron 35.0%
!! CTATTTGGCTTTGGATAGTT+GGG + tig0016354:31684-31703 None:intergenic 35.0%
AAGTTATAGCCACTCCTATT+TGG + tig0016354:31699-31718 None:intergenic 35.0%
TAAACTCCCTTTCTCTGTTT+GGG + tig0016354:31761-31780 None:intergenic 35.0%
AGGGAGTTTACCAAAATGAT+TGG - tig0016354:31771-31790 Msa1358590:CDS 35.0%
AAGGTACAAAAGAGAGTTGA+CGG - tig0016354:32014-32033 Msa1358590:CDS 35.0%
GGAGTACAAACAGAAAATGA+AGG - tig0016354:32035-32054 Msa1358590:CDS 35.0%
! GTCCATAAATCTATCCCTTT+TGG - tig0016354:32082-32101 Msa1358590:intron 35.0%
TGCCAAAAGGGATAGATTTA+TGG + tig0016354:32087-32106 None:intergenic 35.0%
! ATGTGGCATTTAGTTTCATG+TGG - tig0016354:32233-32252 Msa1358590:intron 35.0%
TTAAGCAAAGAGACTCTATG+TGG + tig0016354:32306-32325 None:intergenic 35.0%
TAGAGTCTCTTTGCTTAAAC+AGG - tig0016354:32308-32327 Msa1358590:five_prime_UTR 35.0%
! TTAACGACCCTACTCTCTTT+TGG - tig0016354:30299-30318 Msa1358590:intron 40.0%
! TAACGACCCTACTCTCTTTT+GGG - tig0016354:30300-30319 Msa1358590:intron 40.0%
TTGCATAGGATTCCTGTGAT+TGG - tig0016354:30455-30474 Msa1358590:CDS 40.0%
TTCTCTACGTGGAAGTTACA+AGG - tig0016354:30501-30520 Msa1358590:CDS 40.0%
AGGTTGTTGCAGAGAAGAAA+TGG - tig0016354:30613-30632 Msa1358590:CDS 40.0%
GAGAAGAAATGGAGAGAAGT+AGG - tig0016354:30624-30643 Msa1358590:CDS 40.0%
!! TACAAAAGAAGCGCTTGTAG+TGG + tig0016354:30673-30692 None:intergenic 40.0%
AATAGTAATACCTGGTGAGG+GGG + tig0016354:30772-30791 None:intergenic 40.0%
CGAAATAGTAATACCTGGTG+AGG + tig0016354:30775-30794 None:intergenic 40.0%
! AGTGCTGAATCTCATGATGA+AGG - tig0016354:30957-30976 Msa1358590:intron 40.0%
! ATGATTGTGGACTCAAGTTG+AGG - tig0016354:31309-31328 Msa1358590:CDS 40.0%
!! TGGACTCAAGTTGAGGATTT+AGG - tig0016354:31316-31335 Msa1358590:CDS 40.0%
TTGGGTTCAGAAGTTCTCAA+AGG - tig0016354:31528-31547 Msa1358590:CDS 40.0%
TGGGTTCAGAAGTTCTCAAA+GGG - tig0016354:31529-31548 Msa1358590:CDS 40.0%
GCTTTACCATCCAGAAAAAG+CGG - tig0016354:31554-31573 Msa1358590:CDS 40.0%
! TTGGTGATTGAATGGCTCAA+TGG + tig0016354:31616-31635 None:intergenic 40.0%
! CGATGAGTTTGGTGATTGAA+TGG + tig0016354:31624-31643 None:intergenic 40.0%
AATCACCAAACTCATCGCTT+GGG - tig0016354:31627-31646 Msa1358590:CDS 40.0%
!! CCTATTTGGCTTTGGATAGT+TGG + tig0016354:31685-31704 None:intergenic 40.0%
CCAACTATCCAAAGCCAAAT+AGG - tig0016354:31682-31701 Msa1358590:intron 40.0%
TATCCAAAGCCAAATAGGAG+TGG - tig0016354:31687-31706 Msa1358590:intron 40.0%
AACTCTACCCAAACAGAGAA+AGG - tig0016354:31751-31770 Msa1358590:CDS 40.0%
ACTCTACCCAAACAGAGAAA+GGG - tig0016354:31752-31771 Msa1358590:CDS 40.0%
GTAAACTCCCTTTCTCTGTT+TGG + tig0016354:31762-31781 None:intergenic 40.0%
!! TCTCAGCTCTGAAGAAAGAA+TGG - tig0016354:31809-31828 Msa1358590:intron 40.0%
! TGTCCCTTAAGCCAATGTTT+TGG + tig0016354:31990-32009 None:intergenic 40.0%
TTGGCTTAAGGGACAAAGAA+AGG - tig0016354:31995-32014 Msa1358590:CDS 40.0%
! TTTCATGTGGCAGATCCTTT+TGG - tig0016354:32246-32265 Msa1358590:intron 40.0%
CAAGTGGGTACATACTAGAT+TGG + tig0016354:32281-32300 None:intergenic 40.0%
CAATCTAGTATGTACCCACT+TGG - tig0016354:32279-32298 Msa1358590:intron 40.0%
! AAGAAGATGATTTGCCGCGT+GGG + tig0016354:29914-29933 None:intergenic 45.0%
! AAAGAAGATGATTTGCCGCG+TGG + tig0016354:29915-29934 None:intergenic 45.0%
GTTAACGACGTCTTTGTGAG+AGG + tig0016354:30284-30303 None:intergenic 45.0%
GAGTGTCCCAAAAGAGAGTA+GGG + tig0016354:30309-30328 None:intergenic 45.0%
! AGAGTGTCCCAAAAGAGAGT+AGG + tig0016354:30310-30329 None:intergenic 45.0%
! TCGTCGCTTTCACTTTCTCA+TGG - tig0016354:30330-30349 Msa1358590:intron 45.0%
CATAGGATTCCTGTGATTGG+TGG - tig0016354:30458-30477 Msa1358590:CDS 45.0%
! GATTCCTGTGATTGGTGGTA+AGG - tig0016354:30463-30482 Msa1358590:CDS 45.0%
! TGATTTGCACGTTCTCTACG+TGG - tig0016354:30490-30509 Msa1358590:CDS 45.0%
GTGGAAGTTACAAGGAGAAG+CGG - tig0016354:30509-30528 Msa1358590:CDS 45.0%
AAGGAGAAGCGGTTATGAGA+AGG - tig0016354:30520-30539 Msa1358590:CDS 45.0%
!! AAAAGAAGCGCTTGTAGTGG+TGG + tig0016354:30670-30689 None:intergenic 45.0%
! TTTCTGGTAACAGTCCATCG+TGG - tig0016354:30886-30905 Msa1358590:intron 45.0%
! GCTAATTCAGGTTTCCACGA+TGG + tig0016354:30903-30922 None:intergenic 45.0%
GGGTTCAGAAGTTCTCAAAG+GGG - tig0016354:31530-31549 Msa1358590:CDS 45.0%
!!! GAGAAACCGCTTTTTCTGGA+TGG + tig0016354:31563-31582 None:intergenic 45.0%
!!! GAAGGAGAAACCGCTTTTTC+TGG + tig0016354:31567-31586 None:intergenic 45.0%
AGCGGTTTCTCCTTCATCAT+TGG - tig0016354:31572-31591 Msa1358590:CDS 45.0%
CAATCACCAAACTCATCGCT+TGG - tig0016354:31626-31645 Msa1358590:CDS 45.0%
! TAGCCACTCCTATTTGGCTT+TGG + tig0016354:31693-31712 None:intergenic 45.0%
! CCAGGACTGACCAATCATTT+TGG + tig0016354:31784-31803 None:intergenic 45.0%
! CCAAAATGATTGGTCAGTCC+TGG - tig0016354:31781-31800 Msa1358590:CDS 45.0%
TTCAGAGCTGAGACTATTCC+AGG + tig0016354:31802-31821 None:intergenic 45.0%
GTTGTGCAGACAGAAGAACT+CGG - tig0016354:32057-32076 Msa1358590:exon 45.0%
TTGTGCAGACAGAAGAACTC+GGG - tig0016354:32058-32077 Msa1358590:exon 45.0%
CTCTTCTTCTGCTGCCAAAA+GGG + tig0016354:32099-32118 None:intergenic 45.0%
! TGTTGTGGATAATGGTCCAC+TGG - tig0016354:32162-32181 Msa1358590:intron 45.0%
AGACTCTATGTGGACCAAGT+GGG + tig0016354:32296-32315 None:intergenic 45.0%
!! AAATAATTGAATTTAAATTA+AGG - tig0016354:31013-31032 Msa1358590:intron 5.0%
!! AATAATTGAATTTAAATTAA+GGG - tig0016354:31014-31033 Msa1358590:intron 5.0%
TGGATGGGATGGCTTCACTA+TGG + tig0016354:29857-29876 None:intergenic 50.0%
AGAGTTGTGGATGGATGGGA+TGG + tig0016354:29868-29887 None:intergenic 50.0%
GAGCAGAGTTGTGGATGGAT+GGG + tig0016354:29872-29891 None:intergenic 50.0%
AGAGCAGAGTTGTGGATGGA+TGG + tig0016354:29873-29892 None:intergenic 50.0%
TACACAGCAGAGCAGAGTTG+TGG + tig0016354:29881-29900 None:intergenic 50.0%
AGCTCCTTACCACCAATCAC+AGG + tig0016354:30470-30489 None:intergenic 50.0%
ACCAAACTCATCGCTTGGGT+AGG - tig0016354:31631-31650 Msa1358590:CDS 50.0%
TCCTACCCAAGCGATGAGTT+TGG + tig0016354:31635-31654 None:intergenic 50.0%
AAACTCATCGCTTGGGTAGG+AGG - tig0016354:31634-31653 Msa1358590:CDS 50.0%
GCTCTTCTTCTGCTGCCAAA+AGG + tig0016354:32100-32119 None:intergenic 50.0%
! GATAATGGTCCACTGGTCTG+AGG - tig0016354:32169-32188 Msa1358590:intron 50.0%
! TCCACTGGTCTGAGGTTTAC+AGG - tig0016354:32177-32196 Msa1358590:intron 50.0%
! CCACTGGTCTGAGGTTTACA+GGG - tig0016354:32178-32197 Msa1358590:intron 50.0%
GAGACTCTATGTGGACCAAG+TGG + tig0016354:32297-32316 None:intergenic 50.0%
CAGCAGAGCAGAGTTGTGGA+TGG + tig0016354:29877-29896 None:intergenic 55.0%
! AGATGATTTGCCGCGTGGGA+GGG + tig0016354:29910-29929 None:intergenic 55.0%
! AAGATGATTTGCCGCGTGGG+AGG + tig0016354:29911-29930 None:intergenic 55.0%
GCGGTGAGAAGCAAGAACTC+CGG - tig0016354:30220-30239 Msa1358590:CDS 55.0%
!! TTGTGAGAGGCGAGTTGGTG+AGG + tig0016354:30271-30290 None:intergenic 55.0%
CGTCTTTGTGAGAGGCGAGT+TGG + tig0016354:30276-30295 None:intergenic 55.0%
! CCTGGTGAGGGGGTGTAAAT+AGG + tig0016354:30762-30781 None:intergenic 55.0%
CCTATTTACACCCCCTCACC+AGG - tig0016354:30759-30778 Msa1358590:CDS 55.0%
CCCTGTAAACCTCAGACCAG+TGG + tig0016354:32181-32200 None:intergenic 55.0%
TGTAACCGTTCCCTCCCACG+CGG - tig0016354:29897-29916 Msa1358590:three_prime_UTR 60.0%
ATTTGCCGCGTGGGAGGGAA+CGG + tig0016354:29905-29924 None:intergenic 60.0%
TTTGCCTTCGTCGTCGTCGC+CGG + tig0016354:30242-30261 None:intergenic 60.0%
AACTCCGGCGACGACGACGA+AGG - tig0016354:30235-30254 Msa1358590:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0016354 gene 29837 32434 29837 ID=Msa1358590;Name=Msa1358590
tig0016354 mRNA 29837 32434 29837 ID=Msa1358590-mRNA-1;Parent=Msa1358590;Name=Msa1358590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=172|1|1|1|0.83|0.71|7|345|331
tig0016354 exon 29837 30289 29837 ID=Msa1358590-mRNA-1:exon:10924;Parent=Msa1358590-mRNA-1
tig0016354 exon 30441 30826 30441 ID=Msa1358590-mRNA-1:exon:10923;Parent=Msa1358590-mRNA-1
tig0016354 exon 31293 31391 31293 ID=Msa1358590-mRNA-1:exon:10922;Parent=Msa1358590-mRNA-1
tig0016354 exon 31491 31656 31491 ID=Msa1358590-mRNA-1:exon:10921;Parent=Msa1358590-mRNA-1
tig0016354 exon 31730 31808 31730 ID=Msa1358590-mRNA-1:exon:10920;Parent=Msa1358590-mRNA-1
tig0016354 exon 31906 32087 31906 ID=Msa1358590-mRNA-1:exon:10919;Parent=Msa1358590-mRNA-1
tig0016354 exon 32287 32434 32287 ID=Msa1358590-mRNA-1:exon:10918;Parent=Msa1358590-mRNA-1
tig0016354 five_prime_UTR 32287 32434 32287 ID=Msa1358590-mRNA-1:five_prime_utr;Parent=Msa1358590-mRNA-1
tig0016354 five_prime_UTR 32064 32087 32064 ID=Msa1358590-mRNA-1:five_prime_utr;Parent=Msa1358590-mRNA-1
tig0016354 CDS 31906 32063 31906 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 CDS 31730 31808 31730 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 CDS 31491 31656 31491 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 CDS 31293 31391 31293 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 CDS 30441 30826 30441 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 CDS 30182 30289 30182 ID=Msa1358590-mRNA-1:cds;Parent=Msa1358590-mRNA-1
tig0016354 three_prime_UTR 29837 30181 29837 ID=Msa1358590-mRNA-1:three_prime_utr;Parent=Msa1358590-mRNA-1
Gene Sequence

>Msa1358590

ATGTCATCATCGGCGGTGAGAAGCAAGAACTCCGGCGACGACGACGAAGGCAAACACTATCCTCACCAACTCGCCTCTCACAAAGACGTCGTTAACGACCCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCTACCAAATTCATGATTCCTGTGATTGGTGGTAAGGAGCTTGATTTGCACGTTCTCTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCCACCACTACAAGCGCTTCTTTTGTACTAAGAAAACACTATTTGAATCTTCTTTATCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATTTACACCCCCTCACCAGATGCATTTTCTGGTAACAGTCCATCGTGGAAACCTGAATTAGCTATTGTTCAATATTCACCTAAGATGGTAAATTATAGTGCTGAATCTCATGATGAAGTTCATGTAGACGATGATTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTGAAATTGGGTTCAGAAGTTCTCAAAGGGGTGCTTTACCATCCAGAAAAAGCGGTTTCTCCTTCATCATTGGTTACACAACACAACGGTGCCATTGAGCCATTCAATCACCAAACTCATCGCTTGGGTAGGAGGAAGAGAAGAAAAAGAAAGTGGGATCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGTCAGTCCTGGAATAGTCTCAGCTCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAGTTGACGGAGTACAAACAGAAAATGAAGGTTGTGCAGACAGAAGAACTCGGGCGTCCATAA

Protein sequence

>Msa1358590

MSSSAVRSKNSGDDDEGKHYPHQLASHKDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIYTPSPDAFSGNSPSWKPELAIVQYSPKMVNYSAESHDEVHVDDDSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEKAVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSSEERMIYQNIGLRDKERYKRELTEYKQKMKVVQTEELGRP*