AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526990 MtrunA17_Chr7g0270841 97.112 277 7 1 1 276 1 277 0.0 557
Msa0526990 MtrunA17_Chr3g0145981 54.959 242 108 1 35 276 91 331 9.97e-99 293
Msa0526990 MtrunA17_Chr8g0370851 54.132 242 109 1 35 276 80 319 1.74e-95 283
Msa0526990 MtrunA17_Chr8g0370821 50.826 242 117 1 35 276 91 330 7.06e-90 270
Msa0526990 MtrunA17_Chr8g0370831 50.826 242 104 1 35 276 82 308 1.37e-86 260
Msa0526990 MtrunA17_Chr7g0221751 38.735 253 146 4 33 276 58 310 3.90e-53 175
Msa0526990 MtrunA17_Chr2g0294721 38.889 252 144 6 35 276 56 307 3.14e-52 173
Msa0526990 MtrunA17_Chr2g0329791 38.397 237 110 6 35 270 81 282 3.64e-52 171
Msa0526990 MtrunA17_Chr1g0206111 38.034 234 141 3 33 262 61 294 3.99e-50 167
Msa0526990 MtrunA17_Chr2g0329781 36.134 238 119 5 33 270 59 263 3.08e-48 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526990 AT4G01700.1 69.549 266 81 0 11 276 14 279 5.60e-146 410
Msa0526990 AT1G02360.1 72.314 242 67 0 35 276 30 271 6.79e-140 395
Msa0526990 AT1G02360.3 67.279 272 77 2 9 276 60 323 7.16e-140 397
Msa0526990 AT1G02360.2 67.279 272 77 2 9 276 54 317 8.34e-140 396
Msa0526990 AT3G12500.1 58.264 242 100 1 35 276 86 326 2.17e-106 312
Msa0526990 AT3G16920.1 39.286 252 143 7 35 276 68 319 4.17e-52 173
Msa0526990 AT3G16920.2 39.286 252 143 7 35 276 92 343 6.84e-52 173
Msa0526990 AT1G05850.1 37.450 251 148 5 35 276 60 310 2.02e-51 171
Msa0526990 AT1G05850.2 37.450 251 148 5 35 276 60 310 2.02e-51 171
Msa0526990 AT3G54420.1 36.820 239 115 5 33 270 70 273 3.47e-49 164
Msa0526990 AT2G43590.1 37.131 237 108 7 35 270 68 264 1.15e-48 162
Msa0526990 AT2G43610.1 37.500 240 108 7 31 270 84 281 2.64e-42 146
Msa0526990 AT2G43580.1 34.599 237 114 7 35 270 69 265 8.95e-42 144
Msa0526990 AT2G43570.1 34.413 247 117 6 29 270 71 277 5.25e-41 143
Msa0526990 AT2G43620.1 35.833 240 112 7 31 270 86 283 1.99e-40 142
Msa0526990 AT1G56680.1 34.156 243 115 9 31 270 80 280 2.07e-30 115
Msa0526990 AT1G56680.2 34.156 243 115 9 31 270 103 303 5.02e-30 115
Msa0526990 AT2G43600.1 34.440 241 114 10 31 270 76 273 2.87e-28 109
Msa0526990 AT2G43600.2 34.440 241 114 10 31 270 97 294 4.45e-28 109
Msa0526990 AT3G47540.1 28.992 238 114 9 35 270 30 214 1.01e-26 103
Msa0526990 AT3G47540.2 28.139 231 111 9 35 263 30 207 1.07e-22 95.1

Find 67 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGATACTGGACCTAATT+TGG 0.146711 3_4:-81143600 Msa0526990:CDS
CTTTCCTCCTCTGCATCTTT+AGG 0.179427 3_4:-81144988 Msa0526990:CDS
AGAGAAGAGATTGGTATAAT+AGG 0.189791 3_4:+81144943 None:intergenic
ACCAAATTGAGGAAAATATT+TGG 0.190558 3_4:+81144822 None:intergenic
AGCAATAAAGCAAAATAATA+TGG 0.234582 3_4:+81145011 None:intergenic
TTAGGAGTTGAATCATTTAT+TGG 0.247252 3_4:-81144970 Msa0526990:CDS
TGTGATGGTTGGAAAATATT+TGG 0.256663 3_4:-81143771 Msa0526990:CDS
TCAAAACTGCTCTATGGTTT+TGG 0.260706 3_4:-81143829 Msa0526990:CDS
GCTAATCGCACAGCTGGTTT+TGG 0.280719 3_4:-81143728 Msa0526990:CDS
TGATATGCACAATCCAAATT+AGG 0.305058 3_4:+81143587 None:intergenic
TTGTGTAGGAATTATAACTA+TGG 0.344973 3_4:-81143926 Msa0526990:intron
TAGGAGTTGAATCATTTATT+GGG 0.345727 3_4:-81144969 Msa0526990:CDS
AAAGATTGGCCTTGCTTTGA+AGG 0.347412 3_4:-81144631 Msa0526990:CDS
GAGAAGAGATTGGTATAATA+GGG 0.356153 3_4:+81144944 None:intergenic
TTGCTTTCAAAACTGCTCTA+TGG 0.359827 3_4:-81143835 Msa0526990:CDS
AAGCATAAGCCCCAAGAAAA+TGG 0.365932 3_4:+81144700 None:intergenic
GCAAGAGTTAATGATCGAAT+TGG 0.385700 3_4:-81143653 Msa0526990:CDS
AAGTTGTTCAATGTGGATAC+TGG 0.403395 3_4:-81143611 Msa0526990:CDS
AAAACACAAAACATATATAA+AGG 0.406924 3_4:+81143525 None:intergenic
GAATTGTTTGATACAATCTC+TGG 0.409450 3_4:+81143863 None:intergenic
TTTCCTCAATTTGGTACTAC+AGG 0.418672 3_4:-81144814 Msa0526990:CDS
GGGAAGGCGTTAGGATTTGA+TGG 0.420884 3_4:-81143896 Msa0526990:CDS
CCCCAAGAAAATGGTCCATC+AGG 0.433362 3_4:+81144709 None:intergenic
GCAATAAAGCAAAATAATAT+GGG 0.436056 3_4:+81145012 None:intergenic
GTATACCAAGATAGTTGAAT+AGG 0.440524 3_4:+81144586 None:intergenic
TCATTAACTCTTGCATCATC+AGG 0.440723 3_4:+81143662 None:intergenic
GTAGGAATATTGTGTCATAA+AGG 0.444283 3_4:+81144908 None:intergenic
GAGGTCCTATTCAACTATCT+TGG 0.447585 3_4:-81144591 Msa0526990:intron
GGGTGGGCCACTGCACCTGA+TGG 0.450425 3_4:-81144724 Msa0526990:CDS
TTACTTATTAGAGAAGAGAT+TGG 0.451038 3_4:+81144934 None:intergenic
TGGAAGCTTCAATGAAGGAT+TGG 0.458638 3_4:+81144842 None:intergenic
GAATCACAGTAGTTACTTTG+AGG 0.463755 3_4:+81144661 None:intergenic
GGACCAGCAGGGAAGGCGTT+AGG 0.472444 3_4:-81143905 Msa0526990:CDS
AAATATAGTCAATGGTGGAT+TGG 0.476185 3_4:-81143696 Msa0526990:CDS
AATTATAACTATGGACCAGC+AGG 0.477533 3_4:-81143917 Msa0526990:CDS
AATCCTAACGCCTTCCCTGC+TGG 0.489708 3_4:+81143902 None:intergenic
ACATTGTGACAAGAAGGTAT+TGG 0.494924 3_4:+81143791 None:intergenic
GTGATTCTACTGACAAAGAT+TGG 0.496296 3_4:-81144645 Msa0526990:CDS
ATATTTGGAAGCTTCAATGA+AGG 0.511487 3_4:+81144837 None:intergenic
GCTTCAATGAAGGATTGGTA+AGG 0.525028 3_4:+81144847 None:intergenic
CAGATTTCACATGAAACTAC+TGG 0.531637 3_4:-81144748 Msa0526990:CDS
ATAGAAGCTAATCGCACAGC+TGG 0.541134 3_4:-81143734 Msa0526990:CDS
AGCTATCTCACGCTTTCTTG+TGG 0.548914 3_4:+81144783 None:intergenic
GGCAAAAGTTACAAAGGAAG+AGG 0.557753 3_4:-81144610 Msa0526990:CDS
ACCATCACATTGTGACAAGA+AGG 0.564779 3_4:+81143785 None:intergenic
ACATGAAACTACTGGTGGGT+GGG 0.569584 3_4:-81144740 Msa0526990:CDS
AACTCCTAAAGATGCAGAGG+AGG 0.579707 3_4:+81144984 None:intergenic
GGAAGGCGTTAGGATTTGAT+GGG 0.584389 3_4:-81143895 Msa0526990:CDS
CAACCTGTAGTACCAAATTG+AGG 0.584601 3_4:+81144811 None:intergenic
GTCAATGGTGGATTGGAATG+TGG 0.588138 3_4:-81143689 Msa0526990:CDS
CAATAAAGCAAAATAATATG+GGG 0.588254 3_4:+81145013 None:intergenic
TTTGAAGGCAAAAGTTACAA+AGG 0.591242 3_4:-81144616 Msa0526990:CDS
TCTTGTCACAATGTGATGGT+TGG 0.593829 3_4:-81143782 Msa0526990:CDS
ATGCAGTGTCATCTTTGTGT+AGG 0.594953 3_4:+81144890 None:intergenic
CACATGAAACTACTGGTGGG+TGG 0.597128 3_4:-81144741 Msa0526990:CDS
TAACTATGGACCAGCAGGGA+AGG 0.603344 3_4:-81143912 Msa0526990:CDS
CTTCAATGAAGGATTGGTAA+GGG 0.607116 3_4:+81144848 None:intergenic
AAATGGTCCATCAGGTGCAG+TGG 0.617726 3_4:+81144717 None:intergenic
GTGACAAATATAGTCAATGG+TGG 0.618848 3_4:-81143701 Msa0526990:CDS
TTGGTGACAAATATAGTCAA+TGG 0.622222 3_4:-81143704 Msa0526990:CDS
TTCAACTCCTAAAGATGCAG+AGG 0.624622 3_4:+81144981 None:intergenic
ACCTTCTTGTCACAATGTGA+TGG 0.640940 3_4:-81143786 Msa0526990:CDS
ATTTCACATGAAACTACTGG+TGG 0.650794 3_4:-81144745 Msa0526990:CDS
AATAAAGCAAAATAATATGG+GGG 0.669386 3_4:+81145014 None:intergenic
ATTATAACTATGGACCAGCA+GGG 0.676909 3_4:-81143916 Msa0526990:CDS
ATATACTAAGTTGTTCAATG+TGG 0.678623 3_4:-81143618 Msa0526990:CDS
TTTCACATGAAACTACTGGT+GGG 0.698219 3_4:-81144744 Msa0526990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACGAAATAATTACTAAAT+CGG + chr3_4:81144250-81144269 None:intergenic 15.0%
!! TTGTCAACAAAAAAAAAAAA+AGG - chr3_4:81144421-81144440 Msa0526990:intron 15.0%
!!! TCAGAAATCTTTTTAATAAT+TGG - chr3_4:81145015-81145034 Msa0526990:CDS 15.0%
!! AAAACACAAAACATATATAA+AGG + chr3_4:81145060-81145079 None:intergenic 15.0%
!! ATACGAAATAATTACTAAAT+CGG + chr3_4:81144250-81144269 None:intergenic 15.0%
!! TTGTCAACAAAAAAAAAAAA+AGG - chr3_4:81144421-81144440 Msa0526990:intron 15.0%
!!! TCAGAAATCTTTTTAATAAT+TGG - chr3_4:81145015-81145034 Msa0526990:CDS 15.0%
!! AAAACACAAAACATATATAA+AGG + chr3_4:81145060-81145079 None:intergenic 15.0%
!!! TGTCATTTTCTTTAAAAAGA+AGG + chr3_4:81143535-81143554 None:intergenic 20.0%
!! AATAAAGCAAAATAATATGG+GGG + chr3_4:81143571-81143590 None:intergenic 20.0%
!! CAATAAAGCAAAATAATATG+GGG + chr3_4:81143572-81143591 None:intergenic 20.0%
!! GCAATAAAGCAAAATAATAT+GGG + chr3_4:81143573-81143592 None:intergenic 20.0%
!! AGCAATAAAGCAAAATAATA+TGG + chr3_4:81143574-81143593 None:intergenic 20.0%
!! TACGAAATAATTACTAAATC+GGG + chr3_4:81144249-81144268 None:intergenic 20.0%
!! TGATTAAGTATAATATGGTT+GGG + chr3_4:81144482-81144501 None:intergenic 20.0%
!! TTGATTAAGTATAATATGGT+TGG + chr3_4:81144483-81144502 None:intergenic 20.0%
!!! TGTCATTTTCTTTAAAAAGA+AGG + chr3_4:81143535-81143554 None:intergenic 20.0%
!! AATAAAGCAAAATAATATGG+GGG + chr3_4:81143571-81143590 None:intergenic 20.0%
!! CAATAAAGCAAAATAATATG+GGG + chr3_4:81143572-81143591 None:intergenic 20.0%
!! GCAATAAAGCAAAATAATAT+GGG + chr3_4:81143573-81143592 None:intergenic 20.0%
!! AGCAATAAAGCAAAATAATA+TGG + chr3_4:81143574-81143593 None:intergenic 20.0%
!! TACGAAATAATTACTAAATC+GGG + chr3_4:81144249-81144268 None:intergenic 20.0%
!! TGATTAAGTATAATATGGTT+GGG + chr3_4:81144482-81144501 None:intergenic 20.0%
!! TTGATTAAGTATAATATGGT+TGG + chr3_4:81144483-81144502 None:intergenic 20.0%
! TTAGGAGTTGAATCATTTAT+TGG - chr3_4:81143612-81143631 Msa0526990:CDS 25.0%
! TAGGAGTTGAATCATTTATT+GGG - chr3_4:81143613-81143632 Msa0526990:CDS 25.0%
! TTACTTATTAGAGAAGAGAT+TGG + chr3_4:81143651-81143670 None:intergenic 25.0%
!! TCCAAATATTTTCCTCAATT+TGG - chr3_4:81143759-81143778 Msa0526990:CDS 25.0%
! ACCAAATTGAGGAAAATATT+TGG + chr3_4:81143763-81143782 None:intergenic 25.0%
!!! CATAGAAACAATTTTAGGTT+TGG + chr3_4:81144102-81144121 None:intergenic 25.0%
! TCGCTTGATTAAGTATAATA+TGG + chr3_4:81144487-81144506 None:intergenic 25.0%
! TTGTGTAGGAATTATAACTA+TGG - chr3_4:81144656-81144675 Msa0526990:CDS 25.0%
! ATATACTAAGTTGTTCAATG+TGG - chr3_4:81144964-81144983 Msa0526990:CDS 25.0%
! TTAGGAGTTGAATCATTTAT+TGG - chr3_4:81143612-81143631 Msa0526990:CDS 25.0%
! TAGGAGTTGAATCATTTATT+GGG - chr3_4:81143613-81143632 Msa0526990:CDS 25.0%
! TTACTTATTAGAGAAGAGAT+TGG + chr3_4:81143651-81143670 None:intergenic 25.0%
!! TCCAAATATTTTCCTCAATT+TGG - chr3_4:81143759-81143778 Msa0526990:CDS 25.0%
! ACCAAATTGAGGAAAATATT+TGG + chr3_4:81143763-81143782 None:intergenic 25.0%
!!! CATAGAAACAATTTTAGGTT+TGG + chr3_4:81144102-81144121 None:intergenic 25.0%
! TCGCTTGATTAAGTATAATA+TGG + chr3_4:81144487-81144506 None:intergenic 25.0%
! TTGTGTAGGAATTATAACTA+TGG - chr3_4:81144656-81144675 Msa0526990:CDS 25.0%
! ATATACTAAGTTGTTCAATG+TGG - chr3_4:81144964-81144983 Msa0526990:CDS 25.0%
GAGAAGAGATTGGTATAATA+GGG + chr3_4:81143641-81143660 None:intergenic 30.0%
AGAGAAGAGATTGGTATAAT+AGG + chr3_4:81143642-81143661 None:intergenic 30.0%
GTAGGAATATTGTGTCATAA+AGG + chr3_4:81143677-81143696 None:intergenic 30.0%
! TTGGTAAGGGTAAAAGTTTT+TGG + chr3_4:81143724-81143743 None:intergenic 30.0%
ATATTTGGAAGCTTCAATGA+AGG + chr3_4:81143748-81143767 None:intergenic 30.0%
TTTGAAGGCAAAAGTTACAA+AGG - chr3_4:81143966-81143985 Msa0526990:intron 30.0%
GTATACCAAGATAGTTGAAT+AGG + chr3_4:81143999-81144018 None:intergenic 30.0%
! GAGCTCATAGAAACAATTTT+AGG + chr3_4:81144107-81144126 None:intergenic 30.0%
! AGGATCATATGGATTAAAAC+TGG + chr3_4:81144180-81144199 None:intergenic 30.0%
! TTTGAAACTAATTTAGCGAC+CGG + chr3_4:81144293-81144312 None:intergenic 30.0%
AGCTAATGAGTTTCAGTTAA+AGG - chr3_4:81144519-81144538 Msa0526990:intron 30.0%
TACACAAAAGTTTATGAGAG+GGG + chr3_4:81144643-81144662 None:intergenic 30.0%
CTACACAAAAGTTTATGAGA+GGG + chr3_4:81144644-81144663 None:intergenic 30.0%
GAATTGTTTGATACAATCTC+TGG + chr3_4:81144722-81144741 None:intergenic 30.0%
TGTGATGGTTGGAAAATATT+TGG - chr3_4:81144811-81144830 Msa0526990:CDS 30.0%
! TTGGTGACAAATATAGTCAA+TGG - chr3_4:81144878-81144897 Msa0526990:CDS 30.0%
!! AAATATAGTCAATGGTGGAT+TGG - chr3_4:81144886-81144905 Msa0526990:CDS 30.0%
TGATATGCACAATCCAAATT+AGG + chr3_4:81144998-81145017 None:intergenic 30.0%
GAGAAGAGATTGGTATAATA+GGG + chr3_4:81143641-81143660 None:intergenic 30.0%
AGAGAAGAGATTGGTATAAT+AGG + chr3_4:81143642-81143661 None:intergenic 30.0%
GTAGGAATATTGTGTCATAA+AGG + chr3_4:81143677-81143696 None:intergenic 30.0%
! TTGGTAAGGGTAAAAGTTTT+TGG + chr3_4:81143724-81143743 None:intergenic 30.0%
ATATTTGGAAGCTTCAATGA+AGG + chr3_4:81143748-81143767 None:intergenic 30.0%
TTTGAAGGCAAAAGTTACAA+AGG - chr3_4:81143966-81143985 Msa0526990:intron 30.0%
GTATACCAAGATAGTTGAAT+AGG + chr3_4:81143999-81144018 None:intergenic 30.0%
! GAGCTCATAGAAACAATTTT+AGG + chr3_4:81144107-81144126 None:intergenic 30.0%
! AGGATCATATGGATTAAAAC+TGG + chr3_4:81144180-81144199 None:intergenic 30.0%
! TTTGAAACTAATTTAGCGAC+CGG + chr3_4:81144293-81144312 None:intergenic 30.0%
AGCTAATGAGTTTCAGTTAA+AGG - chr3_4:81144519-81144538 Msa0526990:intron 30.0%
TACACAAAAGTTTATGAGAG+GGG + chr3_4:81144643-81144662 None:intergenic 30.0%
CTACACAAAAGTTTATGAGA+GGG + chr3_4:81144644-81144663 None:intergenic 30.0%
GAATTGTTTGATACAATCTC+TGG + chr3_4:81144722-81144741 None:intergenic 30.0%
TGTGATGGTTGGAAAATATT+TGG - chr3_4:81144811-81144830 Msa0526990:CDS 30.0%
! TTGGTGACAAATATAGTCAA+TGG - chr3_4:81144878-81144897 Msa0526990:CDS 30.0%
!! AAATATAGTCAATGGTGGAT+TGG - chr3_4:81144886-81144905 Msa0526990:CDS 30.0%
TGATATGCACAATCCAAATT+AGG + chr3_4:81144998-81145017 None:intergenic 30.0%
AAATAATATGGGGGTGAGAA+TGG + chr3_4:81143562-81143581 None:intergenic 35.0%
!!! TAAGGGTAAAAGTTTTTGGC+AGG + chr3_4:81143720-81143739 None:intergenic 35.0%
! CTTCAATGAAGGATTGGTAA+GGG + chr3_4:81143737-81143756 None:intergenic 35.0%
TTTCCTCAATTTGGTACTAC+AGG - chr3_4:81143768-81143787 Msa0526990:CDS 35.0%
CAGATTTCACATGAAACTAC+TGG - chr3_4:81143834-81143853 Msa0526990:CDS 35.0%
ATTTCACATGAAACTACTGG+TGG - chr3_4:81143837-81143856 Msa0526990:CDS 35.0%
TTTCACATGAAACTACTGGT+GGG - chr3_4:81143838-81143857 Msa0526990:CDS 35.0%
! GAATCACAGTAGTTACTTTG+AGG + chr3_4:81143924-81143943 None:intergenic 35.0%
GTGATTCTACTGACAAAGAT+TGG - chr3_4:81143937-81143956 Msa0526990:intron 35.0%
! TAACTTTTGCCTTCAAAGCA+AGG + chr3_4:81143963-81143982 None:intergenic 35.0%
TGTGGATTTGGACAAAGAAT+TGG + chr3_4:81144076-81144095 None:intergenic 35.0%
!!! CAATTTTAGGTTTGGATGTG+TGG + chr3_4:81144094-81144113 None:intergenic 35.0%
AGCAGCGTTAAAATTCTTGA+CGG - chr3_4:81144154-81144173 Msa0526990:intron 35.0%
AAAACTTATTTCCCAAGCTG+AGG + chr3_4:81144205-81144224 None:intergenic 35.0%
TATTTCGTATCTGTAGTGAC+CGG - chr3_4:81144260-81144279 Msa0526990:intron 35.0%
CCTACACAAAAGTTTATGAG+AGG + chr3_4:81144645-81144664 None:intergenic 35.0%
! CCTCTCATAAACTTTTGTGT+AGG - chr3_4:81144642-81144661 Msa0526990:CDS 35.0%
AATTATAACTATGGACCAGC+AGG - chr3_4:81144665-81144684 Msa0526990:CDS 35.0%
ATTATAACTATGGACCAGCA+GGG - chr3_4:81144666-81144685 Msa0526990:CDS 35.0%
TTGCTTTCAAAACTGCTCTA+TGG - chr3_4:81144747-81144766 Msa0526990:CDS 35.0%
! TCAAAACTGCTCTATGGTTT+TGG - chr3_4:81144753-81144772 Msa0526990:CDS 35.0%
! ACATTGTGACAAGAAGGTAT+TGG + chr3_4:81144794-81144813 None:intergenic 35.0%
GTGACAAATATAGTCAATGG+TGG - chr3_4:81144881-81144900 Msa0526990:CDS 35.0%
TCATTAACTCTTGCATCATC+AGG + chr3_4:81144923-81144942 None:intergenic 35.0%
GCAAGAGTTAATGATCGAAT+TGG - chr3_4:81144929-81144948 Msa0526990:CDS 35.0%
AAGTTGTTCAATGTGGATAC+TGG - chr3_4:81144971-81144990 Msa0526990:CDS 35.0%
AAATAATATGGGGGTGAGAA+TGG + chr3_4:81143562-81143581 None:intergenic 35.0%
!!! TAAGGGTAAAAGTTTTTGGC+AGG + chr3_4:81143720-81143739 None:intergenic 35.0%
! CTTCAATGAAGGATTGGTAA+GGG + chr3_4:81143737-81143756 None:intergenic 35.0%
TTTCCTCAATTTGGTACTAC+AGG - chr3_4:81143768-81143787 Msa0526990:CDS 35.0%
CAGATTTCACATGAAACTAC+TGG - chr3_4:81143834-81143853 Msa0526990:CDS 35.0%
ATTTCACATGAAACTACTGG+TGG - chr3_4:81143837-81143856 Msa0526990:CDS 35.0%
TTTCACATGAAACTACTGGT+GGG - chr3_4:81143838-81143857 Msa0526990:CDS 35.0%
! GAATCACAGTAGTTACTTTG+AGG + chr3_4:81143924-81143943 None:intergenic 35.0%
GTGATTCTACTGACAAAGAT+TGG - chr3_4:81143937-81143956 Msa0526990:intron 35.0%
! TAACTTTTGCCTTCAAAGCA+AGG + chr3_4:81143963-81143982 None:intergenic 35.0%
TGTGGATTTGGACAAAGAAT+TGG + chr3_4:81144076-81144095 None:intergenic 35.0%
!!! CAATTTTAGGTTTGGATGTG+TGG + chr3_4:81144094-81144113 None:intergenic 35.0%
AGCAGCGTTAAAATTCTTGA+CGG - chr3_4:81144154-81144173 Msa0526990:intron 35.0%
AAAACTTATTTCCCAAGCTG+AGG + chr3_4:81144205-81144224 None:intergenic 35.0%
TATTTCGTATCTGTAGTGAC+CGG - chr3_4:81144260-81144279 Msa0526990:intron 35.0%
CCTACACAAAAGTTTATGAG+AGG + chr3_4:81144645-81144664 None:intergenic 35.0%
! CCTCTCATAAACTTTTGTGT+AGG - chr3_4:81144642-81144661 Msa0526990:CDS 35.0%
AATTATAACTATGGACCAGC+AGG - chr3_4:81144665-81144684 Msa0526990:CDS 35.0%
ATTATAACTATGGACCAGCA+GGG - chr3_4:81144666-81144685 Msa0526990:CDS 35.0%
TTGCTTTCAAAACTGCTCTA+TGG - chr3_4:81144747-81144766 Msa0526990:CDS 35.0%
! TCAAAACTGCTCTATGGTTT+TGG - chr3_4:81144753-81144772 Msa0526990:CDS 35.0%
! ACATTGTGACAAGAAGGTAT+TGG + chr3_4:81144794-81144813 None:intergenic 35.0%
GTGACAAATATAGTCAATGG+TGG - chr3_4:81144881-81144900 Msa0526990:CDS 35.0%
TCATTAACTCTTGCATCATC+AGG + chr3_4:81144923-81144942 None:intergenic 35.0%
GCAAGAGTTAATGATCGAAT+TGG - chr3_4:81144929-81144948 Msa0526990:CDS 35.0%
AAGTTGTTCAATGTGGATAC+TGG - chr3_4:81144971-81144990 Msa0526990:CDS 35.0%
TTCAACTCCTAAAGATGCAG+AGG + chr3_4:81143604-81143623 None:intergenic 40.0%
ATGCAGTGTCATCTTTGTGT+AGG + chr3_4:81143695-81143714 None:intergenic 40.0%
! GCTTCAATGAAGGATTGGTA+AGG + chr3_4:81143738-81143757 None:intergenic 40.0%
TGGAAGCTTCAATGAAGGAT+TGG + chr3_4:81143743-81143762 None:intergenic 40.0%
CAACCTGTAGTACCAAATTG+AGG + chr3_4:81143774-81143793 None:intergenic 40.0%
!! ACCTGATGGACCATTTTCTT+GGG - chr3_4:81143872-81143891 Msa0526990:CDS 40.0%
AAGCATAAGCCCCAAGAAAA+TGG + chr3_4:81143885-81143904 None:intergenic 40.0%
!! AAAGATTGGCCTTGCTTTGA+AGG - chr3_4:81143951-81143970 Msa0526990:intron 40.0%
GGCAAAAGTTACAAAGGAAG+AGG - chr3_4:81143972-81143991 Msa0526990:intron 40.0%
GAGGTCCTATTCAACTATCT+TGG - chr3_4:81143991-81144010 Msa0526990:intron 40.0%
TAGGTTTGGATGTGTGGATT+TGG + chr3_4:81144088-81144107 None:intergenic 40.0%
! TGTAGTGACCGGTTTATAAC+CGG - chr3_4:81144271-81144290 Msa0526990:intron 40.0%
TTTAGCGACCGGTTATAAAC+CGG + chr3_4:81144282-81144301 None:intergenic 40.0%
ACCTTCTTGTCACAATGTGA+TGG - chr3_4:81144796-81144815 Msa0526990:CDS 40.0%
ACCATCACATTGTGACAAGA+AGG + chr3_4:81144800-81144819 None:intergenic 40.0%
TCTTGTCACAATGTGATGGT+TGG - chr3_4:81144800-81144819 Msa0526990:CDS 40.0%
TGTGGATACTGGACCTAATT+TGG - chr3_4:81144982-81145001 Msa0526990:CDS 40.0%
TTCAACTCCTAAAGATGCAG+AGG + chr3_4:81143604-81143623 None:intergenic 40.0%
ATGCAGTGTCATCTTTGTGT+AGG + chr3_4:81143695-81143714 None:intergenic 40.0%
! GCTTCAATGAAGGATTGGTA+AGG + chr3_4:81143738-81143757 None:intergenic 40.0%
TGGAAGCTTCAATGAAGGAT+TGG + chr3_4:81143743-81143762 None:intergenic 40.0%
CAACCTGTAGTACCAAATTG+AGG + chr3_4:81143774-81143793 None:intergenic 40.0%
!! ACCTGATGGACCATTTTCTT+GGG - chr3_4:81143872-81143891 Msa0526990:CDS 40.0%
AAGCATAAGCCCCAAGAAAA+TGG + chr3_4:81143885-81143904 None:intergenic 40.0%
!! AAAGATTGGCCTTGCTTTGA+AGG - chr3_4:81143951-81143970 Msa0526990:intron 40.0%
GGCAAAAGTTACAAAGGAAG+AGG - chr3_4:81143972-81143991 Msa0526990:intron 40.0%
GAGGTCCTATTCAACTATCT+TGG - chr3_4:81143991-81144010 Msa0526990:intron 40.0%
TAGGTTTGGATGTGTGGATT+TGG + chr3_4:81144088-81144107 None:intergenic 40.0%
! TGTAGTGACCGGTTTATAAC+CGG - chr3_4:81144271-81144290 Msa0526990:intron 40.0%
TTTAGCGACCGGTTATAAAC+CGG + chr3_4:81144282-81144301 None:intergenic 40.0%
ACCTTCTTGTCACAATGTGA+TGG - chr3_4:81144796-81144815 Msa0526990:CDS 40.0%
ACCATCACATTGTGACAAGA+AGG + chr3_4:81144800-81144819 None:intergenic 40.0%
TCTTGTCACAATGTGATGGT+TGG - chr3_4:81144800-81144819 Msa0526990:CDS 40.0%
TGTGGATACTGGACCTAATT+TGG - chr3_4:81144982-81145001 Msa0526990:CDS 40.0%
CTTTCCTCCTCTGCATCTTT+AGG - chr3_4:81143594-81143613 Msa0526990:CDS 45.0%
AACTCCTAAAGATGCAGAGG+AGG + chr3_4:81143601-81143620 None:intergenic 45.0%
AGCTATCTCACGCTTTCTTG+TGG + chr3_4:81143802-81143821 None:intergenic 45.0%
! ACATGAAACTACTGGTGGGT+GGG - chr3_4:81143842-81143861 Msa0526990:CDS 45.0%
!! CACCTGATGGACCATTTTCT+TGG - chr3_4:81143871-81143890 Msa0526990:CDS 45.0%
!! CCTGATGGACCATTTTCTTG+GGG - chr3_4:81143873-81143892 Msa0526990:CDS 45.0%
AAGCTGAGGTGAGGATCATA+TGG + chr3_4:81144191-81144210 None:intergenic 45.0%
ATATGATCCTCACCTCAGCT+TGG - chr3_4:81144190-81144209 Msa0526990:intron 45.0%
TATGATCCTCACCTCAGCTT+GGG - chr3_4:81144191-81144210 Msa0526990:intron 45.0%
TTATTTCCCAAGCTGAGGTG+AGG + chr3_4:81144200-81144219 None:intergenic 45.0%
!! GGAAGGCGTTAGGATTTGAT+GGG - chr3_4:81144687-81144706 Msa0526990:CDS 45.0%
ATAGAAGCTAATCGCACAGC+TGG - chr3_4:81144848-81144867 Msa0526990:CDS 45.0%
!! GTCAATGGTGGATTGGAATG+TGG - chr3_4:81144893-81144912 Msa0526990:CDS 45.0%
CTTTCCTCCTCTGCATCTTT+AGG - chr3_4:81143594-81143613 Msa0526990:CDS 45.0%
AACTCCTAAAGATGCAGAGG+AGG + chr3_4:81143601-81143620 None:intergenic 45.0%
AGCTATCTCACGCTTTCTTG+TGG + chr3_4:81143802-81143821 None:intergenic 45.0%
! ACATGAAACTACTGGTGGGT+GGG - chr3_4:81143842-81143861 Msa0526990:CDS 45.0%
!! CACCTGATGGACCATTTTCT+TGG - chr3_4:81143871-81143890 Msa0526990:CDS 45.0%
!! CCTGATGGACCATTTTCTTG+GGG - chr3_4:81143873-81143892 Msa0526990:CDS 45.0%
AAGCTGAGGTGAGGATCATA+TGG + chr3_4:81144191-81144210 None:intergenic 45.0%
ATATGATCCTCACCTCAGCT+TGG - chr3_4:81144190-81144209 Msa0526990:intron 45.0%
TATGATCCTCACCTCAGCTT+GGG - chr3_4:81144191-81144210 Msa0526990:intron 45.0%
TTATTTCCCAAGCTGAGGTG+AGG + chr3_4:81144200-81144219 None:intergenic 45.0%
!! GGAAGGCGTTAGGATTTGAT+GGG - chr3_4:81144687-81144706 Msa0526990:CDS 45.0%
ATAGAAGCTAATCGCACAGC+TGG - chr3_4:81144848-81144867 Msa0526990:CDS 45.0%
!! GTCAATGGTGGATTGGAATG+TGG - chr3_4:81144893-81144912 Msa0526990:CDS 45.0%
!! TATTAGATTAAATTATTATT+TGG - chr3_4:81144043-81144062 Msa0526990:intron 5.0%
!! TATTAGATTAAATTATTATT+TGG - chr3_4:81144043-81144062 Msa0526990:intron 5.0%
CACATGAAACTACTGGTGGG+TGG - chr3_4:81143841-81143860 Msa0526990:CDS 50.0%
AAATGGTCCATCAGGTGCAG+TGG + chr3_4:81143868-81143887 None:intergenic 50.0%
CCCCAAGAAAATGGTCCATC+AGG + chr3_4:81143876-81143895 None:intergenic 50.0%
TAACTATGGACCAGCAGGGA+AGG - chr3_4:81144670-81144689 Msa0526990:CDS 50.0%
!! GGGAAGGCGTTAGGATTTGA+TGG - chr3_4:81144686-81144705 Msa0526990:CDS 50.0%
!! GCTAATCGCACAGCTGGTTT+TGG - chr3_4:81144854-81144873 Msa0526990:CDS 50.0%
!!! TCGCACAGCTGGTTTTGGAT+TGG - chr3_4:81144859-81144878 Msa0526990:CDS 50.0%
CACATGAAACTACTGGTGGG+TGG - chr3_4:81143841-81143860 Msa0526990:CDS 50.0%
AAATGGTCCATCAGGTGCAG+TGG + chr3_4:81143868-81143887 None:intergenic 50.0%
CCCCAAGAAAATGGTCCATC+AGG + chr3_4:81143876-81143895 None:intergenic 50.0%
TAACTATGGACCAGCAGGGA+AGG - chr3_4:81144670-81144689 Msa0526990:CDS 50.0%
!! GGGAAGGCGTTAGGATTTGA+TGG - chr3_4:81144686-81144705 Msa0526990:CDS 50.0%
!! GCTAATCGCACAGCTGGTTT+TGG - chr3_4:81144854-81144873 Msa0526990:CDS 50.0%
!!! TCGCACAGCTGGTTTTGGAT+TGG - chr3_4:81144859-81144878 Msa0526990:CDS 50.0%
AATCCTAACGCCTTCCCTGC+TGG + chr3_4:81144683-81144702 None:intergenic 55.0%
AATCCTAACGCCTTCCCTGC+TGG + chr3_4:81144683-81144702 None:intergenic 55.0%
!! GGACCAGCAGGGAAGGCGTT+AGG - chr3_4:81144677-81144696 Msa0526990:CDS 65.0%
!! GGACCAGCAGGGAAGGCGTT+AGG - chr3_4:81144677-81144696 Msa0526990:CDS 65.0%
GGGTGGGCCACTGCACCTGA+TGG - chr3_4:81143858-81143877 Msa0526990:CDS 70.0%
GGGTGGGCCACTGCACCTGA+TGG - chr3_4:81143858-81143877 Msa0526990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81143516 81145088 81143516 ID=Msa0526990;Name=Msa0526990
chr3_4 mRNA 81143516 81145088 81143516 ID=Msa0526990-mRNA-1;Parent=Msa0526990;Name=Msa0526990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33|1|1|1|1|1|2|58|276
chr3_4 exon 81143516 81143940 81143516 ID=Msa0526990-mRNA-1:exon:24471;Parent=Msa0526990-mRNA-1
chr3_4 exon 81144592 81145088 81144592 ID=Msa0526990-mRNA-1:exon:24470;Parent=Msa0526990-mRNA-1
chr3_4 five_prime_UTR 81145056 81145088 81145056 ID=Msa0526990-mRNA-1:five_prime_utr;Parent=Msa0526990-mRNA-1
chr3_4 CDS 81144592 81145055 81144592 ID=Msa0526990-mRNA-1:cds;Parent=Msa0526990-mRNA-1
chr3_4 CDS 81143574 81143940 81143574 ID=Msa0526990-mRNA-1:cds;Parent=Msa0526990-mRNA-1
chr3_4 three_prime_UTR 81143516 81143573 81143516 ID=Msa0526990-mRNA-1:three_prime_utr;Parent=Msa0526990-mRNA-1
Gene Sequence

>Msa0526990

ATGACATTTTCCATTCTCACCCCCATATTATTTTGCTTTATTGCTCTTTCCTCCTCTGCATCTTTAGGAGTTGAATCATTTATTGGGTACCCTATTATACCAATCTCTTCTCTAATAAGTAAAAACCTTTATGACACAATATTCCTACACAAAGATGACACTGCATGTCCTGCCAAAAACTTTTACCCTTACCAATCCTTCATTGAAGCTTCCAAATATTTTCCTCAATTTGGTACTACAGGTTGTTTGACCACAAGAAAGCGTGAGATAGCTGCTTTTCTTGCTCAGATTTCACATGAAACTACTGGTGGGTGGGCCACTGCACCTGATGGACCATTTTCTTGGGGCTTATGCTTCAAAGAAGAAATTAGTCCTCAAAGTAACTACTGTGATTCTACTGACAAAGATTGGCCTTGCTTTGAAGGCAAAAGTTACAAAGGAAGAGGTCCTATTCAACTATCTTGGAATTATAACTATGGACCAGCAGGGAAGGCGTTAGGATTTGATGGGCTGAGAAATCCAGAGATTGTATCAAACAATTCAGTGATTGCTTTCAAAACTGCTCTATGGTTTTGGATGACAGAGAGAAAACCAATACCTTCTTGTCACAATGTGATGGTTGGAAAATATTTGGCAACAAAAGCTGACATAGAAGCTAATCGCACAGCTGGTTTTGGATTGGTGACAAATATAGTCAATGGTGGATTGGAATGTGGAATTCCTGATGATGCAAGAGTTAATGATCGAATTGGATTTTTTCAAAGATATACTAAGTTGTTCAATGTGGATACTGGACCTAATTTGGATTGTGCATATCAGAAATCTTTTTAA

Protein sequence

>Msa0526990

MTFSILTPILFCFIALSSSASLGVESFIGYPIIPISSLISKNLYDTIFLHKDDTACPAKNFYPYQSFIEASKYFPQFGTTGCLTTRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEISPQSNYCDSTDKDWPCFEGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPIPSCHNVMVGKYLATKADIEANRTAGFGLVTNIVNGGLECGIPDDARVNDRIGFFQRYTKLFNVDTGPNLDCAYQKSF*