AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015070 MtrunA17_Chr4g0057321 93.694 444 10 3 1 443 1 427 0.0 850
Msa0015070 MtrunA17_Chr6g0472551 40.113 354 179 10 106 442 119 456 8.56e-60 202
Msa0015070 MtrunA17_Chr1g0203711 41.905 315 149 10 97 398 108 401 5.63e-52 181
Msa0015070 MtrunA17_Chr8g0340761 37.528 453 172 18 1 408 1 387 6.47e-37 139
Msa0015070 MtrunA17_Chr1g0204901 33.636 440 194 15 27 434 46 419 3.70e-36 138
Msa0015070 MtrunA17_Chr8g0389781 34.462 325 171 9 103 417 125 417 2.49e-30 122
Msa0015070 MtrunA17_Chr8g0346021 30.445 427 216 13 34 388 50 467 1.52e-26 112
Msa0015070 MtrunA17_Chr1g0166431 41.176 170 79 5 1 156 7 169 2.03e-21 96.3
Msa0015070 MtrunA17_Chr2g0330921 37.912 182 62 5 1 160 1 153 5.78e-20 90.9
Msa0015070 MtrunA17_Chr7g0273951 28.049 410 190 13 1 389 1 326 4.31e-19 88.6
Msa0015070 MtrunA17_Chr4g0020671 29.043 303 162 10 99 387 93 356 3.50e-17 83.6
Msa0015070 MtrunA17_Chr4g0025441 35.152 165 79 3 1 155 1 147 4.65e-16 80.1
Msa0015070 MtrunA17_Chr1g0172611 26.246 301 154 11 106 390 107 355 1.39e-14 75.1
Msa0015070 MtrunA17_Chr3g0135851 35.484 155 87 5 1 155 1 142 2.48e-13 71.6
Msa0015070 MtrunA17_Chr8g0371131 53.968 63 29 0 102 164 69 131 2.02e-12 64.7
Msa0015070 MtrunA17_Chr7g0273861 41.085 129 54 4 63 170 63 190 7.28e-12 67.0
Msa0015070 MtrunA17_Chr4g0045641 49.180 61 31 0 106 166 148 208 2.60e-11 65.5
Msa0015070 MtrunA17_Chr4g0060381 49.180 61 31 0 100 160 96 156 2.98e-11 65.5
Msa0015070 MtrunA17_Chr1g0200161 45.455 77 41 1 98 174 135 210 6.19e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015070 AT4G23060.1 43.539 356 147 16 104 443 167 484 4.84e-65 217
Msa0015070 AT3G16490.1 31.311 412 190 13 1 394 1 337 6.00e-34 131
Msa0015070 AT5G07240.1 35.122 410 185 12 12 403 1 347 1.07e-28 117
Msa0015070 AT5G07240.2 34.472 322 138 10 92 403 135 393 1.36e-28 117
Msa0015070 AT5G62070.1 36.928 306 125 11 103 404 116 357 1.41e-26 111
Msa0015070 AT4G14750.1 40.936 171 82 5 1 161 1 162 2.36e-23 101
Msa0015070 AT4G14750.2 40.936 171 82 5 1 161 60 221 3.70e-23 101
Msa0015070 AT4G14750.3 40.936 171 82 5 1 161 60 221 3.75e-23 102
Msa0015070 AT1G51960.1 38.547 179 82 4 1 167 1 163 5.31e-21 94.4
Msa0015070 AT3G49380.1 40.625 160 78 4 25 183 46 189 8.84e-19 87.8
Msa0015070 AT1G01110.2 63.077 65 24 0 98 162 115 179 7.24e-16 80.1
Msa0015070 AT4G00820.1 65.574 61 21 0 102 162 130 190 1.09e-15 79.7
Msa0015070 AT4G10640.1 36.552 145 77 3 15 159 26 155 1.58e-15 78.6
Msa0015070 AT4G29150.1 33.333 189 97 5 1 169 17 196 3.79e-15 77.4
Msa0015070 AT2G26180.1 34.810 158 77 3 1 155 1 135 7.06e-15 76.6
Msa0015070 AT1G17480.1 43.820 89 43 1 98 186 88 169 4.25e-14 73.9
Msa0015070 AT3G49260.3 57.143 70 29 1 103 172 119 187 1.81e-13 72.4
Msa0015070 AT3G49260.1 57.143 70 29 1 103 172 119 187 1.85e-13 72.4
Msa0015070 AT3G49260.4 57.143 70 29 1 103 172 119 187 1.85e-13 72.4
Msa0015070 AT3G49260.2 57.143 70 29 1 103 172 119 187 1.85e-13 72.4
Msa0015070 AT5G13460.1 30.114 176 100 4 9 167 5 174 2.67e-13 72.0
Msa0015070 AT1G72670.1 53.125 64 30 0 101 164 90 153 7.30e-13 70.5
Msa0015070 AT5G03040.1 36.607 112 71 0 69 180 80 191 1.47e-12 69.7
Msa0015070 AT5G03040.3 36.607 112 71 0 69 180 80 191 1.47e-12 69.7
Msa0015070 AT5G03040.2 36.607 112 71 0 69 180 80 191 1.47e-12 69.7
Msa0015070 AT3G22190.3 66.667 54 18 0 102 155 86 139 1.51e-12 69.3
Msa0015070 AT3G22190.2 66.667 54 18 0 102 155 86 139 1.51e-12 69.3
Msa0015070 AT3G22190.4 66.667 54 18 0 102 155 86 139 1.51e-12 69.3
Msa0015070 AT3G22190.1 66.667 54 18 0 102 155 86 139 1.51e-12 69.3
Msa0015070 AT1G74690.1 39.583 96 55 2 81 176 92 184 3.62e-12 68.9
Msa0015070 AT1G18840.1 31.737 167 105 2 1 160 1 165 6.42e-12 68.2
Msa0015070 AT1G18840.3 31.737 167 105 2 1 160 1 165 6.42e-12 68.2
Msa0015070 AT1G18840.2 31.737 167 105 2 1 160 1 165 6.42e-12 68.2
Msa0015070 AT1G14380.1 30.256 195 104 10 1 180 1 178 9.82e-12 67.4
Msa0015070 AT1G14380.3 30.256 195 104 10 1 180 1 178 9.82e-12 67.4
Msa0015070 AT1G14380.4 30.256 195 104 10 1 180 1 178 9.82e-12 67.4
Msa0015070 AT1G14380.6 30.256 195 104 10 1 180 1 178 1.06e-11 67.4
Msa0015070 AT1G14380.5 30.256 195 104 10 1 180 1 178 1.06e-11 67.4
Msa0015070 AT1G14380.2 30.256 195 104 10 1 180 1 178 1.06e-11 67.4
Msa0015070 AT1G14380.7 30.256 195 104 10 1 180 1 178 1.12e-11 67.4
Msa0015070 AT3G51380.1 55.556 63 28 0 102 164 35 97 1.50e-11 61.2
Msa0015070 AT3G52290.1 54.386 57 26 0 103 159 107 163 2.36e-11 65.9
Msa0015070 AT2G43680.4 49.180 61 31 0 106 166 324 384 2.62e-11 66.2
Msa0015070 AT2G43680.2 49.180 61 31 0 106 166 324 384 2.62e-11 66.2
Msa0015070 AT2G43680.3 49.180 61 31 0 106 166 324 384 2.62e-11 66.2
Msa0015070 AT2G43680.5 49.180 61 31 0 106 166 324 384 2.62e-11 66.2
Msa0015070 AT2G43680.1 49.180 61 31 0 106 166 325 385 2.69e-11 66.2

Find 109 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGTTAATTTCTGTTAAA+AGG 0.117789 1_1:-24398631 Msa0015070:three_prime_UTR
AAGGCACTGCGAGCATTAAA+AGG 0.242876 1_1:-24400002 Msa0015070:CDS
CTCCATCTACGTTTCTCTTT+AGG 0.251832 1_1:+24401899 None:intergenic
TCATATTGAGGCCTTTGTTT+TGG 0.270764 1_1:+24398817 None:intergenic
TCGCTTCTTGTAGGAGTAAA+AGG 0.280382 1_1:+24398934 None:intergenic
GAAGAAAGAGGGTCTTGTTT+TGG 0.282895 1_1:+24402101 None:intergenic
CATTTATCTTGCTAACTAAC+TGG 0.290894 1_1:-24398557 Msa0015070:three_prime_UTR
AGGATTGTTGAAATTGATTC+GGG 0.318333 1_1:-24399213 Msa0015070:CDS
GCCGTTGGAGAGACAAGATT+TGG 0.337489 1_1:+24399329 None:intergenic
CTTGGGCCATCGCTTCTTGT+AGG 0.342169 1_1:+24398925 None:intergenic
GAATCAAAATCTCATCAATT+TGG 0.345515 1_1:-24399099 Msa0015070:CDS
AGAAATCGAGTTCATCAAAT+AGG 0.349033 1_1:-24398795 Msa0015070:CDS
AGATGGTTTCGTGGCCTTCT+TGG 0.360236 1_1:-24401965 Msa0015070:CDS
CTATCCTGGTTCCGGTCGTT+TGG 0.371033 1_1:-24398692 Msa0015070:CDS
ACTAACTGGTTGTAATTTGT+TGG 0.374245 1_1:-24398543 Msa0015070:three_prime_UTR
ACCAAAGTAATTTCAGCTCT+TGG 0.375782 1_1:+24398461 None:intergenic
TATATTTCATTGCAGAGAAA+TGG 0.378982 1_1:-24399354 Msa0015070:intron
TAGGATTGTTGAAATTGATT+CGG 0.384536 1_1:-24399214 Msa0015070:CDS
TTCTGACTGTAATAATAATC+AGG 0.390223 1_1:+24399138 None:intergenic
TTCATGCTCCTAGATCTAAC+AGG 0.395194 1_1:+24399495 None:intergenic
AGCTGCCACGGCAGCGGCTG+CGG 0.395461 1_1:-24401777 Msa0015070:CDS
TGGACACGACATGGCAAGAT+TGG 0.396032 1_1:-24398761 Msa0015070:CDS
CGATGGCCTGTCTGTTGTTA+TGG 0.400810 1_1:+24401807 None:intergenic
AAAATAGAGTGAGAACTAGA+AGG 0.408407 1_1:+24402021 None:intergenic
CTGAAAGCCCTGTTAGATCT+AGG 0.408830 1_1:-24399503 Msa0015070:CDS
AGCAAAGGCTATCCTGGTTC+CGG 0.408863 1_1:-24398700 Msa0015070:CDS
AATGTTAATTTCTGTTAAAA+GGG 0.409164 1_1:-24398630 Msa0015070:three_prime_UTR
TACACTTTCTACATATCAAT+GGG 0.412429 1_1:-24401998 Msa0015070:exon
GAGTGAGATGAATGAGAGGA+TGG 0.413990 1_1:+24402053 None:intergenic
TTCTGATATGTTGCCGCCGT+TGG 0.430895 1_1:+24399314 None:intergenic
CTGTATAAGCCATGTAGCTT+GGG 0.434818 1_1:+24398875 None:intergenic
CATCGCTGTGGCAGCTGCCA+CGG 0.435054 1_1:-24401789 Msa0015070:CDS
AGCCTCTAACGTAGCATCTT+GGG 0.436895 1_1:+24398908 None:intergenic
GGCCCAAGATGCTACGTTAG+AGG 0.438129 1_1:-24398910 Msa0015070:CDS
CACCTAAAGAGAAACGTAGA+TGG 0.439241 1_1:-24401901 Msa0015070:CDS
TTACACTTTCTACATATCAA+TGG 0.439785 1_1:-24401999 Msa0015070:exon
CTAACTGGTTGTAATTTGTT+GGG 0.445601 1_1:-24398542 Msa0015070:three_prime_UTR
TAGCCTCTAACGTAGCATCT+TGG 0.450179 1_1:+24398907 None:intergenic
GTGAGATGAATGAGAGGATG+GGG 0.450430 1_1:+24402055 None:intergenic
TTCACTAGCAAAGGCTATCC+TGG 0.450957 1_1:-24398706 Msa0015070:CDS
TGCCACGGCAGCGGCTGCGG+AGG 0.471769 1_1:-24401774 Msa0015070:CDS
ATCAGTTAGACGAACAATCA+TGG 0.472299 1_1:-24399290 Msa0015070:CDS
TCCGGTCGTTTGGATAAGCT+TGG 0.473131 1_1:-24398682 Msa0015070:CDS
TCTGTATAAGCCATGTAGCT+TGG 0.474265 1_1:+24398874 None:intergenic
CGTCAGGATACGCGAACAAT+GGG 0.483008 1_1:-24401687 Msa0015070:CDS
TGTGGCAGCTGCCACGGCAG+CGG 0.485488 1_1:-24401783 Msa0015070:CDS
CATCTACGTTTCTCTTTAGG+TGG 0.491070 1_1:+24401902 None:intergenic
CGTGGCAGCTGCCACAGCGA+TGG 0.491710 1_1:+24401790 None:intergenic
AACCTCCGCAGCCGCTGCCG+TGG 0.492017 1_1:+24401772 None:intergenic
TGTGACCTCTCACCAGTGCT+TGG 0.493392 1_1:+24399967 None:intergenic
AGATTTAATTACAGCAGTAA+TGG 0.493826 1_1:-24401713 Msa0015070:CDS
TTGAAATTGTTAGGCAAGGA+AGG 0.494374 1_1:-24400021 Msa0015070:intron
CATCAATATCTATACCCTAC+AGG 0.494588 1_1:+24398655 None:intergenic
AAGAGAGTGAGATGAATGAG+AGG 0.497424 1_1:+24402049 None:intergenic
TTGTTATGGACATGTTCTGT+TGG 0.504792 1_1:+24401821 None:intergenic
AACTTCCACGAAAAGCGGCT+TGG 0.506836 1_1:+24401651 None:intergenic
GATCACTTGTGGAGTAAAAG+AGG 0.507191 1_1:+24399160 None:intergenic
GAACTCGATTTCTCATATTG+AGG 0.508205 1_1:+24398805 None:intergenic
GTTGTGAAACTTCATCTTTG+TGG 0.509539 1_1:-24398520 Msa0015070:three_prime_UTR
TAGAGTGAGAACTAGAAGGA+AGG 0.512968 1_1:+24402025 None:intergenic
AACCAAACTTCCACGAAAAG+CGG 0.516897 1_1:+24401646 None:intergenic
TCAAATAGGTACTCACTCAA+TGG 0.517109 1_1:-24398781 Msa0015070:CDS
GAGTGAGTGAAAGAAGAAAG+AGG 0.518838 1_1:+24402089 None:intergenic
AGTGAGATGAATGAGAGGAT+GGG 0.521024 1_1:+24402054 None:intergenic
CTCTGATTACCCAAGCTACA+TGG 0.521640 1_1:-24398884 Msa0015070:CDS
ACAGCAGTAATGGCATCGTC+AGG 0.529912 1_1:-24401703 Msa0015070:CDS
TCAGAATTTGACCCCTTCAA+AGG 0.531017 1_1:-24399121 Msa0015070:CDS
TGCACTCATAGATCTAACTT+TGG 0.539356 1_1:+24398840 None:intergenic
ATGAAATCTGAGCATTCACC+TGG 0.541331 1_1:-24399477 Msa0015070:CDS
GATAAGCTTGGAATGCCTGT+AGG 0.551546 1_1:-24398670 Msa0015070:CDS
CAAGAAAATACCTTGAGTCC+AGG 0.551923 1_1:+24399459 None:intergenic
TCTGCAACTTCAAAAGATGA+TGG 0.554569 1_1:-24398970 Msa0015070:CDS
ACTGCGAGCATTAAAAGGGC+TGG 0.555861 1_1:-24399997 Msa0015070:CDS
TGAGATGAATGAGAGGATGG+GGG 0.561698 1_1:+24402056 None:intergenic
CAAGCAAGCTTCACTAGCAA+AGG 0.562259 1_1:-24398715 Msa0015070:CDS
AGTGAGTGAAAGAAGAAAGA+GGG 0.563403 1_1:+24402090 None:intergenic
TCCAAGCTTATCCAAACGAC+CGG 0.564514 1_1:+24398681 None:intergenic
AGGCACTGCGAGCATTAAAA+GGG 0.564754 1_1:-24400001 Msa0015070:CDS
ATAAGCTTGGAATGCCTGTA+GGG 0.568830 1_1:-24398669 Msa0015070:CDS
TGGTGAGAGGTCACATTGAG+AGG 0.570721 1_1:-24399959 Msa0015070:CDS
CACTAATAAGAACATATAGC+AGG 0.570955 1_1:-24399254 Msa0015070:CDS
TGAGCATTCACCTGGACTCA+AGG 0.572382 1_1:-24399469 Msa0015070:intron
GCTGGTGAAACTCCAAGCAC+TGG 0.572685 1_1:-24399979 Msa0015070:CDS
TCGTCAGGATACGCGAACAA+TGG 0.574295 1_1:-24401688 Msa0015070:CDS
CCCACTAAAACTTAACGAAG+TGG 0.574632 1_1:-24399040 Msa0015070:CDS
CTCACTCAATGGACACGACA+TGG 0.576134 1_1:-24398770 Msa0015070:CDS
CAATGCAGATGTTCTTTGTG+CGG 0.577984 1_1:+24398738 None:intergenic
TTATCCAAACGACCGGAACC+AGG 0.578361 1_1:+24398688 None:intergenic
GTTGCAGATGATAAAAGTTG+AGG 0.588792 1_1:+24398985 None:intergenic
TGGTCAAAGTGTATCTTGTG+AGG 0.590678 1_1:-24399079 Msa0015070:CDS
AAAGCATCAAGATGGTTTCG+TGG 0.592249 1_1:-24401974 Msa0015070:CDS
ATAATAATCAGGATCACTTG+TGG 0.594762 1_1:+24399149 None:intergenic
CAATGGGAAAAGCATCAAGA+TGG 0.597654 1_1:-24401982 Msa0015070:CDS
ATTCAAATGTGACGTTTGCA+TGG 0.610840 1_1:+24399863 None:intergenic
GAGATGAATGAGAGGATGGG+GGG 0.612291 1_1:+24402057 None:intergenic
ACATGTCCATAACAACAGAC+AGG 0.613391 1_1:-24401813 Msa0015070:CDS
TCCAAATCTTGTCTCTCCAA+CGG 0.613971 1_1:-24399330 Msa0015070:CDS
TTTACTCCTACAAGAAGCGA+TGG 0.621425 1_1:-24398931 Msa0015070:CDS
AAATCTTGTCTCTCCAACGG+CGG 0.624695 1_1:-24399327 Msa0015070:CDS
AAATGCTCAAAATGCTGCCG+AGG 0.628374 1_1:-24401741 Msa0015070:CDS
AAACTCCAAGCACTGGTGAG+AGG 0.631533 1_1:-24399972 Msa0015070:CDS
CTATGAGTGCACCAAAACAA+AGG 0.632089 1_1:-24398828 Msa0015070:CDS
GGCTTATACAGAGTCAGCAA+AGG 0.639300 1_1:-24398863 Msa0015070:CDS
GTAATTAAATCTGACAACCT+CGG 0.643378 1_1:+24401724 None:intergenic
TAATTACACATACATAGAGG+TGG 0.652638 1_1:+24399823 None:intergenic
TCATGCTCCTAGATCTAACA+GGG 0.657366 1_1:+24399496 None:intergenic
CAACAGACAGGCCATCGCTG+TGG 0.692042 1_1:-24401801 Msa0015070:CDS
AGAGGAAACGAACAGCAGAG+TGG 0.734572 1_1:-24399941 Msa0015070:CDS
GTTCTGTTGGAAACGTGACG+TGG 0.750062 1_1:+24401834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATTAAAATTTAT+TGG + chr1_1:24399083-24399102 None:intergenic 0.0%
!! TAAAATTAAAATTTATTGGT+GGG + chr1_1:24399079-24399098 None:intergenic 10.0%
!! ATAAAATTAAAATTTATTGG+TGG + chr1_1:24399080-24399099 None:intergenic 10.0%
!!! AAAATGTTTTTTCAAAAAAA+AGG + chr1_1:24400000-24400019 None:intergenic 10.0%
!!! TTTTAAATATTGAAATTGTT+AGG - chr1_1:24400544-24400563 Msa0015070:intron 10.0%
!!! TTTAGTTTTATTAATGAATG+TGG - chr1_1:24399466-24399485 Msa0015070:intron 15.0%
!!! TTAATAGAAGTTATTTCATT+CGG - chr1_1:24400161-24400180 Msa0015070:intron 15.0%
!!! ATCATTCTTTTTTTTTGAAA+CGG - chr1_1:24400270-24400289 Msa0015070:intron 15.0%
!! TAATGTTAATTTCTGTTAAA+AGG - chr1_1:24401943-24401962 Msa0015070:CDS 15.0%
!! AATGTTAATTTCTGTTAAAA+GGG - chr1_1:24401944-24401963 Msa0015070:CDS 15.0%
!! AATTATGGGAATGAAATTAA+TGG + chr1_1:24398959-24398978 None:intergenic 20.0%
!! TTTATGATGTTTCCTTTATT+TGG - chr1_1:24399231-24399250 Msa0015070:CDS 20.0%
!!! ATAGTTCTGTAAATTTTACA+TGG + chr1_1:24399369-24399388 None:intergenic 20.0%
!! TTATTTAACTACAAAAAGGA+CGG + chr1_1:24399579-24399598 None:intergenic 20.0%
!! GTCATTATTTAACTACAAAA+AGG + chr1_1:24399583-24399602 None:intergenic 20.0%
!! TAAATAATGACATTCAACTT+TGG - chr1_1:24399592-24399611 Msa0015070:intron 20.0%
!! TAAAGACTAGTAAAAAAAGA+TGG - chr1_1:24399732-24399751 Msa0015070:intron 20.0%
!! AAAGACTAGTAAAAAAAGAT+GGG - chr1_1:24399733-24399752 Msa0015070:intron 20.0%
!! GAATGAAATAACTTCTATTA+AGG + chr1_1:24400162-24400181 None:intergenic 20.0%
!!! GTTGATTTTTGTATTTGTTT+TGG - chr1_1:24400876-24400895 Msa0015070:intron 20.0%
!! TTTGGGTAAAAATTAAGAAA+TGG + chr1_1:24401149-24401168 None:intergenic 20.0%
!! TCAAATTATTTGTCTACTTA+TGG - chr1_1:24401190-24401209 Msa0015070:intron 20.0%
! TTACACTTTCTACATATCAA+TGG - chr1_1:24398575-24398594 Msa0015070:three_prime_UTR 25.0%
! TACACTTTCTACATATCAAT+GGG - chr1_1:24398576-24398595 Msa0015070:three_prime_UTR 25.0%
! AGATTTAATTACAGCAGTAA+TGG - chr1_1:24398861-24398880 Msa0015070:CDS 25.0%
! CTTAGAAATGAAGGAATTAT+GGG + chr1_1:24398973-24398992 None:intergenic 25.0%
! AAAACAAAGCTTAGAAATGA+AGG + chr1_1:24398982-24399001 None:intergenic 25.0%
!! TGTACCAAAAACATTTTTCA+GGG + chr1_1:24399201-24399220 None:intergenic 25.0%
!! TTGTACCAAAAACATTTTTC+AGG + chr1_1:24399202-24399221 None:intergenic 25.0%
! GTAACTAACAATCCAAATAA+AGG + chr1_1:24399246-24399265 None:intergenic 25.0%
! TATTTCCTTGTCACATTTAA+TGG - chr1_1:24399284-24399303 Msa0015070:CDS 25.0%
!! TTTTACATGGAACGAATTAA+TGG + chr1_1:24399356-24399375 None:intergenic 25.0%
! GGGAATATAAATTTAGTAGT+TGG - chr1_1:24399663-24399682 Msa0015070:intron 25.0%
! GAAAAATCATACAACAAACA+AGG + chr1_1:24399712-24399731 None:intergenic 25.0%
! AAGACTAGTAAAAAAAGATG+GGG - chr1_1:24399734-24399753 Msa0015070:intron 25.0%
!! CATTAGAAGTGTAATAATGA+TGG + chr1_1:24399834-24399853 None:intergenic 25.0%
! AAAAGAATAAGTCTACATCA+AGG + chr1_1:24399858-24399877 None:intergenic 25.0%
!!! GTATTGTACTTTTGTTTTCT+TGG - chr1_1:24399927-24399946 Msa0015070:CDS 25.0%
! TTTGCAGATATGGAATAATT+TGG - chr1_1:24400224-24400243 Msa0015070:intron 25.0%
! AACAAAGTAAATAAAGACTG+CGG + chr1_1:24400403-24400422 None:intergenic 25.0%
! TAGGAAATTAATTGAAGCAA+TGG + chr1_1:24400469-24400488 None:intergenic 25.0%
! GTTAAGTTCAAAGTAATTGT+AGG + chr1_1:24400488-24400507 None:intergenic 25.0%
! AATATTGAAATTGTTAGGCA+AGG - chr1_1:24400549-24400568 Msa0015070:intron 25.0%
!!! AAAGAATGCAATCACTTTTA+CGG - chr1_1:24400660-24400679 Msa0015070:intron 25.0%
! CTATAATTACACATACATAG+AGG + chr1_1:24400757-24400776 None:intergenic 25.0%
!! TTTTACAAATGATCGTATAC+AGG - chr1_1:24401027-24401046 Msa0015070:intron 25.0%
! TTTACAAATGATCGTATACA+GGG - chr1_1:24401028-24401047 Msa0015070:intron 25.0%
! TTCTCTGCAATGAAATATAA+TGG + chr1_1:24401219-24401238 None:intergenic 25.0%
! TATATTTCATTGCAGAGAAA+TGG - chr1_1:24401220-24401239 Msa0015070:intron 25.0%
! TAGGATTGTTGAAATTGATT+CGG - chr1_1:24401360-24401379 Msa0015070:intron 25.0%
! TTCTGACTGTAATAATAATC+AGG + chr1_1:24401439-24401458 None:intergenic 25.0%
! GAATCAAAATCTCATCAATT+TGG - chr1_1:24401475-24401494 Msa0015070:intron 25.0%
AAAATAGAGTGAGAACTAGA+AGG + chr1_1:24398556-24398575 None:intergenic 30.0%
GTAATTAAATCTGACAACCT+CGG + chr1_1:24398853-24398872 None:intergenic 30.0%
GCTTAGAAATGAAGGAATTA+TGG + chr1_1:24398974-24398993 None:intergenic 30.0%
! TTTATTGGTGGGTAAACTTA+GGG + chr1_1:24399068-24399087 None:intergenic 30.0%
! ATTTATTGGTGGGTAAACTT+AGG + chr1_1:24399069-24399088 None:intergenic 30.0%
! GTTACCCTGAAAAATGTTTT+TGG - chr1_1:24399194-24399213 Msa0015070:CDS 30.0%
!! GGTGTTATTGAATGTTTGAT+AGG - chr1_1:24399507-24399526 Msa0015070:CDS 30.0%
!!! AAGGACGGAGAATTTTTTAT+GGG + chr1_1:24399564-24399583 None:intergenic 30.0%
!!! AAAGGACGGAGAATTTTTTA+TGG + chr1_1:24399565-24399584 None:intergenic 30.0%
TTATATTCCCTGTAGATTCA+GGG + chr1_1:24399653-24399672 None:intergenic 30.0%
TTTATATTCCCTGTAGATTC+AGG + chr1_1:24399654-24399673 None:intergenic 30.0%
ATAAATTTAGTAGTTGGCGT+AGG - chr1_1:24399669-24399688 Msa0015070:intron 30.0%
!!! GTGTTTTGATTTGCAATTTC+TGG - chr1_1:24399793-24399812 Msa0015070:intron 30.0%
!!! TTTTGATTTGCAATTTCTGG+TGG - chr1_1:24399796-24399815 Msa0015070:intron 30.0%
AAGTGTAATAATGATGGTCA+AGG + chr1_1:24399828-24399847 None:intergenic 30.0%
!!! TTGCTCAAGTTTTGATTTTG+TGG - chr1_1:24399896-24399915 Msa0015070:CDS 30.0%
!!! TGCTCAAGTTTTGATTTTGT+GGG - chr1_1:24399897-24399916 Msa0015070:CDS 30.0%
! TTGTTTTCTTGGCTTATACT+TGG - chr1_1:24399938-24399957 Msa0015070:CDS 30.0%
! TGTTTTCTTGGCTTATACTT+GGG - chr1_1:24399939-24399958 Msa0015070:CDS 30.0%
CTTGTATAGGAAACATCTTA+GGG + chr1_1:24400362-24400381 None:intergenic 30.0%
TCTTGTATAGGAAACATCTT+AGG + chr1_1:24400363-24400382 None:intergenic 30.0%
GGTATAACAGAATCTTGTAT+AGG + chr1_1:24400375-24400394 None:intergenic 30.0%
TAAATAAAGACTGCGGATAT+TGG + chr1_1:24400396-24400415 None:intergenic 30.0%
GTTATTTACAGAATGTAGTG+TGG - chr1_1:24400420-24400439 Msa0015070:intron 30.0%
TCAGTATCTCAAACATAGTA+AGG + chr1_1:24400510-24400529 None:intergenic 30.0%
!! AAGAATGCAATCACTTTTAC+GGG - chr1_1:24400661-24400680 Msa0015070:intron 30.0%
TAATTACACATACATAGAGG+TGG + chr1_1:24400754-24400773 None:intergenic 30.0%
TGATGAATCACAGAAAAAAG+AGG + chr1_1:24400789-24400808 None:intergenic 30.0%
ACATCAACTATGCAGTTAAA+AGG + chr1_1:24400817-24400836 None:intergenic 30.0%
! TTTAACTGCATAGTTGATGT+AGG - chr1_1:24400817-24400836 Msa0015070:intron 30.0%
TAGATCAAAGAACATGATGT+TGG + chr1_1:24400997-24401016 None:intergenic 30.0%
CACTAATAAGAACATATAGC+AGG - chr1_1:24401320-24401339 Msa0015070:intron 30.0%
! AGGATTGTTGAAATTGATTC+GGG - chr1_1:24401361-24401380 Msa0015070:intron 30.0%
ATAATAATCAGGATCACTTG+TGG + chr1_1:24401428-24401447 None:intergenic 30.0%
!!! AGATTTTGATTCCTTTGAAG+GGG + chr1_1:24401467-24401486 None:intergenic 30.0%
!!! GAGATTTTGATTCCTTTGAA+GGG + chr1_1:24401468-24401487 None:intergenic 30.0%
!!! TGAGATTTTGATTCCTTTGA+AGG + chr1_1:24401469-24401488 None:intergenic 30.0%
AGAAATCGAGTTCATCAAAT+AGG - chr1_1:24401779-24401798 Msa0015070:CDS 30.0%
CATTTATCTTGCTAACTAAC+TGG - chr1_1:24402017-24402036 Msa0015070:five_prime_UTR 30.0%
! ACTAACTGGTTGTAATTTGT+TGG - chr1_1:24402031-24402050 Msa0015070:five_prime_UTR 30.0%
!! CTAACTGGTTGTAATTTGTT+GGG - chr1_1:24402032-24402051 Msa0015070:five_prime_UTR 30.0%
AGTGAGTGAAAGAAGAAAGA+GGG + chr1_1:24398487-24398506 None:intergenic 35.0%
!!! CAGTTTTTTTGAGACCAAGA+AGG + chr1_1:24398626-24398645 None:intergenic 35.0%
GGTCTCAAAAAAACTGAACA+CGG - chr1_1:24398630-24398649 Msa0015070:three_prime_UTR 35.0%
TTGTTATGGACATGTTCTGT+TGG + chr1_1:24398756-24398775 None:intergenic 35.0%
!! AGCATTTTGAGCATTTGCTA+CGG + chr1_1:24398829-24398848 None:intergenic 35.0%
TTTATGTCGTCGTATTGCTA+TGG - chr1_1:24399172-24399191 Msa0015070:CDS 35.0%
TCGATCCATTAAATGTGACA+AGG + chr1_1:24399292-24399311 None:intergenic 35.0%
! CACATTTAATGGATCGATGA+TGG - chr1_1:24399295-24399314 Msa0015070:CDS 35.0%
ATTAATGGCTAGCACAATAG+AGG + chr1_1:24399341-24399360 None:intergenic 35.0%
AGAGATTTCACTCAACTTCT+AGG + chr1_1:24399416-24399435 None:intergenic 35.0%
AATGTGGAATTTGTCAACGA+AGG - chr1_1:24399482-24399501 Msa0015070:CDS 35.0%
GTAGTAGAAGAATAGAACCA+TGG + chr1_1:24399536-24399555 None:intergenic 35.0%
GTTCTATTCTTCTACTACCA+TGG - chr1_1:24399538-24399557 Msa0015070:intron 35.0%
TATATTCCCTGTAGATTCAG+GGG + chr1_1:24399652-24399671 None:intergenic 35.0%
!!! GCTCAAGTTTTGATTTTGTG+GGG - chr1_1:24399898-24399917 Msa0015070:CDS 35.0%
TTTGACAACAAAAGAGAGCA+GGG + chr1_1:24400114-24400133 None:intergenic 35.0%
! GCACTTTCATTTTGCAGATA+TGG - chr1_1:24400214-24400233 Msa0015070:intron 35.0%
TTGAAATTGTTAGGCAAGGA+AGG - chr1_1:24400553-24400572 Msa0015070:intron 35.0%
ATTCAAATGTGACGTTTGCA+TGG + chr1_1:24400714-24400733 None:intergenic 35.0%
! TAGTTGATGTAGGAGTATGA+AGG - chr1_1:24400827-24400846 Msa0015070:intron 35.0%
!!! TCAGATTTTTCTGGTGTTAC+TGG + chr1_1:24401055-24401074 None:intergenic 35.0%
ACACTCAATGCACATTGTTT+GGG + chr1_1:24401166-24401185 None:intergenic 35.0%
TACACTCAATGCACATTGTT+TGG + chr1_1:24401167-24401186 None:intergenic 35.0%
ATCAGTTAGACGAACAATCA+TGG - chr1_1:24401284-24401303 Msa0015070:intron 35.0%
!! CCACTTCGTTAAGTTTTAGT+GGG + chr1_1:24401537-24401556 None:intergenic 35.0%
!! TCCACTTCGTTAAGTTTTAG+TGG + chr1_1:24401538-24401557 None:intergenic 35.0%
GTTGCAGATGATAAAAGTTG+AGG + chr1_1:24401592-24401611 None:intergenic 35.0%
TCTGCAACTTCAAAAGATGA+TGG - chr1_1:24401604-24401623 Msa0015070:intron 35.0%
TGCACTCATAGATCTAACTT+TGG + chr1_1:24401737-24401756 None:intergenic 35.0%
!! TCATATTGAGGCCTTTGTTT+TGG + chr1_1:24401760-24401779 None:intergenic 35.0%
GAACTCGATTTCTCATATTG+AGG + chr1_1:24401772-24401791 None:intergenic 35.0%
TCAAATAGGTACTCACTCAA+TGG - chr1_1:24401793-24401812 Msa0015070:CDS 35.0%
CATCAATATCTATACCCTAC+AGG + chr1_1:24401922-24401941 None:intergenic 35.0%
GTTGTGAAACTTCATCTTTG+TGG - chr1_1:24402054-24402073 Msa0015070:five_prime_UTR 35.0%
!!! GAAGAAAGAGGGTCTTGTTT+TGG + chr1_1:24398476-24398495 None:intergenic 40.0%
GAGTGAGTGAAAGAAGAAAG+AGG + chr1_1:24398488-24398507 None:intergenic 40.0%
AGTGAGATGAATGAGAGGAT+GGG + chr1_1:24398523-24398542 None:intergenic 40.0%
AAGAGAGTGAGATGAATGAG+AGG + chr1_1:24398528-24398547 None:intergenic 40.0%
TAGAGTGAGAACTAGAAGGA+AGG + chr1_1:24398552-24398571 None:intergenic 40.0%
!! CAATGGGAAAAGCATCAAGA+TGG - chr1_1:24398592-24398611 Msa0015070:three_prime_UTR 40.0%
! AAAGCATCAAGATGGTTTCG+TGG - chr1_1:24398600-24398619 Msa0015070:three_prime_UTR 40.0%
CATCTACGTTTCTCTTTAGG+TGG + chr1_1:24398675-24398694 None:intergenic 40.0%
CACCTAAAGAGAAACGTAGA+TGG - chr1_1:24398673-24398692 Msa0015070:CDS 40.0%
CTCCATCTACGTTTCTCTTT+AGG + chr1_1:24398678-24398697 None:intergenic 40.0%
ACATGTCCATAACAACAGAC+AGG - chr1_1:24398761-24398780 Msa0015070:CDS 40.0%
AACCAAACTTCCACGAAAAG+CGG + chr1_1:24398931-24398950 None:intergenic 40.0%
TGGGTAAACTTAGGGATTAG+TGG + chr1_1:24399060-24399079 None:intergenic 40.0%
TGGAATTTGTCAACGAAGGT+AGG - chr1_1:24399486-24399505 Msa0015070:CDS 40.0%
GTAGAAGAATAGAACCATGG+TGG + chr1_1:24399533-24399552 None:intergenic 40.0%
!!! GGAGAATTTTTTATGGGCCA+TGG + chr1_1:24399558-24399577 None:intergenic 40.0%
!! GACATTCAACTTTGGCCTTT+TGG - chr1_1:24399600-24399619 Msa0015070:intron 40.0%
!! AACTTTGGCCTTTTGGTTGT+GGG - chr1_1:24399607-24399626 Msa0015070:intron 40.0%
GTAATAATGATGGTCAAGGC+AGG + chr1_1:24399824-24399843 None:intergenic 40.0%
TTGACAACAAAAGAGAGCAG+GGG + chr1_1:24400113-24400132 None:intergenic 40.0%
CTTTGACAACAAAAGAGAGC+AGG + chr1_1:24400115-24400134 None:intergenic 40.0%
GAACATGATGTTGGCAGTAT+TGG + chr1_1:24400988-24401007 None:intergenic 40.0%
! ACAGGGCTTTCAGATTTTTC+TGG + chr1_1:24401064-24401083 None:intergenic 40.0%
TCATGCTCCTAGATCTAACA+GGG + chr1_1:24401081-24401100 None:intergenic 40.0%
TTCATGCTCCTAGATCTAAC+AGG + chr1_1:24401082-24401101 None:intergenic 40.0%
ATGAAATCTGAGCATTCACC+TGG - chr1_1:24401097-24401116 Msa0015070:intron 40.0%
CAAGAAAATACCTTGAGTCC+AGG + chr1_1:24401118-24401137 None:intergenic 40.0%
TCCAAATCTTGTCTCTCCAA+CGG - chr1_1:24401244-24401263 Msa0015070:intron 40.0%
GGAGTGACGAAAAAAGTGAT+AGG - chr1_1:24401341-24401360 Msa0015070:intron 40.0%
GATCACTTGTGGAGTAAAAG+AGG + chr1_1:24401417-24401436 None:intergenic 40.0%
TCAGAATTTGACCCCTTCAA+AGG - chr1_1:24401453-24401472 Msa0015070:intron 40.0%
TGGTCAAAGTGTATCTTGTG+AGG - chr1_1:24401495-24401514 Msa0015070:intron 40.0%
CCCACTAAAACTTAACGAAG+TGG - chr1_1:24401534-24401553 Msa0015070:intron 40.0%
TCGCTTCTTGTAGGAGTAAA+AGG + chr1_1:24401643-24401662 None:intergenic 40.0%
TTTACTCCTACAAGAAGCGA+TGG - chr1_1:24401643-24401662 Msa0015070:intron 40.0%
CTGTATAAGCCATGTAGCTT+GGG + chr1_1:24401702-24401721 None:intergenic 40.0%
TCTGTATAAGCCATGTAGCT+TGG + chr1_1:24401703-24401722 None:intergenic 40.0%
CTATGAGTGCACCAAAACAA+AGG - chr1_1:24401746-24401765 Msa0015070:CDS 40.0%
CAATGCAGATGTTCTTTGTG+CGG + chr1_1:24401839-24401858 None:intergenic 40.0%
ATAAGCTTGGAATGCCTGTA+GGG - chr1_1:24401905-24401924 Msa0015070:CDS 40.0%
TGAGATGAATGAGAGGATGG+GGG + chr1_1:24398521-24398540 None:intergenic 45.0%
GTGAGATGAATGAGAGGATG+GGG + chr1_1:24398522-24398541 None:intergenic 45.0%
GAGTGAGATGAATGAGAGGA+TGG + chr1_1:24398524-24398543 None:intergenic 45.0%
AAATGCTCAAAATGCTGCCG+AGG - chr1_1:24398833-24398852 Msa0015070:CDS 45.0%
TAGCACAATAGAGGCTAAGC+TGG + chr1_1:24399332-24399351 None:intergenic 45.0%
GAATGTTTGATAGGCCACCA+TGG - chr1_1:24399516-24399535 Msa0015070:CDS 45.0%
!! CAACTTTGGCCTTTTGGTTG+TGG - chr1_1:24399606-24399625 Msa0015070:intron 45.0%
!! ACTTTGGCCTTTTGGTTGTG+GGG - chr1_1:24399608-24399627 Msa0015070:intron 45.0%
TAGTTGGCGTAGGTGAATGA+GGG - chr1_1:24399679-24399698 Msa0015070:intron 45.0%
TTCTTGGCTTATACTTGGGC+AGG - chr1_1:24399943-24399962 Msa0015070:CDS 45.0%
TCTTGGCTTATACTTGGGCA+GGG - chr1_1:24399944-24399963 Msa0015070:CDS 45.0%
TGACAACAAAAGAGAGCAGG+GGG + chr1_1:24400112-24400131 None:intergenic 45.0%
!! AAGGCACTGCGAGCATTAAA+AGG - chr1_1:24400572-24400591 Msa0015070:intron 45.0%
! AGGCACTGCGAGCATTAAAA+GGG - chr1_1:24400573-24400592 Msa0015070:intron 45.0%
CTGAAAGCCCTGTTAGATCT+AGG - chr1_1:24401071-24401090 Msa0015070:intron 45.0%
AAATCTTGTCTCTCCAACGG+CGG - chr1_1:24401247-24401266 Msa0015070:intron 45.0%
AGCCTCTAACGTAGCATCTT+GGG + chr1_1:24401669-24401688 None:intergenic 45.0%
TAGCCTCTAACGTAGCATCT+TGG + chr1_1:24401670-24401689 None:intergenic 45.0%
CTCTGATTACCCAAGCTACA+TGG - chr1_1:24401690-24401709 Msa0015070:CDS 45.0%
GGCTTATACAGAGTCAGCAA+AGG - chr1_1:24401711-24401730 Msa0015070:CDS 45.0%
CAAGCAAGCTTCACTAGCAA+AGG - chr1_1:24401859-24401878 Msa0015070:CDS 45.0%
TTCACTAGCAAAGGCTATCC+TGG - chr1_1:24401868-24401887 Msa0015070:CDS 45.0%
TCCAAGCTTATCCAAACGAC+CGG + chr1_1:24401896-24401915 None:intergenic 45.0%
GATAAGCTTGGAATGCCTGT+AGG - chr1_1:24401904-24401923 Msa0015070:CDS 45.0%
!!! ATTTTATTTAAAATAATGTT+TGG - chr1_1:24399093-24399112 Msa0015070:CDS 5.0%
GAGATGAATGAGAGGATGGG+GGG + chr1_1:24398520-24398539 None:intergenic 50.0%
AGATGGTTTCGTGGCCTTCT+TGG - chr1_1:24398609-24398628 Msa0015070:three_prime_UTR 50.0%
GTTCTGTTGGAAACGTGACG+TGG + chr1_1:24398743-24398762 None:intergenic 50.0%
CGATGGCCTGTCTGTTGTTA+TGG + chr1_1:24398770-24398789 None:intergenic 50.0%
ACAGCAGTAATGGCATCGTC+AGG - chr1_1:24398871-24398890 Msa0015070:CDS 50.0%
TCGTCAGGATACGCGAACAA+TGG - chr1_1:24398886-24398905 Msa0015070:CDS 50.0%
CGTCAGGATACGCGAACAAT+GGG - chr1_1:24398887-24398906 Msa0015070:CDS 50.0%
!!! AAGATCCAAGCCGCTTTTCG+TGG - chr1_1:24398918-24398937 Msa0015070:CDS 50.0%
AACTTCCACGAAAAGCGGCT+TGG + chr1_1:24398926-24398945 None:intergenic 50.0%
!!! AGCCGCTTTTCGTGGAAGTT+TGG - chr1_1:24398926-24398945 Msa0015070:CDS 50.0%
CCATTGTCCCCACAACCAAA+AGG + chr1_1:24399618-24399637 None:intergenic 50.0%
!! CCTTTTGGTTGTGGGGACAA+TGG - chr1_1:24399615-24399634 Msa0015070:intron 50.0%
GTAGTTGGCGTAGGTGAATG+AGG - chr1_1:24399678-24399697 Msa0015070:intron 50.0%
TGTCCCATGAGCTGAGTCTA+GGG - chr1_1:24399770-24399789 Msa0015070:intron 50.0%
TTGGGCAGGGAAGTTGTTGA+AGG - chr1_1:24399957-24399976 Msa0015070:CDS 50.0%
GCAGGGAAGTTGTTGAAGGA+AGG - chr1_1:24399961-24399980 Msa0015070:CDS 50.0%
ACAACAAAAGAGAGCAGGGG+GGG + chr1_1:24400110-24400129 None:intergenic 50.0%
GACAACAAAAGAGAGCAGGG+GGG + chr1_1:24400111-24400130 None:intergenic 50.0%
!! TAGTGTGGCTCTGAGTGCTA+CGG - chr1_1:24400435-24400454 Msa0015070:intron 50.0%
ACTGCGAGCATTAAAAGGGC+TGG - chr1_1:24400577-24400596 Msa0015070:intron 50.0%
!! AAACTCCAAGCACTGGTGAG+AGG - chr1_1:24400602-24400621 Msa0015070:intron 50.0%
TGGTGAGAGGTCACATTGAG+AGG - chr1_1:24400615-24400634 Msa0015070:intron 50.0%
AGAGGAAACGAACAGCAGAG+TGG - chr1_1:24400633-24400652 Msa0015070:intron 50.0%
!! GCAATCACTTTTACGGGCAC+AGG - chr1_1:24400667-24400686 Msa0015070:intron 50.0%
TGAGCATTCACCTGGACTCA+AGG - chr1_1:24401105-24401124 Msa0015070:intron 50.0%
GCCGTTGGAGAGACAAGATT+TGG + chr1_1:24401248-24401267 None:intergenic 50.0%
TTCTGATATGTTGCCGCCGT+TGG + chr1_1:24401263-24401282 None:intergenic 50.0%
CTCACTCAATGGACACGACA+TGG - chr1_1:24401804-24401823 Msa0015070:CDS 50.0%
TGGACACGACATGGCAAGAT+TGG - chr1_1:24401813-24401832 Msa0015070:CDS 50.0%
AGCAAAGGCTATCCTGGTTC+CGG - chr1_1:24401874-24401893 Msa0015070:CDS 50.0%
TTATCCAAACGACCGGAACC+AGG + chr1_1:24401889-24401908 None:intergenic 50.0%
TCCGGTCGTTTGGATAAGCT+TGG - chr1_1:24401892-24401911 Msa0015070:CDS 50.0%
!! AGAGGATGGGGGGCTTTGTT+TGG + chr1_1:24398510-24398529 None:intergenic 55.0%
CACCAGCCCCTGAATCTACA+GGG - chr1_1:24399643-24399662 Msa0015070:intron 55.0%
TTCCCTGTAGATTCAGGGGC+TGG + chr1_1:24399648-24399667 None:intergenic 55.0%
TTGGCGTAGGTGAATGAGGG+TGG - chr1_1:24399682-24399701 Msa0015070:intron 55.0%
TGGCGTAGGTGAATGAGGGT+GGG - chr1_1:24399683-24399702 Msa0015070:intron 55.0%
GTGTCCCATGAGCTGAGTCT+AGG - chr1_1:24399769-24399788 Msa0015070:intron 55.0%
GTCCCATGAGCTGAGTCTAG+GGG - chr1_1:24399771-24399790 Msa0015070:intron 55.0%
CACCCCTAGACTCAGCTCAT+GGG + chr1_1:24399776-24399795 None:intergenic 55.0%
ACACCCCTAGACTCAGCTCA+TGG + chr1_1:24399777-24399796 None:intergenic 55.0%
GCTGGTGAAACTCCAAGCAC+TGG - chr1_1:24400595-24400614 Msa0015070:intron 55.0%
TGTGACCTCTCACCAGTGCT+TGG + chr1_1:24400610-24400629 None:intergenic 55.0%
CTTGGGCCATCGCTTCTTGT+AGG + chr1_1:24401652-24401671 None:intergenic 55.0%
GGCCCAAGATGCTACGTTAG+AGG - chr1_1:24401664-24401683 Msa0015070:CDS 55.0%
CTATCCTGGTTCCGGTCGTT+TGG - chr1_1:24401882-24401901 Msa0015070:CDS 55.0%
CAACAGACAGGCCATCGCTG+TGG - chr1_1:24398773-24398792 Msa0015070:CDS 60.0%
! GTAGATTCAGGGGCTGGTGG+TGG + chr1_1:24399642-24399661 None:intergenic 60.0%
CCTGTAGATTCAGGGGCTGG+TGG + chr1_1:24399645-24399664 None:intergenic 60.0%
CCACCAGCCCCTGAATCTAC+AGG - chr1_1:24399642-24399661 Msa0015070:intron 60.0%
CGTAGGTGAATGAGGGTGGG+TGG - chr1_1:24399686-24399705 Msa0015070:intron 60.0%
CATCGCTGTGGCAGCTGCCA+CGG - chr1_1:24398785-24398804 Msa0015070:CDS 65.0%
CGTGGCAGCTGCCACAGCGA+TGG + chr1_1:24398787-24398806 None:intergenic 70.0%
TGTGGCAGCTGCCACGGCAG+CGG - chr1_1:24398791-24398810 Msa0015070:CDS 70.0%
AGCTGCCACGGCAGCGGCTG+CGG - chr1_1:24398797-24398816 Msa0015070:CDS 75.0%
AACCTCCGCAGCCGCTGCCG+TGG + chr1_1:24398805-24398824 None:intergenic 75.0%
! TGCCACGGCAGCGGCTGCGG+AGG - chr1_1:24398800-24398819 Msa0015070:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 24398473 24402123 24398473 ID=Msa0015070;Name=Msa0015070
chr1_1 mRNA 24398473 24402123 24398473 ID=Msa0015070-mRNA-1;Parent=Msa0015070;Name=Msa0015070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=121|1|1|1|1|1|4|184|443
chr1_1 exon 24398473 24399361 24398473 ID=Msa0015070-mRNA-1:exon:8382;Parent=Msa0015070-mRNA-1
chr1_1 exon 24399470 24399547 24399470 ID=Msa0015070-mRNA-1:exon:8381;Parent=Msa0015070-mRNA-1
chr1_1 exon 24399836 24400030 24399836 ID=Msa0015070-mRNA-1:exon:8380;Parent=Msa0015070-mRNA-1
chr1_1 exon 24401649 24402123 24401649 ID=Msa0015070-mRNA-1:exon:8379;Parent=Msa0015070-mRNA-1
chr1_1 five_prime_UTR 24402003 24402123 24402003 ID=Msa0015070-mRNA-1:five_prime_utr;Parent=Msa0015070-mRNA-1
chr1_1 CDS 24401649 24402002 24401649 ID=Msa0015070-mRNA-1:cds;Parent=Msa0015070-mRNA-1
chr1_1 CDS 24399836 24400030 24399836 ID=Msa0015070-mRNA-1:cds;Parent=Msa0015070-mRNA-1
chr1_1 CDS 24399470 24399547 24399470 ID=Msa0015070-mRNA-1:cds;Parent=Msa0015070-mRNA-1
chr1_1 CDS 24398657 24399361 24398657 ID=Msa0015070-mRNA-1:cds;Parent=Msa0015070-mRNA-1
chr1_1 three_prime_UTR 24398473 24398656 24398473 ID=Msa0015070-mRNA-1:three_prime_utr;Parent=Msa0015070-mRNA-1
Gene Sequence

>Msa0015070

ATGGGAAAAGCATCAAGATGGTTTCGTGGCCTTCTTGGTCTCAAAAAAACTGAACACGGTTCTTCTTCTGATCAAAAACCACCTAAAGAGAAACGTAGATGGAGTTTCGTAAAGTCATACAGAGAAGAACAACAACAACATAGCAGCCACGTCACGTTTCCAACAGAACATGTCCATAACAACAGACAGGCCATCGCTGTGGCAGCTGCCACGGCAGCGGCTGCGGAGGTTGCCGTAGCAAATGCTCAAAATGCTGCCGAGGTTGTCAGATTTAATTACAGCAGTAATGGCATCGTCAGGATACGCGAACAATGGGCTGCTGTTAAGATCCAAGCCGCTTTTCGTGGAAGTTTGGCAAGGAAGGCACTGCGAGCATTAAAAGGGCTGGTGAAACTCCAAGCACTGGTGAGAGGTCACATTGAGAGGAAACGAACAGCAGAGTGGCTCAAAAGAATGCAATCACTTTTACGGGCACAGGCACGATTTAATGCAGCACGCACCATGCAAACGTCACATTTGAATGCAAAATCATCTACTCTCCACCTCTATGGTCCAGTAACACCAGAAAAATCTGAAAGCCCTGTTAGATCTAGGAGCATGAAATCTGAGCATTCACCTGGACTCAAGAGAAATGGCTCCAAATCTTGTCTCTCCAACGGCGGCAACATATCAGAAAATCAGTTAGACGAACAATCATGGAATAGAGTAAGATCACTAATAAGAACATATAGCAGGAGTGACGAAAAAAGTGATAGGATTGTTGAAATTGATTCGGGAAAACAACACGTCAATGCAAAACGCAGAAACCTCTTTTACTCCACAAGTGATCCTGATTATTATTACAGTCAGAATTTGACCCCTTCAAAGGAATCAAAATCTCATCAATTTGGTCAAAGTGTATCTTGTGAGGTTCAATCTTATTACAACCCACTAAAACTTAACGAAGTGGAAGAGAACTCGTTTTGTACAGCAAACAATAGTCCTCAACTTTTATCATCTGCAACTTCAAAAGATGATGGTTACAATAGAAGTCCTTTTACTCCTACAAGAAGCGATGGCCCAAGATGCTACGTTAGAGGCTACTCTGATTACCCAAGCTACATGGCTTATACAGAGTCAGCAAAGGCCAAAGTTAGATCTATGAGTGCACCAAAACAAAGGCCTCAATATGAGAAATCGAGTTCATCAAATAGGTACTCACTCAATGGACACGACATGGCAAGATTGGCCGCACAAAGAACATCTGCATTGCAAGCAAGCTTCACTAGCAAAGGCTATCCTGGTTCCGGTCGTTTGGATAAGCTTGGAATGCCTGTAGGGTATAGATATTGA

Protein sequence

>Msa0015070

MGKASRWFRGLLGLKKTEHGSSSDQKPPKEKRRWSFVKSYREEQQQHSSHVTFPTEHVHNNRQAIAVAAATAAAAEVAVANAQNAAEVVRFNYSSNGIVRIREQWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKRMQSLLRAQARFNAARTMQTSHLNAKSSTLHLYGPVTPEKSESPVRSRSMKSEHSPGLKRNGSKSCLSNGGNISENQLDEQSWNRVRSLIRTYSRSDEKSDRIVEIDSGKQHVNAKRRNLFYSTSDPDYYYSQNLTPSKESKSHQFGQSVSCEVQSYYNPLKLNEVEENSFCTANNSPQLLSSATSKDDGYNRSPFTPTRSDGPRCYVRGYSDYPSYMAYTESAKAKVRSMSAPKQRPQYEKSSSSNRYSLNGHDMARLAAQRTSALQASFTSKGYPGSGRLDKLGMPVGYRY*