AlfalfaGEDB | Msa1104420

M. sativa cultivar zhongmu-4 / Msa1104420

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944
PFAM: PF13602.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104420	KEH22573.1	89.683	252	19	1	1	245	118	369	8.57e-156	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104420	sp\|Q9SV68\|QORH_ARATH	69.721	251	69	1	1	244	78	328	2.64e-117	341

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104420	A0A072U099	89.683	252	19	1	1	245	118	369	4.09e-156	447

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1104420	0.807848	4.135828e-50	-8.615850e-47
Msa0005690	Msa1104420	0.825565	4.373157e-54	-8.615850e-47
Msa0007160	Msa1104420	0.813061	3.097038e-51	-8.615850e-47
Msa0016830	Msa1104420	0.844043	9.649411e-59	-8.615850e-47
Msa0017420	Msa1104420	0.807644	4.571487e-50	-8.615850e-47
Msa0021710	Msa1104420	0.837186	6.029778e-57	-8.615850e-47
Msa0024330	Msa1104420	0.809021	2.324653e-50	-8.615850e-47
Msa0028410	Msa1104420	0.837036	6.586816e-57	-8.615850e-47
Msa0028450	Msa1104420	0.833581	4.912424e-56	-8.615850e-47
Msa0030740	Msa1104420	0.808328	3.269475e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104420	MtrunA17_Chr7g0235021	89.683	252	19	1	1	245	78	329	8.61e-160	446
Msa1104420	MtrunA17_Chr4g0015051	67.729	251	74	1	1	244	79	329	8.06e-118	339
Msa1104420	MtrunA17_Chr4g0014971	65.339	251	80	1	1	244	79	329	2.60e-112	325
Msa1104420	MtrunA17_Chr4g0014951	66.135	251	78	1	1	244	79	329	1.32e-110	321
Msa1104420	MtrunA17_Chr4g0014931	66.135	251	78	1	1	244	79	329	1.76e-110	321
Msa1104420	MtrunA17_Chr4g0015091	64.542	251	82	1	1	244	78	328	2.21e-110	320
Msa1104420	MtrunA17_Chr4g0014691	63.745	251	84	1	1	244	78	328	3.48e-106	310
Msa1104420	MtrunA17_Chr4g0014541	63.745	251	84	1	1	244	78	328	3.79e-106	310
Msa1104420	MtrunA17_Chr4g0015001	64.912	228	80	0	17	244	3	230	2.44e-103	299
Msa1104420	MtrunA17_Chr8g0365421	30.502	259	137	7	1	242	147	379	2.59e-20	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104420	AT4G13010.1	69.721	251	69	1	1	244	78	328	2.68e-118	341
Msa1104420	AT1G23740.1	33.624	229	122	7	18	242	179	381	1.16e-20	90.1
Msa1104420	AT1G49670.1	40.458	131	57	7	3	124	363	481	6.84e-14	71.2
Msa1104420	AT1G49670.2	34.932	146	67	7	3	124	363	504	1.90e-11	63.9

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Find 58 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCGACGGAAGTGGTGAG+CGG	0.589128	7_3:-41734734	Msa1104420:CDS
AACTGAAGATCCTTACCCTT+TGG	0.395500	7_3:+41734345	None:intergenic
ACAGCTGCATCAGGCGGTGT+AGG	0.577426	7_3:-41734696	Msa1104420:CDS
ACTCACGTAACAGCCACCTG+CGG	0.724816	7_3:-41734639	Msa1104420:CDS
AGAGCTGTTAGACCGGCGAC+AGG	0.591885	7_3:+41734786	None:intergenic
AGCCTTAGCTAGAGGAAATT+TGG	0.203726	7_3:+41734275	None:intergenic
AGCTGAGTTTGCTGTTCTTA+AGG	0.328687	7_3:-41734865	Msa1104420:CDS
AGGTACTGATGTAGCAGGAG+AGG	0.620397	7_3:-41735449	Msa1104420:five_prime_UTR
AGTATTGATGGTCATGCAAC+TGG	0.350063	7_3:-41734234	Msa1104420:CDS
ATAATAGGTACTGATGTAGC+AGG	0.548468	7_3:-41735454	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTAAATTGAAGACTGATAA+GGG	+	chr7_3:41734465-41734484	None:intergenic	30.0%
AGCTAAATTGAAGACTGATA+AGG	+	chr7_3:41734466-41734485	None:intergenic	30.0%
ATGGAAATTGTCAAAAGCTT+AGG	-	chr7_3:41735056-41735075	Msa1104420:intron	30.0%
GCTAAATTGAAGACTGATAA+GGG	+	chr7_3:41734465-41734484	None:intergenic	30.0%
AGCTAAATTGAAGACTGATA+AGG	+	chr7_3:41734466-41734485	None:intergenic	30.0%
ATGGAAATTGTCAAAAGCTT+AGG	-	chr7_3:41735056-41735075	Msa1104420:intron	30.0%
GGTGTTAAGAAGTTCAAAAC+TGG	-	chr7_3:41734253-41734272	Msa1104420:CDS	35.0%
AAAACTGGTGACAAAGTTGT+AGG	-	chr7_3:41734268-41734287	Msa1104420:CDS	35.0%
GAGTTTGATTCCTATGGATT+TGG	+	chr7_3:41734913-41734932	None:intergenic	35.0%
CTCTTCAATTCAACACCAAT+TGG	+	chr7_3:41735110-41735129	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	41734215	41735469	41734215	ID=Msa1104420;Name=Msa1104420
chr7_3	mRNA	41734215	41735469	41734215	ID=Msa1104420-mRNA-1;Parent=Msa1104420;Name=Msa1104420-mRNA-1;_AED=0.02;_eAED=0.05;_QI=23\|0\|0\|1\|0\|0\|2\|0\|245
chr7_3	exon	41735410	41735469	41735410	ID=Msa1104420-mRNA-1:exon:8516;Parent=Msa1104420-mRNA-1
chr7_3	exon	41734215	41734912	41734215	ID=Msa1104420-mRNA-1:exon:8515;Parent=Msa1104420-mRNA-1
chr7_3	five_prime_UTR	41735447	41735469	41735447	ID=Msa1104420-mRNA-1:five_prime_utr;Parent=Msa1104420-mRNA-1
chr7_3	CDS	41735410	41735446	41735410	ID=Msa1104420-mRNA-1:cds;Parent=Msa1104420-mRNA-1
chr7_3	CDS	41734215	41734912	41734215	ID=Msa1104420-mRNA-1:cds;Parent=Msa1104420-mRNA-1

Gene Sequence

>Msa1104420

ATGGAGGTTGGTAAAGGTGTTAAGAAGTTCAAAACTGTCATGAAATTTTATTATGGAGGACTAGCTGAGTTTGCTGTTCTTAAGGAGAGTCTTGCCGCTTCAATACCACCAGAAATCTCAGCATCCGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTCGACGGAAGTGGTGAGCGGAAAAACATTTTGATCACAGCTGCATCAGGCGGTGTAGGACACTATGCAGTTCAATTAGCAAAGCTAGGTAACACTCACGTAACAGCCACCTGCGGCGCTCGAAACATGGAAATTGTCAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAAACACCAATTGGTGTTGAATTGAAGAGTCCTTCTGGTAAGAAATATGATGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAATGGTAAGGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAAAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTTCTTGTTGATTTGATTAAGCAAGGAAAGATTAAAACAGTTATAGACTCCAAATTTCCTCTAGCTAAGGCTGAAGATGGTTGGTCTAAGAGTATTGATGGTCATGCAACTGGGAAGATCATTTTTGAGTTT

Protein sequence

>Msa1104420

MEVGKGVKKFKTVMKFYYGGLAEFAVLKESLAASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLVDLIKQGKIKTVIDSKFPLAKAEDGWSKSIDGHATGKIIFEF