AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135080 MtrunA17_Chr1g0205431 88.780 205 15 1 1 197 1 205 1.35e-129 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135080 AT1G05385.2 69.930 143 40 1 55 197 6 145 2.80e-65 197
Msa0135080 AT1G05385.1 69.930 143 40 1 55 197 60 199 5.62e-65 199

Find 83 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATGAACCAAAACTTATT+TGG 0.141055 1_3:+66628528 None:intergenic
AAATAGTGGTTTCAACATTT+TGG 0.171253 1_3:+66628770 None:intergenic
TCCCATGCTATCTGATTCTT+TGG 0.185657 1_3:+66628741 None:intergenic
GATCCATGATATACTAATTC+TGG 0.212831 1_3:+66628384 None:intergenic
CCCTGACTTTGTCTTCTCAT+TGG 0.218549 1_3:+66629254 None:intergenic
GAAAACGATGATGGGGTTAT+TGG 0.237764 1_3:-66629300 Msa0135080:CDS
GGTTAATACATTTATAATAA+AGG 0.242846 1_3:+66628487 None:intergenic
CCCATGCTATCTGATTCTTT+GGG 0.264272 1_3:+66628742 None:intergenic
ATCTGCAGTCCGTCTAAATT+TGG 0.273557 1_3:+66629143 None:intergenic
TTACAGTTTATCACCATTAA+TGG 0.273988 1_3:-66629355 Msa0135080:CDS
TCTTCGGCCCATGCCATTAA+TGG 0.281488 1_3:+66629342 None:intergenic
CCTGACTTTGTCTTCTCATT+GGG 0.285272 1_3:+66629255 None:intergenic
GAAATATATTTACCTAGTTT+TGG 0.304398 1_3:-66628654 Msa0135080:three_prime_UTR
CTAAATTTGGCATTGTCATC+AGG 0.305219 1_3:+66629156 None:intergenic
AAAACGATGATGGGGTTATT+GGG 0.311993 1_3:-66629299 Msa0135080:CDS
GTTAATACATTTATAATAAA+GGG 0.313470 1_3:+66628488 None:intergenic
ACCATGTTCCAAATAAGTTT+TGG 0.328063 1_3:-66628536 Msa0135080:three_prime_UTR
TTCTACAGTCCTCTCTGTCT+TGG 0.330880 1_3:+66628590 None:intergenic
TTCTTTGGGGTTTGAAATAG+TGG 0.335423 1_3:+66628756 None:intergenic
TTAACCCTAAGTTATATAAT+AGG 0.348572 1_3:-66628470 Msa0135080:three_prime_UTR
TCTACAGTCCTCTCTGTCTT+GGG 0.362912 1_3:+66628591 None:intergenic
GGTAAAAGCAGTAAGATCTT+TGG 0.364747 1_3:-66628898 Msa0135080:CDS
AATTAGCGTTGCCACTTCAT+TGG 0.375737 1_3:-66629394 Msa0135080:CDS
TGTGAATGTAGTCAACATTC+TGG 0.376130 1_3:-66630301 Msa0135080:five_prime_UTR
CCCAATGAGAAGACAAAGTC+AGG 0.396652 1_3:-66629255 Msa0135080:CDS
ATTGAAGAAGAGACTATTGC+TGG 0.398478 1_3:-66630335 Msa0135080:five_prime_UTR
TGCAGCAAAGGAGTCGATTC+GGG 0.402932 1_3:-66629121 Msa0135080:CDS
AATAAAGGGTGATGAGAAGT+TGG 0.413928 1_3:+66628502 None:intergenic
AAATTCCTATTATATAACTT+AGG 0.424490 1_3:+66628465 None:intergenic
GACTTAACTTCCGTCGGCAG+TGG 0.431839 1_3:+66628843 None:intergenic
ATGCAGCAAAGGAGTCGATT+CGG 0.434911 1_3:-66629122 Msa0135080:CDS
AATTCCTATTATATAACTTA+GGG 0.439036 1_3:+66628466 None:intergenic
GAGAACCTTACCTGTGCAAA+TGG 0.441168 1_3:+66630517 None:intergenic
GGAACACATAATAGCTGAAA+AGG 0.441979 1_3:+66630248 None:intergenic
TTTGTCAGCTGACTTCTCTT+CGG 0.445390 1_3:+66629326 None:intergenic
TTCGGGAGTATCTTGGTAGT+TGG 0.447521 1_3:-66629104 Msa0135080:CDS
AATTGAAAGGTTTCTGCGAC+TGG 0.455585 1_3:+66629413 None:intergenic
GCTGACTTTAAGTAAGCCTT+CGG 0.465034 1_3:+66629222 None:intergenic
TATCCAGAATTAGTATATCA+TGG 0.477536 1_3:-66628387 Msa0135080:three_prime_UTR
GCAGGAATCATACTTTGCTC+TGG 0.488174 1_3:-66628919 Msa0135080:intron
GGAAATTTCGTAAAAGAGAA+TGG 0.492580 1_3:-66630277 Msa0135080:exon
ACTTAACTTCCGTCGGCAGT+GGG 0.492647 1_3:+66628844 None:intergenic
ATACTTCTTGAGAAACAGTC+TGG 0.498665 1_3:+66629073 None:intergenic
TCCGTCGGCAGTGGGGCTGA+TGG 0.499406 1_3:+66628852 None:intergenic
TAACAGATAAACTGCAATCC+AGG 0.501310 1_3:-66629467 Msa0135080:intron
GACAAAGAGGAAAACGATGA+TGG 0.503005 1_3:-66629309 Msa0135080:CDS
CCCCAAAGAATCAGATAGCA+TGG 0.504637 1_3:-66628743 Msa0135080:three_prime_UTR
GGGAGTATCTTGGTAGTTGG+AGG 0.505346 1_3:-66629101 Msa0135080:CDS
CCATGCTATCTGATTCTTTG+GGG 0.513797 1_3:+66628743 None:intergenic
GGGATCAAATAACGATTTGA+CGG 0.517749 1_3:+66629275 None:intergenic
TCGGAGCCTTCCATTTGCAC+AGG 0.519668 1_3:-66630527 Msa0135080:intron
GAGTCGATTCGGGAGTATCT+TGG 0.529772 1_3:-66629111 Msa0135080:CDS
ACAAAGAGGAAAACGATGAT+GGG 0.531382 1_3:-66629308 Msa0135080:CDS
GTTTATCACCATTAATGGCA+TGG 0.531611 1_3:-66629350 Msa0135080:CDS
GATACCTTCAGAACTTGTGA+TGG 0.534488 1_3:+66630227 None:intergenic
TAATTACCCTTCACCTCCAC+CGG 0.538711 1_3:-66628627 Msa0135080:three_prime_UTR
TAAATTTGGCATTGTCATCA+GGG 0.539047 1_3:+66629157 None:intergenic
GGTAATTATCAACCAAAACT+AGG 0.545076 1_3:+66628642 None:intergenic
CTGCGACTGGAAGCTTCGAA+AGG 0.549449 1_3:+66629426 None:intergenic
TTTATCACCATTAATGGCAT+GGG 0.553461 1_3:-66629349 Msa0135080:CDS
GCCATCAGCCCCACTGCCGA+CGG 0.555502 1_3:-66628853 Msa0135080:CDS
ACCTTACCTGTGCAAATGGA+AGG 0.556743 1_3:+66630521 None:intergenic
TTACTTAAAGTCAGCAAGAG+AGG 0.560221 1_3:-66629214 Msa0135080:CDS
AAGTGGCAACGCTAATTGAA+AGG 0.563857 1_3:+66629400 None:intergenic
AGAGAAGTCAGCTGACAAAG+AGG 0.564571 1_3:-66629322 Msa0135080:CDS
TGTTATTGTAACCAATGAAG+TGG 0.566510 1_3:+66629383 None:intergenic
AAACGATGATGGGGTTATTG+GGG 0.568617 1_3:-66629298 Msa0135080:CDS
GGAGTATCTTGGTAGTTGGA+GGG 0.581542 1_3:-66629100 Msa0135080:CDS
ACCAAAACTTATTTGGAACA+TGG 0.587069 1_3:+66628535 None:intergenic
TGTTCCATCACAAGTTCTGA+AGG 0.589057 1_3:-66630231 Msa0135080:intron
TGGAACATGGTATGCAGAGT+CGG 0.595036 1_3:+66628548 None:intergenic
ACGGACTGCAGATGCAGCAA+AGG 0.596536 1_3:-66629133 Msa0135080:CDS
TCATTGGTTACAATAACATG+TGG 0.609111 1_3:-66629378 Msa0135080:CDS
AAGCTGTGCAGTATTAGACC+TGG 0.611400 1_3:+66629449 None:intergenic
CCCAAAGAATCAGATAGCAT+GGG 0.613209 1_3:-66628742 Msa0135080:three_prime_UTR
ATGACAATGCCAAATTTAGA+CGG 0.613681 1_3:-66629152 Msa0135080:CDS
ATTTCAGACTTAACTTCCGT+CGG 0.625733 1_3:+66628837 None:intergenic
CTTAACTTCCGTCGGCAGTG+GGG 0.642851 1_3:+66628845 None:intergenic
TGCAGAGTCGGTAAAACATG+AGG 0.648571 1_3:+66628560 None:intergenic
GAATGTAGTCAACATTCTGG+AGG 0.654559 1_3:-66630298 Msa0135080:five_prime_UTR
CAAAGAGGAAAACGATGATG+GGG 0.655727 1_3:-66629307 Msa0135080:CDS
GAGTATCTTGGTAGTTGGAG+GGG 0.662716 1_3:-66629099 Msa0135080:CDS
CCAATGAGAAGACAAAGTCA+GGG 0.666576 1_3:-66629254 Msa0135080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATACATTTATAATAAA+GGG + chr1_3:66630435-66630454 None:intergenic 10.0%
!! GTTAATACATTTATAATAAA+GGG + chr1_3:66630435-66630454 None:intergenic 10.0%
!! AAAAAAGAAAAAAAAGCTTA+TGG + chr1_3:66629186-66629205 None:intergenic 15.0%
!! AAATATATATAATCATGCTT+TGG - chr1_3:66629967-66629986 Msa0135080:intron 15.0%
!! GGTTAATACATTTATAATAA+AGG + chr1_3:66630436-66630455 None:intergenic 15.0%
!! AATTCCTATTATATAACTTA+GGG + chr1_3:66630457-66630476 None:intergenic 15.0%
!! AAATTCCTATTATATAACTT+AGG + chr1_3:66630458-66630477 None:intergenic 15.0%
!! AAAAAAGAAAAAAAAGCTTA+TGG + chr1_3:66629186-66629205 None:intergenic 15.0%
!! AAATATATATAATCATGCTT+TGG - chr1_3:66629967-66629986 Msa0135080:intron 15.0%
!! GGTTAATACATTTATAATAA+AGG + chr1_3:66630436-66630455 None:intergenic 15.0%
!! AATTCCTATTATATAACTTA+GGG + chr1_3:66630457-66630476 None:intergenic 15.0%
!! AAATTCCTATTATATAACTT+AGG + chr1_3:66630458-66630477 None:intergenic 15.0%
!! AAATTGAAGAAAGGAAATAA+AGG + chr1_3:66628445-66628464 None:intergenic 20.0%
!! AGTAATTGAAAATTGAAGAA+AGG + chr1_3:66628454-66628473 None:intergenic 20.0%
!!! TCAAAATGTTTGAAATAGTA+AGG + chr1_3:66628744-66628763 None:intergenic 20.0%
!!! TATTTCAAACATTTTGAGAT+TGG - chr1_3:66628747-66628766 Msa0135080:three_prime_UTR 20.0%
!! ATTAATCTATTTATCCAGAT+AGG - chr1_3:66628983-66629002 Msa0135080:intron 20.0%
!!! AAATTGTTTTAAGGTTTGTT+TGG - chr1_3:66629105-66629124 Msa0135080:CDS 20.0%
!! AAACTGTTATGTATAGTTTA+TGG + chr1_3:66629237-66629256 None:intergenic 20.0%
!!! TAAGCTGTTTTTTATATCAA+AGG + chr1_3:66629286-66629305 None:intergenic 20.0%
!!! GAAATATATTTACCTAGTTT+TGG - chr1_3:66630266-66630285 Msa0135080:exon 20.0%
!! TTAACCCTAAGTTATATAAT+AGG - chr1_3:66630450-66630469 Msa0135080:intron 20.0%
!! AAATTGAAGAAAGGAAATAA+AGG + chr1_3:66628445-66628464 None:intergenic 20.0%
!! AGTAATTGAAAATTGAAGAA+AGG + chr1_3:66628454-66628473 None:intergenic 20.0%
!!! TCAAAATGTTTGAAATAGTA+AGG + chr1_3:66628744-66628763 None:intergenic 20.0%
!!! TATTTCAAACATTTTGAGAT+TGG - chr1_3:66628747-66628766 Msa0135080:three_prime_UTR 20.0%
!! ATTAATCTATTTATCCAGAT+AGG - chr1_3:66628983-66629002 Msa0135080:intron 20.0%
!!! AAATTGTTTTAAGGTTTGTT+TGG - chr1_3:66629105-66629124 Msa0135080:CDS 20.0%
!! AAACTGTTATGTATAGTTTA+TGG + chr1_3:66629237-66629256 None:intergenic 20.0%
!!! TAAGCTGTTTTTTATATCAA+AGG + chr1_3:66629286-66629305 None:intergenic 20.0%
!!! GAAATATATTTACCTAGTTT+TGG - chr1_3:66630266-66630285 Msa0135080:exon 20.0%
!! TTAACCCTAAGTTATATAAT+AGG - chr1_3:66630450-66630469 Msa0135080:intron 20.0%
! ATCAAAAGATTTGACATTGA+AGG - chr1_3:66628713-66628732 Msa0135080:three_prime_UTR 25.0%
!! TTTTCATAAGCTATCTATCT+TGG + chr1_3:66628867-66628886 None:intergenic 25.0%
! CATATGCACTTATATGATAA+GGG - chr1_3:66629308-66629327 Msa0135080:CDS 25.0%
! ATATGCACTTATATGATAAG+GGG - chr1_3:66629309-66629328 Msa0135080:CDS 25.0%
! TTACAGTTTATCACCATTAA+TGG - chr1_3:66629565-66629584 Msa0135080:intron 25.0%
!! TAGCATATATGTTAGGATTT+TGG - chr1_3:66629914-66629933 Msa0135080:intron 25.0%
! TTTCTACAAAAATTCTTCAG+CGG + chr1_3:66630126-66630145 None:intergenic 25.0%
!! AAATAGTGGTTTCAACATTT+TGG + chr1_3:66630153-66630172 None:intergenic 25.0%
!!! CTTGGGTTTTTATTTTTATC+CGG + chr1_3:66630315-66630334 None:intergenic 25.0%
! ATCATGAACCAAAACTTATT+TGG + chr1_3:66630395-66630414 None:intergenic 25.0%
!!! TGACATTTTAGAGTGTAAAT+CGG + chr1_3:66630508-66630527 None:intergenic 25.0%
! TATCCAGAATTAGTATATCA+TGG - chr1_3:66630533-66630552 Msa0135080:five_prime_UTR 25.0%
! ATCAAAAGATTTGACATTGA+AGG - chr1_3:66628713-66628732 Msa0135080:three_prime_UTR 25.0%
!! TTTTCATAAGCTATCTATCT+TGG + chr1_3:66628867-66628886 None:intergenic 25.0%
! CATATGCACTTATATGATAA+GGG - chr1_3:66629308-66629327 Msa0135080:CDS 25.0%
! ATATGCACTTATATGATAAG+GGG - chr1_3:66629309-66629328 Msa0135080:CDS 25.0%
! TTACAGTTTATCACCATTAA+TGG - chr1_3:66629565-66629584 Msa0135080:intron 25.0%
!! TAGCATATATGTTAGGATTT+TGG - chr1_3:66629914-66629933 Msa0135080:intron 25.0%
! TTTCTACAAAAATTCTTCAG+CGG + chr1_3:66630126-66630145 None:intergenic 25.0%
!! AAATAGTGGTTTCAACATTT+TGG + chr1_3:66630153-66630172 None:intergenic 25.0%
!!! CTTGGGTTTTTATTTTTATC+CGG + chr1_3:66630315-66630334 None:intergenic 25.0%
! ATCATGAACCAAAACTTATT+TGG + chr1_3:66630395-66630414 None:intergenic 25.0%
!!! TGACATTTTAGAGTGTAAAT+CGG + chr1_3:66630508-66630527 None:intergenic 25.0%
! TATCCAGAATTAGTATATCA+TGG - chr1_3:66630533-66630552 Msa0135080:five_prime_UTR 25.0%
! CATATACGCAATACTCTTTT+GGG + chr1_3:66628495-66628514 None:intergenic 30.0%
! TCATATACGCAATACTCTTT+TGG + chr1_3:66628496-66628515 None:intergenic 30.0%
GGAAATTTCGTAAAAGAGAA+TGG - chr1_3:66628643-66628662 Msa0135080:three_prime_UTR 30.0%
ATTGAATGATACAACCTATC+TGG + chr1_3:66629000-66629019 None:intergenic 30.0%
GGTTGTATCATTCAATTGAA+AGG - chr1_3:66629004-66629023 Msa0135080:intron 30.0%
!! TTGCACTATAGTATTGATAG+TGG - chr1_3:66629077-66629096 Msa0135080:CDS 30.0%
TGCTTATTATGAGAGAACTA+TGG - chr1_3:66629141-66629160 Msa0135080:CDS 30.0%
GCATATGCACTTATATGATA+AGG - chr1_3:66629307-66629326 Msa0135080:CDS 30.0%
! GTAAGTATTGTATGACACAA+AGG + chr1_3:66629376-66629395 None:intergenic 30.0%
GTCATACAATACTTACAACA+TGG - chr1_3:66629380-66629399 Msa0135080:CDS 30.0%
ATGGTAAACTAAGTAAGAGT+AGG - chr1_3:66629399-66629418 Msa0135080:CDS 30.0%
GAAAAGCTGTCAATAAATGA+AGG + chr1_3:66629426-66629445 None:intergenic 30.0%
TGTTATTGTAACCAATGAAG+TGG + chr1_3:66629540-66629559 None:intergenic 30.0%
! TCATTGGTTACAATAACATG+TGG - chr1_3:66629542-66629561 Msa0135080:intron 30.0%
TTTATCACCATTAATGGCAT+GGG - chr1_3:66629571-66629590 Msa0135080:intron 30.0%
TAAATTTGGCATTGTCATCA+GGG + chr1_3:66629766-66629785 None:intergenic 30.0%
ATGACAATGCCAAATTTAGA+CGG - chr1_3:66629768-66629787 Msa0135080:intron 30.0%
CTTTGACTAGCATATATGTT+AGG - chr1_3:66629907-66629926 Msa0135080:intron 30.0%
CATTCACAAAAAGAAAAGAC+TGG + chr1_3:66629946-66629965 None:intergenic 30.0%
! TTTGGCAAACTTTTACTCAA+AGG - chr1_3:66630040-66630059 Msa0135080:intron 30.0%
GGTAATTATCAACCAAAACT+AGG + chr1_3:66630281-66630300 None:intergenic 30.0%
!!! TTTTTATTTTTATCCGGTGG+AGG + chr1_3:66630309-66630328 None:intergenic 30.0%
! ACCATGTTCCAAATAAGTTT+TGG - chr1_3:66630384-66630403 Msa0135080:intron 30.0%
! ACCAAAACTTATTTGGAACA+TGG + chr1_3:66630388-66630407 None:intergenic 30.0%
GATCCATGATATACTAATTC+TGG + chr1_3:66630539-66630558 None:intergenic 30.0%
! CATATACGCAATACTCTTTT+GGG + chr1_3:66628495-66628514 None:intergenic 30.0%
! TCATATACGCAATACTCTTT+TGG + chr1_3:66628496-66628515 None:intergenic 30.0%
GGAAATTTCGTAAAAGAGAA+TGG - chr1_3:66628643-66628662 Msa0135080:three_prime_UTR 30.0%
ATTGAATGATACAACCTATC+TGG + chr1_3:66629000-66629019 None:intergenic 30.0%
GGTTGTATCATTCAATTGAA+AGG - chr1_3:66629004-66629023 Msa0135080:intron 30.0%
!! TTGCACTATAGTATTGATAG+TGG - chr1_3:66629077-66629096 Msa0135080:CDS 30.0%
TGCTTATTATGAGAGAACTA+TGG - chr1_3:66629141-66629160 Msa0135080:CDS 30.0%
GCATATGCACTTATATGATA+AGG - chr1_3:66629307-66629326 Msa0135080:CDS 30.0%
! GTAAGTATTGTATGACACAA+AGG + chr1_3:66629376-66629395 None:intergenic 30.0%
GTCATACAATACTTACAACA+TGG - chr1_3:66629380-66629399 Msa0135080:CDS 30.0%
ATGGTAAACTAAGTAAGAGT+AGG - chr1_3:66629399-66629418 Msa0135080:CDS 30.0%
GAAAAGCTGTCAATAAATGA+AGG + chr1_3:66629426-66629445 None:intergenic 30.0%
TGTTATTGTAACCAATGAAG+TGG + chr1_3:66629540-66629559 None:intergenic 30.0%
! TCATTGGTTACAATAACATG+TGG - chr1_3:66629542-66629561 Msa0135080:intron 30.0%
TTTATCACCATTAATGGCAT+GGG - chr1_3:66629571-66629590 Msa0135080:intron 30.0%
TAAATTTGGCATTGTCATCA+GGG + chr1_3:66629766-66629785 None:intergenic 30.0%
ATGACAATGCCAAATTTAGA+CGG - chr1_3:66629768-66629787 Msa0135080:intron 30.0%
CTTTGACTAGCATATATGTT+AGG - chr1_3:66629907-66629926 Msa0135080:intron 30.0%
CATTCACAAAAAGAAAAGAC+TGG + chr1_3:66629946-66629965 None:intergenic 30.0%
! TTTGGCAAACTTTTACTCAA+AGG - chr1_3:66630040-66630059 Msa0135080:intron 30.0%
GGTAATTATCAACCAAAACT+AGG + chr1_3:66630281-66630300 None:intergenic 30.0%
!!! TTTTTATTTTTATCCGGTGG+AGG + chr1_3:66630309-66630328 None:intergenic 30.0%
! ACCATGTTCCAAATAAGTTT+TGG - chr1_3:66630384-66630403 Msa0135080:intron 30.0%
! ACCAAAACTTATTTGGAACA+TGG + chr1_3:66630388-66630407 None:intergenic 30.0%
GATCCATGATATACTAATTC+TGG + chr1_3:66630539-66630558 None:intergenic 30.0%
ATTGAAGAAGAGACTATTGC+TGG - chr1_3:66628585-66628604 Msa0135080:three_prime_UTR 35.0%
TGTGAATGTAGTCAACATTC+TGG - chr1_3:66628619-66628638 Msa0135080:three_prime_UTR 35.0%
GGAACACATAATAGCTGAAA+AGG + chr1_3:66628675-66628694 None:intergenic 35.0%
!! GTGGCTCGTAAATTGTTTTA+AGG - chr1_3:66629096-66629115 Msa0135080:CDS 35.0%
TAACAGATAAACTGCAATCC+AGG - chr1_3:66629453-66629472 Msa0135080:CDS 35.0%
GTTTATCACCATTAATGGCA+TGG - chr1_3:66629570-66629589 Msa0135080:intron 35.0%
ACAAAGAGGAAAACGATGAT+GGG - chr1_3:66629612-66629631 Msa0135080:intron 35.0%
!! AAAACGATGATGGGGTTATT+GGG - chr1_3:66629621-66629640 Msa0135080:intron 35.0%
GGGATCAAATAACGATTTGA+CGG + chr1_3:66629648-66629667 None:intergenic 35.0%
TTACTTAAAGTCAGCAAGAG+AGG - chr1_3:66629706-66629725 Msa0135080:intron 35.0%
CTAAATTTGGCATTGTCATC+AGG + chr1_3:66629767-66629786 None:intergenic 35.0%
ATACTTCTTGAGAAACAGTC+TGG + chr1_3:66629850-66629869 None:intergenic 35.0%
GGTAAAAGCAGTAAGATCTT+TGG - chr1_3:66630022-66630041 Msa0135080:intron 35.0%
! CAAACTTTTACTCAAAGGCA+GGG - chr1_3:66630045-66630064 Msa0135080:intron 35.0%
ATTTCAGACTTAACTTCCGT+CGG + chr1_3:66630086-66630105 None:intergenic 35.0%
!! TTCTTTGGGGTTTGAAATAG+TGG + chr1_3:66630167-66630186 None:intergenic 35.0%
!!! GGGTTTTTATTTTTATCCGG+TGG + chr1_3:66630312-66630331 None:intergenic 35.0%
AATAAAAACCCAAGACAGAG+AGG - chr1_3:66630321-66630340 Msa0135080:five_prime_UTR 35.0%
AATAAAGGGTGATGAGAAGT+TGG + chr1_3:66630421-66630440 None:intergenic 35.0%
ATTGAAGAAGAGACTATTGC+TGG - chr1_3:66628585-66628604 Msa0135080:three_prime_UTR 35.0%
TGTGAATGTAGTCAACATTC+TGG - chr1_3:66628619-66628638 Msa0135080:three_prime_UTR 35.0%
GGAACACATAATAGCTGAAA+AGG + chr1_3:66628675-66628694 None:intergenic 35.0%
!! GTGGCTCGTAAATTGTTTTA+AGG - chr1_3:66629096-66629115 Msa0135080:CDS 35.0%
TAACAGATAAACTGCAATCC+AGG - chr1_3:66629453-66629472 Msa0135080:CDS 35.0%
GTTTATCACCATTAATGGCA+TGG - chr1_3:66629570-66629589 Msa0135080:intron 35.0%
ACAAAGAGGAAAACGATGAT+GGG - chr1_3:66629612-66629631 Msa0135080:intron 35.0%
!! AAAACGATGATGGGGTTATT+GGG - chr1_3:66629621-66629640 Msa0135080:intron 35.0%
GGGATCAAATAACGATTTGA+CGG + chr1_3:66629648-66629667 None:intergenic 35.0%
TTACTTAAAGTCAGCAAGAG+AGG - chr1_3:66629706-66629725 Msa0135080:intron 35.0%
CTAAATTTGGCATTGTCATC+AGG + chr1_3:66629767-66629786 None:intergenic 35.0%
ATACTTCTTGAGAAACAGTC+TGG + chr1_3:66629850-66629869 None:intergenic 35.0%
GGTAAAAGCAGTAAGATCTT+TGG - chr1_3:66630022-66630041 Msa0135080:intron 35.0%
! CAAACTTTTACTCAAAGGCA+GGG - chr1_3:66630045-66630064 Msa0135080:intron 35.0%
ATTTCAGACTTAACTTCCGT+CGG + chr1_3:66630086-66630105 None:intergenic 35.0%
!! TTCTTTGGGGTTTGAAATAG+TGG + chr1_3:66630167-66630186 None:intergenic 35.0%
!!! GGGTTTTTATTTTTATCCGG+TGG + chr1_3:66630312-66630331 None:intergenic 35.0%
AATAAAAACCCAAGACAGAG+AGG - chr1_3:66630321-66630340 Msa0135080:five_prime_UTR 35.0%
AATAAAGGGTGATGAGAAGT+TGG + chr1_3:66630421-66630440 None:intergenic 35.0%
AGGAAATAAAGGCGAGGATA+TGG + chr1_3:66628434-66628453 None:intergenic 40.0%
GAAGAAAGGAAATAAAGGCG+AGG + chr1_3:66628440-66628459 None:intergenic 40.0%
GAATGTAGTCAACATTCTGG+AGG - chr1_3:66628622-66628641 Msa0135080:three_prime_UTR 40.0%
! TGTTCCATCACAAGTTCTGA+AGG - chr1_3:66628689-66628708 Msa0135080:three_prime_UTR 40.0%
GATACCTTCAGAACTTGTGA+TGG + chr1_3:66628696-66628715 None:intergenic 40.0%
TATGACACAAAGGCTCTGTT+TGG + chr1_3:66629366-66629385 None:intergenic 40.0%
AATTGAAAGGTTTCTGCGAC+TGG + chr1_3:66629510-66629529 None:intergenic 40.0%
AAGTGGCAACGCTAATTGAA+AGG + chr1_3:66629523-66629542 None:intergenic 40.0%
! AATTAGCGTTGCCACTTCAT+TGG - chr1_3:66629526-66629545 Msa0135080:intron 40.0%
! TTTGTCAGCTGACTTCTCTT+CGG + chr1_3:66629597-66629616 None:intergenic 40.0%
GACAAAGAGGAAAACGATGA+TGG - chr1_3:66629611-66629630 Msa0135080:intron 40.0%
CAAAGAGGAAAACGATGATG+GGG - chr1_3:66629613-66629632 Msa0135080:intron 40.0%
!! GAAAACGATGATGGGGTTAT+TGG - chr1_3:66629620-66629639 Msa0135080:intron 40.0%
!! AAACGATGATGGGGTTATTG+GGG - chr1_3:66629622-66629641 Msa0135080:intron 40.0%
CCTGACTTTGTCTTCTCATT+GGG + chr1_3:66629668-66629687 None:intergenic 40.0%
CCAATGAGAAGACAAAGTCA+GGG - chr1_3:66629666-66629685 Msa0135080:intron 40.0%
! GCTGACTTTAAGTAAGCCTT+CGG + chr1_3:66629701-66629720 None:intergenic 40.0%
ATCTGCAGTCCGTCTAAATT+TGG + chr1_3:66629780-66629799 None:intergenic 40.0%
GCAAAGTATGATTCCTGCAA+GGG + chr1_3:66629999-66630018 None:intergenic 40.0%
AGCAAAGTATGATTCCTGCA+AGG + chr1_3:66630000-66630019 None:intergenic 40.0%
! GCAAACTTTTACTCAAAGGC+AGG - chr1_3:66630044-66630063 Msa0135080:intron 40.0%
CCATGCTATCTGATTCTTTG+GGG + chr1_3:66630180-66630199 None:intergenic 40.0%
CCCATGCTATCTGATTCTTT+GGG + chr1_3:66630181-66630200 None:intergenic 40.0%
CCCAAAGAATCAGATAGCAT+GGG - chr1_3:66630178-66630197 Msa0135080:intron 40.0%
TCCCATGCTATCTGATTCTT+TGG + chr1_3:66630182-66630201 None:intergenic 40.0%
AGGAAATAAAGGCGAGGATA+TGG + chr1_3:66628434-66628453 None:intergenic 40.0%
GAAGAAAGGAAATAAAGGCG+AGG + chr1_3:66628440-66628459 None:intergenic 40.0%
GAATGTAGTCAACATTCTGG+AGG - chr1_3:66628622-66628641 Msa0135080:three_prime_UTR 40.0%
! TGTTCCATCACAAGTTCTGA+AGG - chr1_3:66628689-66628708 Msa0135080:three_prime_UTR 40.0%
GATACCTTCAGAACTTGTGA+TGG + chr1_3:66628696-66628715 None:intergenic 40.0%
TATGACACAAAGGCTCTGTT+TGG + chr1_3:66629366-66629385 None:intergenic 40.0%
AATTGAAAGGTTTCTGCGAC+TGG + chr1_3:66629510-66629529 None:intergenic 40.0%
AAGTGGCAACGCTAATTGAA+AGG + chr1_3:66629523-66629542 None:intergenic 40.0%
! AATTAGCGTTGCCACTTCAT+TGG - chr1_3:66629526-66629545 Msa0135080:intron 40.0%
! TTTGTCAGCTGACTTCTCTT+CGG + chr1_3:66629597-66629616 None:intergenic 40.0%
GACAAAGAGGAAAACGATGA+TGG - chr1_3:66629611-66629630 Msa0135080:intron 40.0%
CAAAGAGGAAAACGATGATG+GGG - chr1_3:66629613-66629632 Msa0135080:intron 40.0%
!! GAAAACGATGATGGGGTTAT+TGG - chr1_3:66629620-66629639 Msa0135080:intron 40.0%
!! AAACGATGATGGGGTTATTG+GGG - chr1_3:66629622-66629641 Msa0135080:intron 40.0%
CCTGACTTTGTCTTCTCATT+GGG + chr1_3:66629668-66629687 None:intergenic 40.0%
CCAATGAGAAGACAAAGTCA+GGG - chr1_3:66629666-66629685 Msa0135080:intron 40.0%
! GCTGACTTTAAGTAAGCCTT+CGG + chr1_3:66629701-66629720 None:intergenic 40.0%
ATCTGCAGTCCGTCTAAATT+TGG + chr1_3:66629780-66629799 None:intergenic 40.0%
GCAAAGTATGATTCCTGCAA+GGG + chr1_3:66629999-66630018 None:intergenic 40.0%
AGCAAAGTATGATTCCTGCA+AGG + chr1_3:66630000-66630019 None:intergenic 40.0%
! GCAAACTTTTACTCAAAGGC+AGG - chr1_3:66630044-66630063 Msa0135080:intron 40.0%
CCATGCTATCTGATTCTTTG+GGG + chr1_3:66630180-66630199 None:intergenic 40.0%
CCCATGCTATCTGATTCTTT+GGG + chr1_3:66630181-66630200 None:intergenic 40.0%
CCCAAAGAATCAGATAGCAT+GGG - chr1_3:66630178-66630197 Msa0135080:intron 40.0%
TCCCATGCTATCTGATTCTT+TGG + chr1_3:66630182-66630201 None:intergenic 40.0%
ACCTTACCTGTGCAAATGGA+AGG + chr1_3:66628402-66628421 None:intergenic 45.0%
GAGAACCTTACCTGTGCAAA+TGG + chr1_3:66628406-66628425 None:intergenic 45.0%
AAGCTGTGCAGTATTAGACC+TGG + chr1_3:66629474-66629493 None:intergenic 45.0%
AGAGAAGTCAGCTGACAAAG+AGG - chr1_3:66629598-66629617 Msa0135080:intron 45.0%
CCCAATGAGAAGACAAAGTC+AGG - chr1_3:66629665-66629684 Msa0135080:intron 45.0%
CCCTGACTTTGTCTTCTCAT+TGG + chr1_3:66629669-66629688 None:intergenic 45.0%
ATGCAGCAAAGGAGTCGATT+CGG - chr1_3:66629798-66629817 Msa0135080:intron 45.0%
!! TTCGGGAGTATCTTGGTAGT+TGG - chr1_3:66629816-66629835 Msa0135080:intron 45.0%
! GGAGTATCTTGGTAGTTGGA+GGG - chr1_3:66629820-66629839 Msa0135080:intron 45.0%
! GAGTATCTTGGTAGTTGGAG+GGG - chr1_3:66629821-66629840 Msa0135080:intron 45.0%
GCAGGAATCATACTTTGCTC+TGG - chr1_3:66630001-66630020 Msa0135080:intron 45.0%
CCCCAAAGAATCAGATAGCA+TGG - chr1_3:66630177-66630196 Msa0135080:intron 45.0%
TAATTACCCTTCACCTCCAC+CGG - chr1_3:66630293-66630312 Msa0135080:five_prime_UTR 45.0%
! TTTTATCCGGTGGAGGTGAA+GGG + chr1_3:66630302-66630321 None:intergenic 45.0%
! TTTTTATCCGGTGGAGGTGA+AGG + chr1_3:66630303-66630322 None:intergenic 45.0%
TCTACAGTCCTCTCTGTCTT+GGG + chr1_3:66630332-66630351 None:intergenic 45.0%
TTCTACAGTCCTCTCTGTCT+TGG + chr1_3:66630333-66630352 None:intergenic 45.0%
TGCAGAGTCGGTAAAACATG+AGG + chr1_3:66630363-66630382 None:intergenic 45.0%
TGGAACATGGTATGCAGAGT+CGG + chr1_3:66630375-66630394 None:intergenic 45.0%
ACCTTACCTGTGCAAATGGA+AGG + chr1_3:66628402-66628421 None:intergenic 45.0%
GAGAACCTTACCTGTGCAAA+TGG + chr1_3:66628406-66628425 None:intergenic 45.0%
AAGCTGTGCAGTATTAGACC+TGG + chr1_3:66629474-66629493 None:intergenic 45.0%
AGAGAAGTCAGCTGACAAAG+AGG - chr1_3:66629598-66629617 Msa0135080:intron 45.0%
CCCAATGAGAAGACAAAGTC+AGG - chr1_3:66629665-66629684 Msa0135080:intron 45.0%
CCCTGACTTTGTCTTCTCAT+TGG + chr1_3:66629669-66629688 None:intergenic 45.0%
ATGCAGCAAAGGAGTCGATT+CGG - chr1_3:66629798-66629817 Msa0135080:intron 45.0%
!! TTCGGGAGTATCTTGGTAGT+TGG - chr1_3:66629816-66629835 Msa0135080:intron 45.0%
! GGAGTATCTTGGTAGTTGGA+GGG - chr1_3:66629820-66629839 Msa0135080:intron 45.0%
! GAGTATCTTGGTAGTTGGAG+GGG - chr1_3:66629821-66629840 Msa0135080:intron 45.0%
GCAGGAATCATACTTTGCTC+TGG - chr1_3:66630001-66630020 Msa0135080:intron 45.0%
CCCCAAAGAATCAGATAGCA+TGG - chr1_3:66630177-66630196 Msa0135080:intron 45.0%
TAATTACCCTTCACCTCCAC+CGG - chr1_3:66630293-66630312 Msa0135080:five_prime_UTR 45.0%
! TTTTATCCGGTGGAGGTGAA+GGG + chr1_3:66630302-66630321 None:intergenic 45.0%
! TTTTTATCCGGTGGAGGTGA+AGG + chr1_3:66630303-66630322 None:intergenic 45.0%
TCTACAGTCCTCTCTGTCTT+GGG + chr1_3:66630332-66630351 None:intergenic 45.0%
TTCTACAGTCCTCTCTGTCT+TGG + chr1_3:66630333-66630352 None:intergenic 45.0%
TGCAGAGTCGGTAAAACATG+AGG + chr1_3:66630363-66630382 None:intergenic 45.0%
TGGAACATGGTATGCAGAGT+CGG + chr1_3:66630375-66630394 None:intergenic 45.0%
GCCTTCCATTTGCACAGGTA+AGG - chr1_3:66628398-66628417 Msa0135080:three_prime_UTR 50.0%
TCTTCGGCCCATGCCATTAA+TGG + chr1_3:66629581-66629600 None:intergenic 50.0%
! GTCAGGGAAAGTTTTGCCGA+AGG - chr1_3:66629682-66629701 Msa0135080:intron 50.0%
! TGCAGCAAAGGAGTCGATTC+GGG - chr1_3:66629799-66629818 Msa0135080:intron 50.0%
!! GAGTCGATTCGGGAGTATCT+TGG - chr1_3:66629809-66629828 Msa0135080:intron 50.0%
!! GGGAGTATCTTGGTAGTTGG+AGG - chr1_3:66629819-66629838 Msa0135080:intron 50.0%
! GCTTTGGATTGATCCCTTGC+AGG - chr1_3:66629983-66630002 Msa0135080:intron 50.0%
ACTTAACTTCCGTCGGCAGT+GGG + chr1_3:66630079-66630098 None:intergenic 50.0%
GCCTTCCATTTGCACAGGTA+AGG - chr1_3:66628398-66628417 Msa0135080:three_prime_UTR 50.0%
TCTTCGGCCCATGCCATTAA+TGG + chr1_3:66629581-66629600 None:intergenic 50.0%
! GTCAGGGAAAGTTTTGCCGA+AGG - chr1_3:66629682-66629701 Msa0135080:intron 50.0%
! TGCAGCAAAGGAGTCGATTC+GGG - chr1_3:66629799-66629818 Msa0135080:intron 50.0%
!! GAGTCGATTCGGGAGTATCT+TGG - chr1_3:66629809-66629828 Msa0135080:intron 50.0%
!! GGGAGTATCTTGGTAGTTGG+AGG - chr1_3:66629819-66629838 Msa0135080:intron 50.0%
! GCTTTGGATTGATCCCTTGC+AGG - chr1_3:66629983-66630002 Msa0135080:intron 50.0%
ACTTAACTTCCGTCGGCAGT+GGG + chr1_3:66630079-66630098 None:intergenic 50.0%
TCGGAGCCTTCCATTTGCAC+AGG - chr1_3:66628393-66628412 Msa0135080:three_prime_UTR 55.0%
CTGCGACTGGAAGCTTCGAA+AGG + chr1_3:66629497-66629516 None:intergenic 55.0%
! ACGGACTGCAGATGCAGCAA+AGG - chr1_3:66629787-66629806 Msa0135080:intron 55.0%
CTTAACTTCCGTCGGCAGTG+GGG + chr1_3:66630078-66630097 None:intergenic 55.0%
GACTTAACTTCCGTCGGCAG+TGG + chr1_3:66630080-66630099 None:intergenic 55.0%
TCGGAGCCTTCCATTTGCAC+AGG - chr1_3:66628393-66628412 Msa0135080:three_prime_UTR 55.0%
CTGCGACTGGAAGCTTCGAA+AGG + chr1_3:66629497-66629516 None:intergenic 55.0%
! ACGGACTGCAGATGCAGCAA+AGG - chr1_3:66629787-66629806 Msa0135080:intron 55.0%
CTTAACTTCCGTCGGCAGTG+GGG + chr1_3:66630078-66630097 None:intergenic 55.0%
GACTTAACTTCCGTCGGCAG+TGG + chr1_3:66630080-66630099 None:intergenic 55.0%
GCCATCAGCCCCACTGCCGA+CGG - chr1_3:66630067-66630086 Msa0135080:intron 70.0%
TCCGTCGGCAGTGGGGCTGA+TGG + chr1_3:66630071-66630090 None:intergenic 70.0%
GCCATCAGCCCCACTGCCGA+CGG - chr1_3:66630067-66630086 Msa0135080:intron 70.0%
TCCGTCGGCAGTGGGGCTGA+TGG + chr1_3:66630071-66630090 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66628379 66630563 66628379 ID=Msa0135080;Name=Msa0135080
chr1_3 mRNA 66628379 66630563 66628379 ID=Msa0135080-mRNA-1;Parent=Msa0135080;Name=Msa0135080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|0.66|0.5|4|421|197
chr1_3 exon 66628379 66628937 66628379 ID=Msa0135080-mRNA-1:exon:22802;Parent=Msa0135080-mRNA-1
chr1_3 exon 66629077 66629483 66629077 ID=Msa0135080-mRNA-1:exon:22801;Parent=Msa0135080-mRNA-1
chr1_3 exon 66630232 66630364 66630232 ID=Msa0135080-mRNA-1:exon:22800;Parent=Msa0135080-mRNA-1
chr1_3 exon 66630528 66630563 66630528 ID=Msa0135080-mRNA-1:exon:22799;Parent=Msa0135080-mRNA-1
chr1_3 five_prime_UTR 66630528 66630563 66630528 ID=Msa0135080-mRNA-1:five_prime_utr;Parent=Msa0135080-mRNA-1
chr1_3 five_prime_UTR 66630281 66630364 66630281 ID=Msa0135080-mRNA-1:five_prime_utr;Parent=Msa0135080-mRNA-1
chr1_3 CDS 66630232 66630280 66630232 ID=Msa0135080-mRNA-1:cds;Parent=Msa0135080-mRNA-1
chr1_3 CDS 66629077 66629483 66629077 ID=Msa0135080-mRNA-1:cds;Parent=Msa0135080-mRNA-1
chr1_3 CDS 66628800 66628937 66628800 ID=Msa0135080-mRNA-1:cds;Parent=Msa0135080-mRNA-1
chr1_3 three_prime_UTR 66628379 66628799 66628379 ID=Msa0135080-mRNA-1:three_prime_utr;Parent=Msa0135080-mRNA-1
Gene Sequence

>Msa0135080

ATGGCAGCTACCTTTTCAGCTATTATGTGTTCCATCACAAGTTCTGAAGATAAACTGCAATCCAGGTCTAATACTGCACAGCTTCCTTTCGAAGCTTCCAGTCGCAGAAACCTTTCAATTAGCGTTGCCACTTCATTGGTTACAATAACATGTGGTTACAGTTTATCACCATTAATGGCATGGGCCGAAGAGAAGTCAGCTGACAAAGAGGAAAACGATGATGGGGTTATTGGGGCCGTCAAATCGTTATTTGATCCCAATGAGAAGACAAAGTCAGGGAAAGTTTTGCCGAAGGCTTACTTAAAGTCAGCAAGAGAGGTAGTGAAGACACTGCGTGAATCTTTAAATGAAGACCCTGATGACAATGCCAAATTTAGACGGACTGCAGATGCAGCAAAGGAGTCGATTCGGGAGTATCTTGGTAGTTGGAGGGGAAACCAGACTGTTTCTCAAGAAGAATCATACTTTGCTCTGGTAAAAGCAGTAAGATCTTTGGCAAACTTTTACTCAAAGGCAGGGCCATCAGCCCCACTGCCGACGGAAGTTAAGTCTGAAATATTAAATTATCTGAATACCGCTGAAGAATTTTTGTAG

Protein sequence

>Msa0135080

MAATFSAIMCSITSSEDKLQSRSNTAQLPFEASSRRNLSISVATSLVTITCGYSLSPLMAWAEEKSADKEENDDGVIGAVKSLFDPNEKTKSGKVLPKAYLKSAREVVKTLRESLNEDPDDNAKFRRTADAAKESIREYLGSWRGNQTVSQEESYFALVKAVRSLANFYSKAGPSAPLPTEVKSEILNYLNTAEEFL*