AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015220 MtrunA17_Chr7g0228371 81.588 277 27 2 1 277 1 253 9.65e-159 441
Msa1015220 MtrunA17_Chr4g0003601 34.328 134 74 1 85 204 104 237 2.21e-19 85.1
Msa1015220 MtrunA17_Chr2g0332821 28.125 192 110 3 30 204 46 226 4.34e-16 75.9
Msa1015220 MtrunA17_Chr2g0332811 33.582 134 75 1 85 204 104 237 2.62e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015220 AT5G14660.1 60.465 258 75 3 19 276 42 272 4.29e-104 304
Msa1015220 AT5G14660.3 60.465 258 75 3 19 276 42 272 4.29e-104 304
Msa1015220 AT5G14660.2 60.465 258 75 3 19 276 42 272 4.29e-104 304
Msa1015220 AT1G15390.1 34.177 158 87 3 64 204 82 239 6.12e-20 87.4

Find 84 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTCCCTTCTGGTTT+TGG 0.217039 7_1:-27194694 Msa1015220:CDS
TCATCACTTAGCGGAATTTC+TGG 0.218170 7_1:-27194551 Msa1015220:three_prime_UTR
AGGAATTAATGTTCAACTTA+TGG 0.242265 7_1:-27198202 Msa1015220:CDS
CATCATTAACAAACTCAAAA+TGG 0.289466 7_1:+27194240 None:intergenic
TAGTATTCGTGGACAGTTAC+AGG 0.295514 7_1:-27196042 Msa1015220:intron
GCATCAATCTTCACAGATTC+TGG 0.306156 7_1:+27197381 None:intergenic
AGAGCAATCGTCATTTATTC+AGG 0.352566 7_1:-27194301 Msa1015220:three_prime_UTR
ATTGAGTATTTACTAACTCT+TGG 0.377226 7_1:+27198126 None:intergenic
ACATTACCCGTTCAAATTTG+TGG 0.389475 7_1:-27200798 Msa1015220:five_prime_UTR
TTTCCTCATACTTCATTTCA+AGG 0.393212 7_1:+27194761 None:intergenic
ATGACGATTGCTCTGATCAT+AGG 0.408582 7_1:+27194310 None:intergenic
TTGAGTATTTACTAACTCTT+GGG 0.412246 7_1:+27198127 None:intergenic
TTGTACAGAACTGATGGTAT+TGG 0.415936 7_1:-27198243 Msa1015220:intron
AATATCCAGACGCGAAGTTA+AGG 0.438986 7_1:-27200485 Msa1015220:CDS
TAACAAACTCAAAATGGAAA+TGG 0.439330 7_1:+27194246 None:intergenic
GTCAGGTGGAAGAAGCGGTT+TGG 0.443345 7_1:+27200698 None:intergenic
TTGAACATTAATTCCTACTT+GGG 0.445401 7_1:+27198209 None:intergenic
CCCGTTCAAATTTGTGGCGA+TGG 0.446829 7_1:-27200792 Msa1015220:exon
ATTTATTCAGGTTGCTCTGA+AGG 0.454735 7_1:-27194289 Msa1015220:three_prime_UTR
AACCCTCATTGAAGAGTGTT+CGG 0.455481 7_1:+27198100 None:intergenic
GTTGAACATTAATTCCTACT+TGG 0.459640 7_1:+27198208 None:intergenic
GCAAGAAGGAGCAACATCGC+AGG 0.463069 7_1:+27196791 None:intergenic
TTGGGAAATCATGATCTTCA+AGG 0.467476 7_1:-27194675 Msa1015220:intron
CAAGTGCAGAACAGCGGTGG+TGG 0.467569 7_1:+27200729 None:intergenic
GCAACATCGCAGGGAGGAGA+TGG 0.468111 7_1:+27196801 None:intergenic
GGACTTGGTGCGGCTGGAGG+AGG 0.469407 7_1:+27200670 None:intergenic
CCTTCACCACGTTCGCCTAC+CGG 0.476721 7_1:+27198171 None:intergenic
CAGTCATTCTCTCAAAGAAA+AGG 0.478584 7_1:+27196078 None:intergenic
TATAAGTTTGTAACTAGTAG+TGG 0.480122 7_1:-27194352 Msa1015220:three_prime_UTR
GAAGTTCTTGATAGTATTCG+TGG 0.485870 7_1:-27196053 Msa1015220:CDS
TCATGTTGAAATATCCGTGC+TGG 0.495228 7_1:+27197312 None:intergenic
CCATCGCCACAAATTTGAAC+GGG 0.497568 7_1:+27200792 None:intergenic
AGAACAAGAAAGGTCCCTTC+TGG 0.507355 7_1:-27194700 Msa1015220:CDS
GGCCCTTGAAATGAAGTATG+AGG 0.512810 7_1:-27194764 Msa1015220:CDS
TTTACGTCAGCATTAATGCC+GGG 0.513070 7_1:+27198066 None:intergenic
TTCCTCATACTTCATTTCAA+GGG 0.514907 7_1:+27194762 None:intergenic
AGAAAGTCGCAGAACAAGAA+AGG 0.519818 7_1:-27194710 Msa1015220:CDS
TTTATTCAGGTTGCTCTGAA+GGG 0.520496 7_1:-27194288 Msa1015220:three_prime_UTR
ACATGAATTTGACCATCTAC+AGG 0.526666 7_1:-27197295 Msa1015220:intron
GGCTGGAGGAGGAGATAGTC+AGG 0.526868 7_1:+27200681 None:intergenic
CAAAATGGAAATGGTCACTA+AGG 0.530817 7_1:+27194255 None:intergenic
ATTGTCAGAGATGCTGAATA+TGG 0.532713 7_1:-27194502 Msa1015220:three_prime_UTR
TTTCTTAAGATTATCATCAA+AGG 0.537118 7_1:+27200440 None:intergenic
AGCGGACTTGGTGCGGCTGG+AGG 0.547910 7_1:+27200667 None:intergenic
ATGAAGTATGAGGAAATGAC+TGG 0.549132 7_1:-27194754 Msa1015220:CDS
CCGGTAGGCGAACGTGGTGA+AGG 0.552415 7_1:-27198171 Msa1015220:CDS
CTTTACGTCAGCATTAATGC+CGG 0.552830 7_1:+27198065 None:intergenic
CAGAACAGCGGTGGTGGTGT+TGG 0.560731 7_1:+27200735 None:intergenic
GACGAGAACGGCGTTGCAGT+TGG 0.564683 7_1:+27196761 None:intergenic
GAGGGTTGTCTATCTTTCCC+CGG 0.565473 7_1:-27198084 Msa1015220:CDS
TTCAATCCGGTAGGCGAACG+TGG 0.572000 7_1:-27198177 Msa1015220:CDS
GTGGAAGAAGCGGTTTGGAA+TGG 0.573783 7_1:+27200703 None:intergenic
TAATGATGAAGAAGATGACT+TGG 0.576162 7_1:+27200758 None:intergenic
TCAGAGATGCTGAATATGGT+TGG 0.579427 7_1:-27194498 Msa1015220:three_prime_UTR
GAGAACGGCGTTGCAGTTGG+TGG 0.580924 7_1:+27196764 None:intergenic
CAAGAAGGAGCAACATCGCA+GGG 0.582275 7_1:+27196792 None:intergenic
ATATTAGGCTCATCACTTAG+CGG 0.587915 7_1:-27194560 Msa1015220:three_prime_UTR
AGAGAATGCACAGACGAGAA+CGG 0.588068 7_1:+27196749 None:intergenic
CAACATCGCAGGGAGGAGAT+GGG 0.588167 7_1:+27196802 None:intergenic
AGATAGTCAGGTGGAAGAAG+CGG 0.589249 7_1:+27200693 None:intergenic
GATTGATGCACGTAATGTCA+AGG 0.590467 7_1:-27197367 Msa1015220:CDS
CAGTTGGTGGCAGTGCAAGA+AGG 0.594166 7_1:+27196777 None:intergenic
GGTCTTTCAGCACCCCAAGT+AGG 0.597078 7_1:-27198222 Msa1015220:CDS
CATGATTTCCCAAAACCAGA+AGG 0.597253 7_1:+27194685 None:intergenic
CACGTAATGTCAAGGGAACA+CGG 0.598459 7_1:-27197359 Msa1015220:CDS
GCCATCGCCACAAATTTGAA+CGG 0.598541 7_1:+27200791 None:intergenic
ATTCAGGTTGCTCTGAAGGG+TGG 0.600084 7_1:-27194285 Msa1015220:three_prime_UTR
GTTTGTCTGGCCTTCCAGCA+CGG 0.600965 7_1:-27197326 Msa1015220:CDS
CTAGTAGTGGATAGTCATCA+AGG 0.604478 7_1:-27194339 Msa1015220:three_prime_UTR
CAGCAAGTGCAGAACAGCGG+TGG 0.606678 7_1:+27200726 None:intergenic
GTTGAAATATCCGTGCTGGA+AGG 0.611276 7_1:+27197316 None:intergenic
TGAACATTAATTCCTACTTG+GGG 0.618628 7_1:+27198210 None:intergenic
AATGATGAAGAAGATGACTT+GGG 0.622365 7_1:+27200759 None:intergenic
AACCGAACACTCTTCAATGA+GGG 0.628227 7_1:-27198102 Msa1015220:CDS
AAATCATCTCCAAATCACAC+TGG 0.629947 7_1:+27194191 None:intergenic
GATGAAGAAGATGACTTGGG+AGG 0.636397 7_1:+27200762 None:intergenic
GAACCGAACACTCTTCAATG+AGG 0.639867 7_1:-27198103 Msa1015220:CDS
TTACGTCAGCATTAATGCCG+GGG 0.640683 7_1:+27198067 None:intergenic
ATATATAGAAGAAAAGTGAA+AGG 0.642680 7_1:-27194462 Msa1015220:three_prime_UTR
ATGATTTCCCAAAACCAGAA+GGG 0.648338 7_1:+27194686 None:intergenic
ATTGATGCACGTAATGTCAA+GGG 0.648857 7_1:-27197366 Msa1015220:CDS
TGGCAGCAAGTGCAGAACAG+CGG 0.685500 7_1:+27200723 None:intergenic
GAAGGAGCAACATCGCAGGG+AGG 0.697879 7_1:+27196795 None:intergenic
TGGAGGAGGAGATAGTCAGG+TGG 0.738771 7_1:+27200684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTATTAAGATTAAA+GGG + chr7_1:27195230-27195249 None:intergenic 10.0%
!!! ATTTTTCTTATTAAGATTAA+AGG + chr7_1:27195231-27195250 None:intergenic 10.0%
!! ATTTACAAAATAAATCAAAA+AGG + chr7_1:27197288-27197307 None:intergenic 10.0%
!! TACATAAACAAAAAAAATTT+CGG + chr7_1:27197371-27197390 None:intergenic 10.0%
!!! AATTGTAAAAATCTTATTTT+TGG + chr7_1:27199923-27199942 None:intergenic 10.0%
!! ATATTTAGGAAATATTTGTT+TGG - chr7_1:27194792-27194811 Msa1015220:intron 15.0%
!! TATTTAGGAAATATTTGTTT+GGG - chr7_1:27194793-27194812 Msa1015220:intron 15.0%
!!! TTTTCTTATTAAGATTAAAG+GGG + chr7_1:27195229-27195248 None:intergenic 15.0%
!! GTCAAAATAAATTGTTAATA+AGG + chr7_1:27195649-27195668 None:intergenic 15.0%
!!! TACTTTTACTATTAGAATAA+GGG + chr7_1:27195801-27195820 None:intergenic 15.0%
!! AAATTGCAAATATAATAGAT+GGG + chr7_1:27196987-27197006 None:intergenic 15.0%
!! AAAATTGCAAATATAATAGA+TGG + chr7_1:27196988-27197007 None:intergenic 15.0%
!! AAATATTTAATGAACCTAAA+AGG + chr7_1:27197179-27197198 None:intergenic 15.0%
!! TTGAGTTATTTATAAACTTA+TGG - chr7_1:27198358-27198377 Msa1015220:intron 15.0%
!!! TTCTAATTTTGTATTAACTA+GGG + chr7_1:27198690-27198709 None:intergenic 15.0%
!! TATATAATTGTTATATCTAC+AGG - chr7_1:27198817-27198836 Msa1015220:intron 15.0%
!! ATATAATTGTTATATCTACA+GGG - chr7_1:27198818-27198837 Msa1015220:intron 15.0%
!! AACATAAATCATAAATCAAA+AGG - chr7_1:27199498-27199517 Msa1015220:intron 15.0%
!! ACATAAATCATAAATCAAAA+GGG - chr7_1:27199499-27199518 Msa1015220:intron 15.0%
!!! TATTTTTGGTATGAATTTTA+TGG + chr7_1:27199909-27199928 None:intergenic 15.0%
!!! AATTTTTAACTTATCTATGA+GGG + chr7_1:27200068-27200087 None:intergenic 15.0%
!!! TAATTTTTAACTTATCTATG+AGG + chr7_1:27200069-27200088 None:intergenic 15.0%
!! GATAAGTTAAAAATTATTAC+AGG - chr7_1:27200073-27200092 Msa1015220:intron 15.0%
!! TTTCTTAAGATTATCATCAA+AGG + chr7_1:27194485-27194504 None:intergenic 20.0%
!! TTATAACTTCATTTCATCTT+TGG + chr7_1:27194602-27194621 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr7_1:27194645-27194664 Msa1015220:intron 20.0%
!! ATTTAGGAAATATTTGTTTG+GGG - chr7_1:27194794-27194813 Msa1015220:intron 20.0%
!! TATGATTTAAGCATTCAATT+AGG - chr7_1:27195588-27195607 Msa1015220:intron 20.0%
!!! ATTTTTTAAAGTTGTTGAGA+TGG - chr7_1:27195687-27195706 Msa1015220:intron 20.0%
!!! TTTTTTAAAGTTGTTGAGAT+GGG - chr7_1:27195688-27195707 Msa1015220:intron 20.0%
!!! AGCTAATTTTAAAATCATAG+GGG + chr7_1:27195751-27195770 None:intergenic 20.0%
!!! GAGCTAATTTTAAAATCATA+GGG + chr7_1:27195752-27195771 None:intergenic 20.0%
!!! TGAGCTAATTTTAAAATCAT+AGG + chr7_1:27195753-27195772 None:intergenic 20.0%
!!! GTACTTTTACTATTAGAATA+AGG + chr7_1:27195802-27195821 None:intergenic 20.0%
!!! ATGTTTTTATAAAACAAGAG+TGG - chr7_1:27195835-27195854 Msa1015220:intron 20.0%
!!! TAATTTCTTGTTATAGTTCT+TGG - chr7_1:27196010-27196029 Msa1015220:intron 20.0%
!!! TCAACTTTTTTCTGTTATAT+TGG + chr7_1:27196218-27196237 None:intergenic 20.0%
!!! ATATTAGTGTTCTGAAAAAA+TGG + chr7_1:27196289-27196308 None:intergenic 20.0%
!! ATTAAGAAGAGAAAAAGATA+AGG + chr7_1:27196346-27196365 None:intergenic 20.0%
!! AAAACAATAGAGAAACAAAA+AGG - chr7_1:27196371-27196390 Msa1015220:intron 20.0%
!! AAATGTTGTAAAACAATACA+AGG + chr7_1:27196569-27196588 None:intergenic 20.0%
!!! TTGTATTGTTTTACAACATT+TGG - chr7_1:27196568-27196587 Msa1015220:intron 20.0%
!!! ATTTTGAATCTAGCTTTTTT+TGG - chr7_1:27196914-27196933 Msa1015220:intron 20.0%
!!! TTTTGAATCTAGCTTTTTTT+GGG - chr7_1:27196915-27196934 Msa1015220:intron 20.0%
!! TTCATACTAAGTTCAAAAAT+TGG + chr7_1:27196958-27196977 None:intergenic 20.0%
!!! ATTTTTGAACTTAGTATGAA+TGG - chr7_1:27196958-27196977 Msa1015220:intron 20.0%
!!! CGTGTTTTATTTTCTTTTAT+TGG - chr7_1:27197394-27197413 Msa1015220:intron 20.0%
!! ATTCAAACCTATAAATAGAA+AGG - chr7_1:27197823-27197842 Msa1015220:intron 20.0%
!!! AAAGAAAGTGTTTAAAAACA+CGG + chr7_1:27198033-27198052 None:intergenic 20.0%
!!! TTTATAAACTTATGGATTGA+TGG - chr7_1:27198366-27198385 Msa1015220:intron 20.0%
!!! AGTTTAATGTTTTGATTTAG+AGG - chr7_1:27198410-27198429 Msa1015220:intron 20.0%
!!! GTTCTAATTTTGTATTAACT+AGG + chr7_1:27198691-27198710 None:intergenic 20.0%
!! ATCTATATGTGATCTTAATA+TGG + chr7_1:27198713-27198732 None:intergenic 20.0%
!! AACAGTCTTAATTATATGAA+AGG + chr7_1:27198753-27198772 None:intergenic 20.0%
!!! GTTTTTTCAAGAGTTATTTA+TGG + chr7_1:27199040-27199059 None:intergenic 20.0%
!! GCATAAATATTTAGCAATTA+TGG - chr7_1:27199336-27199355 Msa1015220:intron 20.0%
!! ATTAATTGGTAAGATTAAAC+AGG + chr7_1:27199371-27199390 None:intergenic 20.0%
!! TTGTAAAATCATCTACTTAA+AGG - chr7_1:27199422-27199441 Msa1015220:intron 20.0%
!!! CACATTTTTTTCTCTTTTTT+TGG - chr7_1:27199602-27199621 Msa1015220:intron 20.0%
!! AACTTCATTAAAGAAGAAAA+AGG - chr7_1:27199661-27199680 Msa1015220:intron 20.0%
!!! TTAGGTTTGTTAATTATTGA+GGG + chr7_1:27199742-27199761 None:intergenic 20.0%
!!! TTTAGGTTTGTTAATTATTG+AGG + chr7_1:27199743-27199762 None:intergenic 20.0%
!! TAATTAACAAACCTAAAACT+TGG - chr7_1:27199746-27199765 Msa1015220:intron 20.0%
!!! AATTAAACCATCTATTTCTA+AGG - chr7_1:27199939-27199958 Msa1015220:intron 20.0%
!! ACCAAAACTTATCTATAATT+GGG + chr7_1:27200126-27200145 None:intergenic 20.0%
!! AACCAAAACTTATCTATAAT+TGG + chr7_1:27200127-27200146 None:intergenic 20.0%
!!! AGTTTTGGTTAAATTATTAC+AGG - chr7_1:27200137-27200156 Msa1015220:intron 20.0%
!!! TTATTTTACAGGTCAATATT+AGG - chr7_1:27200347-27200366 Msa1015220:intron 20.0%
!! ATATATAGAAGAAAAGTGAA+AGG - chr7_1:27200460-27200479 Msa1015220:CDS 20.0%
! AAGTCATAGATAGATACTTA+TGG + chr7_1:27194330-27194349 None:intergenic 25.0%
!!! GTTTGTTTTTTGAATGAAGT+TGG - chr7_1:27194379-27194398 Msa1015220:three_prime_UTR 25.0%
!!! GCTACAAGCTTTTTTTTTTA+TGG - chr7_1:27194622-27194641 Msa1015220:intron 25.0%
! ATAGCTTATGGATATTTCAT+AGG - chr7_1:27194657-27194676 Msa1015220:intron 25.0%
! AAGATAGTTGTAAGACTATT+TGG + chr7_1:27194701-27194720 None:intergenic 25.0%
! AGTCTTACAACTATCTTATA+AGG - chr7_1:27194704-27194723 Msa1015220:CDS 25.0%
! GTCTTACAACTATCTTATAA+GGG - chr7_1:27194705-27194724 Msa1015220:CDS 25.0%
! CATTTGACTAGGAAATATTT+AGG - chr7_1:27194778-27194797 Msa1015220:intron 25.0%
! TGACAATTACCAAACAAATA+GGG + chr7_1:27195103-27195122 None:intergenic 25.0%
! AAGATTAAAGGGGTAAAATT+TGG + chr7_1:27195219-27195238 None:intergenic 25.0%
!!! TTATCTACAGAAAAGTACTT+AGG + chr7_1:27195410-27195429 None:intergenic 25.0%
! TGTTATAGTTCTTGGATATT+AGG - chr7_1:27196018-27196037 Msa1015220:intron 25.0%
! GTTATAGTTCTTGGATATTA+GGG - chr7_1:27196019-27196038 Msa1015220:intron 25.0%
!!! CTATTTCTACCAACAAAATA+GGG + chr7_1:27196053-27196072 None:intergenic 25.0%
!!! TATTTTTAATCATGTAAGCC+AGG - chr7_1:27196481-27196500 Msa1015220:intron 25.0%
!! ATTTTTAATCATGTAAGCCA+GGG - chr7_1:27196482-27196501 Msa1015220:intron 25.0%
! CATGATTCAAATAACATTGA+GGG - chr7_1:27196523-27196542 Msa1015220:intron 25.0%
! TTTGAATGTTACATTAACAG+TGG - chr7_1:27196647-27196666 Msa1015220:intron 25.0%
! TTGAACATTAATTCCTACTT+GGG + chr7_1:27196716-27196735 None:intergenic 25.0%
! AGGAATTAATGTTCAACTTA+TGG - chr7_1:27196720-27196739 Msa1015220:intron 25.0%
! TTGAGTATTTACTAACTCTT+GGG + chr7_1:27196798-27196817 None:intergenic 25.0%
! ATTGAGTATTTACTAACTCT+TGG + chr7_1:27196799-27196818 None:intergenic 25.0%
! AGAAGAGGATAACAAAATAA+GGG + chr7_1:27197035-27197054 None:intergenic 25.0%
!!! CATTTTTCTGGTTTCATTAT+TGG + chr7_1:27197114-27197133 None:intergenic 25.0%
! CAATAATGAAACCAGAAAAA+TGG - chr7_1:27197112-27197131 Msa1015220:intron 25.0%
! GGATGGTTATGTTATATATT+TGG + chr7_1:27197158-27197177 None:intergenic 25.0%
!! TATAACATAACCATCCTTTT+AGG - chr7_1:27197162-27197181 Msa1015220:intron 25.0%
! ATTTAATGAACCTAAAAGGA+TGG + chr7_1:27197175-27197194 None:intergenic 25.0%
! AAGGAACTCAAATAAATTAC+AGG + chr7_1:27197202-27197221 None:intergenic 25.0%
! ACTTAACAATTCTTTCAGAA+AGG + chr7_1:27197221-27197240 None:intergenic 25.0%
!! TTTCTGAAAGAATTGTTAAG+TGG - chr7_1:27197220-27197239 Msa1015220:intron 25.0%
!! CAAGCAATTTTTCTTTAGTT+GGG + chr7_1:27197434-27197453 None:intergenic 25.0%
!! ACAAGCAATTTTTCTTTAGT+TGG + chr7_1:27197435-27197454 None:intergenic 25.0%
!! TAATAAGACTTGTTTGAGTA+GGG + chr7_1:27197507-27197526 None:intergenic 25.0%
!! ATAATAAGACTTGTTTGAGT+AGG + chr7_1:27197508-27197527 None:intergenic 25.0%
!!! TCAAACAAGTCTTATTATTG+CGG - chr7_1:27197510-27197529 Msa1015220:intron 25.0%
!!! ATGGTATTTTTATGAACCTT+TGG - chr7_1:27197730-27197749 Msa1015220:intron 25.0%
! CATATAACAAGTGTTATGAT+AGG - chr7_1:27197764-27197783 Msa1015220:intron 25.0%
! CTATAAATAGAAAGGATCTA+GGG - chr7_1:27197831-27197850 Msa1015220:intron 25.0%
! TATAAATAGAAAGGATCTAG+GGG - chr7_1:27197832-27197851 Msa1015220:intron 25.0%
!!! TAAGTTATTTTTACACGACA+CGG + chr7_1:27198337-27198356 None:intergenic 25.0%
! TATATATAACCAACAAGTAG+TGG + chr7_1:27198780-27198799 None:intergenic 25.0%
! AATATAAGAGACCTATTTAG+AGG - chr7_1:27199142-27199161 Msa1015220:intron 25.0%
! TCAATCGTCAACAATTATAT+TGG + chr7_1:27199253-27199272 None:intergenic 25.0%
! TAATTTATTAACAGACCTGT+CGG + chr7_1:27199394-27199413 None:intergenic 25.0%
! ACAGGTCTGTTAATAAATTA+TGG - chr7_1:27199394-27199413 Msa1015220:intron 25.0%
!!! TCTTTTTTTGGCAAAAAAAG+AGG - chr7_1:27199614-27199633 Msa1015220:intron 25.0%
! TCTTCTTTAATGAAGTTTAG+AGG + chr7_1:27199658-27199677 None:intergenic 25.0%
! AGAAAAAGGAAACAAGAAAA+AGG - chr7_1:27199675-27199694 Msa1015220:intron 25.0%
!! TTGTTAATTATTGAGGGTTT+TGG + chr7_1:27199736-27199755 None:intergenic 25.0%
!!! TTTACATGGTTTGTTTGTTT+GGG + chr7_1:27199825-27199844 None:intergenic 25.0%
!! AAAGAAATTGGACCAATTTT+TGG + chr7_1:27200027-27200046 None:intergenic 25.0%
! AGATAGCTAATGAAAGAAAT+TGG + chr7_1:27200039-27200058 None:intergenic 25.0%
! ACTTATCTATAATTGGGTTT+CGG + chr7_1:27200120-27200139 None:intergenic 25.0%
!! ACCCAATTATAGATAAGTTT+TGG - chr7_1:27200122-27200141 Msa1015220:intron 25.0%
! TATAAGTTTGTAACTAGTAG+TGG - chr7_1:27200570-27200589 Msa1015220:intron 25.0%
! TAACAAACTCAAAATGGAAA+TGG + chr7_1:27200679-27200698 None:intergenic 25.0%
! CATCATTAACAAACTCAAAA+TGG + chr7_1:27200685-27200704 None:intergenic 25.0%
AATGATGAAGAAGATGACTT+GGG + chr7_1:27194166-27194185 None:intergenic 30.0%
TAATGATGAAGAAGATGACT+TGG + chr7_1:27194167-27194186 None:intergenic 30.0%
! GGATATTTCACTATTTTCAG+CGG + chr7_1:27194424-27194443 None:intergenic 30.0%
AGGAAAAAGAATAAACGCAT+TGG - chr7_1:27194457-27194476 Msa1015220:three_prime_UTR 30.0%
CATAAGCTATAAGCTCAAAA+AGG + chr7_1:27194747-27194766 None:intergenic 30.0%
TCTAATAAGCTCATTTGACT+AGG - chr7_1:27194767-27194786 Msa1015220:intron 30.0%
TTAGGGACTAAATTGACTAA+CGG - chr7_1:27194953-27194972 Msa1015220:intron 30.0%
TTTGTAATTTACCTGCATTC+AGG - chr7_1:27195028-27195047 Msa1015220:intron 30.0%
TTGTAATTTACCTGCATTCA+GGG - chr7_1:27195029-27195048 Msa1015220:intron 30.0%
GTGACAATTACCAAACAAAT+AGG + chr7_1:27195104-27195123 None:intergenic 30.0%
CTGATCGAATTTGTAATGTT+TGG + chr7_1:27195307-27195326 None:intergenic 30.0%
AATAGCATATGAGCTTATAG+AGG + chr7_1:27195346-27195365 None:intergenic 30.0%
! TTTATGATAGTGAAAGACAG+AGG + chr7_1:27195557-27195576 None:intergenic 30.0%
! TATTAGAATAAGGGTGTACT+CGG + chr7_1:27195792-27195811 None:intergenic 30.0%
!! GCTATTTCTACCAACAAAAT+AGG + chr7_1:27196054-27196073 None:intergenic 30.0%
!! TTTTGTTGGTAGAAATAGCT+AGG - chr7_1:27196055-27196074 Msa1015220:CDS 30.0%
! TTTGTTGGTAGAAATAGCTA+GGG - chr7_1:27196056-27196075 Msa1015220:CDS 30.0%
! AACCATTTTGTGACAACTTT+TGG - chr7_1:27196315-27196334 Msa1015220:intron 30.0%
! ACCATTTTGTGACAACTTTT+GGG - chr7_1:27196316-27196335 Msa1015220:intron 30.0%
GTTCAAAAGTTGTCACAAAA+TGG - chr7_1:27196438-27196457 Msa1015220:intron 30.0%
GCATGATTCAAATAACATTG+AGG - chr7_1:27196522-27196541 Msa1015220:intron 30.0%
GTAACATTCAAAAAAACGCA+GGG + chr7_1:27196639-27196658 None:intergenic 30.0%
TGTAACATTCAAAAAAACGC+AGG + chr7_1:27196640-27196659 None:intergenic 30.0%
TGAACATTAATTCCTACTTG+GGG + chr7_1:27196715-27196734 None:intergenic 30.0%
GTTGAACATTAATTCCTACT+TGG + chr7_1:27196717-27196736 None:intergenic 30.0%
! TCAACTTATGGTTTTCAATC+CGG - chr7_1:27196732-27196751 Msa1015220:intron 30.0%
!!! GCTTTTTTTGGGCTAATTTA+TGG - chr7_1:27196926-27196945 Msa1015220:intron 30.0%
! CGTTTGAAGTTTGAAAATCT+TGG - chr7_1:27197008-27197027 Msa1015220:intron 30.0%
CAGAAGAGGATAACAAAATA+AGG + chr7_1:27197036-27197055 None:intergenic 30.0%
!! GTTATATATTTGGTTCTTGC+TGG + chr7_1:27197148-27197167 None:intergenic 30.0%
AGATAGCAAACAGAACAAAA+TGG + chr7_1:27197345-27197364 None:intergenic 30.0%
! TCTAAAGTTCATGACTATAC+TGG - chr7_1:27197455-27197474 Msa1015220:intron 30.0%
TCAAAAAACTTACCTGTAGA+TGG + chr7_1:27197642-27197661 None:intergenic 30.0%
CCTAGATCCTTTCTATTTAT+AGG + chr7_1:27197833-27197852 None:intergenic 30.0%
CCTATAAATAGAAAGGATCT+AGG - chr7_1:27197830-27197849 Msa1015220:intron 30.0%
ACATGAAAAAAAAAAAGGGC+AGG + chr7_1:27198241-27198260 None:intergenic 30.0%
!!! TGCCCTTTTTTTTTTTCATG+TGG - chr7_1:27198240-27198259 Msa1015220:intron 30.0%
GGCCACATGAAAAAAAAAAA+GGG + chr7_1:27198245-27198264 None:intergenic 30.0%
TTCTATAAAACCAGAAACTG+AGG + chr7_1:27198275-27198294 None:intergenic 30.0%
!! AGAAGTACAATTTTTCCCTT+TGG - chr7_1:27198467-27198486 Msa1015220:intron 30.0%
GCTAGTGAATAGTATTAACA+GGG - chr7_1:27198657-27198676 Msa1015220:intron 30.0%
! TGAAGTATTTCTCATGTCAA+GGG + chr7_1:27198935-27198954 None:intergenic 30.0%
! ATGAAGTATTTCTCATGTCA+AGG + chr7_1:27198936-27198955 None:intergenic 30.0%
AACTCTTGAAAAAACATGTC+TGG - chr7_1:27199045-27199064 Msa1015220:intron 30.0%
ACTCTTGAAAAAACATGTCT+GGG - chr7_1:27199046-27199065 Msa1015220:intron 30.0%
AACATCTTTCACCTCTAAAT+AGG + chr7_1:27199156-27199175 None:intergenic 30.0%
AAAATAATTGCCACAAAGCA+AGG - chr7_1:27199200-27199219 Msa1015220:intron 30.0%
ATATTTGTTTCCTTGCTTTG+TGG + chr7_1:27199213-27199232 None:intergenic 30.0%
TCGTCAACAATTATATTGGT+CGG + chr7_1:27199249-27199268 None:intergenic 30.0%
ACAATCTTTCTTCTGACTAA+TGG - chr7_1:27199272-27199291 Msa1015220:intron 30.0%
! TCTTTGTTTGAATCCCTATA+AGG + chr7_1:27199457-27199476 None:intergenic 30.0%
ACAACAAAAGAAACAAGATG+AGG - chr7_1:27199700-27199719 Msa1015220:intron 30.0%
CAACAAAAGAAACAAGATGA+GGG - chr7_1:27199701-27199720 Msa1015220:intron 30.0%
AACAAAAGAAACAAGATGAG+GGG - chr7_1:27199702-27199721 Msa1015220:intron 30.0%
!! TATTTCTAGTCAGGTTGTTA+AGG + chr7_1:27199786-27199805 None:intergenic 30.0%
ACAACCTGACTAGAAATAAA+AGG - chr7_1:27199788-27199807 Msa1015220:intron 30.0%
!! CTTTACATGGTTTGTTTGTT+TGG + chr7_1:27199826-27199845 None:intergenic 30.0%
AACATAGGTTTGTCTTTACA+TGG + chr7_1:27199839-27199858 None:intergenic 30.0%
!!! AAATTGGACCAATTTTTGGT+TGG + chr7_1:27200023-27200042 None:intergenic 30.0%
TTCCTCATACTTCATTTCAA+GGG + chr7_1:27200163-27200182 None:intergenic 30.0%
TTTCCTCATACTTCATTTCA+AGG + chr7_1:27200164-27200183 None:intergenic 30.0%
!! TTTCTATCTTTTCAGGACTT+GGG + chr7_1:27200197-27200216 None:intergenic 30.0%
ACATTACCCGTTCAAATTTG+TGG - chr7_1:27194124-27194143 Msa1015220:three_prime_UTR 35.0%
! GTTTTGTGAAGCTGAAAAAG+CGG + chr7_1:27194276-27194295 None:intergenic 35.0%
ATAGATACTTATGGTGAGAG+TGG + chr7_1:27194321-27194340 None:intergenic 35.0%
CTATCTTATAAGGGTCTGTT+TGG - chr7_1:27194714-27194733 Msa1015220:CDS 35.0%
TTGCAATTTCTCTGCATTCA+GGG + chr7_1:27194867-27194886 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG + chr7_1:27194868-27194887 None:intergenic 35.0%
ACTAACGGAGTCTACATTTA+GGG - chr7_1:27194936-27194955 Msa1015220:intron 35.0%
ACTAACGGAGTATGCATTTA+GGG - chr7_1:27194968-27194987 Msa1015220:intron 35.0%
GACTAATCTCCCTATTTGTT+TGG - chr7_1:27195091-27195110 Msa1015220:intron 35.0%
AACAAACAAAGGCAGACTAA+GGG + chr7_1:27195458-27195477 None:intergenic 35.0%
AAACAAACAAAGGCAGACTA+AGG + chr7_1:27195459-27195478 None:intergenic 35.0%
! TCTGCCTTTGTTTGTTTCAA+CGG - chr7_1:27195462-27195481 Msa1015220:intron 35.0%
TACTCCGTTGAAACAAACAA+AGG + chr7_1:27195469-27195488 None:intergenic 35.0%
CTGCACGATAAGAAATTTGA+AGG - chr7_1:27195516-27195535 Msa1015220:intron 35.0%
AGTTCTTGGATATTAGGGAA+TGG - chr7_1:27196024-27196043 Msa1015220:intron 35.0%
! TTGTTGGTAGAAATAGCTAG+GGG - chr7_1:27196057-27196076 Msa1015220:CDS 35.0%
TGTAAGACCAGTAAATCACA+AGG + chr7_1:27196168-27196187 None:intergenic 35.0%
TCCCAAAAGTTGTCACAAAA+TGG + chr7_1:27196320-27196339 None:intergenic 35.0%
AGAGAATAAGAACACAACGT+GGG - chr7_1:27196399-27196418 Msa1015220:intron 35.0%
TATTGATATTTCCATCACCC+TGG + chr7_1:27196502-27196521 None:intergenic 35.0%
! TCCTTTTTGTACAGAACTGA+TGG - chr7_1:27196673-27196692 Msa1015220:intron 35.0%
ACCATCAGTTCTGTACAAAA+AGG + chr7_1:27196677-27196696 None:intergenic 35.0%
TTGTACAGAACTGATGGTAT+TGG - chr7_1:27196679-27196698 Msa1015220:intron 35.0%
TTGCTAGAAAGAAAAAACCG+TGG + chr7_1:27197081-27197100 None:intergenic 35.0%
GAAACCAGAAAAATGGAACT+TGG - chr7_1:27197119-27197138 Msa1015220:intron 35.0%
GTTCATGACTATACTGGATA+TGG - chr7_1:27197461-27197480 Msa1015220:intron 35.0%
ATTGATGCACGTAATGTCAA+GGG - chr7_1:27197556-27197575 Msa1015220:intron 35.0%
ACATGAATTTGACCATCTAC+AGG - chr7_1:27197627-27197646 Msa1015220:intron 35.0%
TTAATTCCCCTTTCACCATT+GGG + chr7_1:27197792-27197811 None:intergenic 35.0%
ATTAATTCCCCTTTCACCAT+TGG + chr7_1:27197793-27197812 None:intergenic 35.0%
TGATACTCAGTAAACTTGTC+AGG - chr7_1:27197869-27197888 Msa1015220:intron 35.0%
! TGAAGTGGGTCATATTTTGT+GGG - chr7_1:27197999-27198018 Msa1015220:intron 35.0%
AGAGAGTGAGAGAAAACTTA+GGG + chr7_1:27198096-27198115 None:intergenic 35.0%
AAAAAAAAAAAGGGCAGGCA+GGG + chr7_1:27198236-27198255 None:intergenic 35.0%
GGGCCACATGAAAAAAAAAA+AGG + chr7_1:27198246-27198265 None:intergenic 35.0%
! GTACAATTTTTCCCTTTGGT+AGG - chr7_1:27198471-27198490 Msa1015220:intron 35.0%
TCAAACTCGAGATTCTACTA+TGG + chr7_1:27198552-27198571 None:intergenic 35.0%
! TAATACTATTCACTAGCCTC+TGG + chr7_1:27198654-27198673 None:intergenic 35.0%
GGCTAGTGAATAGTATTAAC+AGG - chr7_1:27198656-27198675 Msa1015220:intron 35.0%
! TGAAAGGTGTAGATGTTTGT+GGG + chr7_1:27198737-27198756 None:intergenic 35.0%
! ATGAAAGGTGTAGATGTTTG+TGG + chr7_1:27198738-27198757 None:intergenic 35.0%
CAGTCATTCTCTCAAAGAAA+AGG + chr7_1:27198847-27198866 None:intergenic 35.0%
! GAAGTTCTTGATAGTATTCG+TGG - chr7_1:27198869-27198888 Msa1015220:intron 35.0%
ATGCGTATTAAAAGCTTAGC+TGG - chr7_1:27198967-27198986 Msa1015220:intron 35.0%
CTCGTGATACAATGAATCTA+AGG + chr7_1:27198994-27199013 None:intergenic 35.0%
CAAGAGTTATTTATGGATGC+AGG + chr7_1:27199033-27199052 None:intergenic 35.0%
GAGTGCTTAATCAAGATTTG+AGG + chr7_1:27199094-27199113 None:intergenic 35.0%
AATCTTGATTAAGCACTCGA+TGG - chr7_1:27199096-27199115 Msa1015220:intron 35.0%
! ATGGTGTCAAGTTCTTGATT+GGG - chr7_1:27199115-27199134 Msa1015220:intron 35.0%
TGTCTAAGTCTATGATGTGA+AGG - chr7_1:27199175-27199194 Msa1015220:intron 35.0%
ATTATCTTGCATGAGAGTGA+GGG + chr7_1:27199301-27199320 None:intergenic 35.0%
TATTATCTTGCATGAGAGTG+AGG + chr7_1:27199302-27199321 None:intergenic 35.0%
ATCTTACCAATTAATCCGAC+AGG - chr7_1:27199376-27199395 Msa1015220:intron 35.0%
! AAAGGCTAGTTATGCCTTAT+AGG - chr7_1:27199440-27199459 Msa1015220:intron 35.0%
! AAGGCTAGTTATGCCTTATA+GGG - chr7_1:27199441-27199460 Msa1015220:intron 35.0%
ACAAAAGAAACAAGATGAGG+GGG - chr7_1:27199703-27199722 Msa1015220:intron 35.0%
ACCTGACTAGAAATAAAAGG+AGG - chr7_1:27199791-27199810 Msa1015220:intron 35.0%
!!! TCCTCCTTTTATTTCTAGTC+AGG + chr7_1:27199795-27199814 None:intergenic 35.0%
AAGACAAACCTATGTTTGCA+AGG - chr7_1:27199843-27199862 Msa1015220:intron 35.0%
AGACAAACCTATGTTTGCAA+GGG - chr7_1:27199844-27199863 Msa1015220:intron 35.0%
TTTCCCATGTGTATAGAGAA+GGG + chr7_1:27199886-27199905 None:intergenic 35.0%
CTTGGAACCTTAGAAATAGA+TGG + chr7_1:27199949-27199968 None:intergenic 35.0%
!! CATCTATTTCTAAGGTTCCA+AGG - chr7_1:27199947-27199966 Msa1015220:intron 35.0%
ATCAGTCTCCAACCAAAAAT+TGG - chr7_1:27200012-27200031 Msa1015220:intron 35.0%
ATTATTACAGGCCCTTGAAA+TGG - chr7_1:27200085-27200104 Msa1015220:intron 35.0%
ATGAAGTATGAGGAAATGAC+TGG - chr7_1:27200168-27200187 Msa1015220:intron 35.0%
!! CTTTCTATCTTTTCAGGACT+TGG + chr7_1:27200198-27200217 None:intergenic 35.0%
ATGATTTCCCAAAACCAGAA+GGG + chr7_1:27200239-27200258 None:intergenic 35.0%
TTGGGAAATCATGATCTTCA+AGG - chr7_1:27200247-27200266 Msa1015220:intron 35.0%
ATCAATGCAAAAGACAAACG+TGG + chr7_1:27200290-27200309 None:intergenic 35.0%
ATATTAGGCTCATCACTTAG+CGG - chr7_1:27200362-27200381 Msa1015220:intron 35.0%
ATTGTCAGAGATGCTGAATA+TGG - chr7_1:27200420-27200439 Msa1015220:CDS 35.0%
AGAGCAATCGTCATTTATTC+AGG - chr7_1:27200621-27200640 Msa1015220:intron 35.0%
!! ATTTATTCAGGTTGCTCTGA+AGG - chr7_1:27200633-27200652 Msa1015220:intron 35.0%
!! TTTATTCAGGTTGCTCTGAA+GGG - chr7_1:27200634-27200653 Msa1015220:intron 35.0%
CAAAATGGAAATGGTCACTA+AGG + chr7_1:27200670-27200689 None:intergenic 35.0%
! CATTTTTCTCCAGTGTGATT+TGG - chr7_1:27200722-27200741 Msa1015220:CDS 35.0%
AAATCATCTCCAAATCACAC+TGG + chr7_1:27200734-27200753 None:intergenic 35.0%
AATATCCAGACGCGAAGTTA+AGG - chr7_1:27194437-27194456 Msa1015220:three_prime_UTR 40.0%
! TTTTTCCTTAACTTCGCGTC+TGG + chr7_1:27194445-27194464 None:intergenic 40.0%
ACCAACAGAGTCTACATTCA+GGG + chr7_1:27194896-27194915 None:intergenic 40.0%
AGACTCTGTTGGTCAATTTC+AGG - chr7_1:27194903-27194922 Msa1015220:intron 40.0%
GACTCTGTTGGTCAATTTCA+GGG - chr7_1:27194904-27194923 Msa1015220:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr7_1:27194921-27194940 Msa1015220:intron 40.0%
GACTAACGGAGTCTACATTT+AGG - chr7_1:27194935-27194954 Msa1015220:intron 40.0%
GACTAACGGAGTATGCATTT+AGG - chr7_1:27194967-27194986 Msa1015220:intron 40.0%
CTTTAGTCCCTGAATAGGAA+AGG + chr7_1:27195070-27195089 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr7_1:27194852-27194871 None:intergenic 40.0%
AATCAAGAAACCAATCCCAG+AGG - chr7_1:27195898-27195917 Msa1015220:intron 40.0%
!!! CAGCTCATGCTATTTTGTCA+GGG + chr7_1:27195974-27195993 None:intergenic 40.0%
!!! TCAGCTCATGCTATTTTGTC+AGG + chr7_1:27195975-27195994 None:intergenic 40.0%
! GAATGGCTACCCTATTTTGT+TGG - chr7_1:27196041-27196060 Msa1015220:intron 40.0%
! TGTTGGTAGAAATAGCTAGG+GGG - chr7_1:27196058-27196077 Msa1015220:CDS 40.0%
GGGGATAGAAATCATAGTCT+GGG - chr7_1:27196077-27196096 Msa1015220:CDS 40.0%
TTCTGCAATTGAGTGAGTGT+AGG + chr7_1:27196116-27196135 None:intergenic 40.0%
GTCTTACACCCAAAGTTTGT+CGG - chr7_1:27196138-27196157 Msa1015220:intron 40.0%
AAGGTGAACCGACAAACTTT+GGG + chr7_1:27196149-27196168 None:intergenic 40.0%
GAGAGAATAAGAACACAACG+TGG - chr7_1:27196398-27196417 Msa1015220:intron 40.0%
! CTTATGGTTTTCAATCCGGT+AGG - chr7_1:27196736-27196755 Msa1015220:intron 40.0%
AACCGAACACTCTTCAATGA+GGG - chr7_1:27196820-27196839 Msa1015220:intron 40.0%
!! AACCCTCATTGAAGAGTGTT+CGG + chr7_1:27196825-27196844 None:intergenic 40.0%
TTTACGTCAGCATTAATGCC+GGG + chr7_1:27196859-27196878 None:intergenic 40.0%
CTTTACGTCAGCATTAATGC+CGG + chr7_1:27196860-27196879 None:intergenic 40.0%
!! GATGCCAAGTTCCATTTTTC+TGG + chr7_1:27197126-27197145 None:intergenic 40.0%
GTTATCATGACGAGCTTCAA+TGG - chr7_1:27197242-27197261 Msa1015220:intron 40.0%
GCATCAATCTTCACAGATTC+TGG + chr7_1:27197544-27197563 None:intergenic 40.0%
GATTGATGCACGTAATGTCA+AGG - chr7_1:27197555-27197574 Msa1015220:intron 40.0%
TCATGTTGAAATATCCGTGC+TGG + chr7_1:27197613-27197632 None:intergenic 40.0%
GCATTTCTGCTTGTAGAAGA+TGG - chr7_1:27197711-27197730 Msa1015220:intron 40.0%
ATATGCAGACGACATACCAA+AGG + chr7_1:27197749-27197768 None:intergenic 40.0%
TGGTGAAAGGGGAATTAATG+AGG - chr7_1:27197794-27197813 Msa1015220:intron 40.0%
AATAGAAAGGATCTAGGGGT+CGG - chr7_1:27197836-27197855 Msa1015220:intron 40.0%
TTGTAAGAACATCCCCAATG+AGG - chr7_1:27197923-27197942 Msa1015220:intron 40.0%
TGTAAGAACATCCCCAATGA+GGG - chr7_1:27197924-27197943 Msa1015220:intron 40.0%
! TTGGCTCAACTGTTTTGCAA+CGG - chr7_1:27197969-27197988 Msa1015220:intron 40.0%
AAATATGACCCACTTCAGCA+AGG + chr7_1:27197996-27198015 None:intergenic 40.0%
! CTGAAGTGGGTCATATTTTG+TGG - chr7_1:27197998-27198017 Msa1015220:intron 40.0%
GAGAGAGTGAGAGAAAACTT+AGG + chr7_1:27198097-27198116 None:intergenic 40.0%
GAAAAAAAAAAAGGGCAGGC+AGG + chr7_1:27198237-27198256 None:intergenic 40.0%
ACCAGAAACTGAGGAAGTAA+GGG + chr7_1:27198266-27198285 None:intergenic 40.0%
AACCAGAAACTGAGGAAGTA+AGG + chr7_1:27198267-27198286 None:intergenic 40.0%
GCTCATAAGATCCTACCAAA+GGG + chr7_1:27198485-27198504 None:intergenic 40.0%
ATGAGCCATGTTACAATCCT+CGG - chr7_1:27198499-27198518 Msa1015220:intron 40.0%
AGATTCTACTATGGATCTGG+AGG + chr7_1:27198543-27198562 None:intergenic 40.0%
TCGAGATTCTACTATGGATC+TGG + chr7_1:27198546-27198565 None:intergenic 40.0%
!! TTTCTGGTTACATTGACCAG+AGG - chr7_1:27198635-27198654 Msa1015220:intron 40.0%
TAGTATTCGTGGACAGTTAC+AGG - chr7_1:27198880-27198899 Msa1015220:intron 40.0%
TCTCATGTCAAGGGAAAGAA+TGG + chr7_1:27198926-27198945 None:intergenic 40.0%
! GATGGTGTCAAGTTCTTGAT+TGG - chr7_1:27199114-27199133 Msa1015220:intron 40.0%
AACAGACCTGTCGGATTAAT+TGG + chr7_1:27199385-27199404 None:intergenic 40.0%
TTGGCAAAAAAAGAGGTAGC+AGG - chr7_1:27199621-27199640 Msa1015220:intron 40.0%
TGGCAAAAAAAGAGGTAGCA+GGG - chr7_1:27199622-27199641 Msa1015220:intron 40.0%
CAAAAGAAACAAGATGAGGG+GGG - chr7_1:27199704-27199723 Msa1015220:intron 40.0%
! AGCTTGGTATGCCAAGTTTT+AGG + chr7_1:27199760-27199779 None:intergenic 40.0%
CAGGTTGTTAAGGAAAAGCT+TGG + chr7_1:27199776-27199795 None:intergenic 40.0%
GTTCCCTTCTCTATACACAT+GGG - chr7_1:27199880-27199899 Msa1015220:intron 40.0%
GTTTCCCATGTGTATAGAGA+AGG + chr7_1:27199887-27199906 None:intergenic 40.0%
GGTGTATGTGTCCATTTCAA+GGG + chr7_1:27200099-27200118 None:intergenic 40.0%
! CTGCGACTTTCTATCTTTTC+AGG + chr7_1:27200204-27200223 None:intergenic 40.0%
AGAAAGTCGCAGAACAAGAA+AGG - chr7_1:27200212-27200231 Msa1015220:intron 40.0%
CATGATTTCCCAAAACCAGA+AGG + chr7_1:27200240-27200259 None:intergenic 40.0%
!!! CTGCTTGCTGCTTATTTTAC+AGG - chr7_1:27200336-27200355 Msa1015220:intron 40.0%
TCATCACTTAGCGGAATTTC+TGG - chr7_1:27200371-27200390 Msa1015220:intron 40.0%
TCAGAGATGCTGAATATGGT+TGG - chr7_1:27200424-27200443 Msa1015220:CDS 40.0%
!! CTAGTAGTGGATAGTCATCA+AGG - chr7_1:27200583-27200602 Msa1015220:intron 40.0%
ATGACGATTGCTCTGATCAT+AGG + chr7_1:27200615-27200634 None:intergenic 40.0%
CCATCGCCACAAATTTGAAC+GGG + chr7_1:27194133-27194152 None:intergenic 45.0%
GCCATCGCCACAAATTTGAA+CGG + chr7_1:27194134-27194153 None:intergenic 45.0%
! GATGAAGAAGATGACTTGGG+AGG + chr7_1:27194163-27194182 None:intergenic 45.0%
AGATAGTCAGGTGGAAGAAG+CGG + chr7_1:27194232-27194251 None:intergenic 45.0%
! TGAAGCTGAAAAAGCGGACT+TGG + chr7_1:27194270-27194289 None:intergenic 45.0%
TAGTCACGTTAGTCCCTGAA+TGG - chr7_1:27194820-27194839 Msa1015220:intron 45.0%
AGTCACGTTAGTCCCTGAAT+GGG - chr7_1:27194821-27194840 Msa1015220:intron 45.0%
GACTACTCCTTTCCCATTCA+GGG + chr7_1:27194836-27194855 None:intergenic 45.0%
TGACTACTCCTTTCCCATTC+AGG + chr7_1:27194837-27194856 None:intergenic 45.0%
TCCCTGAATGTAGACTCTGT+TGG - chr7_1:27194892-27194911 Msa1015220:intron 45.0%
GACCAACAGAGTCTACATTC+AGG + chr7_1:27194897-27194916 None:intergenic 45.0%
TCACTTTAGTCCCTGAATGC+AGG + chr7_1:27194854-27194873 None:intergenic 45.0%
TGACGACTCCTTTCCTATTC+AGG - chr7_1:27195059-27195078 Msa1015220:intron 45.0%
GACGACTCCTTTCCTATTCA+GGG - chr7_1:27195060-27195079 Msa1015220:intron 45.0%
ATACACACTCGTTCTGCGTT+TGG - chr7_1:27195619-27195638 Msa1015220:intron 45.0%
TATAAAGCAGGGACACCTCT+GGG + chr7_1:27195916-27195935 None:intergenic 45.0%
TTATAAAGCAGGGACACCTC+TGG + chr7_1:27195917-27195936 None:intergenic 45.0%
GAGGACACGGTTATAAAGCA+GGG + chr7_1:27195927-27195946 None:intergenic 45.0%
AGAGGACACGGTTATAAAGC+AGG + chr7_1:27195928-27195947 None:intergenic 45.0%
TATAACCGTGTCCTCTGTTC+TGG - chr7_1:27195932-27195951 Msa1015220:intron 45.0%
ATAACCGTGTCCTCTGTTCT+GGG - chr7_1:27195933-27195952 Msa1015220:intron 45.0%
GGGGGATAGAAATCATAGTC+TGG - chr7_1:27196076-27196095 Msa1015220:CDS 45.0%
CAAGGTGAACCGACAAACTT+TGG + chr7_1:27196150-27196169 None:intergenic 45.0%
CGGTTCACCTTGTGATTTAC+TGG - chr7_1:27196158-27196177 Msa1015220:intron 45.0%
AATCATGTAAGCCAGGGTGA+TGG - chr7_1:27196488-27196507 Msa1015220:intron 45.0%
ACCATCAATAACACCCACCA+TGG - chr7_1:27196597-27196616 Msa1015220:intron 45.0%
!! ACCATGGTGGGTGTTATTGA+TGG + chr7_1:27196601-27196620 None:intergenic 45.0%
CGTTAGAAAGCAACCATGGT+GGG + chr7_1:27196613-27196632 None:intergenic 45.0%
TCGTTAGAAAGCAACCATGG+TGG + chr7_1:27196614-27196633 None:intergenic 45.0%
GACTCGTTAGAAAGCAACCA+TGG + chr7_1:27196617-27196636 None:intergenic 45.0%
GAACCGAACACTCTTCAATG+AGG - chr7_1:27196819-27196838 Msa1015220:intron 45.0%
TTACGTCAGCATTAATGCCG+GGG + chr7_1:27196858-27196877 None:intergenic 45.0%
CGGCATTAATGCTGACGTAA+AGG - chr7_1:27196858-27196877 Msa1015220:intron 45.0%
GTTATCCTCTTCTGACCAAC+TGG - chr7_1:27197042-27197061 Msa1015220:intron 45.0%
AAAAGCCAGTTGGTCAGAAG+AGG + chr7_1:27197050-27197069 None:intergenic 45.0%
!!! TCTTCTGACCAACTGGCTTT+TGG - chr7_1:27197049-27197068 Msa1015220:intron 45.0%
CACGTAATGTCAAGGGAACA+CGG - chr7_1:27197563-27197582 Msa1015220:intron 45.0%
! CGGTTTTCAGTCAGTTTGTC+TGG - chr7_1:27197583-27197602 Msa1015220:intron 45.0%
GTTGAAATATCCGTGCTGGA+AGG + chr7_1:27197609-27197628 None:intergenic 45.0%
GTGTTATGATAGGCACCCAA+TGG - chr7_1:27197774-27197793 Msa1015220:intron 45.0%
ATAGGCACCCAATGGTGAAA+GGG - chr7_1:27197782-27197801 Msa1015220:intron 45.0%
ATAGAAAGGATCTAGGGGTC+GGG - chr7_1:27197837-27197856 Msa1015220:intron 45.0%
GGGGATGTTCTTACAATGCA+AGG + chr7_1:27197919-27197938 None:intergenic 45.0%
TAGTCTACGATCCCTCATTG+GGG + chr7_1:27197938-27197957 None:intergenic 45.0%
CTAGTCTACGATCCCTCATT+GGG + chr7_1:27197939-27197958 None:intergenic 45.0%
CACTTTCTTTGATGAGACGC+AGG - chr7_1:27198043-27198062 Msa1015220:intron 45.0%
AGAGAATGCACAGACGAGAA+CGG + chr7_1:27198176-27198195 None:intergenic 45.0%
TACACGACACGGTTCAAACA+GGG + chr7_1:27198326-27198345 None:intergenic 45.0%
TTACACGACACGGTTCAAAC+AGG + chr7_1:27198327-27198346 None:intergenic 45.0%
GGCTCATAAGATCCTACCAA+AGG + chr7_1:27198486-27198505 None:intergenic 45.0%
TGAGCCATGTTACAATCCTC+GGG - chr7_1:27198500-27198519 Msa1015220:intron 45.0%
GTAACCCGAGGATTGTAACA+TGG + chr7_1:27198507-27198526 None:intergenic 45.0%
GGATAAAAGATCGTAACCCG+AGG + chr7_1:27198519-27198538 None:intergenic 45.0%
TTCTACTATGGATCTGGAGG+AGG + chr7_1:27198540-27198559 None:intergenic 45.0%
AGAAAGCTGAGCATCTGCAA+TGG + chr7_1:27198620-27198639 None:intergenic 45.0%
ATTGCAGATGCTCAGCTTTC+TGG - chr7_1:27198619-27198638 Msa1015220:intron 45.0%
CTGTTCATGCCACTACTTGT+TGG - chr7_1:27198768-27198787 Msa1015220:intron 45.0%
TGTATCACGAGCTCCTATCT+AGG - chr7_1:27199003-27199022 Msa1015220:intron 45.0%
GTATCACGAGCTCCTATCTA+GGG - chr7_1:27199004-27199023 Msa1015220:intron 45.0%
CAAAAAAAGAGGTAGCAGGG+TGG - chr7_1:27199625-27199644 Msa1015220:intron 45.0%
! GCTGATTCCCTTGCAAACAT+AGG + chr7_1:27199854-27199873 None:intergenic 45.0%
TTGCAAGGGAATCAGCACAT+TGG - chr7_1:27199858-27199877 Msa1015220:intron 45.0%
GGTTCCCTTCTCTATACACA+TGG - chr7_1:27199879-27199898 Msa1015220:intron 45.0%
CGGTGTATGTGTCCATTTCA+AGG + chr7_1:27200100-27200119 None:intergenic 45.0%
GGCCCTTGAAATGAAGTATG+AGG - chr7_1:27200158-27200177 Msa1015220:intron 45.0%
AGAACAAGAAAGGTCCCTTC+TGG - chr7_1:27200222-27200241 Msa1015220:intron 45.0%
!!! AGAAAGGTCCCTTCTGGTTT+TGG - chr7_1:27200228-27200247 Msa1015220:intron 45.0%
!!! GAAAGGTCCCTTCTGGTTTT+GGG - chr7_1:27200229-27200248 Msa1015220:intron 45.0%
CCCGTTCAAATTTGTGGCGA+TGG - chr7_1:27194130-27194149 Msa1015220:three_prime_UTR 50.0%
! GTGGAAGAAGCGGTTTGGAA+TGG + chr7_1:27194222-27194241 None:intergenic 50.0%
!! CTGAAAAAGCGGACTTGGTG+CGG + chr7_1:27194265-27194284 None:intergenic 50.0%
CGTTAGTCCCTGAATGGGAA+AGG - chr7_1:27194826-27194845 Msa1015220:intron 50.0%
AAGTCCCAGAACAGAGGACA+CGG + chr7_1:27195940-27195959 None:intergenic 50.0%
AGACAGAAGTCCCAGAACAG+AGG + chr7_1:27195946-27195965 None:intergenic 50.0%
GAGGGTTGTCTATCTTTCCC+CGG - chr7_1:27196838-27196857 Msa1015220:intron 50.0%
GATAGGCACCCAATGGTGAA+AGG - chr7_1:27197781-27197800 Msa1015220:intron 50.0%
TAGGCACCCAATGGTGAAAG+GGG - chr7_1:27197783-27197802 Msa1015220:intron 50.0%
CCTAGTCTACGATCCCTCAT+TGG + chr7_1:27197940-27197959 None:intergenic 50.0%
CCAATGAGGGATCGTAGACT+AGG - chr7_1:27197937-27197956 Msa1015220:intron 50.0%
GTAGACTAGGATCGCACGTT+TGG - chr7_1:27197950-27197969 Msa1015220:intron 50.0%
CAAGAAGGAGCAACATCGCA+GGG + chr7_1:27198133-27198152 None:intergenic 50.0%
AAAGGTGGAGAACACGTTGC+AGG + chr7_1:27198213-27198232 None:intergenic 50.0%
AAAAAAGGGCAGGCAGGGAA+AGG + chr7_1:27198231-27198250 None:intergenic 50.0%
GCCCTTACTTCCTCAGTTTC+TGG - chr7_1:27198262-27198281 Msa1015220:intron 50.0%
GACACGGTTCAAACAGGGTA+GGG + chr7_1:27198321-27198340 None:intergenic 50.0%
TTGAGCGCTTACCCCAAATG+AGG - chr7_1:27198588-27198607 Msa1015220:intron 50.0%
TGAGCGCTTACCCCAAATGA+GGG - chr7_1:27198589-27198608 Msa1015220:intron 50.0%
AATGGAGCTCCCCTCATTTG+GGG + chr7_1:27198602-27198621 None:intergenic 50.0%
CAATGGAGCTCCCCTCATTT+GGG + chr7_1:27198603-27198622 None:intergenic 50.0%
GGATGCAGGTTTCCCTAGAT+AGG + chr7_1:27199019-27199038 None:intergenic 50.0%
TGTGCGCGCACTTATGTTTG+TGG + chr7_1:27199554-27199573 None:intergenic 50.0%
AAACAAGATGAGGGGGGACT+AGG - chr7_1:27199710-27199729 Msa1015220:intron 50.0%
CTAACGATGCTATCGTGCCT+TGG + chr7_1:27199967-27199986 None:intergenic 50.0%
! TGATTCTCAGCTGGTGGTGA+TGG + chr7_1:27199996-27200015 None:intergenic 50.0%
! GTTGGAGACTGATTCTCAGC+TGG + chr7_1:27200005-27200024 None:intergenic 50.0%
!! ATTCAGGTTGCTCTGAAGGG+TGG - chr7_1:27200637-27200656 Msa1015220:CDS 50.0%
TGGCAGCAAGTGCAGAACAG+CGG + chr7_1:27194202-27194221 None:intergenic 55.0%
GTCAGGTGGAAGAAGCGGTT+TGG + chr7_1:27194227-27194246 None:intergenic 55.0%
TGGAGGAGGAGATAGTCAGG+TGG + chr7_1:27194241-27194260 None:intergenic 55.0%
GGTCTTTCAGCACCCCAAGT+AGG - chr7_1:27196700-27196719 Msa1015220:intron 55.0%
TTCAATCCGGTAGGCGAACG+TGG - chr7_1:27196745-27196764 Msa1015220:intron 55.0%
GGCACTCACCAAAAGCCAGT+TGG + chr7_1:27197060-27197079 None:intergenic 55.0%
!! CTGGCTTTTGGTGAGTGCCA+CGG - chr7_1:27197061-27197080 Msa1015220:intron 55.0%
! GTTTGTCTGGCCTTCCAGCA+CGG - chr7_1:27197596-27197615 Msa1015220:intron 55.0%
TGCAACGGACCTTGCTGAAG+TGG - chr7_1:27197984-27198003 Msa1015220:intron 55.0%
GCAACGGACCTTGCTGAAGT+GGG - chr7_1:27197985-27198004 Msa1015220:intron 55.0%
CAACATCGCAGGGAGGAGAT+GGG + chr7_1:27198123-27198142 None:intergenic 55.0%
GCAAGAAGGAGCAACATCGC+AGG + chr7_1:27198134-27198153 None:intergenic 55.0%
!! CAGTTGGTGGCAGTGCAAGA+AGG + chr7_1:27198148-27198167 None:intergenic 55.0%
TTCAAACAGGGTAGGGCAGG+GGG + chr7_1:27198314-27198333 None:intergenic 55.0%
GTTCAAACAGGGTAGGGCAG+GGG + chr7_1:27198315-27198334 None:intergenic 55.0%
GGTTCAAACAGGGTAGGGCA+GGG + chr7_1:27198316-27198335 None:intergenic 55.0%
CGACACGGTTCAAACAGGGT+AGG + chr7_1:27198322-27198341 None:intergenic 55.0%
GAGCGCTTACCCCAAATGAG+GGG - chr7_1:27198590-27198609 Msa1015220:intron 55.0%
GCAATGGAGCTCCCCTCATT+TGG + chr7_1:27198604-27198623 None:intergenic 55.0%
! GGAGACTGATTCTCAGCTGG+TGG + chr7_1:27200002-27200021 None:intergenic 55.0%
! CAGAACAGCGGTGGTGGTGT+TGG + chr7_1:27194190-27194209 None:intergenic 60.0%
CAAGTGCAGAACAGCGGTGG+TGG + chr7_1:27194196-27194215 None:intergenic 60.0%
CAGCAAGTGCAGAACAGCGG+TGG + chr7_1:27194199-27194218 None:intergenic 60.0%
GGCTGGAGGAGGAGATAGTC+AGG + chr7_1:27194244-27194263 None:intergenic 60.0%
!! AAAAGCGGACTTGGTGCGGC+TGG + chr7_1:27194261-27194280 None:intergenic 60.0%
!! AGCAGGGACACCTCTGGGAT+TGG + chr7_1:27195911-27195930 None:intergenic 60.0%
CCTTCACCACGTTCGCCTAC+CGG + chr7_1:27196754-27196773 None:intergenic 60.0%
GCAACATCGCAGGGAGGAGA+TGG + chr7_1:27198124-27198143 None:intergenic 60.0%
GAAGGAGCAACATCGCAGGG+AGG + chr7_1:27198130-27198149 None:intergenic 60.0%
GAGAACGGCGTTGCAGTTGG+TGG + chr7_1:27198161-27198180 None:intergenic 60.0%
GACGAGAACGGCGTTGCAGT+TGG + chr7_1:27198164-27198183 None:intergenic 60.0%
GGTGGAGAACACGTTGCAGG+CGG + chr7_1:27198210-27198229 None:intergenic 60.0%
AAAGGGCAGGCAGGGAAAGG+TGG + chr7_1:27198228-27198247 None:intergenic 60.0%
CGGTTCAAACAGGGTAGGGC+AGG + chr7_1:27198317-27198336 None:intergenic 60.0%
CCGGTAGGCGAACGTGGTGA+AGG - chr7_1:27196751-27196770 Msa1015220:intron 65.0%
!! GGACTTGGTGCGGCTGGAGG+AGG + chr7_1:27194255-27194274 None:intergenic 70.0%
!! AGCGGACTTGGTGCGGCTGG+AGG + chr7_1:27194258-27194277 None:intergenic 70.0%
CGCGCTCGCACACACACGCA+TGG - chr7_1:27199578-27199597 Msa1015220:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 27194119 27200825 27194119 ID=Msa1015220;Name=Msa1015220
chr7_1 mRNA 27194119 27200825 27194119 ID=Msa1015220-mRNA-1;Parent=Msa1015220;Name=Msa1015220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=30|0.71|0.87|0.87|0.85|0.75|8|476|277
chr7_1 exon 27194119 27194586 27194119 ID=Msa1015220-mRNA-1:exon:5808;Parent=Msa1015220-mRNA-1
chr7_1 exon 27194676 27194785 27194676 ID=Msa1015220-mRNA-1:exon:5807;Parent=Msa1015220-mRNA-1
chr7_1 exon 27196043 27196105 27196043 ID=Msa1015220-mRNA-1:exon:5806;Parent=Msa1015220-mRNA-1
chr7_1 exon 27196760 27196825 27196760 ID=Msa1015220-mRNA-1:exon:5805;Parent=Msa1015220-mRNA-1
chr7_1 exon 27197296 27197406 27197296 ID=Msa1015220-mRNA-1:exon:5804;Parent=Msa1015220-mRNA-1
chr7_1 exon 27198065 27198257 27198065 ID=Msa1015220-mRNA-1:exon:5803;Parent=Msa1015220-mRNA-1
chr7_1 exon 27200408 27200546 27200408 ID=Msa1015220-mRNA-1:exon:5802;Parent=Msa1015220-mRNA-1
chr7_1 exon 27200636 27200825 27200636 ID=Msa1015220-mRNA-1:exon:5801;Parent=Msa1015220-mRNA-1
chr7_1 five_prime_UTR 27200796 27200825 27200796 ID=Msa1015220-mRNA-1:five_prime_utr;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27200636 27200795 27200636 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27200408 27200546 27200408 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27198065 27198257 27198065 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27197296 27197406 27197296 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27196760 27196825 27196760 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27196043 27196105 27196043 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 CDS 27194684 27194785 27194684 ID=Msa1015220-mRNA-1:cds;Parent=Msa1015220-mRNA-1
chr7_1 three_prime_UTR 27194676 27194683 27194676 ID=Msa1015220-mRNA-1:three_prime_utr;Parent=Msa1015220-mRNA-1
chr7_1 three_prime_UTR 27194119 27194586 27194119 ID=Msa1015220-mRNA-1:three_prime_utr;Parent=Msa1015220-mRNA-1
Gene Sequence

>Msa1015220

ATGGCTTCACTCCTCCCAAGTCATCTTCTTCATCATTACCAACACCACCACCGCTGTTCTGCACTTGCTGCCATTCCAAACCGCTTCTTCCACCTGACTATCTCCTCCTCCAGCCGCACCAAGTCCGCTTTTTCAGCTTCACAAAACGAACTCGCTTCTCTTGGTGATTTAGAATTTGAAGCGCCGCTGAAAATAGTGAAATATCCAGACGCGAAGTTAAGGAAAAAGAATAAACGCATTGGAACCTTTGATGATAATCTTAAGAAACTTGTAGATGAAATGTTCGACGTAATGTACAAAACTGATGGTATTGGTCTTTCAGCACCCCAAGTAGGAATTAATGTTCAACTTATGGTTTTCAATCCGGTAGGCGAACGTGGTGAAGGAGAAGAAATTGTTCTTGTAAACCCAAGAGTTAGTAAATACTCAATGAACCGAACACTCTTCAATGAGGGTTGTCTATCTTTCCCCGGCATTAATGCTGACGTAAAGAGACCAGAATCTGTGAAGATTGATGCACGTAATGTCAAGGGAACACGGTTTTCAGTCAGTTTGTCTGGCCTTCCAGCACGGATATTTCAACATGAATTTGACCATCTACAGTCCCATCTCCTCCCTGCGATGTTGCTCCTTCTTGCACTGCCACCAACTGCAACGCCGTTCTCGTCTGGAATCCTTTTCTTTGAGAGAATGACTGACGAAGTTCTTGATAGTATTCGTGGACAGTTACAGGCCCTTGAAATGAAGTATGAGGAAATGACTGGATTCCCAAGTCCTGAAAAGATAGAAAGTCGCAGAACAAGAAAGGTCCCTTCTGGTTTTGGGAAATCATGA

Protein sequence

>Msa1015220

MASLLPSHLLHHYQHHHRCSALAAIPNRFFHLTISSSSRTKSAFSASQNELASLGDLEFEAPLKIVKYPDAKLRKKNKRIGTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSKYSMNRTLFNEGCLSFPGINADVKRPESVKIDARNVKGTRFSVSLSGLPARIFQHEFDHLQSHLLPAMLLLLALPPTATPFSSGILFFERMTDEVLDSIRGQLQALEMKYEEMTGFPSPEKIESRRTRKVPSGFGKS*