AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264960 MtrunA17_Chr4g0073171 94.340 265 15 0 1 265 1 265 0.0 521
Msa1264960 MtrunA17_Chr2g0300621 29.255 188 108 5 58 236 106 277 5.15e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264960 AT4G28030.1 64.831 236 83 0 27 262 31 266 1.67e-114 330
Msa1264960 AT4G28030.2 61.017 236 81 1 27 262 31 255 5.01e-103 300
Msa1264960 AT2G06025.1 30.481 187 107 4 58 236 95 266 2.95e-16 77.0
Msa1264960 AT2G06025.6 30.481 187 107 4 58 236 95 266 2.95e-16 77.0
Msa1264960 AT2G06025.4 30.481 187 107 4 58 236 95 266 2.95e-16 77.0

Find 62 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTAAGGAGCGTGTTTC+AGG 0.154494 8_2:-68614013 Msa1264960:CDS
CAAAGTCAGTTGCTCGTAAT+TGG 0.193463 8_2:-68613150 Msa1264960:CDS
CTTTCTACGATGATGAATTC+TGG 0.240043 8_2:-68614286 Msa1264960:CDS
TTCATGTACAATTTCTTTGC+TGG 0.253198 8_2:+68611246 None:intergenic
GTTAATGCAGAATTTGAAAA+TGG 0.275846 8_2:+68614410 None:intergenic
CTTTCAATCACCTAATTTGA+TGG 0.329354 8_2:-68611138 Msa1264960:exon
CACGACAACACCATCAAATT+AGG 0.334600 8_2:+68611128 None:intergenic
CGTAAGTGTCTGGACGAAAT+TGG 0.337880 8_2:+68614231 None:intergenic
AGGATTGGAATTGAGTTCTA+AGG 0.343231 8_2:+68614372 None:intergenic
GCTAGAGAGTTGCACAGAAA+TGG 0.349757 8_2:-68613199 Msa1264960:CDS
AAAGTCAGTTGCTCGTAATT+GGG 0.384466 8_2:-68613149 Msa1264960:CDS
AGTCTTCCTGATGAAATTGT+AGG 0.385815 8_2:-68613710 Msa1264960:CDS
TGATTTATGTTCTTCATGTA+AGG 0.404309 8_2:-68613915 Msa1264960:intron
ACGTGAGTTTGAAGCACTTA+AGG 0.420143 8_2:-68614026 Msa1264960:CDS
AATGGAGAAGATGAATGAAT+TGG 0.432279 8_2:+68614428 None:intergenic
TTTCTACGATGATGAATTCT+GGG 0.435140 8_2:-68614285 Msa1264960:CDS
CTAGAGAGTTGCACAGAAAT+GGG 0.439454 8_2:-68613198 Msa1264960:CDS
TTTACTTATGAATGAAATGA+AGG 0.445885 8_2:+68611016 None:intergenic
ACTTGGACTCCGTAAGTGTC+TGG 0.451152 8_2:+68614221 None:intergenic
TTCATCCCTACAATTTCATC+AGG 0.451868 8_2:+68613704 None:intergenic
CCCGTGTGACTGTGTTAATA+TGG 0.473695 8_2:-68611097 Msa1264960:three_prime_UTR
CAATTTCGTCCAGACACTTA+CGG 0.474222 8_2:-68614230 Msa1264960:CDS
GAGTGATGAGCCTGCATGGC+AGG 0.475010 8_2:-68611205 Msa1264960:CDS
TTTGATGGTGTTGTCGTGTC+GGG 0.481584 8_2:-68611123 Msa1264960:three_prime_UTR
AGAAACCTTGCCTGCCATGC+AGG 0.481695 8_2:+68611195 None:intergenic
TCATAATTCATTTCTTACAA+TGG 0.489089 8_2:+68610977 None:intergenic
GGAGAAGATGAATGAATTGG+AGG 0.499020 8_2:+68614431 None:intergenic
ATTCTGCTAGTGGAGAAGAC+AGG 0.503889 8_2:-68613769 Msa1264960:CDS
AAAATATGTGCGGCGAGTGC+AGG 0.505381 8_2:+68610837 None:intergenic
GGAGAAGACAGGGTTGTAGT+TGG 0.511921 8_2:-68613758 Msa1264960:CDS
AATGTTTATGGAAGAAGCAT+AGG 0.513227 8_2:+68614352 None:intergenic
CTTTGCTGGTTCATTGTCAA+CGG 0.514602 8_2:+68611260 None:intergenic
CACTTAAGGAGCGTGTTTCA+GGG 0.519287 8_2:-68614012 Msa1264960:CDS
CTAGTGGAGCTGATACTACA+AGG 0.523464 8_2:-68613246 Msa1264960:CDS
TTATGGAAGAAGCATAGGAT+TGG 0.526352 8_2:+68614357 None:intergenic
AGAAATTGTACATGAAGAGC+GGG 0.527874 8_2:-68611239 Msa1264960:CDS
ATGAGCCTGCATGGCAGGCA+AGG 0.531331 8_2:-68611200 Msa1264960:CDS
TTAGGATCATGCTAAGTACT+TGG 0.533106 8_2:-68614053 Msa1264960:intron
GTCTGGACGAAATTGGTTGA+AGG 0.533997 8_2:+68614238 None:intergenic
GCGAAGACTTCTGCTATGGA+TGG 0.537747 8_2:-68611163 Msa1264960:CDS
ATCCATAGCAGAAGTCTTCG+CGG 0.537820 8_2:+68611165 None:intergenic
AAGAAATTGTACATGAAGAG+CGG 0.548993 8_2:-68611240 Msa1264960:CDS
ATTTGATGGTGTTGTCGTGT+CGG 0.549344 8_2:-68611124 Msa1264960:three_prime_UTR
GACCGCGAAGACTTCTGCTA+TGG 0.554635 8_2:-68611167 Msa1264960:CDS
AGGCTAGATAAATGTGACAT+AGG 0.565192 8_2:+68613944 None:intergenic
CCATATTAACACAGTCACAC+GGG 0.572823 8_2:+68611097 None:intergenic
AGAGTTGCACAGAAATGGGT+TGG 0.578468 8_2:-68613194 Msa1264960:CDS
AAGTCAGTTGCTCGTAATTG+GGG 0.584670 8_2:-68613148 Msa1264960:intron
GTCTTCCTGATGAAATTGTA+GGG 0.587974 8_2:-68613709 Msa1264960:CDS
GAAATGAAGGAAAACTAATG+AGG 0.590130 8_2:+68611029 None:intergenic
AAGAACATAAATCATCATAG+AGG 0.592116 8_2:+68613924 None:intergenic
CGAAGACTTCTGCTATGGAT+GGG 0.593997 8_2:-68611162 Msa1264960:CDS
TTCTGCTAGTGGAGAAGACA+GGG 0.600017 8_2:-68613768 Msa1264960:CDS
GTTCATTGTCAACGGCAACA+TGG 0.600217 8_2:+68611268 None:intergenic
GCCATATTAACACAGTCACA+CGG 0.605474 8_2:+68611096 None:intergenic
GAAGGAACGAACACGAAGAG+AGG 0.628307 8_2:+68614256 None:intergenic
ATGAGAGTGATGAGCCTGCA+TGG 0.635422 8_2:-68611209 Msa1264960:CDS
CATATTAACACAGTCACACG+GGG 0.676884 8_2:+68611098 None:intergenic
TTCAGCGATTGTGATCAAAG+AGG 0.684752 8_2:+68614310 None:intergenic
GGAAAACTAATGAGGCAACG+TGG 0.710061 8_2:+68611037 None:intergenic
TAGTGGAGCTGATACTACAA+GGG 0.712956 8_2:-68613245 Msa1264960:CDS
AATTGTAGGGATGAAGCCAG+AGG 0.725736 8_2:-68613696 Msa1264960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAAGAAAAAAAAA+TGG + chr8_2:68611244-68611263 None:intergenic 10.0%
!! TTATGAATATTGAAATTATT+TGG + chr8_2:68613207-68613226 None:intergenic 10.0%
!! AATATTCATAACTATTATAT+TGG - chr8_2:68613216-68613235 Msa1264960:CDS 10.0%
!!! ATGTTTATATTTTTCTTAAT+GGG - chr8_2:68613500-68613519 Msa1264960:intron 10.0%
!!! TCTTTGTTTATGATTTTATT+TGG + chr8_2:68610893-68610912 None:intergenic 15.0%
!! TGTAATGTATATTTGTTTAT+CGG - chr8_2:68611575-68611594 Msa1264960:intron 15.0%
!!! ATTAGCTATTTTTATAACAA+AGG - chr8_2:68611854-68611873 Msa1264960:intron 15.0%
!! TTATATGAAAACAATTGATT+TGG + chr8_2:68611886-68611905 None:intergenic 15.0%
!! TAAAACATTATACAATTTGA+TGG + chr8_2:68612152-68612171 None:intergenic 15.0%
!!! AATATTCAGAACTTTTATAT+TGG - chr8_2:68612922-68612941 Msa1264960:intron 15.0%
!!! GATGTTTATATTTTTCTTAA+TGG - chr8_2:68613499-68613518 Msa1264960:intron 15.0%
!! TTTGTAAAAATAATCATCAA+GGG + chr8_2:68614491-68614510 None:intergenic 15.0%
!!! TTTTGTAAAAATAATCATCA+AGG + chr8_2:68614492-68614511 None:intergenic 15.0%
!!! TTTCCTTGATTTTAATTCAA+TGG - chr8_2:68611542-68611561 Msa1264960:intron 20.0%
!! TTTCCATTGAATTAAAATCA+AGG + chr8_2:68611548-68611567 None:intergenic 20.0%
!! ATGTATAAAAAAAATACCTC+TGG + chr8_2:68611749-68611768 None:intergenic 20.0%
!!! CATGCAATATTTTGATTAAT+AGG + chr8_2:68613117-68613136 None:intergenic 20.0%
!!! TTAGTTCTTTTGTAAATAGT+AGG - chr8_2:68613374-68613393 Msa1264960:intron 20.0%
!!! TAGTTCTTTTGTAAATAGTA+GGG - chr8_2:68613375-68613394 Msa1264960:intron 20.0%
!! ATGCTATCTTAAAATATAAC+TGG + chr8_2:68613474-68613493 None:intergenic 20.0%
!! AAAGAAAATCTAATCAACTA+GGG + chr8_2:68613855-68613874 None:intergenic 20.0%
!! AAAAGAAAATCTAATCAACT+AGG + chr8_2:68613856-68613875 None:intergenic 20.0%
!!! AAATTGTTTTCTATGATGTT+TGG + chr8_2:68613910-68613929 None:intergenic 20.0%
!!! AACATCATAGAAAACAATTT+TGG - chr8_2:68613910-68613929 Msa1264960:intron 20.0%
!! TTTACTTATGAATGAAATGA+AGG + chr8_2:68614413-68614432 None:intergenic 20.0%
!! TCATAATTCATTTCTTACAA+TGG + chr8_2:68614452-68614471 None:intergenic 20.0%
! CTATCAACACACAAAAAATA+AGG + chr8_2:68610865-68610884 None:intergenic 25.0%
! GTTAATGCAGAATTTGAAAA+TGG + chr8_2:68611019-68611038 None:intergenic 25.0%
!!! TTTTTGGGTACAAATGTTTA+TGG + chr8_2:68611089-68611108 None:intergenic 25.0%
! AAGAACATAAATCATCATAG+AGG + chr8_2:68611505-68611524 None:intergenic 25.0%
! TGATTTATGTTCTTCATGTA+AGG - chr8_2:68611511-68611530 Msa1264960:intron 25.0%
! TATATTTGTTTATCGGTCTT+TGG - chr8_2:68611582-68611601 Msa1264960:intron 25.0%
!! ATTTTATAGTATTCTGCTAG+TGG - chr8_2:68611647-68611666 Msa1264960:intron 25.0%
!! GAAAATTGATAACTCTTCTA+TGG - chr8_2:68612102-68612121 Msa1264960:intron 25.0%
! AACATTATACAATTTGATGG+AGG + chr8_2:68612149-68612168 None:intergenic 25.0%
!! TTGTATAATGTTTTACTGTC+AGG - chr8_2:68612157-68612176 Msa1264960:intron 25.0%
!! TAAGTACCAAATCCTTTTAA+AGG + chr8_2:68612457-68612476 None:intergenic 25.0%
! TTGAACTTGATTAGATATCA+GGG - chr8_2:68612481-68612500 Msa1264960:intron 25.0%
! AATACAAATGGTTAGGATTA+AGG + chr8_2:68612517-68612536 None:intergenic 25.0%
!! ATTTTCCGTATCAATACAAA+TGG + chr8_2:68612529-68612548 None:intergenic 25.0%
!!! GACTTTAATTGTTTTGAGTA+CGG - chr8_2:68612754-68612773 Msa1264960:intron 25.0%
! TGACTAAATTGAGCAAAATT+AGG + chr8_2:68612817-68612836 None:intergenic 25.0%
! TTGCTCAATTTAGTCATTAT+TGG - chr8_2:68612821-68612840 Msa1264960:intron 25.0%
!! AGACTTTCATTGTTTTCATT+AGG - chr8_2:68613042-68613061 Msa1264960:intron 25.0%
!!! ATATTTTTCTTAATGGGTTG+AGG - chr8_2:68613506-68613525 Msa1264960:intron 25.0%
! ATCTACAGTTCATGAAAAAA+TGG - chr8_2:68613531-68613550 Msa1264960:intron 25.0%
!! GATCAAGATCATATGAATTT+TGG + chr8_2:68613604-68613623 None:intergenic 25.0%
! TGTTCCAAATTGATAAACAA+TGG - chr8_2:68613638-68613657 Msa1264960:intron 25.0%
!!! ATTTTGAAATCTGTTGACAA+TGG + chr8_2:68613675-68613694 None:intergenic 25.0%
!! AATTTAGTTCAATACAGTTC+CGG + chr8_2:68613802-68613821 None:intergenic 25.0%
! AAGAAAATCTAATCAACTAG+GGG + chr8_2:68613854-68613873 None:intergenic 25.0%
!! AATTGTTCATACATTTGTTG+CGG - chr8_2:68613958-68613977 Msa1264960:CDS 25.0%
! TATTCATGAGTATATGAACT+AGG - chr8_2:68614024-68614043 Msa1264960:CDS 25.0%
! ACATTTCTTAAACCAAAAAG+TGG - chr8_2:68614084-68614103 Msa1264960:intron 25.0%
AATGGAGAAGATGAATGAAT+TGG + chr8_2:68611001-68611020 None:intergenic 30.0%
! AATGTTTATGGAAGAAGCAT+AGG + chr8_2:68611077-68611096 None:intergenic 30.0%
TTTCTACGATGATGAATTCT+GGG - chr8_2:68611141-68611160 Msa1264960:exon 30.0%
TTTAGCTACTGAATTGCAAA+AGG - chr8_2:68611299-68611318 Msa1264960:intron 30.0%
TTAGCTACTGAATTGCAAAA+GGG - chr8_2:68611300-68611319 Msa1264960:intron 30.0%
GTTTGGATTGTGATAAAAGA+TGG - chr8_2:68611326-68611345 Msa1264960:intron 30.0%
AAGCACTTAAGAAACTGTTT+GGG + chr8_2:68612003-68612022 None:intergenic 30.0%
TAAGCACTTAAGAAACTGTT+TGG + chr8_2:68612004-68612023 None:intergenic 30.0%
ATCATCCAAAACAAGCTTAA+GGG + chr8_2:68612062-68612081 None:intergenic 30.0%
! GCATAAATAGACCATTTTCA+AGG + chr8_2:68612353-68612372 None:intergenic 30.0%
TGATAGAATCTAACTGGTAA+TGG + chr8_2:68612398-68612417 None:intergenic 30.0%
ATTACCAGTTAGATTCTATC+AGG - chr8_2:68612397-68612416 Msa1264960:intron 30.0%
TTACCAGTTAGATTCTATCA+GGG - chr8_2:68612398-68612417 Msa1264960:intron 30.0%
GTTGAACTTGATTAGATATC+AGG - chr8_2:68612480-68612499 Msa1264960:intron 30.0%
! CCTAACCATTTGTATTGATA+CGG - chr8_2:68612521-68612540 Msa1264960:intron 30.0%
AAAATGAACACGTGTAAAGA+AGG - chr8_2:68612544-68612563 Msa1264960:intron 30.0%
CTTTATATATGATCCATGCT+AGG - chr8_2:68612675-68612694 Msa1264960:intron 30.0%
! TCAATAAGACTCATTTTGCA+GGG + chr8_2:68612964-68612983 None:intergenic 30.0%
! ATCAATAAGACTCATTTTGC+AGG + chr8_2:68612965-68612984 None:intergenic 30.0%
! CTTATTGATGACAGTAGTAA+TGG - chr8_2:68612976-68612995 Msa1264960:intron 30.0%
TGATTAATAGGACCCAAATT+TGG + chr8_2:68613105-68613124 None:intergenic 30.0%
TAAGACTTCCTAATTATCAC+TGG + chr8_2:68613141-68613160 None:intergenic 30.0%
CGTACCATTGTTTATCAATT+TGG + chr8_2:68613645-68613664 None:intergenic 30.0%
! GATCTAGGTTTGGTTATATT+TGG - chr8_2:68613737-68613756 Msa1264960:CDS 30.0%
!! GTTTCCATAAACTTGTTATC+CGG - chr8_2:68613780-68613799 Msa1264960:intron 30.0%
!!! ATTTTAGAGTGCCTATAACT+TGG + chr8_2:68613996-68614015 None:intergenic 30.0%
TTCATGTACAATTTCTTTGC+TGG + chr8_2:68614183-68614202 None:intergenic 30.0%
AAGAAATTGTACATGAAGAG+CGG - chr8_2:68614186-68614205 Msa1264960:intron 30.0%
CTTTCAATCACCTAATTTGA+TGG - chr8_2:68614288-68614307 Msa1264960:CDS 30.0%
GAAATGAAGGAAAACTAATG+AGG + chr8_2:68614400-68614419 None:intergenic 30.0%
!!! TGTCATTTTTGTTGTGTTCG+TGG + chr8_2:68610951-68610970 None:intergenic 35.0%
AGGATTGGAATTGAGTTCTA+AGG + chr8_2:68611057-68611076 None:intergenic 35.0%
! TTATGGAAGAAGCATAGGAT+TGG + chr8_2:68611072-68611091 None:intergenic 35.0%
!!! CAAAGAGGTGTCGATTTTTT+GGG + chr8_2:68611104-68611123 None:intergenic 35.0%
!!! TCAAAGAGGTGTCGATTTTT+TGG + chr8_2:68611105-68611124 None:intergenic 35.0%
CTTTCTACGATGATGAATTC+TGG - chr8_2:68611140-68611159 Msa1264960:exon 35.0%
ATGGAGTGAAAAAACTCACT+TGG + chr8_2:68611225-68611244 None:intergenic 35.0%
TTAGGATCATGCTAAGTACT+TGG - chr8_2:68611373-68611392 Msa1264960:intron 35.0%
AGGCTAGATAAATGTGACAT+AGG + chr8_2:68611485-68611504 None:intergenic 35.0%
AGTCTTCCTGATGAAATTGT+AGG - chr8_2:68611716-68611735 Msa1264960:intron 35.0%
GTCTTCCTGATGAAATTGTA+GGG - chr8_2:68611717-68611736 Msa1264960:intron 35.0%
TTCATCCCTACAATTTCATC+AGG + chr8_2:68611725-68611744 None:intergenic 35.0%
ATTTGTGTTTATGTCCTGTC+CGG - chr8_2:68611795-68611814 Msa1264960:intron 35.0%
! ATAAGCCTTTGTCGTTTATC+CGG + chr8_2:68611817-68611836 None:intergenic 35.0%
GTTGTTTACATAAGCTGTCA+TGG - chr8_2:68611913-68611932 Msa1264960:intron 35.0%
GATCATCCAAAACAAGCTTA+AGG + chr8_2:68612063-68612082 None:intergenic 35.0%
AAAGTCAGTTGCTCGTAATT+GGG - chr8_2:68612277-68612296 Msa1264960:intron 35.0%
AGAAACAGTCAACTGCTAAA+TGG - chr8_2:68612303-68612322 Msa1264960:intron 35.0%
! TGTTTTCACTGCCTTGAAAA+TGG - chr8_2:68612339-68612358 Msa1264960:intron 35.0%
ATTCCCTGATAGAATCTAAC+TGG + chr8_2:68612404-68612423 None:intergenic 35.0%
TCAATCGTACTTGTAAGTGT+TGG - chr8_2:68612424-68612443 Msa1264960:intron 35.0%
! CTTGTGCCTTTAAAAGGATT+TGG - chr8_2:68612448-68612467 Msa1264960:intron 35.0%
CCGTATCAATACAAATGGTT+AGG + chr8_2:68612524-68612543 None:intergenic 35.0%
!!! GGTCCACATAAGTTTTGATT+TGG - chr8_2:68612565-68612584 Msa1264960:intron 35.0%
CCTCCAAATCAAAACTTATG+TGG + chr8_2:68612571-68612590 None:intergenic 35.0%
!!! CCACATAAGTTTTGATTTGG+AGG - chr8_2:68612568-68612587 Msa1264960:intron 35.0%
! TGATTTGGAGGATAGTTCAT+AGG - chr8_2:68612580-68612599 Msa1264960:intron 35.0%
TTGAGCAAAATTAGGTGAGT+AGG + chr8_2:68612809-68612828 None:intergenic 35.0%
!! TCTCTAAGACTTCGTATCAT+GGG + chr8_2:68612851-68612870 None:intergenic 35.0%
!! ATCTCTAAGACTTCGTATCA+TGG + chr8_2:68612852-68612871 None:intergenic 35.0%
TTTACCTGCTCACCAAATTT+GGG - chr8_2:68613090-68613109 Msa1264960:intron 35.0%
TTGCATGTCCAGTGATAATT+AGG - chr8_2:68613130-68613149 Msa1264960:intron 35.0%
TAGGGTAACTGTCATAATCA+TGG - chr8_2:68613393-68613412 Msa1264960:intron 35.0%
CGCAACATGAAAAACATAAC+TGG + chr8_2:68613429-68613448 None:intergenic 35.0%
ACAGGCAGTCAAATAAAAAC+AGG + chr8_2:68613561-68613580 None:intergenic 35.0%
GATCGACGTTACAAATTTAC+AGG + chr8_2:68613579-68613598 None:intergenic 35.0%
GATCTTGATCTCGAACATAA+TGG - chr8_2:68613614-68613633 Msa1264960:intron 35.0%
AGTTCCGGATAACAAGTTTA+TGG + chr8_2:68613787-68613806 None:intergenic 35.0%
!! TGTGTGATGATAATGGTGTT+TGG + chr8_2:68613831-68613850 None:intergenic 35.0%
!! CTATGATGTTTGGTTCTTCA+TGG + chr8_2:68613900-68613919 None:intergenic 35.0%
CCTATAACTTGGAATCTACA+TGG + chr8_2:68613985-68614004 None:intergenic 35.0%
CCATGTAGATTCCAAGTTAT+AGG - chr8_2:68613982-68614001 Msa1264960:CDS 35.0%
ATTGTCATGTAGAAATCCCA+GGG + chr8_2:68614055-68614074 None:intergenic 35.0%
!! GAGTCAATGTAACCACTTTT+TGG + chr8_2:68614099-68614118 None:intergenic 35.0%
TCCATATTTGTGTGTCTTTC+AGG - chr8_2:68614117-68614136 Msa1264960:intron 35.0%
AGAAATTGTACATGAAGAGC+GGG - chr8_2:68614187-68614206 Msa1264960:intron 35.0%
GGAGAAGATGAATGAATTGG+AGG + chr8_2:68610998-68611017 None:intergenic 40.0%
TTCAGCGATTGTGATCAAAG+AGG + chr8_2:68611119-68611138 None:intergenic 40.0%
CAATTTCGTCCAGACACTTA+CGG - chr8_2:68611196-68611215 Msa1264960:CDS 40.0%
! GAATTGCAAAAGGGTGTGTT+TGG - chr8_2:68611309-68611328 Msa1264960:intron 40.0%
CGTGTTTGTCAAGTTCTGTT+AGG - chr8_2:68611355-68611374 Msa1264960:intron 40.0%
! ACGTGAGTTTGAAGCACTTA+AGG - chr8_2:68611400-68611419 Msa1264960:intron 40.0%
! AACAAGCTTAAGGGCATGTA+TGG + chr8_2:68612053-68612072 None:intergenic 40.0%
!! ACATGCCCTTAAGCTTGTTT+TGG - chr8_2:68612054-68612073 Msa1264960:intron 40.0%
! ATGTTTTACTGTCAGGCTAG+TGG - chr8_2:68612164-68612183 Msa1264960:intron 40.0%
TAGTGGAGCTGATACTACAA+GGG - chr8_2:68612181-68612200 Msa1264960:intron 40.0%
CTAGAGAGTTGCACAGAAAT+GGG - chr8_2:68612228-68612247 Msa1264960:intron 40.0%
CAAAGTCAGTTGCTCGTAAT+TGG - chr8_2:68612276-68612295 Msa1264960:intron 40.0%
AAGTCAGTTGCTCGTAATTG+GGG - chr8_2:68612278-68612297 Msa1264960:intron 40.0%
!! AATCTAACTGGTAATGGCAG+TGG + chr8_2:68612392-68612411 None:intergenic 40.0%
!! GTTGGTCTTGTGCCTTTAAA+AGG - chr8_2:68612442-68612461 Msa1264960:intron 40.0%
GAGGATAGTTCATAGGTTAG+AGG - chr8_2:68612587-68612606 Msa1264960:intron 40.0%
GATAGCCAACTTTGTCTAGT+CGG - chr8_2:68612727-68612746 Msa1264960:intron 40.0%
! ACTAGACGAAGTTGGTTACA+TGG + chr8_2:68613016-68613035 None:intergenic 40.0%
ATGTAACCAACTTCGTCTAG+TGG - chr8_2:68613015-68613034 Msa1264960:intron 40.0%
TGTAACCAACTTCGTCTAGT+GGG - chr8_2:68613016-68613035 Msa1264960:intron 40.0%
CTTTACCTGCTCACCAAATT+TGG - chr8_2:68613089-68613108 Msa1264960:intron 40.0%
! TCAACGAGACTCGTTTTGTA+GGG + chr8_2:68613258-68613277 None:intergenic 40.0%
! TTTCTAGCAGACAAGTCTCT+TGG + chr8_2:68613308-68613327 None:intergenic 40.0%
! GTTATATTTGGCTCGCAGTA+GGG - chr8_2:68613749-68613768 Msa1264960:CDS 40.0%
! TTATATTTGGCTCGCAGTAG+GGG - chr8_2:68613750-68613769 Msa1264960:CDS 40.0%
CATTGTCATGTAGAAATCCC+AGG + chr8_2:68614056-68614075 None:intergenic 40.0%
GCCTGAAAGACACACAAATA+TGG + chr8_2:68614121-68614140 None:intergenic 40.0%
!! CTTTGCTGGTTCATTGTCAA+CGG + chr8_2:68614169-68614188 None:intergenic 40.0%
CACGACAACACCATCAAATT+AGG + chr8_2:68614301-68614320 None:intergenic 40.0%
!! ATTTGATGGTGTTGTCGTGT+CGG - chr8_2:68614302-68614321 Msa1264960:CDS 40.0%
CATATTAACACAGTCACACG+GGG + chr8_2:68614331-68614350 None:intergenic 40.0%
CCATATTAACACAGTCACAC+GGG + chr8_2:68614332-68614351 None:intergenic 40.0%
GCCATATTAACACAGTCACA+CGG + chr8_2:68614333-68614352 None:intergenic 40.0%
GTCTGGACGAAATTGGTTGA+AGG + chr8_2:68611191-68611210 None:intergenic 45.0%
CGTAAGTGTCTGGACGAAAT+TGG + chr8_2:68611198-68611217 None:intergenic 45.0%
! CACTTAAGGAGCGTGTTTCA+GGG - chr8_2:68611414-68611433 Msa1264960:intron 45.0%
GCGTGTTTCAGGGAAAAAGA+CGG - chr8_2:68611424-68611443 Msa1264960:intron 45.0%
CGTGTTTCAGGGAAAAAGAC+GGG - chr8_2:68611425-68611444 Msa1264960:intron 45.0%
ATTCTGCTAGTGGAGAAGAC+AGG - chr8_2:68611657-68611676 Msa1264960:intron 45.0%
TTCTGCTAGTGGAGAAGACA+GGG - chr8_2:68611658-68611677 Msa1264960:intron 45.0%
AATTGTAGGGATGAAGCCAG+AGG - chr8_2:68611730-68611749 Msa1264960:intron 45.0%
AAGCTGTCATGGAGAGCTTA+TGG - chr8_2:68611924-68611943 Msa1264960:intron 45.0%
CTAGTGGAGCTGATACTACA+AGG - chr8_2:68612180-68612199 Msa1264960:intron 45.0%
GCTAGAGAGTTGCACAGAAA+TGG - chr8_2:68612227-68612246 Msa1264960:intron 45.0%
AGAGTTGCACAGAAATGGGT+TGG - chr8_2:68612232-68612251 Msa1264960:intron 45.0%
ATGATCCATGCTAGGAGTCA+AGG - chr8_2:68612683-68612702 Msa1264960:intron 45.0%
TGATCCATGCTAGGAGTCAA+GGG - chr8_2:68612684-68612703 Msa1264960:intron 45.0%
CTTCTCCGACTAGACAAAGT+TGG + chr8_2:68612735-68612754 None:intergenic 45.0%
! CTTTTCCCACTAGACGAAGT+TGG + chr8_2:68613024-68613043 None:intergenic 45.0%
! GTCAACGAGACTCGTTTTGT+AGG + chr8_2:68613259-68613278 None:intergenic 45.0%
TAGCAGACAAGTCTCTTGGA+AGG + chr8_2:68613304-68613323 None:intergenic 45.0%
! GGCTGGAGTTTTCTATCACA+AGG + chr8_2:68613704-68613723 None:intergenic 45.0%
! AACTGGCTTCGATCTAGGTT+TGG - chr8_2:68613727-68613746 Msa1264960:CDS 45.0%
! GGTTATATTTGGCTCGCAGT+AGG - chr8_2:68613748-68613767 Msa1264960:CDS 45.0%
! TATATTTGGCTCGCAGTAGG+GGG - chr8_2:68613751-68613770 Msa1264960:CDS 45.0%
! CTAGGGGTGTGTGATGATAA+TGG + chr8_2:68613838-68613857 None:intergenic 45.0%
ATATGAACTAGGCAAGACCC+TGG - chr8_2:68614035-68614054 Msa1264960:CDS 45.0%
TATGAACTAGGCAAGACCCT+GGG - chr8_2:68614036-68614055 Msa1264960:CDS 45.0%
GTTCATTGTCAACGGCAACA+TGG + chr8_2:68614161-68614180 None:intergenic 45.0%
ATCCATAGCAGAAGTCTTCG+CGG + chr8_2:68614264-68614283 None:intergenic 45.0%
CGAAGACTTCTGCTATGGAT+GGG - chr8_2:68614264-68614283 Msa1264960:CDS 45.0%
!! TTTGATGGTGTTGTCGTGTC+GGG - chr8_2:68614303-68614322 Msa1264960:CDS 45.0%
CCCGTGTGACTGTGTTAATA+TGG - chr8_2:68614329-68614348 Msa1264960:CDS 45.0%
GGAAAACTAATGAGGCAACG+TGG + chr8_2:68614392-68614411 None:intergenic 45.0%
GAAGGAACGAACACGAAGAG+AGG + chr8_2:68611173-68611192 None:intergenic 50.0%
ACTTGGACTCCGTAAGTGTC+TGG + chr8_2:68611208-68611227 None:intergenic 50.0%
! GCACTTAAGGAGCGTGTTTC+AGG - chr8_2:68611413-68611432 Msa1264960:intron 50.0%
GGAGAAGACAGGGTTGTAGT+TGG - chr8_2:68611668-68611687 Msa1264960:intron 50.0%
! CCTTTGTCGTTTATCCGGAC+AGG + chr8_2:68611812-68611831 None:intergenic 50.0%
CCTGTCCGGATAAACGACAA+AGG - chr8_2:68611809-68611828 Msa1264960:intron 50.0%
AACACCCTTGACTCCTAGCA+TGG + chr8_2:68612691-68612710 None:intergenic 50.0%
! AGGACCCAAATTTGGTGAGC+AGG + chr8_2:68613097-68613116 None:intergenic 50.0%
GACAAGTCTCTTGGAAGGCT+TGG + chr8_2:68613299-68613318 None:intergenic 50.0%
AGAAAACTCCAGCCCAGAAC+TGG - chr8_2:68613710-68613729 Msa1264960:CDS 50.0%
CCTAGATCGAAGCCAGTTCT+GGG + chr8_2:68613725-68613744 None:intergenic 50.0%
ACCTAGATCGAAGCCAGTTC+TGG + chr8_2:68613726-68613745 None:intergenic 50.0%
! ATATTTGGCTCGCAGTAGGG+GGG - chr8_2:68613752-68613771 Msa1264960:CDS 50.0%
ATGAGAGTGATGAGCCTGCA+TGG - chr8_2:68614217-68614236 Msa1264960:intron 50.0%
GCGAAGACTTCTGCTATGGA+TGG - chr8_2:68614263-68614282 Msa1264960:CDS 50.0%
AAAATATGTGCGGCGAGTGC+AGG + chr8_2:68614592-68614611 None:intergenic 50.0%
! TTGGAAGGCTTGGTCAGGAG+AGG + chr8_2:68613289-68613308 None:intergenic 55.0%
! GTCTCTTGGAAGGCTTGGTC+AGG + chr8_2:68613294-68613313 None:intergenic 55.0%
! CCCAGAACTGGCTTCGATCT+AGG - chr8_2:68613722-68613741 Msa1264960:CDS 55.0%
AGAAACCTTGCCTGCCATGC+AGG + chr8_2:68614234-68614253 None:intergenic 55.0%
GACCGCGAAGACTTCTGCTA+TGG - chr8_2:68614259-68614278 Msa1264960:CDS 55.0%
!! GATCGAAGCCAGTTCTGGGC+TGG + chr8_2:68613721-68613740 None:intergenic 60.0%
GAGTGATGAGCCTGCATGGC+AGG - chr8_2:68614221-68614240 Msa1264960:intron 60.0%
ATGAGCCTGCATGGCAGGCA+AGG - chr8_2:68614226-68614245 Msa1264960:CDS 60.0%
GGCTCGCAGTAGGGGGGATT+CGG - chr8_2:68613758-68613777 Msa1264960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 68610837 68614611 68610837 ID=Msa1264960;Name=Msa1264960
chr8_2 mRNA 68610837 68614611 68610837 ID=Msa1264960-mRNA-1;Parent=Msa1264960;Name=Msa1264960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=128|1|1|1|1|1|5|309|265
chr8_2 exon 68610837 68611309 68610837 ID=Msa1264960-mRNA-1:exon:22745;Parent=Msa1264960-mRNA-1
chr8_2 exon 68613149 68613269 68613149 ID=Msa1264960-mRNA-1:exon:22744;Parent=Msa1264960-mRNA-1
chr8_2 exon 68613697 68613792 68613697 ID=Msa1264960-mRNA-1:exon:22743;Parent=Msa1264960-mRNA-1
chr8_2 exon 68613916 68614071 68613916 ID=Msa1264960-mRNA-1:exon:22742;Parent=Msa1264960-mRNA-1
chr8_2 exon 68614223 68614611 68614223 ID=Msa1264960-mRNA-1:exon:22741;Parent=Msa1264960-mRNA-1
chr8_2 five_prime_UTR 68614484 68614611 68614484 ID=Msa1264960-mRNA-1:five_prime_utr;Parent=Msa1264960-mRNA-1
chr8_2 CDS 68614223 68614483 68614223 ID=Msa1264960-mRNA-1:cds;Parent=Msa1264960-mRNA-1
chr8_2 CDS 68613916 68614071 68613916 ID=Msa1264960-mRNA-1:cds;Parent=Msa1264960-mRNA-1
chr8_2 CDS 68613697 68613792 68613697 ID=Msa1264960-mRNA-1:cds;Parent=Msa1264960-mRNA-1
chr8_2 CDS 68613149 68613269 68613149 ID=Msa1264960-mRNA-1:cds;Parent=Msa1264960-mRNA-1
chr8_2 CDS 68611146 68611309 68611146 ID=Msa1264960-mRNA-1:cds;Parent=Msa1264960-mRNA-1
chr8_2 three_prime_UTR 68610837 68611145 68610837 ID=Msa1264960-mRNA-1:three_prime_utr;Parent=Msa1264960-mRNA-1
Gene Sequence

>Msa1264960

ATGACACTCATTTCTTCACTCTGTTCTTTTCCTCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAACTCAATTCCAATCCTATGCTTCTTCCATAAACATTTGTACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGCTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCTAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCATAACAGATTTGTACGTCCATGTTGCCGTTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTCTATGAGAGTGATGAGCCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>Msa1264960

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRTQFQSYASSINICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHAKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGITDLYVHVAVDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*