AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048670 MtrunA17_Chr7g0217131 95.276 254 12 0 22 275 1 254 1.57e-174 481
Msa1048670 MtrunA17_Chr5g0416421 50.201 249 109 4 26 271 7 243 1.56e-81 246
Msa1048670 MtrunA17_Chr1g0161591 33.865 251 125 4 28 270 33 250 8.70e-39 137
Msa1048670 MtrunA17_Chr7g0253621 34.959 246 140 6 28 266 5 237 2.63e-37 132
Msa1048670 MtrunA17_Chr8g0366351 33.333 255 132 5 28 273 5 230 9.22e-35 126
Msa1048670 MtrunA17_Chr5g0410831 34.766 256 127 7 28 273 5 230 3.65e-34 125
Msa1048670 MtrunA17_Chr8g0392141 33.198 247 133 5 28 270 33 251 3.72e-34 125
Msa1048670 MtrunA17_Chr5g0410821 36.434 129 67 3 149 273 1 118 9.23e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048670 AT3G01210.2 53.125 256 112 3 22 276 1 249 2.19e-72 223
Msa1048670 AT3G01210.1 53.125 256 112 3 22 276 1 249 2.19e-72 223
Msa1048670 AT1G14340.1 45.528 246 121 2 26 271 6 238 4.62e-65 204
Msa1048670 AT5G16840.2 34.413 247 127 7 30 272 9 224 9.37e-37 131
Msa1048670 AT5G46870.2 33.465 254 139 6 28 273 5 236 1.38e-36 132
Msa1048670 AT5G46870.1 33.465 254 139 6 28 273 5 236 1.38e-36 132
Msa1048670 AT5G16840.3 33.603 247 128 7 30 272 7 221 5.82e-36 129
Msa1048670 AT5G16840.1 33.603 247 128 7 30 272 9 223 5.86e-36 129
Msa1048670 AT4G17720.1 32.685 257 133 5 28 273 5 232 1.33e-35 130
Msa1048670 AT5G32450.1 34.008 247 140 5 28 265 6 238 1.09e-34 126
Msa1048670 AT1G67950.2 33.198 247 131 6 25 266 28 245 2.99e-30 115
Msa1048670 AT1G67950.1 33.198 247 131 6 25 266 27 244 3.21e-30 115
Msa1048670 AT1G67950.3 33.198 247 132 7 25 266 27 245 4.93e-30 114
Msa1048670 AT1G67950.4 33.333 213 109 5 59 266 1 185 1.81e-24 98.2

Find 64 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATGCCTGAATTTA+TGG 0.074898 7_2:+10424718 None:intergenic
GTTTCAGGGATCGATGATTT+TGG 0.234637 7_2:-10425872 Msa1048670:intron
GAGTTTATATTTGTATCTAT+TGG 0.258387 7_2:-10424275 Msa1048670:three_prime_UTR
GCTGAACTCAGCAACAAAAT+TGG 0.265972 7_2:-10424752 Msa1048670:CDS
CATCATTCTCTGTCGCTCTT+GGG 0.292251 7_2:+10428156 None:intergenic
TTTATGTAGGTTGTTGAATC+TGG 0.304615 7_2:-10428263 Msa1048670:intron
GGCGAAATCAGCCGCTGATT+TGG 0.309158 7_2:-10424507 Msa1048670:CDS
AGTTTATATTTGTATCTATT+GGG 0.311772 7_2:-10424274 Msa1048670:three_prime_UTR
GTTATACTGTCTTCATGGTT+TGG 0.321389 7_2:+10425781 None:intergenic
ACTTCGCGAAAGGAGCTCTT+TGG 0.322549 7_2:-10424553 Msa1048670:CDS
AATGTTGATATCACTAGTTT+TGG 0.328741 7_2:-10424361 Msa1048670:three_prime_UTR
ATAGTTGCGGCAACAGTTAC+TGG 0.329391 7_2:-10424620 Msa1048670:CDS
ACATCATTCTCTGTCGCTCT+TGG 0.337209 7_2:+10428155 None:intergenic
GAAAGGAGCTCTTTGGGTTT+CGG 0.346069 7_2:-10424546 Msa1048670:CDS
AAATCAGCTGTGACCGTAAC+GGG 0.347381 7_2:-10424653 Msa1048670:CDS
ACCGTATACGGCTACTTATC+TGG 0.357802 7_2:-10424388 Msa1048670:three_prime_UTR
CGTTACGGTCACAGCTGATT+TGG 0.364880 7_2:+10424655 None:intergenic
GCGAAATCAGCCGCTGATTT+GGG 0.367461 7_2:-10424506 Msa1048670:CDS
TCAGCAATAATGCAGTTTCC+AGG 0.367505 7_2:+10426798 None:intergenic
TTGACTGAAACCATAAATTC+AGG 0.369568 7_2:-10424728 Msa1048670:CDS
AAAACATACACTAAAATGTT+TGG 0.369742 7_2:-10424458 Msa1048670:three_prime_UTR
CTTCGCGAAAGGAGCTCTTT+GGG 0.373138 7_2:-10424552 Msa1048670:CDS
CTGATTGAAGATTCTGAAGA+TGG 0.375782 7_2:+10428229 None:intergenic
ATACAGATGACAGCAATAAC+TGG 0.385974 7_2:-10425816 Msa1048670:CDS
TGATACTGTATTACCGTATA+CGG 0.386674 7_2:-10424400 Msa1048670:three_prime_UTR
ACCAGATAAGTAGCCGTATA+CGG 0.406295 7_2:+10424387 None:intergenic
CCCTGGAGAAGCACTGACTA+TGG 0.407984 7_2:-10424894 Msa1048670:CDS
AGTATGTTATACTGTCTTCA+TGG 0.433173 7_2:+10425776 None:intergenic
GCCATAGTCAGTGCTTCTCC+AGG 0.433235 7_2:+10424893 None:intergenic
AGCACTGACTATGGCCCAAC+AGG 0.435623 7_2:-10424885 Msa1048670:CDS
GACAAGTTTATTTCTTCCCC+TGG 0.448188 7_2:-10424911 Msa1048670:CDS
AATCCATGATGAGCAGCAAT+TGG 0.455021 7_2:-10424336 Msa1048670:three_prime_UTR
AAACCAATTGCTGCTCATCA+TGG 0.501280 7_2:+10424333 None:intergenic
GTCAAAACAATGGTAGCTAA+AGG 0.506039 7_2:-10424860 Msa1048670:CDS
ATGCATTTCTATTTCACGCT+GGG 0.512664 7_2:-10425845 Msa1048670:CDS
ATCATTCTCTGTCGCTCTTG+GGG 0.518956 7_2:+10428157 None:intergenic
CATTGAAAGATTTAAATATG+TGG 0.523394 7_2:-10424705 Msa1048670:CDS
TATAGCTGTTGTCCCCGTTA+CGG 0.523895 7_2:+10424640 None:intergenic
TGCAGTAGACTCATAATCAC+TGG 0.524529 7_2:+10426847 None:intergenic
AGTTACTGGGAGAGCAGCTA+TGG 0.528793 7_2:-10424606 Msa1048670:CDS
ACTGTATTATAAAATATGAC+TGG 0.537692 7_2:+10424181 None:intergenic
TTTCGCGAAGTAGCTGCTAC+TGG 0.543753 7_2:+10424565 None:intergenic
TTGAACGTGTTGATGTGATA+AGG 0.555755 7_2:-10428103 Msa1048670:intron
AGTAGCAGCTACTTCGCGAA+AGG 0.561199 7_2:-10424563 Msa1048670:CDS
ATCATCTACAGCAGCAAACA+AGG 0.563010 7_2:-10424777 Msa1048670:CDS
CAGCAATAATGCAGTTTCCA+GGG 0.565158 7_2:+10426799 None:intergenic
GGGAGAGCAGCTATGGCTGC+TGG 0.571991 7_2:-10424599 Msa1048670:CDS
CAGTTAACAAATATGTATCC+CGG 0.572446 7_2:-10428209 Msa1048670:CDS
AGCGTGAAATAGAAATGCAT+TGG 0.573031 7_2:+10425848 None:intergenic
GATTTCAGCAGTATAGCCAC+CGG 0.578842 7_2:+10428190 None:intergenic
CCATAGTCAGTGCTTCTCCA+GGG 0.584544 7_2:+10424894 None:intergenic
TAGTTGCGGCAACAGTTACT+GGG 0.586425 7_2:-10424619 Msa1048670:CDS
CAAATCAGCTGTGACCGTAA+CGG 0.593214 7_2:-10424654 Msa1048670:CDS
TTCGGATATGTTATCTCGTG+CGG 0.601464 7_2:-10424528 Msa1048670:CDS
AATGCATTTCTATTTCACGC+TGG 0.619462 7_2:-10425846 Msa1048670:CDS
CATAGTCAGTGCTTCTCCAG+GGG 0.633935 7_2:+10424895 None:intergenic
GAGCAAAGATGCATTTGTGA+TGG 0.651958 7_2:-10424828 Msa1048670:CDS
CCAACAGGTTGTCAAAACAA+TGG 0.652844 7_2:-10424870 Msa1048670:CDS
TCTTCGACAGGATATGCACA+TGG 0.669039 7_2:-10424933 Msa1048670:intron
ATTTCAGCAGTATAGCCACC+GGG 0.672279 7_2:+10428191 None:intergenic
AATCAGCTGTGACCGTAACG+GGG 0.690827 7_2:-10424652 Msa1048670:CDS
TTGATGATGACCCAAATCAG+CGG 0.695347 7_2:+10424496 None:intergenic
GGGGACAACAGCTATAGTTG+CGG 0.707278 7_2:-10424633 Msa1048670:CDS
TTAACAAATATGTATCCCGG+TGG 0.755255 7_2:-10428206 Msa1048670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAAAAAAAATTGTTT+TGG + chr7_2:10424247-10424266 None:intergenic 10.0%
!! AATAATTAATCATTTACTTA+AGG - chr7_2:10425055-10425074 Msa1048670:intron 10.0%
!!! AAAAAATGTGATTTTAATTA+AGG + chr7_2:10425295-10425314 None:intergenic 10.0%
!!! AGAATATCTATTTTTATTTT+TGG - chr7_2:10425387-10425406 Msa1048670:intron 10.0%
!! ATTAATTAAATGAATCTAAA+AGG + chr7_2:10426457-10426476 None:intergenic 10.0%
!!! AAAAAAAAAAATTGTTTTGG+TGG + chr7_2:10424244-10424263 None:intergenic 15.0%
!!! AATATTTTATATCTTCAGAT+TGG - chr7_2:10424375-10424394 Msa1048670:three_prime_UTR 15.0%
!! ATTACTATATTTAATCACAT+TGG + chr7_2:10424656-10424675 None:intergenic 15.0%
!!! ATGATATGTTTGATTTTAAT+TGG + chr7_2:10425153-10425172 None:intergenic 15.0%
!!! TTTACTTTTTAATATCACTT+TGG + chr7_2:10425444-10425463 None:intergenic 15.0%
!!! AAACATTAAATAATTTTGAC+TGG - chr7_2:10425461-10425480 Msa1048670:intron 15.0%
!! CATTAAGATTGTAATAAAAA+GGG + chr7_2:10426121-10426140 None:intergenic 15.0%
!! ACATTAAGATTGTAATAAAA+AGG + chr7_2:10426122-10426141 None:intergenic 15.0%
!!! TTTTATAAGCAATTTTAAGT+TGG - chr7_2:10426157-10426176 Msa1048670:intron 15.0%
!!! ACTCAATTTTTATATTAGTT+CGG + chr7_2:10426241-10426260 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG + chr7_2:10426763-10426782 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG - chr7_2:10426763-10426782 Msa1048670:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG - chr7_2:10426764-10426783 Msa1048670:intron 15.0%
!! TTTAATAAATGTTGTATATG+TGG + chr7_2:10426973-10426992 None:intergenic 15.0%
!! AATATTGAAAATTGTGAAAA+AGG + chr7_2:10427209-10427228 None:intergenic 15.0%
!!! TTTTTTCTTAATAATGATAC+AGG - chr7_2:10430241-10430260 Msa1048670:intron 15.0%
!!! AAATTTATGTTTTGGAAAAT+TGG - chr7_2:10431563-10431582 Msa1048670:intron 15.0%
!!! CTCTAAAGTATTTAATATTA+TGG + chr7_2:10431812-10431831 None:intergenic 15.0%
!! CATTATGAAATTTAATTAAC+AGG + chr7_2:10432064-10432083 None:intergenic 15.0%
!! CTGTTAATTAAATTTCATAA+TGG - chr7_2:10432062-10432081 Msa1048670:intron 15.0%
!! AGTTTATATTTGTATCTATT+GGG - chr7_2:10432838-10432857 Msa1048670:intron 15.0%
!! AAGAAAATCTAGTAGTAAAA+CGG + chr7_2:10424507-10424526 None:intergenic 20.0%
!!! AAAAAAAAAACTTTGAGACT+AGG - chr7_2:10424923-10424942 Msa1048670:CDS 20.0%
!!! TATGTTTGATTTTAATTGGT+TGG + chr7_2:10425149-10425168 None:intergenic 20.0%
!!! TGTGATTTTAATTAAGGAAA+TGG + chr7_2:10425289-10425308 None:intergenic 20.0%
!!! AACATGTGTCATATTTTTAT+TGG - chr7_2:10425325-10425344 Msa1048670:intron 20.0%
!!! CAATCGATTTTTCTTTTAAA+AGG - chr7_2:10425534-10425553 Msa1048670:intron 20.0%
!!! TTTTAAAAGGAATCCAATTT+TGG - chr7_2:10425547-10425566 Msa1048670:intron 20.0%
!!! ATCCACTTTATTTGATTTTT+TGG + chr7_2:10425651-10425670 None:intergenic 20.0%
!! ACATTATATATGTAAGTGTT+AGG - chr7_2:10425844-10425863 Msa1048670:CDS 20.0%
!! CATTATATATGTAAGTGTTA+GGG - chr7_2:10425845-10425864 Msa1048670:CDS 20.0%
!!! TTTGTCTTTTTAAAAAAACG+AGG + chr7_2:10426001-10426020 None:intergenic 20.0%
!!! AAAAAGGGAAATAATTTGTT+TGG + chr7_2:10426106-10426125 None:intergenic 20.0%
!! ATTGTCATACTCATTAATTA+AGG + chr7_2:10426322-10426341 None:intergenic 20.0%
!!! TTATAGTAATTGATAGCAAA+GGG + chr7_2:10426424-10426443 None:intergenic 20.0%
!! CATTTAATTAATGATGTATG+TGG - chr7_2:10426465-10426484 Msa1048670:intron 20.0%
!! CAAAATTCTGAATATTTACA+GGG + chr7_2:10426545-10426564 None:intergenic 20.0%
!! ACAAAATTCTGAATATTTAC+AGG + chr7_2:10426546-10426565 None:intergenic 20.0%
!!! TGATGATGGAAAATTTTATA+AGG + chr7_2:10426605-10426624 None:intergenic 20.0%
!! CCAAAAAAAAAAAATGCTAA+TGG + chr7_2:10426651-10426670 None:intergenic 20.0%
!!! CCATTAGCATTTTTTTTTTT+TGG - chr7_2:10426648-10426667 Msa1048670:intron 20.0%
!!! TTAGCATTTTTTTTTTTTGG+TGG - chr7_2:10426651-10426670 Msa1048670:intron 20.0%
!!! GTTGATGGAAATTTTTTATA+GGG + chr7_2:10426698-10426717 None:intergenic 20.0%
!!! TGTTGATGGAAATTTTTTAT+AGG + chr7_2:10426699-10426718 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - chr7_2:10426703-10426722 Msa1048670:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr7_2:10426794-10426813 Msa1048670:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr7_2:10426795-10426814 Msa1048670:intron 20.0%
!! TTGTAGATTCATTCAATTAA+GGG + chr7_2:10426838-10426857 None:intergenic 20.0%
!! TTTGTAGATTCATTCAATTA+AGG + chr7_2:10426839-10426858 None:intergenic 20.0%
!! AATAATTCTGCAAATTATTG+TGG - chr7_2:10426922-10426941 Msa1048670:intron 20.0%
!! AAACAATGCAAAAAAACAAA+GGG - chr7_2:10427003-10427022 Msa1048670:intron 20.0%
!! TCAATTATGGTTATGATTAT+GGG + chr7_2:10427079-10427098 None:intergenic 20.0%
!! ATCAATTATGGTTATGATTA+TGG + chr7_2:10427080-10427099 None:intergenic 20.0%
!!! ATAACCATAATTGATGATAT+AGG - chr7_2:10427085-10427104 Msa1048670:intron 20.0%
!! AAACAATTAAGTTATGTGAT+TGG - chr7_2:10427530-10427549 Msa1048670:intron 20.0%
!! AACAATTAAGTTATGTGATT+GGG - chr7_2:10427531-10427550 Msa1048670:intron 20.0%
!! ATAAATGATGTTTATAAGCT+AGG - chr7_2:10427640-10427659 Msa1048670:intron 20.0%
!!! TCATTTTCTCAAATTATTAC+TGG + chr7_2:10427723-10427742 None:intergenic 20.0%
!!! CAAGTCAAAATTTGTTAATT+TGG + chr7_2:10427931-10427950 None:intergenic 20.0%
!! ATTTATGGTTATTTGTGTTA+TGG - chr7_2:10428385-10428404 Msa1048670:intron 20.0%
!!! TCATTTTCTCAAATTATTAC+CGG + chr7_2:10427723-10427742 None:intergenic 20.0%
!! TGACAAAGTTTAATAATTAC+AGG - chr7_2:10430035-10430054 Msa1048670:intron 20.0%
!! GACAAAGTTTAATAATTACA+GGG - chr7_2:10430036-10430055 Msa1048670:intron 20.0%
!!! TCTATAAAGCATAAAAGTTT+TGG - chr7_2:10430449-10430468 Msa1048670:intron 20.0%
!! ATCTATTAACAAAATACAGT+CGG + chr7_2:10431022-10431041 None:intergenic 20.0%
!!! AATTCAATTCATCTTGATTT+TGG - chr7_2:10431208-10431227 Msa1048670:intron 20.0%
!!! GTCTTTTTTCTTTACATTTT+CGG - chr7_2:10431412-10431431 Msa1048670:intron 20.0%
!!! TCAAATAACTTTAATTTCTG+TGG + chr7_2:10431517-10431536 None:intergenic 20.0%
!! ATAATTCAATGTTCAGAATA+AGG - chr7_2:10431539-10431558 Msa1048670:intron 20.0%
!! TAATTCAATGTTCAGAATAA+GGG - chr7_2:10431540-10431559 Msa1048670:intron 20.0%
!!! AATAAGGGAAATTTATGTTT+TGG - chr7_2:10431555-10431574 Msa1048670:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+AGG - chr7_2:10431674-10431693 Msa1048670:intron 20.0%
!!! TTCAAAATCTATTTTTACGT+TGG - chr7_2:10431710-10431729 Msa1048670:intron 20.0%
!! CATTGAAAGATTTAAATATG+TGG - chr7_2:10432407-10432426 Msa1048670:intron 20.0%
!!! AAACATTTTAGTGTATGTTT+TGG + chr7_2:10432655-10432674 None:intergenic 20.0%
!! AAAACATACACTAAAATGTT+TGG - chr7_2:10432654-10432673 Msa1048670:intron 20.0%
!! GAGTTTATATTTGTATCTAT+TGG - chr7_2:10432837-10432856 Msa1048670:intron 20.0%
!! ACTGTATTATAAAATATGAC+TGG + chr7_2:10432934-10432953 None:intergenic 20.0%
!!! TCTTTTCAATTTTGACTCTT+TGG - chr7_2:10424264-10424283 Msa1048670:three_prime_UTR 25.0%
!! TTTTATATCTTCAGATTGGT+CGG - chr7_2:10424379-10424398 Msa1048670:three_prime_UTR 25.0%
!! TCTGAACGTGTAAAATATTT+TGG - chr7_2:10424403-10424422 Msa1048670:three_prime_UTR 25.0%
!! GTTAGTGTTAGTACTATTTT+AGG + chr7_2:10424455-10424474 None:intergenic 25.0%
! CATGACAAAAAAAATGTGTT+CGG - chr7_2:10424816-10424835 Msa1048670:CDS 25.0%
!!! GCTACATCGATATTTTTTTT+TGG - chr7_2:10424985-10425004 Msa1048670:intron 25.0%
! GAAATGGAAACAATAAATGA+TGG + chr7_2:10425273-10425292 None:intergenic 25.0%
!!! TGTGTCATATTTTTATTGGT+TGG - chr7_2:10425329-10425348 Msa1048670:intron 25.0%
!!! GTGTCATATTTTTATTGGTT+GGG - chr7_2:10425330-10425349 Msa1048670:intron 25.0%
!!! CTATTTTAAGAAGCCAAAAT+TGG + chr7_2:10425563-10425582 None:intergenic 25.0%
!!! CAATTTTGGCTTCTTAAAAT+AGG - chr7_2:10425561-10425580 Msa1048670:intron 25.0%
! CTTAAAATAGGTTCTTTATC+AGG - chr7_2:10425573-10425592 Msa1048670:intron 25.0%
! GACCAAAAAATCAAATAAAG+TGG - chr7_2:10425646-10425665 Msa1048670:intron 25.0%
! ACACTTACATATATAATGTG+AGG + chr7_2:10425843-10425862 None:intergenic 25.0%
!!! ATGTGAATTTTTAGTCATGA+AGG - chr7_2:10425903-10425922 Msa1048670:intron 25.0%
!! ACTTTTCTCAATGTCAATTT+TGG + chr7_2:10426032-10426051 None:intergenic 25.0%
!!! AATAATTTGTTTGGTGATGT+TGG + chr7_2:10426097-10426116 None:intergenic 25.0%
!! CTTATAGTAATTGATAGCAA+AGG + chr7_2:10426425-10426444 None:intergenic 25.0%
! CACATACATCATTAATTGAA+GGG - chr7_2:10426502-10426521 Msa1048670:intron 25.0%
! TGAAGGGTTAATTAAGTAAA+TGG - chr7_2:10426518-10426537 Msa1048670:intron 25.0%
! ATAGAGACTAAAAATGATGA+TGG + chr7_2:10426619-10426638 None:intergenic 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr7_2:10426730-10426749 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr7_2:10426731-10426750 None:intergenic 25.0%
!! AATTTGCTTATAATTAGCGA+CGG - chr7_2:10426863-10426882 Msa1048670:intron 25.0%
! GAAACAATGCAAAAAAACAA+AGG - chr7_2:10427002-10427021 Msa1048670:intron 25.0%
!!! CATACTTTGTTTTTTCATCT+TGG - chr7_2:10427249-10427268 Msa1048670:intron 25.0%
! ACAATTAAGTTATGTGATTG+GGG - chr7_2:10427532-10427551 Msa1048670:intron 25.0%
!!! ATTAACAAATTTTGACTTGC+AGG - chr7_2:10427932-10427951 Msa1048670:intron 25.0%
! TATAATTACAGAATATAGCG+CGG - chr7_2:10428056-10428075 Msa1048670:intron 25.0%
! GAATATATGTGTGATATTGA+TGG - chr7_2:10428243-10428262 Msa1048670:CDS 25.0%
!! TGTGTTTAGGATGAAATTTA+TGG - chr7_2:10428370-10428389 Msa1048670:intron 25.0%
! TTGATACTTCACTATAATGT+TGG - chr7_2:10428641-10428660 Msa1048670:intron 25.0%
! CAAGGAACATTAATGTTAAA+AGG + chr7_2:10428748-10428767 None:intergenic 25.0%
! ACATAATATGAACCAAAAGA+GGG + chr7_2:10428779-10428798 None:intergenic 25.0%
! AACATAATATGAACCAAAAG+AGG + chr7_2:10428780-10428799 None:intergenic 25.0%
! GGTTACTTAACATTGTTTAT+TGG - chr7_2:10429035-10429054 Msa1048670:intron 25.0%
!!! ATAGTTTTTGAATTTGTTCC+TGG - chr7_2:10429104-10429123 Msa1048670:intron 25.0%
!! CAGGAAAAATTGTCTAATTT+TGG + chr7_2:10429364-10429383 None:intergenic 25.0%
! GTTCAAATAAGTGGTTAATT+TGG - chr7_2:10429408-10429427 Msa1048670:intron 25.0%
! TAATGAAACACCTGAAATTA+TGG + chr7_2:10429605-10429624 None:intergenic 25.0%
!! TGTATTATTTCTCCTAATAG+TGG - chr7_2:10429904-10429923 Msa1048670:intron 25.0%
! AAATGATCTTTACCACTATT+AGG + chr7_2:10429919-10429938 None:intergenic 25.0%
! TTCAACAGAGATATGAAATA+TGG + chr7_2:10430111-10430130 None:intergenic 25.0%
! TTCCAAATATAACTCTACAA+TGG - chr7_2:10431095-10431114 Msa1048670:intron 25.0%
! ATCCATTGTAGAGTTATATT+TGG + chr7_2:10431100-10431119 None:intergenic 25.0%
! TCGGATATATTCATAAATCA+TGG - chr7_2:10431431-10431450 Msa1048670:intron 25.0%
! AAATTTAATTAACAGGCCTA+AGG + chr7_2:10432057-10432076 None:intergenic 25.0%
!! GTTGAAATAAGTTGACAAAT+AGG + chr7_2:10432151-10432170 None:intergenic 25.0%
! AGCAAAAAACTACAATTGTT+TGG - chr7_2:10432689-10432708 Msa1048670:intron 25.0%
!!! AATGTTGATATCACTAGTTT+TGG - chr7_2:10432751-10432770 Msa1048670:intron 25.0%
! AAGTATGCATTTTAGACTCT+CGG - chr7_2:10424308-10424327 Msa1048670:three_prime_UTR 30.0%
AAAATCTAGTAGTAAAACGG+TGG + chr7_2:10424504-10424523 None:intergenic 30.0%
! AGTAGATGCCAAAATTTTGT+CGG + chr7_2:10424535-10424554 None:intergenic 30.0%
AAAGTTCCATGATCTTAGTT+CGG - chr7_2:10424719-10424738 Msa1048670:CDS 30.0%
TGCACAATATATACATGTGT+TGG - chr7_2:10424755-10424774 Msa1048670:CDS 30.0%
! TTTTCTCGATACACAATAGT+CGG - chr7_2:10425026-10425045 Msa1048670:intron 30.0%
GGTTGTAAAAATGATCTCTT+AGG + chr7_2:10425128-10425147 None:intergenic 30.0%
TGGTTAAAGAAAGTGGAAAA+AGG + chr7_2:10425236-10425255 None:intergenic 30.0%
!! TTTTTGCTGGTTAAAGAAAG+TGG + chr7_2:10425243-10425262 None:intergenic 30.0%
TGGAAACAATAAATGATGGT+GGG + chr7_2:10425269-10425288 None:intergenic 30.0%
ATGGAAACAATAAATGATGG+TGG + chr7_2:10425270-10425289 None:intergenic 30.0%
!! TTCTCAATGTCAATTTTGGT+GGG + chr7_2:10426028-10426047 None:intergenic 30.0%
! TTTCTCAATGTCAATTTTGG+TGG + chr7_2:10426029-10426048 None:intergenic 30.0%
TGTCCATTGTGTATGTTTAT+TGG - chr7_2:10426199-10426218 Msa1048670:intron 30.0%
ACTCCAATAAACATACACAA+TGG + chr7_2:10426205-10426224 None:intergenic 30.0%
GTCATACTCATTAATTAAGG+TGG + chr7_2:10426319-10426338 None:intergenic 30.0%
CCTTCAATTAATGATGTATG+TGG + chr7_2:10426504-10426523 None:intergenic 30.0%
CCACATACATCATTAATTGA+AGG - chr7_2:10426501-10426520 Msa1048670:intron 30.0%
ATAGGGACTAAAAATGCTAA+TGG + chr7_2:10426681-10426700 None:intergenic 30.0%
ATATGTGGATCATTCTGATT+GGG + chr7_2:10426958-10426977 None:intergenic 30.0%
TATATGTGGATCATTCTGAT+TGG + chr7_2:10426959-10426978 None:intergenic 30.0%
! TTGTATTTGAAGTGAAACAG+AGG + chr7_2:10427164-10427183 None:intergenic 30.0%
ATATTGCTTCACTCTTTCAA+AGG - chr7_2:10427224-10427243 Msa1048670:intron 30.0%
ATCAAAGACATATGCATGAT+TGG + chr7_2:10427442-10427461 None:intergenic 30.0%
! TGTCTTTTTCTAACAATGCA+TGG - chr7_2:10427875-10427894 Msa1048670:intron 30.0%
! TTTTCCTTTGATTGCTCAAT+TGG + chr7_2:10427906-10427925 None:intergenic 30.0%
! TTTGCTATCTTCAAAGAAGT+AGG + chr7_2:10428003-10428022 None:intergenic 30.0%
TAGTATGAAGCATACTCAAA+AGG - chr7_2:10428185-10428204 Msa1048670:CDS 30.0%
!!! CAAAAGGTTTGTTTTTGCAT+TGG - chr7_2:10428201-10428220 Msa1048670:CDS 30.0%
AACAATGAAGTGATGCAATT+AGG - chr7_2:10428339-10428358 Msa1048670:intron 30.0%
ACAATGAAGTGATGCAATTA+GGG - chr7_2:10428340-10428359 Msa1048670:intron 30.0%
ATATAAATAACCTCACGTGT+TGG - chr7_2:10428570-10428589 Msa1048670:intron 30.0%
TTTGTGAGACATTGTATTGT+TGG + chr7_2:10428694-10428713 None:intergenic 30.0%
ACAATACAATGTCTCACAAA+TGG - chr7_2:10428694-10428713 Msa1048670:intron 30.0%
TTAACATTAATGTTCCTTGC+AGG - chr7_2:10428749-10428768 Msa1048670:intron 30.0%
TTACTTGCTTTGCTTTATGT+AGG - chr7_2:10428836-10428855 Msa1048670:intron 30.0%
TTTATGTAGGTTGTTGAATC+TGG - chr7_2:10428849-10428868 Msa1048670:intron 30.0%
CAGTTAACAAATATGTATCC+CGG - chr7_2:10428903-10428922 Msa1048670:intron 30.0%
!!! CAGAACTTTTTTGAATACTG+TGG - chr7_2:10428981-10429000 Msa1048670:intron 30.0%
CCAATATGTAATCATAAACC+AGG + chr7_2:10429125-10429144 None:intergenic 30.0%
CCTGGTTTATGATTACATAT+TGG - chr7_2:10429122-10429141 Msa1048670:intron 30.0%
AAATTCCTTGATACATTCTC+AGG + chr7_2:10429207-10429226 None:intergenic 30.0%
CAATTCTCTTTCAAATACGA+AGG + chr7_2:10429329-10429348 None:intergenic 30.0%
!! TTTCCTGACAACTTTTTAAG+TGG - chr7_2:10429377-10429396 Msa1048670:intron 30.0%
TAACCACTTAAAAAGTTGTC+AGG + chr7_2:10429383-10429402 None:intergenic 30.0%
! GGTTAATTTGGTTCATTAGA+TGG - chr7_2:10429420-10429439 Msa1048670:intron 30.0%
! TTTGGTTCATTAGATGGTTA+AGG - chr7_2:10429426-10429445 Msa1048670:intron 30.0%
TTGGTTCATTAGATGGTTAA+GGG - chr7_2:10429427-10429446 Msa1048670:intron 30.0%
AACTTCATTAACCACGAATT+TGG - chr7_2:10429486-10429505 Msa1048670:intron 30.0%
AACTTCCTTAACCACAAATT+TGG - chr7_2:10429569-10429588 Msa1048670:intron 30.0%
ACATGGATAACCATAATTTC+AGG - chr7_2:10429592-10429611 Msa1048670:intron 30.0%
ATTTGAACACCTGAAAATTG+TGG - chr7_2:10429632-10429651 Msa1048670:intron 30.0%
GTTAACGAAGTTCAAATAAG+TGG + chr7_2:10429728-10429747 None:intergenic 30.0%
AGAGATATGAAATATGGTCA+AGG + chr7_2:10430105-10430124 None:intergenic 30.0%
CATGTTGTAACTTTGTAAGT+TGG - chr7_2:10430142-10430161 Msa1048670:intron 30.0%
! TTGTAACTTTGTAAGTTGGA+GGG - chr7_2:10430146-10430165 Msa1048670:intron 30.0%
AACTAACAGTTCTACCATAT+AGG + chr7_2:10430172-10430191 None:intergenic 30.0%
TAGTATATGTGAAGAGTTCT+TGG - chr7_2:10430199-10430218 Msa1048670:intron 30.0%
! TACTGCATATGTGACTTTTA+GGG - chr7_2:10430281-10430300 Msa1048670:intron 30.0%
ATTGAAAGTTGACAAGAACA+AGG + chr7_2:10430400-10430419 None:intergenic 30.0%
!!! CATAAAAGTTTTGGTGTTGT+GGG - chr7_2:10430458-10430477 Msa1048670:intron 30.0%
!!! TTTACTTTTTGATCCAAACG+TGG - chr7_2:10430670-10430689 Msa1048670:intron 30.0%
ATATAGTTGCATGAGTATGT+TGG - chr7_2:10430743-10430762 Msa1048670:intron 30.0%
!!! AAATACCATTGGTTTTGAGT+AGG - chr7_2:10430853-10430872 Msa1048670:intron 30.0%
CAAGATGAATTGAATTGAAC+AGG + chr7_2:10431204-10431223 None:intergenic 30.0%
AGTATGTTATACTGTCTTCA+TGG + chr7_2:10431339-10431358 None:intergenic 30.0%
GTATAACATACTCACAAGTA+TGG - chr7_2:10431347-10431366 Msa1048670:intron 30.0%
!! ATAAGTAAGAGAGCATTCTA+AGG + chr7_2:10431384-10431403 None:intergenic 30.0%
!! ACAATTGACTAAGCCTTATT+TGG + chr7_2:10431690-10431709 None:intergenic 30.0%
TGTAAGGTTAGATTGTGATT+AGG + chr7_2:10431905-10431924 None:intergenic 30.0%
AGATGACAAAGAAACCTTAT+GGG - chr7_2:10431959-10431978 Msa1048670:intron 30.0%
CGATCGTTATTAACAGTTAT+AGG - chr7_2:10432006-10432025 Msa1048670:intron 30.0%
TTGACTGAAACCATAAATTC+AGG - chr7_2:10432384-10432403 Msa1048670:intron 30.0%
TCTTTCAATGCCTGAATTTA+TGG + chr7_2:10432397-10432416 None:intergenic 30.0%
TGATACTGTATTACCGTATA+CGG - chr7_2:10432712-10432731 Msa1048670:intron 30.0%
GAGAAAAAAGAAGCTCTCTT+TGG + chr7_2:10424206-10424225 None:intergenic 35.0%
! CTTTGCTTCCGACAAAATTT+TGG - chr7_2:10424524-10424543 Msa1048670:CDS 35.0%
GGAGATTTCTTGAATTGGAT+TGG + chr7_2:10424568-10424587 None:intergenic 35.0%
AGCGAAATTTATTCGTTCCT+GGG + chr7_2:10424594-10424613 None:intergenic 35.0%
AAGCGAAATTTATTCGTTCC+TGG + chr7_2:10424595-10424614 None:intergenic 35.0%
GGAACGAATAAATTTCGCTT+TGG - chr7_2:10424595-10424614 Msa1048670:CDS 35.0%
TATCAACCGAACTAAGATCA+TGG + chr7_2:10424728-10424747 None:intergenic 35.0%
!! AAACAATAAATGATGGTGGG+TGG + chr7_2:10425266-10425285 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr7_2:10426713-10426732 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr7_2:10426721-10426740 Msa1048670:intron 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7_2:10426734-10426753 Msa1048670:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7_2:10426735-10426754 Msa1048670:intron 35.0%
GAGGCCTATATCATCAATTA+TGG + chr7_2:10427092-10427111 None:intergenic 35.0%
TATTGTCTGTCTCTTACTTC+TGG - chr7_2:10427304-10427323 Msa1048670:intron 35.0%
! TTGGGGACATCAATGTTTTT+AGG - chr7_2:10427549-10427568 Msa1048670:intron 35.0%
ATCAATTGTAGTGTTGTGTC+TGG + chr7_2:10427691-10427710 None:intergenic 35.0%
CAACACTACAATTGATACGT+AGG - chr7_2:10427695-10427714 Msa1048670:intron 35.0%
ACGTATTCAATCTGTCATGT+TGG - chr7_2:10427833-10427852 Msa1048670:intron 35.0%
CATATTCAGAAAACCACAGT+TGG + chr7_2:10428145-10428164 None:intergenic 35.0%
!!! TTTGTTTTTGCATTGGTTGC+TGG - chr7_2:10428208-10428227 Msa1048670:CDS 35.0%
GCAATCAGTTTATCGCAAAT+GGG + chr7_2:10428281-10428300 None:intergenic 35.0%
ATTTGCGATAAACTGATTGC+CGG - chr7_2:10428281-10428300 Msa1048670:intron 35.0%
TTAGGGACATCAATGTGTTT+AGG - chr7_2:10428357-10428376 Msa1048670:intron 35.0%
! CTGATTGAAGATTCTGAAGA+TGG + chr7_2:10428886-10428905 None:intergenic 35.0%
TTAACAAATATGTATCCCGG+TGG - chr7_2:10428906-10428925 Msa1048670:intron 35.0%
! TTGAACGTGTTGATGTGATA+AGG - chr7_2:10429009-10429028 Msa1048670:intron 35.0%
ACTGTAGCCTGAATTTAAGT+CGG + chr7_2:10429286-10429305 None:intergenic 35.0%
CTTAAATTCAGGCTACAGTT+TGG - chr7_2:10429287-10429306 Msa1048670:intron 35.0%
GTTAACGCAGTTCAAATAAG+TGG - chr7_2:10429399-10429418 Msa1048670:intron 35.0%
ATTAACCACGAATTTGGACT+TGG - chr7_2:10429492-10429511 Msa1048670:intron 35.0%
TGGTATGCAGTTCAAATATG+TGG + chr7_2:10429545-10429564 None:intergenic 35.0%
CATGTCCAAATTTGTGGTTA+AGG + chr7_2:10429577-10429596 None:intergenic 35.0%
CTTAACCACAAATTTGGACA+TGG - chr7_2:10429575-10429594 Msa1048670:intron 35.0%
GTTATCCATGTCCAAATTTG+TGG + chr7_2:10429583-10429602 None:intergenic 35.0%
! TGTCACAAACCACAATTTTC+AGG + chr7_2:10429644-10429663 None:intergenic 35.0%
GGTTGATTGCATTCAGTATA+TGG + chr7_2:10429707-10429726 None:intergenic 35.0%
ACAGTAAAGCTAAGATAAGC+TGG + chr7_2:10429817-10429836 None:intergenic 35.0%
! GTTGTAACTTTGTAAGTTGG+AGG - chr7_2:10430145-10430164 Msa1048670:intron 35.0%
! CTACTGCATATGTGACTTTT+AGG - chr7_2:10430280-10430299 Msa1048670:intron 35.0%
CTGCATTATTGCTGAATGTA+AGG - chr7_2:10430322-10430341 Msa1048670:intron 35.0%
! AAGGCTTTTGTCATCTTTGT+TGG - chr7_2:10430341-10430360 Msa1048670:intron 35.0%
GTCATCTTTGTTGGATATCA+TGG - chr7_2:10430350-10430369 Msa1048670:intron 35.0%
!!! GCATAAAAGTTTTGGTGTTG+TGG - chr7_2:10430457-10430476 Msa1048670:intron 35.0%
ATCACAAACTGTATGTACCA+TGG + chr7_2:10430586-10430605 None:intergenic 35.0%
ATAATGATAGACAGCTTCAG+TGG - chr7_2:10431062-10431081 Msa1048670:intron 35.0%
TAATGATAGACAGCTTCAGT+GGG - chr7_2:10431063-10431082 Msa1048670:intron 35.0%
AGCGTGAAATAGAAATGCAT+TGG + chr7_2:10431267-10431286 None:intergenic 35.0%
AATGCATTTCTATTTCACGC+TGG - chr7_2:10431266-10431285 Msa1048670:intron 35.0%
ATGCATTTCTATTTCACGCT+GGG - chr7_2:10431267-10431286 Msa1048670:intron 35.0%
ATACAGATGACAGCAATAAC+TGG - chr7_2:10431296-10431315 Msa1048670:intron 35.0%
GTTATACTGTCTTCATGGTT+TGG + chr7_2:10431334-10431353 None:intergenic 35.0%
TTGGAAAGTCATAAATCTCC+AGG - chr7_2:10431582-10431601 Msa1048670:intron 35.0%
!! CTACTTTTCATAAGCTATCC+TGG + chr7_2:10431603-10431622 None:intergenic 35.0%
AAACATACCTTCTTCCATGA+TGG - chr7_2:10431856-10431875 Msa1048670:intron 35.0%
TGAGAAAGAACGAACATGTA+AGG + chr7_2:10431921-10431940 None:intergenic 35.0%
TGTCATCTGTCATCAATAAC+AGG + chr7_2:10431947-10431966 None:intergenic 35.0%
CAGATGACAAAGAAACCTTA+TGG - chr7_2:10431958-10431977 Msa1048670:intron 35.0%
ATGACTTTATCTCTCCCATA+AGG + chr7_2:10431976-10431995 None:intergenic 35.0%
ACTTCTGACACTAAATCCTT+AGG - chr7_2:10432038-10432057 Msa1048670:intron 35.0%
!!! CAACATGTTTTTTCTTCGAC+AGG - chr7_2:10432167-10432186 Msa1048670:intron 35.0%
!!! CATTGTTTTGACAACCTGTT+GGG + chr7_2:10432244-10432263 None:intergenic 35.0%
GTCAAAACAATGGTAGCTAA+AGG - chr7_2:10432252-10432271 Msa1048670:intron 35.0%
TTTGGCATCTACTAGATTCC+TGG - chr7_2:10424542-10424561 Msa1048670:CDS 40.0%
!! TTTCTTGAATTGGATTGGCC+AGG + chr7_2:10424563-10424582 None:intergenic 40.0%
GGGATGGAGATTTCTTGAAT+TGG + chr7_2:10424573-10424592 None:intergenic 40.0%
AATTTATTCGTTCCTGGGGA+TGG + chr7_2:10424589-10424608 None:intergenic 40.0%
GCGAAATTTATTCGTTCCTG+GGG + chr7_2:10424593-10424612 None:intergenic 40.0%
GGGTGTAAGAATAATCTCCT+AGG - chr7_2:10425350-10425369 Msa1048670:intron 40.0%
TCTTGCATGAACTCTTACCT+AGG + chr7_2:10425370-10425389 None:intergenic 40.0%
ACCAACTGAGCTAGACTTAT+GGG + chr7_2:10425815-10425834 None:intergenic 40.0%
TACCAACTGAGCTAGACTTA+TGG + chr7_2:10425816-10425835 None:intergenic 40.0%
!! TGTTTGGTGATGTTGGCTTA+AGG + chr7_2:10426090-10426109 None:intergenic 40.0%
CATACACAATGGACAAAGTG+TGG + chr7_2:10426194-10426213 None:intergenic 40.0%
TTGCTTATAATTAGCGACGG+AGG - chr7_2:10426866-10426885 Msa1048670:intron 40.0%
ATATAGGCCTCTATCTCTTG+TGG - chr7_2:10427101-10427120 Msa1048670:intron 40.0%
AGGAGAAGAGAAACAGAGAA+GGG + chr7_2:10427144-10427163 None:intergenic 40.0%
TGACAGATTGAATACGTAGC+TGG + chr7_2:10427830-10427849 None:intergenic 40.0%
CTCACCAATTGAGCAATCAA+AGG - chr7_2:10427899-10427918 Msa1048670:intron 40.0%
TCACAAAGTTCTACCAACTG+TGG - chr7_2:10428129-10428148 Msa1048670:CDS 40.0%
GGCAATCAGTTTATCGCAAA+TGG + chr7_2:10428282-10428301 None:intergenic 40.0%
TTTGCGATAAACTGATTGCC+GGG - chr7_2:10428282-10428301 Msa1048670:intron 40.0%
AAAGCACACATTTAAGCTCC+CGG + chr7_2:10428303-10428322 None:intergenic 40.0%
TCTCACAAATGGAGCAATCA+TGG - chr7_2:10428705-10428724 Msa1048670:intron 40.0%
CTCACAAATGGAGCAATCAT+GGG - chr7_2:10428706-10428725 Msa1048670:intron 40.0%
TCACAAATGGAGCAATCATG+GGG - chr7_2:10428707-10428726 Msa1048670:intron 40.0%
! CGTGTTGATGTGATAAGGTA+AGG - chr7_2:10429014-10429033 Msa1048670:intron 40.0%
ACACACCTGAGAATGTATCA+AGG - chr7_2:10429199-10429218 Msa1048670:intron 40.0%
TAGATGGTTAAGGGATACAC+CGG - chr7_2:10429436-10429455 Msa1048670:intron 40.0%
GATTAATGAGTTTCAACGCC+CGG + chr7_2:10429458-10429477 None:intergenic 40.0%
GTTAACCAAGTCCAAATTCG+TGG + chr7_2:10429500-10429519 None:intergenic 40.0%
TGTGGTTAAGGAAGTTACGT+TGG + chr7_2:10429565-10429584 None:intergenic 40.0%
TGCAGTAGACTCATAATCAC+TGG + chr7_2:10430268-10430287 None:intergenic 40.0%
CAGCAATAATGCAGTTTCCA+GGG + chr7_2:10430316-10430335 None:intergenic 40.0%
TCAGCAATAATGCAGTTTCC+AGG + chr7_2:10430317-10430336 None:intergenic 40.0%
GCATGTCTATTTCAATGCCA+TGG - chr7_2:10430566-10430585 Msa1048670:intron 40.0%
AGTTGCATGAGTATGTTGGT+AGG - chr7_2:10430747-10430766 Msa1048670:intron 40.0%
GTTGCATGAGTATGTTGGTA+GGG - chr7_2:10430748-10430767 Msa1048670:intron 40.0%
AAGCTACGTGTATGACTTGA+GGG + chr7_2:10430796-10430815 None:intergenic 40.0%
AAAGCTACGTGTATGACTTG+AGG + chr7_2:10430797-10430816 None:intergenic 40.0%
!!! CATACACGTAGCTTTTTCAG+AGG - chr7_2:10430802-10430821 Msa1048670:intron 40.0%
!! GCAAGAGAGTAGTGTTTTAG+CGG - chr7_2:10430829-10430848 Msa1048670:intron 40.0%
!!! CAAGAGAGTAGTGTTTTAGC+GGG - chr7_2:10430830-10430849 Msa1048670:intron 40.0%
!! GTTTTAGCGGGAAATACCAT+TGG - chr7_2:10430842-10430861 Msa1048670:intron 40.0%
AGTATACTTCCCTAAGCGTA+CGG + chr7_2:10430939-10430958 None:intergenic 40.0%
TTTCTTCATCAACGCTGTTC+TGG + chr7_2:10430999-10431018 None:intergenic 40.0%
!!! TTTTGGTCCAATGCTGTTTC+AGG - chr7_2:10431225-10431244 Msa1048670:intron 40.0%
!! TTTGGTCCAATGCTGTTTCA+GGG - chr7_2:10431226-10431245 Msa1048670:intron 40.0%
! GTTTCAGGGATCGATGATTT+TGG - chr7_2:10431240-10431259 Msa1048670:intron 40.0%
!! GTAAGAGAGCATTCTAAGGA+AGG + chr7_2:10431380-10431399 None:intergenic 40.0%
!!! TTACGTTGGCCTTTTGTAGT+TGG - chr7_2:10431724-10431743 Msa1048670:intron 40.0%
GTACACAAGCCAACTACAAA+AGG + chr7_2:10431736-10431755 None:intergenic 40.0%
ACTTCTACTCTCTACCATCA+TGG + chr7_2:10431873-10431892 None:intergenic 40.0%
! GACAAGTTTATTTCTTCCCC+TGG - chr7_2:10432201-10432220 Msa1048670:intron 40.0%
!!! CCATTGTTTTGACAACCTGT+TGG + chr7_2:10432245-10432264 None:intergenic 40.0%
CCAACAGGTTGTCAAAACAA+TGG - chr7_2:10432242-10432261 Msa1048670:intron 40.0%
GAGCAAAGATGCATTTGTGA+TGG - chr7_2:10432284-10432303 Msa1048670:intron 40.0%
ATCATCTACAGCAGCAAACA+AGG - chr7_2:10432335-10432354 Msa1048670:intron 40.0%
GCTGAACTCAGCAACAAAAT+TGG - chr7_2:10432360-10432379 Msa1048670:intron 40.0%
TTCGGATATGTTATCTCGTG+CGG - chr7_2:10432584-10432603 Msa1048670:intron 40.0%
!! TTGATGATGACCCAAATCAG+CGG + chr7_2:10432619-10432638 None:intergenic 40.0%
ACCAGATAAGTAGCCGTATA+CGG + chr7_2:10432728-10432747 None:intergenic 40.0%
AATCCATGATGAGCAGCAAT+TGG - chr7_2:10432776-10432795 Msa1048670:intron 40.0%
AAACCAATTGCTGCTCATCA+TGG + chr7_2:10432782-10432801 None:intergenic 40.0%
TTCAAGAAATCTCCATCCCC+AGG - chr7_2:10424574-10424593 Msa1048670:CDS 45.0%
TGTCATGAGCTTAGCTCAGT+TGG + chr7_2:10424803-10424822 None:intergenic 45.0%
CCAACTGAGCTAGACTTATG+GGG + chr7_2:10425814-10425833 None:intergenic 45.0%
TGTGGATCATTCTGATTGGG+AGG + chr7_2:10426955-10426974 None:intergenic 45.0%
TGTGTGACCACAAGAGATAG+AGG + chr7_2:10427111-10427130 None:intergenic 45.0%
GAGGAGAAGAGAAACAGAGA+AGG + chr7_2:10427145-10427164 None:intergenic 45.0%
CAGTGTCATGTGTGTGTTGT+TGG - chr7_2:10427769-10427788 Msa1048670:intron 45.0%
ATGAAGCACGCACATAGATG+TGG - chr7_2:10428480-10428499 Msa1048670:intron 45.0%
TGACAGTTATGCAGAGACAC+CGG - chr7_2:10428519-10428538 Msa1048670:intron 45.0%
ATTTCAGCAGTATAGCCACC+GGG + chr7_2:10428924-10428943 None:intergenic 45.0%
GATTTCAGCAGTATAGCCAC+CGG + chr7_2:10428925-10428944 None:intergenic 45.0%
ATCATTCTCTGTCGCTCTTG+GGG + chr7_2:10428958-10428977 None:intergenic 45.0%
CATCATTCTCTGTCGCTCTT+GGG + chr7_2:10428959-10428978 None:intergenic 45.0%
ACATCATTCTCTGTCGCTCT+TGG + chr7_2:10428960-10428979 None:intergenic 45.0%
GCCTCTTCCGACTTAAATTC+AGG - chr7_2:10429276-10429295 Msa1048670:intron 45.0%
GCCTGAATTTAAGTCGGAAG+AGG + chr7_2:10429280-10429299 None:intergenic 45.0%
AGATGGTTAAGGGATACACC+GGG - chr7_2:10429437-10429456 Msa1048670:intron 45.0%
! TGTAAGTTGGAGGGCCTATA+TGG - chr7_2:10430155-10430174 Msa1048670:intron 45.0%
!! TTTTAGGGATGCTTATGCCC+TGG - chr7_2:10430296-10430315 Msa1048670:intron 45.0%
TGTTCGACACACCAGTGTTA+TGG - chr7_2:10430513-10430532 Msa1048670:intron 45.0%
! TGGAAGCACAACCATAACAC+TGG + chr7_2:10430527-10430546 None:intergenic 45.0%
CGACTTGATACAACACGACA+TGG + chr7_2:10430547-10430566 None:intergenic 45.0%
TTCTTCTGTTGGTCCACGTT+TGG + chr7_2:10430686-10430705 None:intergenic 45.0%
AACGTGGACCAACAGAAGAA+TGG - chr7_2:10430686-10430705 Msa1048670:intron 45.0%
TGGACCAACAGAAGAATGGT+CGG - chr7_2:10430690-10430709 Msa1048670:intron 45.0%
GAGTAGAAGACGTGTGTGTT+AGG - chr7_2:10430716-10430735 Msa1048670:intron 45.0%
TAGAAGACGTGTGTGTTAGG+CGG - chr7_2:10430719-10430738 Msa1048670:intron 45.0%
CTCTGCCTACTCAAAACCAA+TGG + chr7_2:10430861-10430880 None:intergenic 45.0%
AGGCAGAGTCGATGATGATA+TGG - chr7_2:10430873-10430892 Msa1048670:intron 45.0%
TGATTGCGAATTACCTGGTC+AGG - chr7_2:10430898-10430917 Msa1048670:intron 45.0%
GAAGTCACTTAATCCTGACC+AGG + chr7_2:10430914-10430933 None:intergenic 45.0%
ACCTATGATTGCCCCTGATT+GGG - chr7_2:10430961-10430980 Msa1048670:intron 45.0%
ATCGATCCCTGAAACAGCAT+TGG + chr7_2:10431235-10431254 None:intergenic 45.0%
AAGAAGCGACGAATCAAGAC+AGG + chr7_2:10431760-10431779 None:intergenic 45.0%
CTCTCTACCATCATGGAAGA+AGG + chr7_2:10431866-10431885 None:intergenic 45.0%
TCTTCGACAGGATATGCACA+TGG - chr7_2:10432179-10432198 Msa1048670:intron 45.0%
CAAATCAGCTGTGACCGTAA+CGG - chr7_2:10432458-10432477 Msa1048670:intron 45.0%
AAATCAGCTGTGACCGTAAC+GGG - chr7_2:10432459-10432478 Msa1048670:intron 45.0%
TATAGCTGTTGTCCCCGTTA+CGG + chr7_2:10432475-10432494 None:intergenic 45.0%
ATAGTTGCGGCAACAGTTAC+TGG - chr7_2:10432492-10432511 Msa1048670:intron 45.0%
TAGTTGCGGCAACAGTTACT+GGG - chr7_2:10432493-10432512 Msa1048670:intron 45.0%
! GAAAGGAGCTCTTTGGGTTT+CGG - chr7_2:10432566-10432585 Msa1048670:intron 45.0%
ACCGTATACGGCTACTTATC+TGG - chr7_2:10432724-10432743 Msa1048670:intron 45.0%
!!! TGATGGTGGGTGGTTTTTGC+TGG + chr7_2:10425256-10425275 None:intergenic 50.0%
! CCCCATAAGTCTAGCTCAGT+TGG - chr7_2:10425811-10425830 Msa1048670:CDS 50.0%
! GTGCCAAACACTGGAAGTGT+CGG - chr7_2:10428592-10428611 Msa1048670:intron 50.0%
!! CAAACACTGGAAGTGTCGGT+CGG - chr7_2:10428596-10428615 Msa1048670:intron 50.0%
CAAAAGAGGGTGATCCTGCA+AGG + chr7_2:10428766-10428785 None:intergenic 50.0%
! CTTGCAGGATCACCCTCTTT+TGG - chr7_2:10428764-10428783 Msa1048670:intron 50.0%
CATTCTCAGGTGTGTGTGTG+TGG + chr7_2:10429194-10429213 None:intergenic 50.0%
AGTCGGAAGAGGCAATGTGA+AGG + chr7_2:10429269-10429288 None:intergenic 50.0%
CACTCCGACCATTCTTCTGT+TGG + chr7_2:10430697-10430716 None:intergenic 50.0%
! GCATGAGTATGTTGGTAGGG+TGG - chr7_2:10430751-10430770 Msa1048670:intron 50.0%
TGGCGTGATTGCGAATTACC+TGG - chr7_2:10430893-10430912 Msa1048670:intron 50.0%
ATACTTCCCTAAGCGTACGG+CGG + chr7_2:10430936-10430955 None:intergenic 50.0%
CAATCAGGGGCAATCATAGG+TGG + chr7_2:10430962-10430981 None:intergenic 50.0%
CACCTATGATTGCCCCTGAT+TGG - chr7_2:10430960-10430979 Msa1048670:intron 50.0%
ACCCAATCAGGGGCAATCAT+AGG + chr7_2:10430965-10430984 None:intergenic 50.0%
!! CATCAACGCTGTTCTGGAGT+GGG + chr7_2:10430993-10431012 None:intergenic 50.0%
!! TCATCAACGCTGTTCTGGAG+TGG + chr7_2:10430994-10431013 None:intergenic 50.0%
CATAGTCAGTGCTTCTCCAG+GGG + chr7_2:10432220-10432239 None:intergenic 50.0%
CCATAGTCAGTGCTTCTCCA+GGG + chr7_2:10432221-10432240 None:intergenic 50.0%
CGTTACGGTCACAGCTGATT+TGG + chr7_2:10432460-10432479 None:intergenic 50.0%
AATCAGCTGTGACCGTAACG+GGG - chr7_2:10432460-10432479 Msa1048670:intron 50.0%
GGGGACAACAGCTATAGTTG+CGG - chr7_2:10432479-10432498 Msa1048670:intron 50.0%
AGTTACTGGGAGAGCAGCTA+TGG - chr7_2:10432506-10432525 Msa1048670:intron 50.0%
TTTCGCGAAGTAGCTGCTAC+TGG + chr7_2:10432550-10432569 None:intergenic 50.0%
AGTAGCAGCTACTTCGCGAA+AGG - chr7_2:10432549-10432568 Msa1048670:intron 50.0%
ACTTCGCGAAAGGAGCTCTT+TGG - chr7_2:10432559-10432578 Msa1048670:intron 50.0%
CTTCGCGAAAGGAGCTCTTT+GGG - chr7_2:10432560-10432579 Msa1048670:intron 50.0%
!! GCGAAATCAGCCGCTGATTT+GGG - chr7_2:10432606-10432625 Msa1048670:intron 50.0%
GTGTTTGGCACCAACACGTG+AGG + chr7_2:10428583-10428602 None:intergenic 55.0%
!! CACGTGTTGGTGCCAAACAC+TGG - chr7_2:10428583-10428602 Msa1048670:intron 55.0%
CGACCGACACTTCCAGTGTT+TGG + chr7_2:10428598-10428617 None:intergenic 55.0%
TGACTTCCGCCGTACGCTTA+GGG - chr7_2:10430927-10430946 Msa1048670:intron 55.0%
GATTGCCCCTGATTGGGTCT+TGG - chr7_2:10430967-10430986 Msa1048670:intron 55.0%
AGTGGGCCAAGACCCAATCA+GGG + chr7_2:10430976-10430995 None:intergenic 55.0%
!! CCCTGGAGAAGCACTGACTA+TGG - chr7_2:10432218-10432237 Msa1048670:intron 55.0%
GCCATAGTCAGTGCTTCTCC+AGG + chr7_2:10432222-10432241 None:intergenic 55.0%
!! AGCACTGACTATGGCCCAAC+AGG - chr7_2:10432227-10432246 Msa1048670:intron 55.0%
! GGCGAAATCAGCCGCTGATT+TGG - chr7_2:10432605-10432624 Msa1048670:intron 55.0%
AACAAAGGGCAAAGCGCGCG+TGG - chr7_2:10427017-10427036 Msa1048670:intron 60.0%
ACAAAGGGCAAAGCGCGCGT+GGG - chr7_2:10427018-10427037 Msa1048670:intron 60.0%
GTGACTTCCGCCGTACGCTT+AGG - chr7_2:10430926-10430945 Msa1048670:intron 60.0%
GTGGGCCAAGACCCAATCAG+GGG + chr7_2:10430975-10430994 None:intergenic 60.0%
GAGTGGGCCAAGACCCAATC+AGG + chr7_2:10430977-10430996 None:intergenic 60.0%
GGGAGAGCAGCTATGGCTGC+TGG - chr7_2:10432513-10432532 Msa1048670:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 10424169 10432965 10424169 ID=Msa1048670;Name=Msa1048670
chr7_2 mRNA 10424169 10432965 10424169 ID=Msa1048670-mRNA-1;Parent=Msa1048670;Name=Msa1048670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|0.8|0.75|0.8|5|318|276
chr7_2 exon 10424169 10424945 10424169 ID=Msa1048670-mRNA-1:exon:2766;Parent=Msa1048670-mRNA-1
chr7_2 exon 10425771 10425887 10425771 ID=Msa1048670-mRNA-1:exon:2765;Parent=Msa1048670-mRNA-1
chr7_2 exon 10426796 10426871 10426796 ID=Msa1048670-mRNA-1:exon:2764;Parent=Msa1048670-mRNA-1
chr7_2 exon 10428104 10428276 10428104 ID=Msa1048670-mRNA-1:exon:2763;Parent=Msa1048670-mRNA-1
chr7_2 exon 10432960 10432965 10432960 ID=Msa1048670-mRNA-1:exon:2762;Parent=Msa1048670-mRNA-1
chr7_2 CDS 10432960 10432965 10432960 ID=Msa1048670-mRNA-1:cds;Parent=Msa1048670-mRNA-1
chr7_2 CDS 10428104 10428276 10428104 ID=Msa1048670-mRNA-1:cds;Parent=Msa1048670-mRNA-1
chr7_2 CDS 10426796 10426871 10426796 ID=Msa1048670-mRNA-1:cds;Parent=Msa1048670-mRNA-1
chr7_2 CDS 10425771 10425887 10425771 ID=Msa1048670-mRNA-1:cds;Parent=Msa1048670-mRNA-1
chr7_2 CDS 10424487 10424945 10424487 ID=Msa1048670-mRNA-1:cds;Parent=Msa1048670-mRNA-1
chr7_2 three_prime_UTR 10424169 10424486 10424169 ID=Msa1048670-mRNA-1:three_prime_utr;Parent=Msa1048670-mRNA-1
Gene Sequence

>Msa1048670

ATGGATGTTGTTGAATCTGGTTCTGTTTTTTCCATCTTCAGAATCTTCAATCAGTTAACAAATATGTATCCCGGTGGCTATACTGCTGAAATCACAAACTTAACCCCAAGAGCGACAGAGAATGATGTGCAGAACTTTTTTGAATACTGTGGTGTAATTGAACGTGTTGATGTGATAAGGTCCAGTGATTATGAGTCTACTGCATATGTGACTTTTAGGGATGCTTATGCCCTGGAAACTGCATTATTGCTGAATGGATCGATGATTTTGGACCAATGCATTTCTATTTCACGCTGGGAAACTTATACAGATGACAGCAATAACTGGAACAATCATACTCCAAACCATGAAGACAGTATAACATACTCACAAGATATGCACATGGACAAGTTTATTTCTTCCCCTGGAGAAGCACTGACTATGGCCCAACAGGTTGTCAAAACAATGGTAGCTAAAGGATTTGTGCTGAGCAAAGATGCATTTGTGATGGCAAAAGCTTTTGATGAATCGCGCAGTGTATCATCTACAGCAGCAAACAAGGTTGCTGAACTCAGCAACAAAATTGGTTTGACTGAAACCATAAATTCAGGCATTGAAAGATTTAAATATGTGGATGAAAACTATCATGTTACAGATATCACCAAATCAGCTGTGACCGTAACGGGGACAACAGCTATAGTTGCGGCAACAGTTACTGGGAGAGCAGCTATGGCTGCTGGTAATGCTATAGCCAGTAGCAGCTACTTCGCGAAAGGAGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCAGCCGCTGATTTGGGTCATCATCAAAACAACTGA

Protein sequence

>Msa1048670

MDVVESGSVFSIFRIFNQLTNMYPGGYTAEITNLTPRATENDVQNFFEYCGVIERVDVIRSSDYESTAYVTFRDAYALETALLLNGSMILDQCISISRWETYTDDSNNWNNHTPNHEDSITYSQDMHMDKFISSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIERFKYVDENYHVTDITKSAVTVTGTTAIVAATVTGRAAMAAGNAIASSSYFAKGALWVSDMLSRAAKSAADLGHHQNN*