AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417910 MtrunA17_Chr3g0115461 98.636 660 9 0 1 660 1 660 0.0 1334
Msa0417910 MtrunA17_Chr5g0425241 76.543 648 142 4 19 658 7 652 0.0 1006
Msa0417910 MtrunA17_Chr3g0124381 62.997 654 220 7 15 657 12 654 0.0 816
Msa0417910 MtrunA17_Chr5g0425251 52.036 663 304 6 3 660 2 655 0.0 688
Msa0417910 MtrunA17_Chr3g0124371 51.946 668 295 11 2 658 6 658 0.0 662
Msa0417910 MtrunA17_Chr3g0115481 51.932 647 286 6 23 652 13 651 0.0 655
Msa0417910 MtrunA17_Chr2g0278931 52.073 603 276 5 52 649 54 648 0.0 607
Msa0417910 MtrunA17_Chr7g0260181 49.308 578 285 3 75 652 65 634 0.0 560
Msa0417910 MtrunA17_Chr2g0331951 48.041 587 295 4 75 660 70 647 0.0 541
Msa0417910 MtrunA17_Chr1g0185231 44.720 644 340 5 17 652 2 637 0.0 540
Msa0417910 MtrunA17_Chr4g0043931 44.623 623 323 7 39 651 22 632 1.80e-178 522
Msa0417910 MtrunA17_Chr4g0004261 46.116 605 318 3 56 660 58 654 4.06e-178 521
Msa0417910 MtrunA17_Chr6g0485191 43.328 577 313 6 77 652 113 676 1.92e-161 480
Msa0417910 MtrunA17_Chr4g0043951 44.050 563 290 7 5 560 3 547 5.12e-155 458
Msa0417910 MtrunA17_Chr7g0222631 36.632 576 338 11 88 655 83 639 2.56e-110 348
Msa0417910 MtrunA17_Chr1g0173031 37.681 345 142 6 70 409 66 342 1.28e-53 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417910 AT5G10180.1 61.852 637 231 4 26 656 46 676 0.0 803
Msa0417910 AT1G77990.1 62.031 640 229 4 20 650 30 664 0.0 779
Msa0417910 AT1G22150.1 52.904 637 277 6 38 659 26 654 0.0 647
Msa0417910 AT1G22150.3 52.904 637 277 6 38 659 26 654 0.0 647
Msa0417910 AT1G22150.4 52.904 637 277 6 38 659 26 654 0.0 647
Msa0417910 AT4G08620.1 52.615 631 276 5 38 652 17 640 0.0 642
Msa0417910 AT1G78000.2 54.200 631 266 6 38 652 22 645 0.0 636
Msa0417910 AT1G78000.1 54.200 631 266 6 38 652 22 645 0.0 636
Msa0417910 AT1G78000.3 54.200 631 266 6 38 652 22 645 0.0 636
Msa0417910 AT1G78000.5 54.392 592 247 6 38 613 22 606 0.0 594
Msa0417910 AT1G22150.2 53.180 566 243 5 38 588 26 584 0.0 582
Msa0417910 AT3G51895.2 45.497 644 337 6 14 652 48 682 0.0 576
Msa0417910 AT3G51895.1 45.497 644 337 6 14 652 3 637 0.0 576
Msa0417910 AT1G78000.4 54.561 570 236 6 38 591 22 584 0.0 573
Msa0417910 AT3G15990.1 46.024 591 309 5 60 649 59 640 0.0 530
Msa0417910 AT1G23090.1 46.827 583 300 5 75 656 51 624 1.03e-175 514
Msa0417910 AT4G02700.1 44.928 621 329 4 37 652 15 627 2.09e-171 504
Msa0417910 AT1G78000.7 57.456 456 187 3 136 591 1 449 3.28e-171 497
Msa0417910 AT1G78000.6 55.992 484 192 4 38 505 22 500 4.67e-167 488
Msa0417910 AT5G19600.1 43.005 579 307 5 77 652 65 623 2.74e-164 486
Msa0417910 AT1G23090.2 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0417910 AT1G23090.3 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0417910 AT1G23090.4 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0417910 AT3G12520.2 33.775 604 384 8 53 655 28 616 2.30e-112 352
Msa0417910 AT3G12520.1 33.775 604 384 8 53 655 44 632 2.48e-112 353
Msa0417910 AT5G13550.1 33.940 604 383 8 53 655 57 645 4.51e-109 345
Msa0417910 AT3G12520.3 34.122 507 318 8 53 558 44 535 5.86e-92 295

Find 159 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATCATCTCATCATTTC+TGG 0.150736 3_2:-65301230 Msa0417910:three_prime_UTR
TAGTAGTTTGACTTTCTTTA+AGG 0.154749 3_2:+65302192 None:intergenic
GCACACTTTGTGGATAAAAT+TGG 0.172279 3_2:-65301615 Msa0417910:CDS
CAAGAGGGTCAATTTGATTT+TGG 0.175928 3_2:+65306830 None:intergenic
TCTATCACCCTACGTTATTT+TGG 0.199361 3_2:+65301326 None:intergenic
GTTGGACAAGCAGCTAAAAT+TGG 0.258087 3_2:-65304835 Msa0417910:CDS
GCAAAACTTGATCCTCAATA+TGG 0.263394 3_2:-65306254 Msa0417910:CDS
ATCTGATGTGGTTTCTGTTT+TGG 0.265706 3_2:-65305679 Msa0417910:CDS
TAAGAGAAGCTTGCTATATA+TGG 0.265917 3_2:-65303787 Msa0417910:CDS
TCAAATCAGTGGACATTTAC+AGG 0.281496 3_2:+65306796 None:intergenic
ATATAACTAATGTTTGAAAA+TGG 0.285502 3_2:-65307038 Msa0417910:five_prime_UTR
TTGTCACATGCTGCACTTGT+AGG 0.290645 3_2:-65305780 Msa0417910:CDS
TTGATGAATGTTGATACTTC+TGG 0.296180 3_2:-65302018 Msa0417910:CDS
TTCCATAGAGGAGGTGGATT+TGG 0.296434 3_2:+65306591 None:intergenic
ATAATCCTCTCTGCACTTCC+AGG 0.304769 3_2:-65303821 Msa0417910:CDS
GTTCACCATTGAGTTGTAAT+TGG 0.307870 3_2:+65304860 None:intergenic
TTGTTTGTATCGGTAGAAAT+TGG 0.326079 3_2:-65303713 Msa0417910:CDS
CACCAAATCCACCTCCTCTA+TGG 0.326646 3_2:-65306593 Msa0417910:CDS
GGTGAATTGAGCTTGGATTA+AGG 0.334344 3_2:+65304881 None:intergenic
GATTGGTCTTCAGCAGCTTA+AGG 0.344368 3_2:-65305733 Msa0417910:CDS
TGGATAAAATTGGGAAAGAA+TGG 0.350661 3_2:-65301605 Msa0417910:CDS
ATTAAAGGATACCATCTAGA+TGG 0.353006 3_2:-65304658 Msa0417910:CDS
CTGAACGTATTTATACTATT+CGG 0.361861 3_2:-65301359 Msa0417910:three_prime_UTR
ATTGGTTAATCTATAAAGTT+GGG 0.372974 3_2:+65306941 None:intergenic
TCTTGTGGCATCTCTTAGAT+TGG 0.377154 3_2:+65306923 None:intergenic
TTTCTTTGTTCCCATCTAGA+TGG 0.377693 3_2:+65304647 None:intergenic
GAGGATTATTGAAGCAAGTA+TGG 0.380145 3_2:+65303835 None:intergenic
TATCTAATGTTTCAGAGTAT+TGG 0.382487 3_2:-65306290 Msa0417910:intron
GAGGGTCCAAGCTGTAATAT+TGG 0.384678 3_2:-65302165 Msa0417910:CDS
AAGAACTTGTTATTCTTAAG+TGG 0.386415 3_2:+65306555 None:intergenic
CGACCTGGGATAGAAGTTCT+TGG 0.386434 3_2:-65302493 Msa0417910:CDS
GATTGGTTAATCTATAAAGT+TGG 0.387949 3_2:+65306940 None:intergenic
CAGCAGCTTAAGGGGTTGCT+TGG 0.391696 3_2:-65305723 Msa0417910:CDS
GCTTAAAGTGGCACACTTTG+TGG 0.393127 3_2:-65301625 Msa0417910:CDS
AGCAGCTTAAGGGGTTGCTT+GGG 0.395989 3_2:-65305722 Msa0417910:CDS
TCACAGAAGGCTTGTGTTGT+TGG 0.396597 3_2:+65302463 None:intergenic
GCTTGCATTGGTGCTTTCTT+CGG 0.396879 3_2:-65303740 Msa0417910:CDS
CACACTTTGTGGATAAAATT+GGG 0.397337 3_2:-65301614 Msa0417910:CDS
GCACAAAGATTATTCTTTGA+AGG 0.402042 3_2:+65306873 None:intergenic
TTTACTGTAACATTATTTGC+TGG 0.407664 3_2:-65305939 Msa0417910:CDS
GAAATGTTAGCAATGGGTTG+TGG 0.411356 3_2:-65304628 Msa0417910:CDS
ATGGGTTGTGGGAACATTGC+AGG 0.411452 3_2:-65304616 Msa0417910:CDS
ATTGGTCTTCAGCAGCTTAA+GGG 0.412152 3_2:-65305732 Msa0417910:CDS
TGCTGCACTTGTAGGATTCA+TGG 0.416473 3_2:-65305772 Msa0417910:CDS
AGAAACCACATCAGATTTGT+TGG 0.419815 3_2:+65305686 None:intergenic
TTTGACTTCCTTGCTTGCAT+TGG 0.419990 3_2:-65303752 Msa0417910:CDS
TAATCATCATGATTTAAATC+TGG 0.422388 3_2:+65305975 None:intergenic
ACTTCATGCTATGTTGCAAC+TGG 0.422888 3_2:-65304586 Msa0417910:intron
TAAAGAAAGTCAAACTACTA+AGG 0.422980 3_2:-65302189 Msa0417910:CDS
AGTTCAAGAGAAATTGCAAT+TGG 0.438871 3_2:-65306053 Msa0417910:CDS
GGTCAGCGAATTTATAAGAT+AGG 0.445238 3_2:+65301547 None:intergenic
CCATAAATCTTGCAAACAAA+AGG 0.446827 3_2:+65305124 None:intergenic
CCTCTTATCTATGCTGTGAT+GGG 0.450706 3_2:-65306077 Msa0417910:CDS
TCTCTTATGTCAATTAATCC+TGG 0.451555 3_2:+65303803 None:intergenic
TACAAGCACTCCAGGCATCT+TGG 0.452819 3_2:-65302419 Msa0417910:CDS
GGATAAAATTGGGAAAGAAT+GGG 0.456057 3_2:-65301604 Msa0417910:CDS
TGTATCATCTCATCATTTCT+GGG 0.458070 3_2:-65301229 Msa0417910:three_prime_UTR
TGTAACAGTGATTCTGTGTT+TGG 0.461750 3_2:-65303894 Msa0417910:CDS
TGTAATTGGTGAATTGAGCT+TGG 0.462279 3_2:+65304874 None:intergenic
CTTCGGTGTCTTGTTTGTAT+CGG 0.463347 3_2:-65303723 Msa0417910:CDS
TCCTCTTATCTATGCTGTGA+TGG 0.465460 3_2:-65306078 Msa0417910:CDS
CTAGGCACGCTGAAGTTTGA+AGG 0.467373 3_2:+65301427 None:intergenic
GTACAATTGGAATTGCATAT+AGG 0.468116 3_2:-65301491 Msa0417910:three_prime_UTR
TGTGAATTACTAGCCACCTT+GGG 0.472725 3_2:+65301649 None:intergenic
ATCAACCACTTTGTGACATA+AGG 0.473180 3_2:+65305998 None:intergenic
AATATGAGAGTAACAGAAGA+TGG 0.473872 3_2:-65306672 Msa0417910:CDS
AAATGTTAGCAATGGGTTGT+GGG 0.484005 3_2:-65304627 Msa0417910:CDS
AACAAAGAAATGTTAGCAAT+GGG 0.485559 3_2:-65304634 Msa0417910:CDS
GCAGGTGCAGCCATCATGAT+TGG 0.487827 3_2:-65305750 Msa0417910:CDS
AAGATACTCATCAAACAGAT+AGG 0.488267 3_2:-65306635 Msa0417910:CDS
GGATTTATGCTCATCTTCAC+AGG 0.493067 3_2:-65306980 Msa0417910:five_prime_UTR
CTCCGGATGGAATTTGATGA+TGG 0.497401 3_2:+65305637 None:intergenic
TTGCAGGTTGGGATTTCTTG+TGG 0.498105 3_2:-65305808 Msa0417910:intron
CCCATCACAGCATAGATAAG+AGG 0.498846 3_2:+65306077 None:intergenic
TTAATCTATAAAGTTGGGAA+TGG 0.499428 3_2:+65306946 None:intergenic
TTACCTTTCTCTTACAACAT+TGG 0.501627 3_2:+65302357 None:intergenic
TGATAGAGAAACTAGTAGAG+TGG 0.503596 3_2:-65301310 Msa0417910:three_prime_UTR
ATAGTAAAACATGTCAAAAG+AGG 0.504882 3_2:-65304904 Msa0417910:CDS
CCCATGGCTACAAGCACTCC+AGG 0.507925 3_2:-65302427 Msa0417910:CDS
AAAGAAAGTCAAACTACTAA+GGG 0.510904 3_2:-65302188 Msa0417910:CDS
CTCCATCATCAAATTCCATC+CGG 0.512952 3_2:-65305639 Msa0417910:CDS
GACACTAGAGGAGCAATAGC+TGG 0.513276 3_2:+65304985 None:intergenic
TACTTCTGGAATTATAGTAC+TGG 0.514900 3_2:-65302004 Msa0417910:CDS
ATGCCAATGTTGTAAGAGAA+AGG 0.517333 3_2:-65302360 Msa0417910:intron
TTGATATTATTATCAGGAGA+TGG 0.519766 3_2:+65301202 None:intergenic
CAACTCAATGGTGAACATGT+TGG 0.525684 3_2:-65304853 Msa0417910:CDS
TTGGTCATTCGTATAAGCTC+TGG 0.525879 3_2:-65302400 Msa0417910:CDS
ATAAGATAGGCATGCTTCCA+CGG 0.526500 3_2:+65301560 None:intergenic
GCCTGGAGTGCTTGTAGCCA+TGG 0.529683 3_2:+65302426 None:intergenic
AGCAGTGACACTACAGCTAC+TGG 0.536402 3_2:+65306029 None:intergenic
GAACAAAGAAATGTTAGCAA+TGG 0.536518 3_2:-65304635 Msa0417910:CDS
ATTCACCAATTACAACTCAA+TGG 0.538027 3_2:-65304865 Msa0417910:CDS
TCGCTGACCCGTGATTTCAC+AGG 0.539593 3_2:-65301533 Msa0417910:exon
TGCTAGCCTAAGCATACCTC+AGG 0.539896 3_2:-65306400 Msa0417910:intron
CCACGGCTTCAGCAACGGTA+AGG 0.544085 3_2:+65301577 None:intergenic
TGCTTCCACGGCTTCAGCAA+CGG 0.546644 3_2:+65301572 None:intergenic
TTGTGAATTACTAGCCACCT+TGG 0.547481 3_2:+65301648 None:intergenic
TGAAGGATGACAAGAAACTC+TGG 0.547722 3_2:+65301444 None:intergenic
AGAAAGCACCAATGCAAGCA+AGG 0.551839 3_2:+65303744 None:intergenic
ATACGAATGACCAAGATGCC+TGG 0.556493 3_2:+65302409 None:intergenic
TATATAATCCAAAATAACGT+AGG 0.559729 3_2:-65301334 Msa0417910:three_prime_UTR
TACCTACACAAGCCATATTG+AGG 0.559998 3_2:+65306242 None:intergenic
TGTTCTAAATGTGTTAAACA+TGG 0.561709 3_2:+65301078 None:intergenic
TTGGTCTTCAGCAGCTTAAG+GGG 0.565521 3_2:-65305731 Msa0417910:CDS
TTAAAGGATACCATCTAGAT+GGG 0.565733 3_2:-65304657 Msa0417910:CDS
AAAGTACTTACTTCTCCGGA+TGG 0.566401 3_2:+65305624 None:intergenic
ATCAGTATCAAATATTGTGA+TGG 0.566934 3_2:-65303918 Msa0417910:CDS
CTACCAAGAACTTCTATCCC+AGG 0.571095 3_2:+65302490 None:intergenic
TTGGGAAGCATAAATAGAGA+GGG 0.574818 3_2:-65307003 Msa0417910:five_prime_UTR
TACTGGAGGAACTGCACAAG+AGG 0.577069 3_2:-65301987 Msa0417910:CDS
CAGGACTAGATTTGTCAAGA+GGG 0.578549 3_2:+65306815 None:intergenic
AGTAATTCACAAGCTTAAAG+TGG 0.582837 3_2:-65301637 Msa0417910:CDS
CACAAGAGGTTGCTCTCCCG+TGG 0.584272 3_2:-65301973 Msa0417910:CDS
TCATGTCCAATATTACAGCT+TGG 0.587216 3_2:+65302159 None:intergenic
ATTGGGAAGCATAAATAGAG+AGG 0.587279 3_2:-65307004 Msa0417910:five_prime_UTR
CTCATATTGAAAGCATCAGA+GGG 0.587529 3_2:+65306687 None:intergenic
ACAGGACTAGATTTGTCAAG+AGG 0.588059 3_2:+65306814 None:intergenic
ATATAATCCAAAATAACGTA+GGG 0.591078 3_2:-65301333 Msa0417910:three_prime_UTR
TATATACCTGAGGTATGCTT+AGG 0.597660 3_2:+65306394 None:intergenic
CTCTTATCTATGCTGTGATG+GGG 0.597838 3_2:-65306076 Msa0417910:CDS
TTATAGGAAGCAATGGCTGT+TGG 0.598367 3_2:-65304697 Msa0417910:intron
TCTCATATTGAAAGCATCAG+AGG 0.599209 3_2:+65306686 None:intergenic
ATCTTCCTTATGTCACAAAG+TGG 0.602945 3_2:-65306003 Msa0417910:CDS
CTTCACCAACAAATCTGATG+TGG 0.603053 3_2:-65305691 Msa0417910:CDS
ATTGTTCCAGAATACTCAAG+TGG 0.606100 3_2:-65302232 Msa0417910:intron
TTCTGGAATTATAGTACTGG+AGG 0.606870 3_2:-65302001 Msa0417910:CDS
CCTTACCGTTGCTGAAGCCG+TGG 0.611588 3_2:-65301577 Msa0417910:CDS
GAAGGCTATGTATGACTGAG+AGG 0.611649 3_2:+65306891 None:intergenic
AAAGTCAAACTACTAAGGGG+AGG 0.612648 3_2:-65302184 Msa0417910:CDS
CATGTCAATTGTCAAATCAG+TGG 0.615503 3_2:+65306785 None:intergenic
CTTCCAATGACAAAATTCAG+AGG 0.616131 3_2:+65305162 None:intergenic
AAGTCAAACTACTAAGGGGA+GGG 0.616401 3_2:-65302183 Msa0417910:CDS
TGTCAATATATGTCTCCGAT+CGG 0.616791 3_2:-65301254 Msa0417910:three_prime_UTR
ATGAGATGATACAATCCGAT+CGG 0.617531 3_2:+65301239 None:intergenic
CCTGGAGTGCTTGTAGCCAT+GGG 0.620616 3_2:+65302427 None:intergenic
AAAACGACCTGTGAAATCAC+GGG 0.620959 3_2:+65301526 None:intergenic
TGATGTTAGTCAATATCCCA+TGG 0.624539 3_2:-65302443 Msa0417910:CDS
ATTGAAGCAAGTATGGCCAC+AGG 0.625560 3_2:+65303842 None:intergenic
TTGTTCCAGAATACTCAAGT+GGG 0.625900 3_2:-65302231 Msa0417910:intron
GGGAAGCATAAATAGAGAGG+GGG 0.626642 3_2:-65307001 Msa0417910:five_prime_UTR
TTTGGATAATTGCTTGAAAG+GGG 0.629225 3_2:+65306848 None:intergenic
GCACTTGTAGGATTCATGGC+AGG 0.636916 3_2:-65305768 Msa0417910:CDS
TGGGAAGCATAAATAGAGAG+GGG 0.638485 3_2:-65307002 Msa0417910:five_prime_UTR
TTCCAATGACAAAATTCAGA+GGG 0.638852 3_2:+65305163 None:intergenic
ATATTGACTAACATCACAGA+AGG 0.640670 3_2:+65302450 None:intergenic
GAGAGGATACTTGTGTCTTG+TGG 0.649818 3_2:+65306908 None:intergenic
GTAATACAATCAATTCGACC+TGG 0.650323 3_2:-65302508 Msa0417910:CDS
CTGCTGAAGACCAATCATGA+TGG 0.650508 3_2:+65305740 None:intergenic
ATCACAGCATAGATAAGAGG+AGG 0.652330 3_2:+65306080 None:intergenic
TAATACAATCAATTCGACCT+GGG 0.657689 3_2:-65302507 Msa0417910:CDS
AAGAAAGTCAAACTACTAAG+GGG 0.662851 3_2:-65302187 Msa0417910:CDS
TTGGTCTTCAGACACAAGTG+TGG 0.667826 3_2:-65306105 Msa0417910:intron
TGTGTTTGGAATTGTTCACA+AGG 0.669909 3_2:-65303880 Msa0417910:CDS
GATAATATAACTGACACTAG+AGG 0.681566 3_2:+65304973 None:intergenic
TTGCTATGGTGAACCCAAGG+TGG 0.691691 3_2:-65301662 Msa0417910:CDS
AGTTTGCTATGGTGAACCCA+AGG 0.691933 3_2:-65301665 Msa0417910:CDS
GCTGTTATATTACACACCTG+TGG 0.711496 3_2:-65303858 Msa0417910:CDS
ATCAAACAGATAGGACACAG+TGG 0.745524 3_2:-65306626 Msa0417910:CDS
TTAATCCTGGAAGTGCAGAG+AGG 0.761072 3_2:+65303816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATTATTTATTTGAT+TGG - chr3_2:65302001-65302020 Msa0417910:CDS 10.0%
!!! AAGAAATTCTAATAATTTTT+TGG + chr3_2:65302868-65302887 None:intergenic 10.0%
!!! TAAGAAATGAAATATATTTT+TGG - chr3_2:65303024-65303043 Msa0417910:intron 10.0%
!!! TATTTTATTTGTTTTATAGT+TGG - chr3_2:65304116-65304135 Msa0417910:intron 10.0%
!!! ATAATTTTGTTTTCAAAAAT+TGG - chr3_2:65304534-65304553 Msa0417910:intron 10.0%
!! CATAAAATGTTAATTAATTT+AGG + chr3_2:65304969-65304988 None:intergenic 10.0%
!!! CTAAATTAATTAACATTTTA+TGG - chr3_2:65304967-65304986 Msa0417910:CDS 10.0%
!!! TTATTTATTTATTTTTTGAC+AGG - chr3_2:65305034-65305053 Msa0417910:intron 10.0%
!!! ATTTTTTATTTTTTTAGAGT+TGG + chr3_2:65305391-65305410 None:intergenic 10.0%
!! AATATATCTAAATGAAAATT+TGG - chr3_2:65305562-65305581 Msa0417910:intron 10.0%
!!! ATACATATAGATTTTATTAA+AGG - chr3_2:65306331-65306350 Msa0417910:intron 10.0%
!! ATATAACTAATGTTTGAAAA+TGG - chr3_2:65301087-65301106 Msa0417910:three_prime_UTR 15.0%
!!! TACTTTTTTTTTTCATTTTC+TGG - chr3_2:65302518-65302537 Msa0417910:CDS 15.0%
!!! ACTTTTTTTTTTCATTTTCT+GGG - chr3_2:65302519-65302538 Msa0417910:CDS 15.0%
!! TAAAGACAATTAACAAAAAA+GGG - chr3_2:65302739-65302758 Msa0417910:intron 15.0%
!!! GAAAATAACAGTATATTTTT+AGG - chr3_2:65302839-65302858 Msa0417910:intron 15.0%
!! ATATTGTTCAAGTAAAAATT+TGG + chr3_2:65303057-65303076 None:intergenic 15.0%
!!! TTTAGTTTCTAAAAATTTTG+AGG - chr3_2:65303392-65303411 Msa0417910:intron 15.0%
!!! AAAAATTTTGAGGTTTAATT+TGG - chr3_2:65303402-65303421 Msa0417910:intron 15.0%
!!! AAAATTTTGAGGTTTAATTT+GGG - chr3_2:65303403-65303422 Msa0417910:intron 15.0%
!!! GATCTACTTTTATTTATTTT+AGG + chr3_2:65303654-65303673 None:intergenic 15.0%
!! TTCTAAACATATATGAAAAT+AGG + chr3_2:65304495-65304514 None:intergenic 15.0%
!! ACTTTAACCAATAAATTAAA+CGG - chr3_2:65304659-65304678 Msa0417910:CDS 15.0%
!! AACGAAATTATTGATATTTA+TGG - chr3_2:65304924-65304943 Msa0417910:CDS 15.0%
!! ACGAAATTATTGATATTTAT+GGG - chr3_2:65304925-65304944 Msa0417910:CDS 15.0%
!!! CTATTATTGAAGTTAATTTT+TGG - chr3_2:65305358-65305377 Msa0417910:intron 15.0%
!!! ATTTTATTAAAGGAAAATTG+TGG - chr3_2:65306341-65306360 Msa0417910:intron 15.0%
!!! TTTCTTTTGATATTATTATC+AGG + chr3_2:65306932-65306951 None:intergenic 15.0%
!! AAAATGGAAAAAGCAATAAT+TGG - chr3_2:65301103-65301122 Msa0417910:three_prime_UTR 20.0%
!! AAATGGAAAAAGCAATAATT+GGG - chr3_2:65301104-65301123 Msa0417910:three_prime_UTR 20.0%
!! ATTGGTTAATCTATAAAGTT+GGG + chr3_2:65301187-65301206 None:intergenic 20.0%
!! TAATCATCATGATTTAAATC+TGG + chr3_2:65302153-65302172 None:intergenic 20.0%
!! AGATAATTAACAGTTAAATG+AGG + chr3_2:65302257-65302276 None:intergenic 20.0%
!!! AATTTAATTTAATCTGTTGC+AGG - chr3_2:65302301-65302320 Msa0417910:intron 20.0%
!! GTAAAGACAATTAACAAAAA+AGG - chr3_2:65302738-65302757 Msa0417910:intron 20.0%
!!! ATATACTGTTATTTTCAACT+AGG + chr3_2:65302835-65302854 None:intergenic 20.0%
!!! AAGTATTCATCATGTTTTTT+CGG + chr3_2:65304041-65304060 None:intergenic 20.0%
!! AACATATATGAAAATAGGTT+GGG + chr3_2:65304490-65304509 None:intergenic 20.0%
!! AAACATATATGAAAATAGGT+TGG + chr3_2:65304491-65304510 None:intergenic 20.0%
!!! AGTTTAACTTAATAGATTCA+AGG + chr3_2:65304642-65304661 None:intergenic 20.0%
!! CTTTAACCAATAAATTAAAC+GGG - chr3_2:65304660-65304679 Msa0417910:CDS 20.0%
!! AAAGTCTAAAAATGAAATTC+TGG + chr3_2:65304715-65304734 None:intergenic 20.0%
!!! TTTTTACCAATAATTTTGAC+CGG + chr3_2:65305144-65305163 None:intergenic 20.0%
!! AATTATTGGTAAAAAGACAA+AGG - chr3_2:65305149-65305168 Msa0417910:CDS 20.0%
!!! AAATGAAAATTTGGTTTTGT+AGG - chr3_2:65305571-65305590 Msa0417910:intron 20.0%
!! TCTATCAAAGAAATTGTATA+CGG + chr3_2:65306086-65306105 None:intergenic 20.0%
!!! TTTTATCTGTAATGTACAAT+TGG - chr3_2:65306621-65306640 Msa0417910:CDS 20.0%
!!! TCCATAAACTCTTATTTTTT+CGG + chr3_2:65306740-65306759 None:intergenic 20.0%
!! TATATAATCCAAAATAACGT+AGG - chr3_2:65306791-65306810 Msa0417910:five_prime_UTR 20.0%
!! ATATAATCCAAAATAACGTA+GGG - chr3_2:65306792-65306811 Msa0417910:five_prime_UTR 20.0%
!! TAATATCAAAAGAAAAAAGC+AGG - chr3_2:65306937-65306956 Msa0417910:five_prime_UTR 20.0%
!! AAAAACTTACTTACATATTG+AGG - chr3_2:65306992-65307011 Msa0417910:five_prime_UTR 20.0%
! TTAATCTATAAAGTTGGGAA+TGG + chr3_2:65301182-65301201 None:intergenic 25.0%
!! GATTGGTTAATCTATAAAGT+TGG + chr3_2:65301188-65301207 None:intergenic 25.0%
!! TTTTGGATAATTGCTTGAAA+GGG + chr3_2:65301281-65301300 None:intergenic 25.0%
!! ATTTTGGATAATTGCTTGAA+AGG + chr3_2:65301282-65301301 None:intergenic 25.0%
!!! TCATTTTTGTTGAAGTGTTT+GGG + chr3_2:65301410-65301429 None:intergenic 25.0%
!!! GTAATTAGTTTTTTCCATAG+AGG + chr3_2:65301549-65301568 None:intergenic 25.0%
!!! AAGAACTTGTTATTCTTAAG+TGG + chr3_2:65301573-65301592 None:intergenic 25.0%
! AGAAAGAAAAAACATGTTCA+TGG + chr3_2:65301620-65301639 None:intergenic 25.0%
!!! CATGTTTTTTCTTTCTTTAG+TGG - chr3_2:65301624-65301643 Msa0417910:CDS 25.0%
!! TTTTTGAACAAGCTAAGTAT+TGG + chr3_2:65301657-65301676 None:intergenic 25.0%
!!! TTTAAAGATGATTTTCTAGC+AGG - chr3_2:65301693-65301712 Msa0417910:intron 25.0%
! TATTTGTGAATATATACCTG+AGG + chr3_2:65301744-65301763 None:intergenic 25.0%
!! TATTTATGCATCTGAAACAT+TGG + chr3_2:65301785-65301804 None:intergenic 25.0%
! TATCTAATGTTTCAGAGTAT+TGG - chr3_2:65301835-65301854 Msa0417910:intron 25.0%
! TTTACTGTAACATTATTTGC+TGG - chr3_2:65302186-65302205 Msa0417910:CDS 25.0%
!!! AAAAAAAGTACTTACTTCTC+CGG + chr3_2:65302508-65302527 None:intergenic 25.0%
! AAGACTGAGATTAACAAAAA+AGG - chr3_2:65302703-65302722 Msa0417910:intron 25.0%
! AGACTGAGATTAACAAAAAA+GGG - chr3_2:65302704-65302723 Msa0417910:intron 25.0%
!! GGGTCATAAATTGTAAATTT+TGG - chr3_2:65302759-65302778 Msa0417910:intron 25.0%
! CAAGGTAAGATAAACATATT+AGG - chr3_2:65302803-65302822 Msa0417910:intron 25.0%
! TAAGATAAACATATTAGGCT+CGG - chr3_2:65302808-65302827 Msa0417910:intron 25.0%
! TTTGTCTATTATATTGACAG+TGG - chr3_2:65302937-65302956 Msa0417910:intron 25.0%
!! TTTGAGTTTCTGATTATTTC+AGG - chr3_2:65303088-65303107 Msa0417910:intron 25.0%
! TTGAGTTTCTGATTATTTCA+GGG - chr3_2:65303089-65303108 Msa0417910:intron 25.0%
!! AAAGAAACAAAAAGCTTTTC+TGG - chr3_2:65303114-65303133 Msa0417910:intron 25.0%
! ATATCCAAAGCAGATAAAAA+TGG - chr3_2:65303191-65303210 Msa0417910:intron 25.0%
! TATCCAAAGCAGATAAAAAT+GGG - chr3_2:65303192-65303211 Msa0417910:intron 25.0%
! ATAGTAAAACATGTCAAAAG+AGG - chr3_2:65303221-65303240 Msa0417910:intron 25.0%
!!! AGGTTTAATTTGGGTTTTAT+AGG - chr3_2:65303412-65303431 Msa0417910:intron 25.0%
!! AGATCTTTTGCTTCAATTAA+AGG - chr3_2:65303452-65303471 Msa0417910:intron 25.0%
! AACAAAGAAATGTTAGCAAT+GGG - chr3_2:65303491-65303510 Msa0417910:intron 25.0%
!! ATTATTCTAGAAGTGAATTC+TGG + chr3_2:65303698-65303717 None:intergenic 25.0%
!! GAGCAAAAAAAAACTTTTGT+TGG + chr3_2:65303798-65303817 None:intergenic 25.0%
! TCATATTGCTGAAGTATAAA+TGG - chr3_2:65303948-65303967 Msa0417910:CDS 25.0%
!!! AATTGAACCAGTCATTTTTA+GGG + chr3_2:65303999-65304018 None:intergenic 25.0%
!!! AAATTGAACCAGTCATTTTT+AGG + chr3_2:65304000-65304019 None:intergenic 25.0%
!! TTTCGGTGATTAATTTTTGT+CGG + chr3_2:65304024-65304043 None:intergenic 25.0%
! TTTAATTCTTAAACACTTGC+AGG - chr3_2:65304139-65304158 Msa0417910:intron 25.0%
! ATCAGTATCAAATATTGTGA+TGG - chr3_2:65304207-65304226 Msa0417910:intron 25.0%
!!! TGTTTGGGAATTTTAAGAAA+AGG + chr3_2:65304464-65304483 None:intergenic 25.0%
! TCTTAAACATGTGTGTAAAA+TGG + chr3_2:65304603-65304622 None:intergenic 25.0%
!! AAGTAACCCGTTTAATTTAT+TGG + chr3_2:65304669-65304688 None:intergenic 25.0%
!! TGTCGATGGAAAATATTTTA+AGG + chr3_2:65304801-65304820 None:intergenic 25.0%
! AAAATTTACGTCTGTATTTG+TGG - chr3_2:65304836-65304855 Msa0417910:CDS 25.0%
! AGAGTAAAGAAAAACATTAC+AGG - chr3_2:65304868-65304887 Msa0417910:CDS 25.0%
! ACTTTACCAATACTTATCAT+GGG - chr3_2:65305089-65305108 Msa0417910:intron 25.0%
! ATAATACCGGTCAAAATTAT+TGG - chr3_2:65305135-65305154 Msa0417910:CDS 25.0%
! AAGAAGTTAGAACTAATGAA+TGG - chr3_2:65305184-65305203 Msa0417910:intron 25.0%
! AGAAGTTAGAACTAATGAAT+GGG - chr3_2:65305185-65305204 Msa0417910:intron 25.0%
! TATATTATGGTCCACATATA+TGG - chr3_2:65305312-65305331 Msa0417910:intron 25.0%
!! TTTTTCTTCGAATTAAAGTC+TGG - chr3_2:65305428-65305447 Msa0417910:intron 25.0%
!!! GATTATGCCATATATTTTTG+CGG + chr3_2:65305474-65305493 None:intergenic 25.0%
!! TAGTAGTTTGACTTTCTTTA+AGG + chr3_2:65305936-65305955 None:intergenic 25.0%
! TAAAGAAAGTCAAACTACTA+AGG - chr3_2:65305936-65305955 Msa0417910:CDS 25.0%
! AAAGAAAGTCAAACTACTAA+GGG - chr3_2:65305937-65305956 Msa0417910:CDS 25.0%
! CAAATATGTTACAACATGTT+CGG - chr3_2:65306255-65306274 Msa0417910:CDS 25.0%
! TAGCAAACTGCAAAAATAAA+TGG + chr3_2:65306449-65306468 None:intergenic 25.0%
!!! TTTATTTTTGCAGTTTGCTA+TGG - chr3_2:65306449-65306468 Msa0417910:CDS 25.0%
!!! GGATTTTAGAATTCAAAACT+AGG + chr3_2:65306719-65306738 None:intergenic 25.0%
! TCCGAAAAAATAAGAGTTTA+TGG - chr3_2:65306736-65306755 Msa0417910:five_prime_UTR 25.0%
! GAAAAAATAAGAGTTTATGG+AGG - chr3_2:65306739-65306758 Msa0417910:five_prime_UTR 25.0%
! CTGAACGTATTTATACTATT+CGG - chr3_2:65306766-65306785 Msa0417910:five_prime_UTR 25.0%
! TTGATATTATTATCAGGAGA+TGG + chr3_2:65306926-65306945 None:intergenic 25.0%
GCACAAAGATTATTCTTTGA+AGG + chr3_2:65301255-65301274 None:intergenic 30.0%
TTTGGATAATTGCTTGAAAG+GGG + chr3_2:65301280-65301299 None:intergenic 30.0%
!! CTCATTTTTGTTGAAGTGTT+TGG + chr3_2:65301411-65301430 None:intergenic 30.0%
AATATGAGAGTAACAGAAGA+TGG - chr3_2:65301453-65301472 Msa0417910:three_prime_UTR 30.0%
AAGATACTCATCAAACAGAT+AGG - chr3_2:65301490-65301509 Msa0417910:three_prime_UTR 30.0%
!!! ATTAGTTTTTTCCATAGAGG+AGG + chr3_2:65301546-65301565 None:intergenic 30.0%
AGTTCAAGAGAAATTGCAAT+TGG - chr3_2:65302072-65302091 Msa0417910:intron 30.0%
!!! GGAATTTTTCAAGTTGCATT+TGG - chr3_2:65302207-65302226 Msa0417910:CDS 30.0%
TAATTTAATCTGTTGCAGGT+TGG - chr3_2:65302305-65302324 Msa0417910:intron 30.0%
AATTTAATCTGTTGCAGGTT+GGG - chr3_2:65302306-65302325 Msa0417910:intron 30.0%
CGAAAGTAGAAACATATTTG+AGG - chr3_2:65302648-65302667 Msa0417910:intron 30.0%
!!! GAACTGTTTTTTGTTTGACA+AGG - chr3_2:65302785-65302804 Msa0417910:intron 30.0%
AAGATAAACATATTAGGCTC+GGG - chr3_2:65302809-65302828 Msa0417910:intron 30.0%
TTCCAATGACAAAATTCAGA+GGG + chr3_2:65302965-65302984 None:intergenic 30.0%
CCATAAATCTTGCAAACAAA+AGG + chr3_2:65303004-65303023 None:intergenic 30.0%
!! CCTTTTGTTTGCAAGATTTA+TGG - chr3_2:65303001-65303020 Msa0417910:intron 30.0%
GATAATATAACTGACACTAG+AGG + chr3_2:65303155-65303174 None:intergenic 30.0%
ATCCAAAGCAGATAAAAATG+GGG - chr3_2:65303193-65303212 Msa0417910:intron 30.0%
ATTCACCAATTACAACTCAA+TGG - chr3_2:65303260-65303279 Msa0417910:intron 30.0%
ATTAAAGGATACCATCTAGA+TGG - chr3_2:65303467-65303486 Msa0417910:intron 30.0%
TTAAAGGATACCATCTAGAT+GGG - chr3_2:65303468-65303487 Msa0417910:intron 30.0%
GAACAAAGAAATGTTAGCAA+TGG - chr3_2:65303490-65303509 Msa0417910:intron 30.0%
!!! TGAATTCTGGTTTTCTTCTT+GGG + chr3_2:65303685-65303704 None:intergenic 30.0%
!! TTTTGTTGGCACTTTTTGTT+AGG + chr3_2:65303784-65303803 None:intergenic 30.0%
AAATCAAAAGCTACGTTATG+TGG - chr3_2:65303869-65303888 Msa0417910:CDS 30.0%
TCTCTTATGTCAATTAATCC+TGG + chr3_2:65304325-65304344 None:intergenic 30.0%
!! TAAGAGAAGCTTGCTATATA+TGG - chr3_2:65304338-65304357 Msa0417910:intron 30.0%
! TTGTTTGTATCGGTAGAAAT+TGG - chr3_2:65304412-65304431 Msa0417910:intron 30.0%
! TACAGACGTAAATTTTTGCA+AGG + chr3_2:65304832-65304851 None:intergenic 30.0%
!! CATGATAAGTATTGGTAAAG+TGG + chr3_2:65305090-65305109 None:intergenic 30.0%
CACTTTACCAATACTTATCA+TGG - chr3_2:65305088-65305107 Msa0417910:intron 30.0%
CTTTACCAATACTTATCATG+GGG - chr3_2:65305090-65305109 Msa0417910:intron 30.0%
ATCCACTAGTGTAATAATAC+CGG - chr3_2:65305122-65305141 Msa0417910:intron 30.0%
!!! CTAATGAATGGGTTATTTTG+TGG - chr3_2:65305196-65305215 Msa0417910:intron 30.0%
AAGTGAGTTCCATCATAATT+TGG - chr3_2:65305231-65305250 Msa0417910:intron 30.0%
AAATCCATGCCAAATTATGA+TGG + chr3_2:65305243-65305262 None:intergenic 30.0%
CATAATATATTCTACTGGAG+AGG + chr3_2:65305301-65305320 None:intergenic 30.0%
CTCTCCAGTAGAATATATTA+TGG - chr3_2:65305299-65305318 Msa0417910:intron 30.0%
TGGACCATAATATATTCTAC+TGG + chr3_2:65305306-65305325 None:intergenic 30.0%
TGTATATGAGACCATATATG+TGG + chr3_2:65305326-65305345 None:intergenic 30.0%
GCTAAAACCGCAAAAATATA+TGG - chr3_2:65305464-65305483 Msa0417910:intron 30.0%
GCATAATCTCTTCGAATAAA+AGG - chr3_2:65305486-65305505 Msa0417910:intron 30.0%
TAATACAATCAATTCGACCT+GGG - chr3_2:65305618-65305637 Msa0417910:intron 30.0%
! ATATTGACTAACATCACAGA+AGG + chr3_2:65305678-65305697 None:intergenic 30.0%
TTACCTTTCTCTTACAACAT+TGG + chr3_2:65305771-65305790 None:intergenic 30.0%
AAGAAAGTCAAACTACTAAG+GGG - chr3_2:65305938-65305957 Msa0417910:CDS 30.0%
TTGATGAATGTTGATACTTC+TGG - chr3_2:65306107-65306126 Msa0417910:intron 30.0%
!! TACTTCTGGAATTATAGTAC+TGG - chr3_2:65306121-65306140 Msa0417910:intron 30.0%
TTACAACATGTTCGGATTAA+TGG - chr3_2:65306263-65306282 Msa0417910:CDS 30.0%
TTCGGATTAATGGTTAGATT+TGG - chr3_2:65306273-65306292 Msa0417910:CDS 30.0%
AGTAATTCACAAGCTTAAAG+TGG - chr3_2:65306488-65306507 Msa0417910:CDS 30.0%
CACACTTTGTGGATAAAATT+GGG - chr3_2:65306511-65306530 Msa0417910:CDS 30.0%
TGGATAAAATTGGGAAAGAA+TGG - chr3_2:65306520-65306539 Msa0417910:CDS 30.0%
GGATAAAATTGGGAAAGAAT+GGG - chr3_2:65306521-65306540 Msa0417910:CDS 30.0%
GTACAATTGGAATTGCATAT+AGG - chr3_2:65306634-65306653 Msa0417910:CDS 30.0%
TTGTATCATCTCATCATTTC+TGG - chr3_2:65306895-65306914 Msa0417910:five_prime_UTR 30.0%
TGTATCATCTCATCATTTCT+GGG - chr3_2:65306896-65306915 Msa0417910:five_prime_UTR 30.0%
! ATTGGGAAGCATAAATAGAG+AGG - chr3_2:65301121-65301140 Msa0417910:three_prime_UTR 35.0%
! TTGGGAAGCATAAATAGAGA+GGG - chr3_2:65301122-65301141 Msa0417910:three_prime_UTR 35.0%
!! CAAGAGGGTCAATTTGATTT+TGG + chr3_2:65301298-65301317 None:intergenic 35.0%
TCAAATCAGTGGACATTTAC+AGG + chr3_2:65301332-65301351 None:intergenic 35.0%
CATGTCAATTGTCAAATCAG+TGG + chr3_2:65301343-65301362 None:intergenic 35.0%
!! CTCATATTGAAAGCATCAGA+GGG + chr3_2:65301441-65301460 None:intergenic 35.0%
!! TCTCATATTGAAAGCATCAG+AGG + chr3_2:65301442-65301461 None:intergenic 35.0%
! TTCATGGCAAGTTCTTTTCT+TGG + chr3_2:65301604-65301623 None:intergenic 35.0%
TATATACCTGAGGTATGCTT+AGG + chr3_2:65301734-65301753 None:intergenic 35.0%
GCAAAACTTGATCCTCAATA+TGG - chr3_2:65301871-65301890 Msa0417910:intron 35.0%
ATCTTCCTTATGTCACAAAG+TGG - chr3_2:65302122-65302141 Msa0417910:intron 35.0%
ATCAACCACTTTGTGACATA+AGG + chr3_2:65302130-65302149 None:intergenic 35.0%
!! AAGTTGCATTTGGAGTTTTC+AGG - chr3_2:65302217-65302236 Msa0417910:CDS 35.0%
AGAAACCACATCAGATTTGT+TGG + chr3_2:65302442-65302461 None:intergenic 35.0%
! ATCTGATGTGGTTTCTGTTT+TGG - chr3_2:65302446-65302465 Msa0417910:CDS 35.0%
ACTAACAAAGAACACACTCA+AGG + chr3_2:65302602-65302621 None:intergenic 35.0%
GTTCTTTGTTAGTAAACTCG+TGG - chr3_2:65302609-65302628 Msa0417910:intron 35.0%
AAAACTCACATAACATGGGT+GGG + chr3_2:65302896-65302915 None:intergenic 35.0%
CAGCAAAACTCACATAACAT+GGG + chr3_2:65302900-65302919 None:intergenic 35.0%
TCAGCAAAACTCACATAACA+TGG + chr3_2:65302901-65302920 None:intergenic 35.0%
! TACCCTCTGAATTTTGTCAT+TGG - chr3_2:65302960-65302979 Msa0417910:intron 35.0%
CTTCCAATGACAAAATTCAG+AGG + chr3_2:65302966-65302985 None:intergenic 35.0%
!! AACCCCATTTTTATCTGCTT+TGG + chr3_2:65303198-65303217 None:intergenic 35.0%
TGTAATTGGTGAATTGAGCT+TGG + chr3_2:65303254-65303273 None:intergenic 35.0%
! GTTCACCATTGAGTTGTAAT+TGG + chr3_2:65303268-65303287 None:intergenic 35.0%
!! TTGGGTTTTATAGGAAGCAA+TGG - chr3_2:65303421-65303440 Msa0417910:intron 35.0%
TTTCTTTGTTCCCATCTAGA+TGG + chr3_2:65303481-65303500 None:intergenic 35.0%
!! AAATGTTAGCAATGGGTTGT+GGG - chr3_2:65303498-65303517 Msa0417910:intron 35.0%
!!! GTGAATTCTGGTTTTCTTCT+TGG + chr3_2:65303686-65303705 None:intergenic 35.0%
TTGTGTATTTAGATGTCCGA+TGG + chr3_2:65303927-65303946 None:intergenic 35.0%
ATGGAATCAACCTTCTTAAG+CGG - chr3_2:65303967-65303986 Msa0417910:CDS 35.0%
GAGATTTCCCTAAAAATGAC+TGG - chr3_2:65303989-65304008 Msa0417910:intron 35.0%
TGTAACAGTGATTCTGTGTT+TGG - chr3_2:65304231-65304250 Msa0417910:intron 35.0%
! TGTGTTTGGAATTGTTCACA+AGG - chr3_2:65304245-65304264 Msa0417910:intron 35.0%
GAGGATTATTGAAGCAAGTA+TGG + chr3_2:65304293-65304312 None:intergenic 35.0%
! AAATAGGTTGGGTTGTGTTT+GGG + chr3_2:65304479-65304498 None:intergenic 35.0%
! AAAATAGGTTGGGTTGTGTT+TGG + chr3_2:65304480-65304499 None:intergenic 35.0%
CTTAATAGATTCAAGGTACG+TGG + chr3_2:65304635-65304654 None:intergenic 35.0%
AAAGACAAAGGAAGCTGAAT+AGG - chr3_2:65305161-65305180 Msa0417910:CDS 35.0%
! TATGATGGAACTCACTTGTT+AGG + chr3_2:65305228-65305247 None:intergenic 35.0%
AGTTCCATCATAATTTGGCA+TGG - chr3_2:65305236-65305255 Msa0417910:intron 35.0%
GTAATACAATCAATTCGACC+TGG - chr3_2:65305617-65305636 Msa0417910:intron 35.0%
TGATGTTAGTCAATATCCCA+TGG - chr3_2:65305682-65305701 Msa0417910:CDS 35.0%
ATGCCAATGTTGTAAGAGAA+AGG - chr3_2:65305765-65305784 Msa0417910:CDS 35.0%
ATTGTTCCAGAATACTCAAG+TGG - chr3_2:65305893-65305912 Msa0417910:intron 35.0%
TTGTTCCAGAATACTCAAGT+GGG - chr3_2:65305894-65305913 Msa0417910:intron 35.0%
TCATGTCCAATATTACAGCT+TGG + chr3_2:65305969-65305988 None:intergenic 35.0%
!! TTCTGGAATTATAGTACTGG+AGG - chr3_2:65306124-65306143 Msa0417910:intron 35.0%
GCACACTTTGTGGATAAAAT+TGG - chr3_2:65306510-65306529 Msa0417910:CDS 35.0%
GGTCAGCGAATTTATAAGAT+AGG + chr3_2:65306581-65306600 None:intergenic 35.0%
AAAAACGACCTGTGAAATCA+CGG + chr3_2:65306603-65306622 None:intergenic 35.0%
! TCTATCACCCTACGTTATTT+TGG + chr3_2:65306802-65306821 None:intergenic 35.0%
TGATAGAGAAACTAGTAGAG+TGG - chr3_2:65306815-65306834 Msa0417910:five_prime_UTR 35.0%
TGTCAATATATGTCTCCGAT+CGG - chr3_2:65306871-65306890 Msa0417910:five_prime_UTR 35.0%
ATGAGATGATACAATCCGAT+CGG + chr3_2:65306889-65306908 None:intergenic 35.0%
! TGGGAAGCATAAATAGAGAG+GGG - chr3_2:65301123-65301142 Msa0417910:three_prime_UTR 40.0%
GGATTTATGCTCATCTTCAC+AGG - chr3_2:65301145-65301164 Msa0417910:three_prime_UTR 40.0%
TCTTGTGGCATCTCTTAGAT+TGG + chr3_2:65301205-65301224 None:intergenic 40.0%
CAGGACTAGATTTGTCAAGA+GGG + chr3_2:65301313-65301332 None:intergenic 40.0%
ACAGGACTAGATTTGTCAAG+AGG + chr3_2:65301314-65301333 None:intergenic 40.0%
ATCAAACAGATAGGACACAG+TGG - chr3_2:65301499-65301518 Msa0417910:three_prime_UTR 40.0%
!!! AGTTTTTTCCATAGAGGAGG+TGG + chr3_2:65301543-65301562 None:intergenic 40.0%
! ATCCTCAATATGGCTTGTGT+AGG - chr3_2:65301881-65301900 Msa0417910:intron 40.0%
TACCTACACAAGCCATATTG+AGG + chr3_2:65301886-65301905 None:intergenic 40.0%
ATCACAGCATAGATAAGAGG+AGG + chr3_2:65302048-65302067 None:intergenic 40.0%
TCCTCTTATCTATGCTGTGA+TGG - chr3_2:65302047-65302066 Msa0417910:intron 40.0%
CCTCTTATCTATGCTGTGAT+GGG - chr3_2:65302048-65302067 Msa0417910:intron 40.0%
CTCTTATCTATGCTGTGATG+GGG - chr3_2:65302049-65302068 Msa0417910:intron 40.0%
!! ATTGGTCTTCAGCAGCTTAA+GGG - chr3_2:65302393-65302412 Msa0417910:CDS 40.0%
CTTCACCAACAAATCTGATG+TGG - chr3_2:65302434-65302453 Msa0417910:CDS 40.0%
CTCCATCATCAAATTCCATC+CGG - chr3_2:65302486-65302505 Msa0417910:CDS 40.0%
! AAAGTACTTACTTCTCCGGA+TGG + chr3_2:65302504-65302523 None:intergenic 40.0%
AAACTCACATAACATGGGTG+GGG + chr3_2:65302895-65302914 None:intergenic 40.0%
CAAAACTCACATAACATGGG+TGG + chr3_2:65302897-65302916 None:intergenic 40.0%
GGTGAATTGAGCTTGGATTA+AGG + chr3_2:65303247-65303266 None:intergenic 40.0%
CAACTCAATGGTGAACATGT+TGG - chr3_2:65303272-65303291 Msa0417910:intron 40.0%
GTTGGACAAGCAGCTAAAAT+TGG - chr3_2:65303290-65303309 Msa0417910:intron 40.0%
TTATAGGAAGCAATGGCTGT+TGG - chr3_2:65303428-65303447 Msa0417910:intron 40.0%
!! GAAATGTTAGCAATGGGTTG+TGG - chr3_2:65303497-65303516 Msa0417910:intron 40.0%
ACTTCATGCTATGTTGCAAC+TGG - chr3_2:65303539-65303558 Msa0417910:intron 40.0%
TGTTGCAACTGGTAAGTGAT+TGG - chr3_2:65303550-65303569 Msa0417910:intron 40.0%
AAAGACCAACTTCGTGTGTT+TGG - chr3_2:65303828-65303847 Msa0417910:CDS 40.0%
ACATTCCAAACACACGAAGT+TGG + chr3_2:65303836-65303855 None:intergenic 40.0%
! AACTTCGTGTGTTTGGAATG+TGG - chr3_2:65303835-65303854 Msa0417910:CDS 40.0%
GCTGTTATATTACACACCTG+TGG - chr3_2:65304267-65304286 Msa0417910:intron 40.0%
! TTTGACTTCCTTGCTTGCAT+TGG - chr3_2:65304373-65304392 Msa0417910:intron 40.0%
!! CTTCGGTGTCTTGTTTGTAT+CGG - chr3_2:65304402-65304421 Msa0417910:intron 40.0%
GCAAGGATTCAAAATGTCGA+TGG + chr3_2:65304815-65304834 None:intergenic 40.0%
CAATACTTATCATGGGGTGA+GGG - chr3_2:65305096-65305115 Msa0417910:intron 40.0%
GACCGGTATTATTACACTAG+TGG + chr3_2:65305127-65305146 None:intergenic 40.0%
!!! TGAATGGGTTATTTTGTGGC+TGG - chr3_2:65305200-65305219 Msa0417910:intron 40.0%
TTGGTCATTCGTATAAGCTC+TGG - chr3_2:65305725-65305744 Msa0417910:CDS 40.0%
AAAGTCAAACTACTAAGGGG+AGG - chr3_2:65305941-65305960 Msa0417910:CDS 40.0%
AAGTCAAACTACTAAGGGGA+GGG - chr3_2:65305942-65305961 Msa0417910:CDS 40.0%
!! AAGTCCTCACTTTTATGCCA+CGG + chr3_2:65306172-65306191 None:intergenic 40.0%
TGTGAATTACTAGCCACCTT+GGG + chr3_2:65306479-65306498 None:intergenic 40.0%
TTGTGAATTACTAGCCACCT+TGG + chr3_2:65306480-65306499 None:intergenic 40.0%
ATAAGATAGGCATGCTTCCA+CGG + chr3_2:65306568-65306587 None:intergenic 40.0%
AAAACGACCTGTGAAATCAC+GGG + chr3_2:65306602-65306621 None:intergenic 40.0%
TGAAGGATGACAAGAAACTC+TGG + chr3_2:65306684-65306703 None:intergenic 40.0%
! GGGAAGCATAAATAGAGAGG+GGG - chr3_2:65301124-65301143 Msa0417910:three_prime_UTR 45.0%
GAGAGGATACTTGTGTCTTG+TGG + chr3_2:65301220-65301239 None:intergenic 45.0%
GAAGGCTATGTATGACTGAG+AGG + chr3_2:65301237-65301256 None:intergenic 45.0%
! TTCCATAGAGGAGGTGGATT+TGG + chr3_2:65301537-65301556 None:intergenic 45.0%
! TTGGTCTTCAGACACAAGTG+TGG - chr3_2:65302020-65302039 Msa0417910:CDS 45.0%
CCCATCACAGCATAGATAAG+AGG + chr3_2:65302051-65302070 None:intergenic 45.0%
! TTGCAGGTTGGGATTTCTTG+TGG - chr3_2:65302317-65302336 Msa0417910:intron 45.0%
TTGTCACATGCTGCACTTGT+AGG - chr3_2:65302345-65302364 Msa0417910:intron 45.0%
TGCTGCACTTGTAGGATTCA+TGG - chr3_2:65302353-65302372 Msa0417910:intron 45.0%
CTGCTGAAGACCAATCATGA+TGG + chr3_2:65302388-65302407 None:intergenic 45.0%
!! GATTGGTCTTCAGCAGCTTA+AGG - chr3_2:65302392-65302411 Msa0417910:CDS 45.0%
! TTGGTCTTCAGCAGCTTAAG+GGG - chr3_2:65302394-65302413 Msa0417910:CDS 45.0%
CTCCGGATGGAATTTGATGA+TGG + chr3_2:65302491-65302510 None:intergenic 45.0%
! GTTTGGAATGTGGTAGCTCA+CGG - chr3_2:65303845-65303864 Msa0417910:CDS 45.0%
! CACGTTTGATGACAGACCAT+CGG - chr3_2:65303908-65303927 Msa0417910:CDS 45.0%
AGGGAAATCTCCGCTTAAGA+AGG + chr3_2:65303980-65303999 None:intergenic 45.0%
ATTGAAGCAAGTATGGCCAC+AGG + chr3_2:65304286-65304305 None:intergenic 45.0%
ATAATCCTCTCTGCACTTCC+AGG - chr3_2:65304304-65304323 Msa0417910:intron 45.0%
! TTAATCCTGGAAGTGCAGAG+AGG + chr3_2:65304312-65304331 None:intergenic 45.0%
!! AGAAAGCACCAATGCAAGCA+AGG + chr3_2:65304384-65304403 None:intergenic 45.0%
! GCTTGCATTGGTGCTTTCTT+CGG - chr3_2:65304385-65304404 Msa0417910:intron 45.0%
CCTCACCCCATGATAAGTAT+TGG + chr3_2:65305098-65305117 None:intergenic 45.0%
CCAATACTTATCATGGGGTG+AGG - chr3_2:65305095-65305114 Msa0417910:intron 45.0%
ATTCTACTGGAGAGGCTACA+AGG + chr3_2:65305293-65305312 None:intergenic 45.0%
CTACCAAGAACTTCTATCCC+AGG + chr3_2:65305638-65305657 None:intergenic 45.0%
TCACAGAAGGCTTGTGTTGT+TGG + chr3_2:65305665-65305684 None:intergenic 45.0%
ATACGAATGACCAAGATGCC+TGG + chr3_2:65305719-65305738 None:intergenic 45.0%
AGTGACCCACTTGAGTATTC+TGG + chr3_2:65305902-65305921 None:intergenic 45.0%
GAGGGTCCAAGCTGTAATAT+TGG - chr3_2:65305960-65305979 Msa0417910:CDS 45.0%
!! AGTCCTCACTTTTATGCCAC+GGG + chr3_2:65306171-65306190 None:intergenic 45.0%
!! AGTTTGCTATGGTGAACCCA+AGG - chr3_2:65306460-65306479 Msa0417910:CDS 45.0%
GCTTAAAGTGGCACACTTTG+TGG - chr3_2:65306500-65306519 Msa0417910:CDS 45.0%
!! TAAAATTAAAAAAAAAACTA+AGG + chr3_2:65303367-65303386 None:intergenic 5.0%
!!! ACTTTTTTTTTTTTATAAAT+TGG + chr3_2:65304068-65304087 None:intergenic 5.0%
!! ATAAAATGTTAATTAATTTA+GGG + chr3_2:65304968-65304987 None:intergenic 5.0%
CACCAAATCCACCTCCTCTA+TGG - chr3_2:65301532-65301551 Msa0417910:exon 50.0%
! TGCTAGCCTAAGCATACCTC+AGG - chr3_2:65301725-65301744 Msa0417910:intron 50.0%
AGCAGTGACACTACAGCTAC+TGG + chr3_2:65302099-65302118 None:intergenic 50.0%
GCACTTGTAGGATTCATGGC+AGG - chr3_2:65302357-65302376 Msa0417910:intron 50.0%
AGCAGCTTAAGGGGTTGCTT+GGG - chr3_2:65302403-65302422 Msa0417910:CDS 50.0%
GACACTAGAGGAGCAATAGC+TGG + chr3_2:65303143-65303162 None:intergenic 50.0%
! ATGGGTTGTGGGAACATTGC+AGG - chr3_2:65303509-65303528 Msa0417910:intron 50.0%
CGACCTGGGATAGAAGTTCT+TGG - chr3_2:65305632-65305651 Msa0417910:intron 50.0%
TACAAGCACTCCAGGCATCT+TGG - chr3_2:65305706-65305725 Msa0417910:CDS 50.0%
TACTGGAGGAACTGCACAAG+AGG - chr3_2:65306138-65306157 Msa0417910:intron 50.0%
TCTCCCGTGGCATAAAAGTG+AGG - chr3_2:65306165-65306184 Msa0417910:intron 50.0%
TTGCTATGGTGAACCCAAGG+TGG - chr3_2:65306463-65306482 Msa0417910:CDS 50.0%
CTAGGCACGCTGAAGTTTGA+AGG + chr3_2:65306701-65306720 None:intergenic 50.0%
GCAGGTGCAGCCATCATGAT+TGG - chr3_2:65302375-65302394 Msa0417910:CDS 55.0%
CAGCAGCTTAAGGGGTTGCT+TGG - chr3_2:65302402-65302421 Msa0417910:CDS 55.0%
! CCTGGAGTGCTTGTAGCCAT+GGG + chr3_2:65305701-65305720 None:intergenic 55.0%
TGCTTCCACGGCTTCAGCAA+CGG + chr3_2:65306556-65306575 None:intergenic 55.0%
TCGCTGACCCGTGATTTCAC+AGG - chr3_2:65306592-65306611 Msa0417910:CDS 55.0%
CCCATGGCTACAAGCACTCC+AGG - chr3_2:65305698-65305717 Msa0417910:CDS 60.0%
! GCCTGGAGTGCTTGTAGCCA+TGG + chr3_2:65305702-65305721 None:intergenic 60.0%
CACAAGAGGTTGCTCTCCCG+TGG - chr3_2:65306152-65306171 Msa0417910:intron 60.0%
CCACGGCTTCAGCAACGGTA+AGG + chr3_2:65306551-65306570 None:intergenic 60.0%
CCTTACCGTTGCTGAAGCCG+TGG - chr3_2:65306548-65306567 Msa0417910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65301081 65307066 65301081 ID=Msa0417910;Name=Msa0417910
chr3_2 mRNA 65301081 65307066 65301081 ID=Msa0417910-mRNA-1;Parent=Msa0417910;Name=Msa0417910-mRNA-1;_AED=0.15;_eAED=0.15;_QI=345|1|1|1|1|1|12|461|660
chr3_2 exon 65301081 65301685 65301081 ID=Msa0417910-mRNA-1:exon:14745;Parent=Msa0417910-mRNA-1
chr3_2 exon 65301966 65302042 65301966 ID=Msa0417910-mRNA-1:exon:14744;Parent=Msa0417910-mRNA-1
chr3_2 exon 65302156 65302244 65302156 ID=Msa0417910-mRNA-1:exon:14743;Parent=Msa0417910-mRNA-1
chr3_2 exon 65302361 65302554 65302361 ID=Msa0417910-mRNA-1:exon:14742;Parent=Msa0417910-mRNA-1
chr3_2 exon 65303700 65303986 65303700 ID=Msa0417910-mRNA-1:exon:14741;Parent=Msa0417910-mRNA-1
chr3_2 exon 65304587 65304713 65304587 ID=Msa0417910-mRNA-1:exon:14740;Parent=Msa0417910-mRNA-1
chr3_2 exon 65304807 65305037 65304807 ID=Msa0417910-mRNA-1:exon:14739;Parent=Msa0417910-mRNA-1
chr3_2 exon 65305125 65305190 65305125 ID=Msa0417910-mRNA-1:exon:14738;Parent=Msa0417910-mRNA-1
chr3_2 exon 65305635 65305824 65305635 ID=Msa0417910-mRNA-1:exon:14737;Parent=Msa0417910-mRNA-1
chr3_2 exon 65305909 65306116 65305909 ID=Msa0417910-mRNA-1:exon:14736;Parent=Msa0417910-mRNA-1
chr3_2 exon 65306249 65306297 65306249 ID=Msa0417910-mRNA-1:exon:14735;Parent=Msa0417910-mRNA-1
chr3_2 exon 65306401 65307066 65306401 ID=Msa0417910-mRNA-1:exon:14734;Parent=Msa0417910-mRNA-1
chr3_2 five_prime_UTR 65306722 65307066 65306722 ID=Msa0417910-mRNA-1:five_prime_utr;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65306401 65306721 65306401 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65306249 65306297 65306249 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65305909 65306116 65305909 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65305635 65305824 65305635 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65305125 65305190 65305125 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65304807 65305037 65304807 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65304587 65304713 65304587 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65303700 65303986 65303700 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65302361 65302554 65302361 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65302156 65302244 65302156 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65301966 65302042 65301966 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 CDS 65301542 65301685 65301542 ID=Msa0417910-mRNA-1:cds;Parent=Msa0417910-mRNA-1
chr3_2 three_prime_UTR 65301081 65301541 65301081 ID=Msa0417910-mRNA-1:three_prime_utr;Parent=Msa0417910-mRNA-1
Gene Sequence

>Msa0417910

ATGAGTTCATTACCCTCTGATGCTTTCAATATGAGAGTAACAGAAGATGGAAATCTTCATCTTGAAGATACTCATCAAACAGATAGGACACAGTGGATGCTAAATTCACCAAATCCACCTCCTCTATGGAAAAAACTAATTACTCCACTTAAGAATAACAAGTTCTTTTCTTCATCCAAGAAAAGAACTTGCCATGAACATGTTTTTTCTTTCTTTAGTGGTTTATTTCCAATACTTAGCTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCAGGTTTAACTCTTGCTAGCCTAAGCATACCTCAGAGTATTGGTTATGCTAATTTAGCAAAACTTGATCCTCAATATGGCTTGTACACAAGTGTGGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCAGTAGCTGTAGTGTCACTGCTGCTATCTTCCTTATGTCACAAAGTGGTTGATCCAGATTTAAATCATGATGATTACAGAAATTTTGTATTTACTGTAACATTATTTGCTGGAATTTTTCAAGTTGCATTTGGAGTTTTCAGGTTGGGATTTCTTGTGGATTTTTTGTCACATGCTGCACTTGTAGGATTCATGGCAGGTGCAGCCATCATGATTGGTCTTCAGCAGCTTAAGGGGTTGCTTGGGATTAGTAACTTCACCAACAAATCTGATGTGGTTTCTGTTTTGGAATCTGTTTATAAGTCACTCCATCATCAAATTCCATCCGGAGAATGGTACCCTCTGAATTTTGTCATTGGAAGTTCATTTCTGATTTTCCTTTTGTTTGCAAGATTTATGGGAAAAAGAAACAAAAAGCTTTTCTGGTTGCCAGCTATTGCTCCTCTAGTGTCAGTTATATTATCAACTTTTATTGTGTATATATCCAAAGCAGATAAAAATGGGGTTAATATAGTAAAACATGTCAAAAGAGGCCTTAATCCAAGCTCAATTCACCAATTACAACTCAATGGTGAACATGTTGGACAAGCAGCTAAAATTGGATTGATTTCTGCTGTTATTGCTCTCACTGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCATCTAGATGGGAACAAAGAAATGTTAGCAATGGGTTGTGGGAACATTGCAGGATCTTTCACTTCATGCTATGTTGCAACTGGTTCATTTTCAAGAACTGCAGTAAATTTCAGTGCAAGATGTCAATCATCAGTATCAAATATTGTGATGGCTGTAACAGTGATTCTGTGTTTGGAATTGTTCACAAGGCTGTTATATTACACACCTGTGGCCATACTTGCTTCAATAATCCTCTCTGCACTTCCAGGATTAATTGACATAAGAGAAGCTTGCTATATATGGAAAGTTGACAAATTTGACTTCCTTGCTTGCATTGGTGCTTTCTTCGGTGTCTTGTTTGTATCGGTAGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCGTTTGCAAAGATAGTAATACAATCAATTCGACCTGGGATAGAAGTTCTTGGTAGAATTCCAACAACACAAGCCTTCTGTGATGTTAGTCAATATCCCATGGCTACAAGCACTCCAGGCATCTTGGTCATTCGTATAAGCTCTGGCTCACTCTGCTTTGCAAATGCCAATGTTGTAAGAGAAAGAATACTCAAGTGGGTCACTGAAGAAGATGACCTTAAAGAAAGTCAAACTACTAAGGGGAGGGTCCAAGCTGTAATATTGGACATGACTAATTTGATGAATGTTGATACTTCTGGAATTATAGTACTGGAGGAACTGCACAAGAGGTTGCTCTCCCGTGGCATAAAATTTGCTATGGTGAACCCAAGGTGGCTAGTAATTCACAAGCTTAAAGTGGCACACTTTGTGGATAAAATTGGGAAAGAATGGGTTTTCCTTACCGTTGCTGAAGCCGTGGAAGCATGCCTATCTTATAAATTCGCTGACCCGTGA
Protein sequence

>Msa0417910

MSSLPSDAFNMRVTEDGNLHLEDTHQTDRTQWMLNSPNPPPLWKKLITPLKNNKFFSSSKKRTCHEHVFSFFSGLFPILSLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLCHKVVDPDLNHDDYRNFVFTVTLFAGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLHHQIPSGEWYPLNFVIGSSFLIFLLFARFMGKRNKKLFWLPAIAPLVSVILSTFIVYISKADKNGVNIVKHVKRGLNPSSIHQLQLNGEHVGQAAKIGLISAVIALTEAMAVGRSFASIKGYHLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSVSNIVMAVTVILCLELFTRLLYYTPVAILASIILSALPGLIDIREACYIWKVDKFDFLACIGAFFGVLFVSVEIGLLVAVSISFAKIVIQSIRPGIEVLGRIPTTQAFCDVSQYPMATSTPGILVIRISSGSLCFANANVVRERILKWVTEEDDLKESQTTKGRVQAVILDMTNLMNVDTSGIIVLEELHKRLLSRGIKFAMVNPRWLVIHKLKVAHFVDKIGKEWVFLTVAEAVEACLSYKFADP*