AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191620 MtrunA17_Chr2g0281411 98.616 289 4 0 1 289 1 289 0.0 584
Msa0191620 MtrunA17_Chr4g0047981 75.241 311 54 2 1 288 1 311 1.17e-163 457
Msa0191620 MtrunA17_Chr4g0022441 66.343 309 77 3 3 288 2 306 5.34e-140 397
Msa0191620 MtrunA17_Chr5g0409961 61.905 273 91 4 1 268 1 265 1.12e-124 356
Msa0191620 MtrunA17_Chr2g0323921 66.176 136 45 1 153 288 66 200 1.34e-58 186
Msa0191620 MtrunA17_Chr2g0323931 42.424 99 31 2 3 79 4 98 3.72e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191620 AT1G61250.1 72.509 291 75 3 1 288 1 289 4.63e-159 444
Msa0191620 AT1G11180.1 69.966 293 81 3 1 288 1 291 6.65e-152 426
Msa0191620 AT1G11180.3 67.918 293 80 4 1 288 1 284 4.11e-144 406
Msa0191620 AT1G61250.2 73.004 263 66 3 1 260 1 261 5.38e-144 406
Msa0191620 AT2G20840.1 70.280 286 80 2 3 288 2 282 7.69e-143 403
Msa0191620 AT1G11180.2 65.033 306 80 4 1 288 1 297 9.07e-142 401
Msa0191620 AT1G03550.1 64.685 286 97 1 3 288 2 283 1.33e-133 380
Msa0191620 AT2G20840.3 75.314 239 59 0 50 288 1 239 2.73e-129 367
Msa0191620 AT2G20840.2 75.314 239 59 0 50 288 1 239 2.73e-129 367
Msa0191620 AT1G32050.1 61.624 271 94 3 1 269 1 263 1.38e-122 351
Msa0191620 AT1G03550.4 64.729 258 87 1 3 260 2 255 9.08e-120 344
Msa0191620 AT1G03550.3 68.610 223 70 0 66 288 2 224 2.37e-109 316
Msa0191620 AT1G03550.5 64.135 237 81 1 3 239 2 234 3.53e-107 311
Msa0191620 AT1G03550.6 66.818 220 69 1 3 222 2 217 3.49e-103 300
Msa0191620 AT1G03550.2 68.571 210 66 0 79 288 15 224 8.67e-102 297
Msa0191620 AT1G03550.7 66.667 198 62 1 3 200 2 195 2.06e-96 282

Find 100 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATATCATGATGGATAAT+TGG 0.184182 2_1:+7227287 None:intergenic
GCAACTGTTGTGTTGTTAAA+AGG 0.217095 2_1:+7229363 None:intergenic
CAAGTAGAAAATAATTAAAA+TGG 0.225283 2_1:+7229492 None:intergenic
GCAGATTACAACTATGGTTT+TGG 0.226168 2_1:-7228622 Msa0191620:CDS
ACCGACAGTGCTATTAAATT+TGG 0.229795 2_1:-7225525 Msa0191620:CDS
AACCATTATATCGTGCATTT+AGG 0.262649 2_1:-7226537 Msa0191620:intron
ATTGGTGACTATACTATTAT+TGG 0.271514 2_1:-7224830 Msa0191620:CDS
GTCACCGCAGCTTGGATTAA+AGG 0.279800 2_1:-7226728 Msa0191620:CDS
TATTTGTAACACAATTTCTA+TGG 0.283994 2_1:+7224244 None:intergenic
TTGAAACATTGGTCAGCGTC+TGG 0.297966 2_1:-7224543 Msa0191620:CDS
TACTTCATAGCAGGGGTTCC+TGG 0.299994 2_1:-7226580 Msa0191620:CDS
AAAAGGGAAGAAAGGAGATT+TGG 0.310493 2_1:+7229380 None:intergenic
TTGGTGACTATACTATTATT+GGG 0.324018 2_1:-7224829 Msa0191620:CDS
AGAAAGGAGATTTGGGACTT+TGG 0.334868 2_1:+7229388 None:intergenic
TACCTAAATGCACGATATAA+TGG 0.351386 2_1:+7226535 None:intergenic
GAACGTGCAGATTACAACTA+TGG 0.367642 2_1:-7228628 Msa0191620:CDS
CGATATCATGATGGATAATT+GGG 0.375064 2_1:+7227288 None:intergenic
AATGGGAGTTTAGAGACTTT+AGG 0.375455 2_1:+7229510 None:intergenic
TCAATTCAGCCTCCTTGGCT+TGG 0.376025 2_1:+7228415 None:intergenic
AAAGAGGTACTTACAGCAAA+AGG 0.387143 2_1:+7229245 None:intergenic
TAGTTGTAATCTGCACGTTC+AGG 0.387808 2_1:+7228631 None:intergenic
AAAGGGAAGAAAGGAGATTT+GGG 0.389982 2_1:+7229381 None:intergenic
GAAGCTGCACTAGGAGCAAT+GGG 0.395431 2_1:-7224340 Msa0191620:CDS
TCTTATGCAAGAGAACAAAA+TGG 0.396216 2_1:+7229462 None:intergenic
TGAAGTCTTTGAAGGTGAAC+TGG 0.396433 2_1:+7227254 None:intergenic
CCCTGCTATGAAGTAGATAA+TGG 0.406046 2_1:+7226588 None:intergenic
AAATGTAGACATTAAGTGAT+TGG 0.407188 2_1:-7224138 Msa0191620:three_prime_UTR
TTCTGCTTACAGCTTCACCT+TGG 0.408495 2_1:-7225403 Msa0191620:intron
TCTGCTTACAGCTTCACCTT+GGG 0.416242 2_1:-7225402 Msa0191620:intron
GCCATTATCTACTTCATAGC+AGG 0.420275 2_1:-7226589 Msa0191620:CDS
CAACATATTGAAGTCTTTGA+AGG 0.421218 2_1:+7227246 None:intergenic
ATTAACAAACCACATATAAC+AGG 0.421811 2_1:+7224177 None:intergenic
ATAGTCACCAATCACATCTA+TGG 0.429556 2_1:+7224841 None:intergenic
ACATAAACTACCTCGTGAAA+TGG 0.432174 2_1:+7227611 None:intergenic
TGCTTGTTTCTATCATCTCA+TGG 0.432407 2_1:-7229312 Msa0191620:exon
GGTTAGTGTTGTGCCTTACA+TGG 0.440099 2_1:-7226763 Msa0191620:CDS
TTGTTATTGAGGAGAAGAAT+TGG 0.449340 2_1:-7227322 Msa0191620:CDS
GGTCAGCGTCTGGGTTATCC+AGG 0.451468 2_1:-7224533 Msa0191620:intron
AAGTAGAAAATAATTAAAAT+GGG 0.457163 2_1:+7229493 None:intergenic
TGAATTGAGAAAACGAGAAC+AGG 0.474757 2_1:-7228400 Msa0191620:intron
GTTGACTTGTTCTTCGTCGA+AGG 0.476933 2_1:+7229268 None:intergenic
GCTTATTTGTCCAAAAGAAA+AGG 0.479934 2_1:+7224051 None:intergenic
GGAAGCTGCACTAGGAGCAA+TGG 0.491496 2_1:-7224341 Msa0191620:CDS
TTGACTTGTTCTTCGTCGAA+GGG 0.494587 2_1:+7229269 None:intergenic
TGTTTCTATCATCTCATGGC+CGG 0.497732 2_1:-7229308 Msa0191620:exon
TGCAGCTGGAATTGTTATTG+AGG 0.499709 2_1:-7227333 Msa0191620:intron
CAGCTACAACATTCCATGTA+AGG 0.505530 2_1:+7226750 None:intergenic
CGTTCAGGATTAAGAGGTGC+AGG 0.511081 2_1:+7228646 None:intergenic
GCAGGTCTAGAATTTGTGGC+AGG 0.511524 2_1:+7228664 None:intergenic
AACATGCTACCTGTTATATG+TGG 0.515170 2_1:-7224186 Msa0191620:three_prime_UTR
GTGTTGTTAAAAGGGAAGAA+AGG 0.517573 2_1:+7229372 None:intergenic
CAACTGTTGTGTTGTTAAAA+GGG 0.518039 2_1:+7229364 None:intergenic
AGGTGCAGGTCTAGAATTTG+TGG 0.525747 2_1:+7228660 None:intergenic
CCATTATCTACTTCATAGCA+GGG 0.528046 2_1:-7226588 Msa0191620:CDS
TTTCCTTTGAAAACTATAGG+AGG 0.529946 2_1:+7225355 None:intergenic
TCCTTTGAAAACTATAGGAG+GGG 0.531178 2_1:+7225357 None:intergenic
ATTGTTCTGTCTTGAAACAT+TGG 0.534016 2_1:-7224554 Msa0191620:CDS
TTTCATTCGCGATATCATGA+TGG 0.535225 2_1:+7227279 None:intergenic
TCTGCACGTTCAGGATTAAG+AGG 0.535265 2_1:+7228640 None:intergenic
AAGAGGTACTTACAGCAAAA+GGG 0.537767 2_1:+7229246 None:intergenic
CTGTCAGCCATAGATGTGAT+TGG 0.539516 2_1:-7224848 Msa0191620:CDS
TGAAACATTGGTCAGCGTCT+GGG 0.544642 2_1:-7224542 Msa0191620:CDS
GATATAATGGTTTATACCAC+AGG 0.549797 2_1:+7226548 None:intergenic
TTCCTTTGAAAACTATAGGA+GGG 0.549800 2_1:+7225356 None:intergenic
ACATTTATATTGCCTTCAGA+AGG 0.555762 2_1:+7224297 None:intergenic
ACAGTGCTATTAAATTTGGA+TGG 0.559045 2_1:-7225521 Msa0191620:CDS
GTAAGACTGCTGAGATGAAG+AGG 0.560995 2_1:-7224363 Msa0191620:CDS
TCCAAATTTAATAGCACTGT+CGG 0.561192 2_1:+7225524 None:intergenic
ATGAAGAGGGAAGCTGCACT+AGG 0.565664 2_1:-7224349 Msa0191620:CDS
AGGTCTAGAATTTGTGGCAG+GGG 0.572011 2_1:+7228666 None:intergenic
TATATGTACTTCCGTGGCGG+TGG 0.574961 2_1:-7224385 Msa0191620:CDS
TTCTCCTTTAATCCAAGCTG+CGG 0.576908 2_1:+7226724 None:intergenic
CAGAGGAGAATACAAGAAAG+TGG 0.577905 2_1:+7229341 None:intergenic
GGGGTTACTGTCGTAACGAC+CGG 0.580055 2_1:+7229289 None:intergenic
TACGATGAAGCACCTTCTGA+AGG 0.580180 2_1:-7224309 Msa0191620:exon
GTTTAGAGACTTTAGGACAC+AGG 0.582504 2_1:+7229517 None:intergenic
TACCACAGGACATATGCTCC+AGG 0.584654 2_1:+7226562 None:intergenic
TTGTAGCTGTCACCGCAGCT+TGG 0.586800 2_1:-7226736 Msa0191620:CDS
GGAAAGAGAACTCCAAGCCA+AGG 0.588085 2_1:-7228427 Msa0191620:CDS
AGCTGCACTAGGAGCAATGG+GGG 0.596542 2_1:-7224338 Msa0191620:CDS
CAGGTCTAGAATTTGTGGCA+GGG 0.602674 2_1:+7228665 None:intergenic
TCAAAATGCAGGAAGTAAGA+CGG 0.604251 2_1:-7227644 Msa0191620:intron
AGAGACTTTAGGACACAGGA+AGG 0.612154 2_1:+7229521 None:intergenic
TGACTTGTTCTTCGTCGAAG+GGG 0.613556 2_1:+7229270 None:intergenic
TTCCTGGAGCATATGTCCTG+TGG 0.615005 2_1:-7226564 Msa0191620:CDS
TGGTGACTATACTATTATTG+GGG 0.621523 2_1:-7224828 Msa0191620:intron
CAGCTAAGATACAGAACCCA+AGG 0.627459 2_1:+7225386 None:intergenic
GCAGCTTGGATTAAAGGAGA+AGG 0.634562 2_1:-7226722 Msa0191620:intron
CAAGTATATATGTACTTCCG+TGG 0.637194 2_1:-7224391 Msa0191620:CDS
CATTATCTACTTCATAGCAG+GGG 0.639342 2_1:-7226587 Msa0191620:CDS
AGAAACAAGCAAGCAAGCAG+AGG 0.644380 2_1:+7229324 None:intergenic
CAGCAGTCTTACCACCGCCA+CGG 0.656707 2_1:+7224374 None:intergenic
GAGACTTTAGGACACAGGAA+GGG 0.665839 2_1:+7229522 None:intergenic
TAAGACTGCTGAGATGAAGA+GGG 0.669382 2_1:-7224362 Msa0191620:CDS
TATACCTCTTGATGCATCAG+CGG 0.688469 2_1:-7228587 Msa0191620:intron
AAGCTGCACTAGGAGCAATG+GGG 0.689730 2_1:-7224339 Msa0191620:CDS
CATACCGCTGATGCATCAAG+AGG 0.691720 2_1:+7228583 None:intergenic
AAGAGAACTCCAAGCCAAGG+AGG 0.704365 2_1:-7228424 Msa0191620:CDS
GTATATATGTACTTCCGTGG+CGG 0.712863 2_1:-7224388 Msa0191620:CDS
AAAGAAGAAGCCATTTCACG+AGG 0.714436 2_1:-7227621 Msa0191620:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAGAAAATAATTAAAAT+GGG + chr2_1:7224096-7224115 None:intergenic 10.0%
!!! CTATATTATTTTTTAAACAT+TGG - chr2_1:7225704-7225723 Msa0191620:intron 10.0%
!!! TTTTAGTCATTTATATATTT+GGG + chr2_1:7226576-7226595 None:intergenic 10.0%
!!! ATTTTAACTTATTCTTAAAA+CGG - chr2_1:7229095-7229114 Msa0191620:intron 10.0%
!! CAAGTAGAAAATAATTAAAA+TGG + chr2_1:7224097-7224116 None:intergenic 15.0%
!!! AAAAGTTATTTTTAGAAAAG+AGG + chr2_1:7224360-7224379 None:intergenic 15.0%
!!! AATTATTTCTTTTTGGATTT+TGG - chr2_1:7224451-7224470 Msa0191620:intron 15.0%
!!! ATTATTTCTTTTTGGATTTT+GGG - chr2_1:7224452-7224471 Msa0191620:intron 15.0%
!! TTAAAATGAAACATGAAAAT+TGG + chr2_1:7224539-7224558 None:intergenic 15.0%
!! TTTAAAAAAATTCAGAATTC+TGG - chr2_1:7224889-7224908 Msa0191620:intron 15.0%
!! ATATGTATAAAAAAAGGATT+TGG + chr2_1:7225054-7225073 None:intergenic 15.0%
!! TTACAGATATGTATAAAAAA+AGG + chr2_1:7225060-7225079 None:intergenic 15.0%
!! TTTAGTCATTTATATATTTG+GGG + chr2_1:7226575-7226594 None:intergenic 15.0%
!!! GTTTTAGTCATTTATATATT+TGG + chr2_1:7226577-7226596 None:intergenic 15.0%
!! TTAACTAATTAAAACTTCTA+CGG + chr2_1:7227231-7227250 None:intergenic 15.0%
!! ATGAGTAAAATAAGTTAATA+TGG - chr2_1:7227881-7227900 Msa0191620:intron 15.0%
!!! AAAGAATGAAGAAGTTTTTA+TGG + chr2_1:7224176-7224195 None:intergenic 20.0%
!!! TTTTTTTTGTTTTCTTCAAC+TGG - chr2_1:7224380-7224399 Msa0191620:CDS 20.0%
!!! TTTTTTTGTTTTCTTCAACT+GGG - chr2_1:7224381-7224400 Msa0191620:CDS 20.0%
!!! AGAAATAATTCTGTTGTTTT+AGG + chr2_1:7224441-7224460 None:intergenic 20.0%
!!! ACAACAGAATTATTTCTTTT+TGG - chr2_1:7224444-7224463 Msa0191620:intron 20.0%
!!! TTTCATGTTTCATTTTAAGA+TGG - chr2_1:7224541-7224560 Msa0191620:CDS 20.0%
!!! ATATGACATGTTTTAACAAT+AGG - chr2_1:7225123-7225142 Msa0191620:intron 20.0%
!! ATTGTTTATCAATTAAACAC+CGG + chr2_1:7225435-7225454 None:intergenic 20.0%
!! AAGTATAGTTAATAAGAAAC+AGG + chr2_1:7225921-7225940 None:intergenic 20.0%
!! AGTATACTGATAAGTATAAA+AGG - chr2_1:7226523-7226542 Msa0191620:intron 20.0%
!!! CTTGCAATTTTTAAATTTGT+TGG + chr2_1:7227119-7227138 None:intergenic 20.0%
!! TTCTTTATTGTCAAATTGTT+TGG - chr2_1:7227303-7227322 Msa0191620:CDS 20.0%
!! ATTCCTTAATATCTATAGTT+AGG - chr2_1:7227389-7227408 Msa0191620:intron 20.0%
!!! TTTTATATAATAGAAGTCGA+AGG - chr2_1:7227487-7227506 Msa0191620:intron 20.0%
!! TTTATATAATAGAAGTCGAA+GGG - chr2_1:7227488-7227507 Msa0191620:intron 20.0%
!! AGAGAAACCAAAAAATTATA+TGG + chr2_1:7227734-7227753 None:intergenic 20.0%
!! TTTCTCTTAAAATCAGTTTA+TGG - chr2_1:7227747-7227766 Msa0191620:intron 20.0%
!! TTCTTTATTGCTTATACATA+TGG - chr2_1:7228314-7228333 Msa0191620:intron 20.0%
!!! AGACTTTGTTTTTAAAACAA+TGG - chr2_1:7228385-7228404 Msa0191620:intron 20.0%
!!! GACTTTGTTTTTAAAACAAT+GGG - chr2_1:7228386-7228405 Msa0191620:intron 20.0%
!!! ACTTTGTTTTTAAAACAATG+GGG - chr2_1:7228387-7228406 Msa0191620:intron 20.0%
!! TATTTGTAACACAATTTCTA+TGG + chr2_1:7229345-7229364 None:intergenic 20.0%
!! GAAATAGAAACAAAAAATCT+CGG + chr2_1:7229373-7229392 None:intergenic 20.0%
!! ATGAAGAAGTTTTTATGGTA+AGG + chr2_1:7224171-7224190 None:intergenic 25.0%
!!! ATTTTAAGATGGTTTCAACT+TGG - chr2_1:7224552-7224571 Msa0191620:CDS 25.0%
! AAAACATATGTGTTAGATGT+GGG + chr2_1:7224872-7224891 None:intergenic 25.0%
! TAAAACATATGTGTTAGATG+TGG + chr2_1:7224873-7224892 None:intergenic 25.0%
! AAAAAAATTCAGAATTCTGG+AGG - chr2_1:7224892-7224911 Msa0191620:intron 25.0%
!!! TGTCTTATTTCAAGAGTTTA+TGG - chr2_1:7225090-7225109 Msa0191620:intron 25.0%
! AGGTATACAATGAAATCTTA+TGG - chr2_1:7225206-7225225 Msa0191620:intron 25.0%
!!! TATTGTTTTATGCTGTATGT+TGG - chr2_1:7225244-7225263 Msa0191620:intron 25.0%
! GTGTGTGAAAATTATATCAT+GGG + chr2_1:7225291-7225310 None:intergenic 25.0%
! AGTGTGTGAAAATTATATCA+TGG + chr2_1:7225292-7225311 None:intergenic 25.0%
! TCTACACACAAAAAAAATCT+GGG + chr2_1:7225398-7225417 None:intergenic 25.0%
! TTCTACACACAAAAAAAATC+TGG + chr2_1:7225399-7225418 None:intergenic 25.0%
!!! ATATTGACTTATAGCATGTT+TGG - chr2_1:7225457-7225476 Msa0191620:intron 25.0%
! TTGTTAGTTAATAGACTGTT+TGG + chr2_1:7225597-7225616 None:intergenic 25.0%
! GTAAACTTAATCACAGATAT+AGG + chr2_1:7226003-7226022 None:intergenic 25.0%
! TTGAATAAAACTACTACTTG+AGG - chr2_1:7226071-7226090 Msa0191620:intron 25.0%
!!! ACACTGTTTTGATTTGAATT+TGG - chr2_1:7226673-7226692 Msa0191620:intron 25.0%
! ATCTATAACGAATATTCAAC+AGG - chr2_1:7226712-7226731 Msa0191620:intron 25.0%
! TGTAATATGATACAATCCAT+TGG - chr2_1:7226767-7226786 Msa0191620:intron 25.0%
! ATGATAGATTATATGATGCA+GGG - chr2_1:7226802-7226821 Msa0191620:intron 25.0%
! TTTATTGTCAAATTGTTTGG+AGG - chr2_1:7227306-7227325 Msa0191620:CDS 25.0%
! GTACCTAACTATAGATATTA+AGG + chr2_1:7227395-7227414 None:intergenic 25.0%
! TCAAATCCTTCTTAATGTTT+CGG + chr2_1:7227588-7227607 None:intergenic 25.0%
! ATTTAATTAGTCGTCGTTAT+TGG - chr2_1:7227608-7227627 Msa0191620:intron 25.0%
!! TTGTTTTCTGATAGAATCTT+TGG - chr2_1:7227704-7227723 Msa0191620:intron 25.0%
!!! TGGTCTTCCATATAATTTTT+TGG - chr2_1:7227724-7227743 Msa0191620:intron 25.0%
!! TCTTGAAATTTTGCATTTGT+TGG - chr2_1:7227774-7227793 Msa0191620:intron 25.0%
!!! TTAGCTTTGTTTTGCATATT+GGG - chr2_1:7228134-7228153 Msa0191620:intron 25.0%
!!! GATTTTCCTTTGAAAACTAT+AGG + chr2_1:7228237-7228256 None:intergenic 25.0%
! AATTAAATTTCTCAATCTCC+AGG + chr2_1:7228354-7228373 None:intergenic 25.0%
!!! TGTTTTAAAAACAAAGTCTG+TGG + chr2_1:7228384-7228403 None:intergenic 25.0%
! CTTAATTATCTACATATCCT+AGG + chr2_1:7228531-7228550 None:intergenic 25.0%
!! ATTGGTGACTATACTATTAT+TGG - chr2_1:7228756-7228775 Msa0191620:intron 25.0%
!! TTGGTGACTATACTATTATT+GGG - chr2_1:7228757-7228776 Msa0191620:intron 25.0%
! ACAAGAATAGTAAATACTTC+AGG + chr2_1:7228797-7228816 None:intergenic 25.0%
! TCGTGTGAAAAATTATAAAC+TGG + chr2_1:7228884-7228903 None:intergenic 25.0%
! TATACCATTTATCAGTTGTT+TGG + chr2_1:7228967-7228986 None:intergenic 25.0%
!! TTGTAGATTTTCTACTTCAT+TGG - chr2_1:7229003-7229022 Msa0191620:intron 25.0%
!! ATTTTCTACTTCATTGGATT+TGG - chr2_1:7229009-7229028 Msa0191620:intron 25.0%
! ATTAACAAACCACATATAAC+AGG + chr2_1:7229412-7229431 None:intergenic 25.0%
! AAATGTAGACATTAAGTGAT+TGG - chr2_1:7229448-7229467 Msa0191620:five_prime_UTR 25.0%
TCTTATGCAAGAGAACAAAA+TGG + chr2_1:7224127-7224146 None:intergenic 30.0%
! CAACTGTTGTGTTGTTAAAA+GGG + chr2_1:7224225-7224244 None:intergenic 30.0%
AAATGGTCTATCATTGAACA+TGG + chr2_1:7224720-7224739 None:intergenic 30.0%
GTTCAATGATAGACCATTTA+AGG - chr2_1:7224721-7224740 Msa0191620:intron 30.0%
GAATCTAACAAGTCCTTAAA+TGG + chr2_1:7224737-7224756 None:intergenic 30.0%
ACATTCATGATGCATCATTA+TGG - chr2_1:7224773-7224792 Msa0191620:intron 30.0%
!!! ATGGTGTCTTTTGGTTTATA+TGG - chr2_1:7224792-7224811 Msa0191620:intron 30.0%
! CAGATTACAACTATGGTTTT+GGG - chr2_1:7224965-7224984 Msa0191620:intron 30.0%
ACAATAGGATGTGAAAAAGA+AGG - chr2_1:7225138-7225157 Msa0191620:intron 30.0%
AAACAATATTGTGAACCTAG+AGG + chr2_1:7225232-7225251 None:intergenic 30.0%
TTATATCATGGGCAAAGATA+AGG + chr2_1:7225280-7225299 None:intergenic 30.0%
! TACCATGAAATTTTTAACCC+AGG - chr2_1:7225311-7225330 Msa0191620:intron 30.0%
TTCCTGGGTTAAAAATTTCA+TGG + chr2_1:7225316-7225335 None:intergenic 30.0%
! CTGTAAATACAAGTTTTCCT+GGG + chr2_1:7225331-7225350 None:intergenic 30.0%
! ACTGTAAATACAAGTTTTCC+TGG + chr2_1:7225332-7225351 None:intergenic 30.0%
AGGAAAACTTGTATTTACAG+TGG - chr2_1:7225331-7225350 Msa0191620:intron 30.0%
!!! TTCTTGTTTTCACGGTAAAA+TGG + chr2_1:7225519-7225538 None:intergenic 30.0%
!!! ATACTAGCTTCTTGTTTTCA+CGG + chr2_1:7225527-7225546 None:intergenic 30.0%
! TTCTAAAAAATGCACGTCTA+GGG - chr2_1:7225554-7225573 Msa0191620:intron 30.0%
TTAGTTCAAATTAACCAGCT+AGG + chr2_1:7225620-7225639 None:intergenic 30.0%
AACTATACTTGTCAAAATGC+AGG - chr2_1:7225931-7225950 Msa0191620:intron 30.0%
GTTTACTTATTTCCCTTTGT+TGG - chr2_1:7226017-7226036 Msa0191620:intron 30.0%
! TTGTTATTGAGGAGAAGAAT+TGG - chr2_1:7226264-7226283 Msa0191620:intron 30.0%
! TGATGGATAATTGGGAAAAA+TGG + chr2_1:7226293-7226312 None:intergenic 30.0%
!! CGATATCATGATGGATAATT+GGG + chr2_1:7226301-7226320 None:intergenic 30.0%
CAACATATTGAAGTCTTTGA+AGG + chr2_1:7226343-7226362 None:intergenic 30.0%
!!! GTTGCATTTTTTTCGTTGTT+AGG - chr2_1:7226359-7226378 Msa0191620:intron 30.0%
!!! AACAAGAGGTTGCTTTTAAT+TGG - chr2_1:7226476-7226495 Msa0191620:intron 30.0%
! TCATTTATATATTTGGGGTG+TGG + chr2_1:7226570-7226589 None:intergenic 30.0%
TGATGAACACATTCTCTATT+TGG - chr2_1:7226624-7226643 Msa0191620:intron 30.0%
!!! CTATTTGGTTTTTCTTAGCT+TGG - chr2_1:7226639-7226658 Msa0191620:intron 30.0%
GATGATAGATTATATGATGC+AGG - chr2_1:7226801-7226820 Msa0191620:intron 30.0%
!! TTTAGAAATGGGTTATCGAA+TGG - chr2_1:7226891-7226910 Msa0191620:intron 30.0%
ATCTGATTCAACAGATTCAA+TGG - chr2_1:7226926-7226945 Msa0191620:intron 30.0%
CTGTTACAGGTGTAAAAATA+TGG - chr2_1:7226968-7226987 Msa0191620:intron 30.0%
GATATAATGGTTTATACCAC+AGG + chr2_1:7227041-7227060 None:intergenic 30.0%
AACCATTATATCGTGCATTT+AGG - chr2_1:7227049-7227068 Msa0191620:intron 30.0%
TACCTAAATGCACGATATAA+TGG + chr2_1:7227054-7227073 None:intergenic 30.0%
TGGTAAGGATAAAAATTGCA+AGG + chr2_1:7227269-7227288 None:intergenic 30.0%
AAAGAAAAACCTCTCTCATT+TGG + chr2_1:7227289-7227308 None:intergenic 30.0%
TTATCTAAATCCCAACAACT+GGG + chr2_1:7227557-7227576 None:intergenic 30.0%
! GAAGTATTATTTATCAGCCT+GGG + chr2_1:7227850-7227869 None:intergenic 30.0%
!! AGAAGTATTATTTATCAGCC+TGG + chr2_1:7227851-7227870 None:intergenic 30.0%
AGGCTGATAAATAATACTTC+TGG - chr2_1:7227850-7227869 Msa0191620:intron 30.0%
TATGGATACATGTTACGTTA+CGG - chr2_1:7227899-7227918 Msa0191620:intron 30.0%
TCCAAATTTAATAGCACTGT+CGG + chr2_1:7228065-7228084 None:intergenic 30.0%
! ACAGTGCTATTAAATTTGGA+TGG - chr2_1:7228065-7228084 Msa0191620:intron 30.0%
!!! ATGGTTTTTTCTGTTTTACC+TGG - chr2_1:7228084-7228103 Msa0191620:intron 30.0%
AGCAAAATAGTCAATTTACC+AGG + chr2_1:7228105-7228124 None:intergenic 30.0%
!!! GTTAGCTTTGTTTTGCATAT+TGG - chr2_1:7228133-7228152 Msa0191620:intron 30.0%
TGTAAGCAGAAAAAGAAATG+AGG + chr2_1:7228174-7228193 None:intergenic 30.0%
! TTCCTTTGAAAACTATAGGA+GGG + chr2_1:7228233-7228252 None:intergenic 30.0%
! TTTCCTTTGAAAACTATAGG+AGG + chr2_1:7228234-7228253 None:intergenic 30.0%
ATGTACTTTCGAACCAAATA+GGG + chr2_1:7228434-7228453 None:intergenic 30.0%
AATGTACTTTCGAACCAAAT+AGG + chr2_1:7228435-7228454 None:intergenic 30.0%
TCTTCTTTCACTTCTATTCT+AGG + chr2_1:7228469-7228488 None:intergenic 30.0%
TTTGACATGAATTTGAACCT+AGG - chr2_1:7228511-7228530 Msa0191620:intron 30.0%
TGGTAAAAGTGGTAAAATCT+AGG - chr2_1:7228629-7228648 Msa0191620:CDS 30.0%
CAAAAAATGAGAATAACACG+AGG + chr2_1:7228680-7228699 None:intergenic 30.0%
!!! CTCGTGTTATTCTCATTTTT+TGG - chr2_1:7228678-7228697 Msa0191620:CDS 30.0%
! GATGTTTTCTCATTGATACA+GGG - chr2_1:7228710-7228729 Msa0191620:intron 30.0%
! ATGTTTTCTCATTGATACAG+GGG - chr2_1:7228711-7228730 Msa0191620:intron 30.0%
TGGTGACTATACTATTATTG+GGG - chr2_1:7228758-7228777 Msa0191620:intron 30.0%
AATAGTAAATACTTCAGGAC+AGG + chr2_1:7228792-7228811 None:intergenic 30.0%
TTTGCGTTAGAACTATAATG+TGG + chr2_1:7228908-7228927 None:intergenic 30.0%
! CAGAAAACTTTTCATTGCTT+AGG + chr2_1:7228941-7228960 None:intergenic 30.0%
GTAGAAAATCTACAAGCAAA+TGG + chr2_1:7228998-7229017 None:intergenic 30.0%
! TTGAAAAGTACAATCAAACC+TGG + chr2_1:7229074-7229093 None:intergenic 30.0%
ACAAAAGCAAAGAAGTTAAC+AGG + chr2_1:7229166-7229185 None:intergenic 30.0%
ACATTTATATTGCCTTCAGA+AGG + chr2_1:7229292-7229311 None:intergenic 30.0%
! CTATATGTCACCTTTTCTTT+TGG - chr2_1:7229525-7229544 Msa0191620:five_prime_UTR 30.0%
AATGGGAGTTTAGAGACTTT+AGG + chr2_1:7224079-7224098 None:intergenic 35.0%
AAAGGGAAGAAAGGAGATTT+GGG + chr2_1:7224208-7224227 None:intergenic 35.0%
AAAAGGGAAGAAAGGAGATT+TGG + chr2_1:7224209-7224228 None:intergenic 35.0%
! GTGTTGTTAAAAGGGAAGAA+AGG + chr2_1:7224217-7224236 None:intergenic 35.0%
! GCAACTGTTGTGTTGTTAAA+AGG + chr2_1:7224226-7224245 None:intergenic 35.0%
!! TGCTTGTTTCTATCATCTCA+TGG - chr2_1:7224274-7224293 Msa0191620:three_prime_UTR 35.0%
!! AAGAGGTACTTACAGCAAAA+GGG + chr2_1:7224343-7224362 None:intergenic 35.0%
!! AAAGAGGTACTTACAGCAAA+AGG + chr2_1:7224344-7224363 None:intergenic 35.0%
!!! TTTTGGGTTTGCAATTCTTG+TGG - chr2_1:7224468-7224487 Msa0191620:intron 35.0%
TAAGTGTAATCACATGTGTC+TGG - chr2_1:7224670-7224689 Msa0191620:intron 35.0%
AAGTGTAATCACATGTGTCT+GGG - chr2_1:7224671-7224690 Msa0191620:intron 35.0%
GTCTATCATTGAACATGGTT+CGG + chr2_1:7224715-7224734 None:intergenic 35.0%
! TGCATCATTATGGTGTCTTT+TGG - chr2_1:7224783-7224802 Msa0191620:intron 35.0%
ACTTCGTAAATGAATCAGAG+CGG + chr2_1:7224824-7224843 None:intergenic 35.0%
! GCAGATTACAACTATGGTTT+TGG - chr2_1:7224964-7224983 Msa0191620:intron 35.0%
TGAATTGAGAAAACGAGAAC+AGG - chr2_1:7225186-7225205 Msa0191620:intron 35.0%
AATGAAATCTTATGGCCTCT+AGG - chr2_1:7225214-7225233 Msa0191620:intron 35.0%
ATGGGCAAAGATAAGGAAAA+AGG + chr2_1:7225273-7225292 None:intergenic 35.0%
TATCAATTAAACACCGGTCT+AGG + chr2_1:7225429-7225448 None:intergenic 35.0%
! CTTCTAAAAAATGCACGTCT+AGG - chr2_1:7225553-7225572 Msa0191620:intron 35.0%
CTATTAACTAACAACCTAGC+TGG - chr2_1:7225603-7225622 Msa0191620:intron 35.0%
CTGAAATTGCTGTGATTAGA+AGG - chr2_1:7225754-7225773 Msa0191620:intron 35.0%
TTAGAAGGTAGTTTGATCTC+TGG - chr2_1:7225769-7225788 Msa0191620:intron 35.0%
GTGTTATCCTCTATAGATCT+TGG - chr2_1:7225814-7225833 Msa0191620:intron 35.0%
TAATAAGAAACAGGCAGTCA+GGG + chr2_1:7225912-7225931 None:intergenic 35.0%
TTAATAAGAAACAGGCAGTC+AGG + chr2_1:7225913-7225932 None:intergenic 35.0%
TCAAAATGCAGGAAGTAAGA+CGG - chr2_1:7225942-7225961 Msa0191620:intron 35.0%
ACATAAACTACCTCGTGAAA+TGG + chr2_1:7225978-7225997 None:intergenic 35.0%
CACAAACAAAGACCAACAAA+GGG + chr2_1:7226032-7226051 None:intergenic 35.0%
ACACAAACAAAGACCAACAA+AGG + chr2_1:7226033-7226052 None:intergenic 35.0%
TGGATAATTGGGAAAAATGG+TGG + chr2_1:7226290-7226309 None:intergenic 35.0%
!! GCGATATCATGATGGATAAT+TGG + chr2_1:7226302-7226321 None:intergenic 35.0%
TTTCATTCGCGATATCATGA+TGG + chr2_1:7226310-7226329 None:intergenic 35.0%
GCACTCAATAAGTAAACAAG+AGG - chr2_1:7226462-7226481 Msa0191620:intron 35.0%
!! TTGCTTTTAATTGGCGTCAA+TGG - chr2_1:7226485-7226504 Msa0191620:intron 35.0%
!!! CCTTGTTTTGTTGAATCTGT+CGG - chr2_1:7226596-7226615 Msa0191620:CDS 35.0%
ATACAATCCATTGGCAATGA+TGG - chr2_1:7226776-7226795 Msa0191620:intron 35.0%
GAGAAGGTCAGTTTAGAAAT+GGG - chr2_1:7226880-7226899 Msa0191620:intron 35.0%
TTTACACCTGTAACAGACAA+GGG + chr2_1:7226964-7226983 None:intergenic 35.0%
! TTTTACACCTGTAACAGACA+AGG + chr2_1:7226965-7226984 None:intergenic 35.0%
CCATTATCTACTTCATAGCA+GGG - chr2_1:7226998-7227017 Msa0191620:intron 35.0%
CATTATCTACTTCATAGCAG+GGG - chr2_1:7226999-7227018 Msa0191620:intron 35.0%
! GACCAGAATTTTGTCATGTT+TGG - chr2_1:7227178-7227197 Msa0191620:intron 35.0%
CACCAAACATGACAAAATTC+TGG + chr2_1:7227183-7227202 None:intergenic 35.0%
TTATCCTTACCAAATGAGAG+AGG - chr2_1:7227277-7227296 Msa0191620:CDS 35.0%
AAAACCTCTCTCATTTGGTA+AGG + chr2_1:7227284-7227303 None:intergenic 35.0%
GTTAGTTAGATTAGAACACC+TGG - chr2_1:7227430-7227449 Msa0191620:intron 35.0%
GTTATCTAAATCCCAACAAC+TGG + chr2_1:7227558-7227577 None:intergenic 35.0%
TTTGTGCCGAAACATTAAGA+AGG - chr2_1:7227579-7227598 Msa0191620:intron 35.0%
!! AACAAAAGCCATTTTCCGTT+AGG + chr2_1:7227657-7227676 None:intergenic 35.0%
ATATCGTGACTAGATAGATG+GGG + chr2_1:7227800-7227819 None:intergenic 35.0%
GATATCGTGACTAGATAGAT+GGG + chr2_1:7227801-7227820 None:intergenic 35.0%
CAGAAAAATCAGCATGTCAA+TGG + chr2_1:7227997-7228016 None:intergenic 35.0%
! TTCTGATTTGATCTTGATCG+TGG - chr2_1:7228012-7228031 Msa0191620:intron 35.0%
!!! TGTTGCTTTGTTACTTTTGC+AGG - chr2_1:7228038-7228057 Msa0191620:intron 35.0%
! ACCGACAGTGCTATTAAATT+TGG - chr2_1:7228061-7228080 Msa0191620:intron 35.0%
! TCCTTTGAAAACTATAGGAG+GGG + chr2_1:7228232-7228251 None:intergenic 35.0%
AATGAAGTCAACTTACGTCA+AGG + chr2_1:7228259-7228278 None:intergenic 35.0%
CAACAGTAGCATGTTAAATG+AGG + chr2_1:7228290-7228309 None:intergenic 35.0%
!! ATGGCTTTATATGTATAGCC+TGG - chr2_1:7228333-7228352 Msa0191620:intron 35.0%
ATCATGTAATACTTCAGCTC+AGG + chr2_1:7228572-7228591 None:intergenic 35.0%
! CGATGTTTTCTCATTGATAC+AGG - chr2_1:7228709-7228728 Msa0191620:intron 35.0%
ATAGTCACCAATCACATCTA+TGG + chr2_1:7228748-7228767 None:intergenic 35.0%
! CGAACATTTCCAATTTGCTT+AGG - chr2_1:7228839-7228858 Msa0191620:intron 35.0%
! ACATTTCCAATTTGCTTAGG+CGG - chr2_1:7228842-7228861 Msa0191620:intron 35.0%
ATAAAACCGCCTAAGCAAAT+TGG + chr2_1:7228851-7228870 None:intergenic 35.0%
GCTTCCAAACAACTGATAAA+TGG - chr2_1:7228960-7228979 Msa0191620:intron 35.0%
! AACAGGTTACAGGTACTTTT+TGG + chr2_1:7229149-7229168 None:intergenic 35.0%
CAAAGAAGTTAACAGGTTAC+AGG + chr2_1:7229159-7229178 None:intergenic 35.0%
CAAGTATATATGTACTTCCG+TGG - chr2_1:7229195-7229214 Msa0191620:intron 35.0%
AACATGCTACCTGTTATATG+TGG - chr2_1:7229400-7229419 Msa0191620:five_prime_UTR 35.0%
!! GTTTAGAGACTTTAGGACAC+AGG + chr2_1:7224072-7224091 None:intergenic 40.0%
! AGAAAGGAGATTTGGGACTT+TGG + chr2_1:7224201-7224220 None:intergenic 40.0%
CAGAGGAGAATACAAGAAAG+TGG + chr2_1:7224248-7224267 None:intergenic 40.0%
! TGTTTCTATCATCTCATGGC+CGG - chr2_1:7224278-7224297 Msa0191620:three_prime_UTR 40.0%
!! TTGACTTGTTCTTCGTCGAA+GGG + chr2_1:7224320-7224339 None:intergenic 40.0%
ACTGCTTACTATGTTTCAGC+TGG - chr2_1:7224511-7224530 Msa0191620:intron 40.0%
TTTGAATCCAACTCCATCAG+AGG - chr2_1:7224600-7224619 Msa0191620:intron 40.0%
TTGAATCCAACTCCATCAGA+GGG - chr2_1:7224601-7224620 Msa0191620:intron 40.0%
AGTGTAATCACATGTGTCTG+GGG - chr2_1:7224672-7224691 Msa0191620:intron 40.0%
! TAAATGAATCAGAGCGGGTT+TGG + chr2_1:7224818-7224837 None:intergenic 40.0%
CTTCGTAAATGAATCAGAGC+GGG + chr2_1:7224823-7224842 None:intergenic 40.0%
TAGTTGTAATCTGCACGTTC+AGG + chr2_1:7224958-7224977 None:intergenic 40.0%
GAACGTGCAGATTACAACTA+TGG - chr2_1:7224958-7224977 Msa0191620:intron 40.0%
TATACCTCTTGATGCATCAG+CGG - chr2_1:7224999-7225018 Msa0191620:intron 40.0%
! TTTTCTCAATTCAGCCTCCT+TGG + chr2_1:7225179-7225198 None:intergenic 40.0%
GTAGAAACAACTACCTAGAC+CGG - chr2_1:7225413-7225432 Msa0191620:intron 40.0%
GAAGACACCAAGATCTATAG+AGG + chr2_1:7225824-7225843 None:intergenic 40.0%
AAAGAAGAAGCCATTTCACG+AGG - chr2_1:7225965-7225984 Msa0191620:intron 40.0%
CATGTGTAGAATGAGTCGAT+TGG + chr2_1:7226130-7226149 None:intergenic 40.0%
AACAGAGCGATTACATGTCA+AGG + chr2_1:7226232-7226251 None:intergenic 40.0%
! TGCAGCTGGAATTGTTATTG+AGG - chr2_1:7226253-7226272 Msa0191620:intron 40.0%
! TGAAGTCTTTGAAGGTGAAC+TGG + chr2_1:7226335-7226354 None:intergenic 40.0%
CCGACAGATTCAACAAAACA+AGG + chr2_1:7226599-7226618 None:intergenic 40.0%
!! TGTTTTGTTGAATCTGTCGG+TGG - chr2_1:7226599-7226618 Msa0191620:CDS 40.0%
TCATCAACCATCATTGCCAA+TGG + chr2_1:7226786-7226805 None:intergenic 40.0%
CAGCTACAACATTCCATGTA+AGG + chr2_1:7226839-7226858 None:intergenic 40.0%
TTCTCCTTTAATCCAAGCTG+CGG + chr2_1:7226865-7226884 None:intergenic 40.0%
GGAGAAGGTCAGTTTAGAAA+TGG - chr2_1:7226879-7226898 Msa0191620:intron 40.0%
GCCATTATCTACTTCATAGC+AGG - chr2_1:7226997-7227016 Msa0191620:intron 40.0%
CCCTGCTATGAAGTAGATAA+TGG + chr2_1:7227001-7227020 None:intergenic 40.0%
GAACACCTGGTTAAATAGAG+AGG - chr2_1:7227443-7227462 Msa0191620:intron 40.0%
ACCTGGTTAAATAGAGAGGT+TGG - chr2_1:7227447-7227466 Msa0191620:intron 40.0%
TCCAACCTCTCTATTTAACC+AGG + chr2_1:7227451-7227470 None:intergenic 40.0%
GGTTAAATAGAGAGGTTGGA+AGG - chr2_1:7227451-7227470 Msa0191620:intron 40.0%
ATAATAGAAGTCGAAGGGAG+CGG - chr2_1:7227493-7227512 Msa0191620:intron 40.0%
!! AAAAGCCATTTTCCGTTAGG+TGG + chr2_1:7227654-7227673 None:intergenic 40.0%
GGATATCGTGACTAGATAGA+TGG + chr2_1:7227802-7227821 None:intergenic 40.0%
TCAACAAGGTCACTAGCTAA+GGG + chr2_1:7227823-7227842 None:intergenic 40.0%
TTCAACAAGGTCACTAGCTA+AGG + chr2_1:7227824-7227843 None:intergenic 40.0%
TGCACAATCTTGCTACATCA+GGG + chr2_1:7227969-7227988 None:intergenic 40.0%
ATGCACAATCTTGCTACATC+AGG + chr2_1:7227970-7227989 None:intergenic 40.0%
AAAATCAGCATGTCAATGGC+TGG + chr2_1:7227993-7228012 None:intergenic 40.0%
TCCATGTACTCAACCCTATT+TGG - chr2_1:7228418-7228437 Msa0191620:CDS 40.0%
ACCAAATAGGGTTGAGTACA+TGG + chr2_1:7228422-7228441 None:intergenic 40.0%
AGTTAGACTGATGCACATGT+TGG - chr2_1:7228609-7228628 Msa0191620:CDS 40.0%
! GATGCACATGTTGGTAAAAG+TGG - chr2_1:7228618-7228637 Msa0191620:CDS 40.0%
GTATATATGTACTTCCGTGG+CGG - chr2_1:7229198-7229217 Msa0191620:intron 40.0%
TAAGACTGCTGAGATGAAGA+GGG - chr2_1:7229224-7229243 Msa0191620:intron 40.0%
!! GAGACTTTAGGACACAGGAA+GGG + chr2_1:7224067-7224086 None:intergenic 45.0%
!! AGAGACTTTAGGACACAGGA+AGG + chr2_1:7224068-7224087 None:intergenic 45.0%
AGAAACAAGCAAGCAAGCAG+AGG + chr2_1:7224265-7224284 None:intergenic 45.0%
!! TGACTTGTTCTTCGTCGAAG+GGG + chr2_1:7224319-7224338 None:intergenic 45.0%
!! GTTGACTTGTTCTTCGTCGA+AGG + chr2_1:7224321-7224340 None:intergenic 45.0%
GTGTAATCACATGTGTCTGG+GGG - chr2_1:7224673-7224692 Msa0191620:intron 45.0%
! TCATTGAACATGGTTCGGCT+TGG + chr2_1:7224710-7224729 None:intergenic 45.0%
! AGGTCTAGAATTTGTGGCAG+GGG + chr2_1:7224923-7224942 None:intergenic 45.0%
! CAGGTCTAGAATTTGTGGCA+GGG + chr2_1:7224924-7224943 None:intergenic 45.0%
! AGGTGCAGGTCTAGAATTTG+TGG + chr2_1:7224929-7224948 None:intergenic 45.0%
TCTGCACGTTCAGGATTAAG+AGG + chr2_1:7224949-7224968 None:intergenic 45.0%
AAAATGCACGTCTAGGGACT+TGG - chr2_1:7225560-7225579 Msa0191620:intron 45.0%
! TAATCGCTCTGTTTTGCAGC+TGG - chr2_1:7226239-7226258 Msa0191620:intron 45.0%
CCACGAGAAGAAAACAAGAC+AGG + chr2_1:7226393-7226412 None:intergenic 45.0%
!!! CCTGTCTTGTTTTCTTCTCG+TGG - chr2_1:7226390-7226409 Msa0191620:intron 45.0%
CAAACCAATAACCATCCCCA+CGG + chr2_1:7226416-7226435 None:intergenic 45.0%
GGTTAGTGTTGTGCCTTACA+TGG - chr2_1:7226823-7226842 Msa0191620:intron 45.0%
GCAGCTTGGATTAAAGGAGA+AGG - chr2_1:7226864-7226883 Msa0191620:intron 45.0%
TGATAGCCAACTCCACCTAA+CGG - chr2_1:7227639-7227658 Msa0191620:intron 45.0%
! CATTTTCCGTTAGGTGGAGT+TGG + chr2_1:7227648-7227667 None:intergenic 45.0%
CAACTCCACCTAACGGAAAA+TGG - chr2_1:7227646-7227665 Msa0191620:intron 45.0%
TTCTGCTTACAGCTTCACCT+TGG - chr2_1:7228183-7228202 Msa0191620:intron 45.0%
TCTGCTTACAGCTTCACCTT+GGG - chr2_1:7228184-7228203 Msa0191620:intron 45.0%
CAGCTAAGATACAGAACCCA+AGG + chr2_1:7228203-7228222 None:intergenic 45.0%
! GCCCCTCCTATAGTTTTCAA+AGG - chr2_1:7228228-7228247 Msa0191620:intron 45.0%
CTGTCAGCCATAGATGTGAT+TGG - chr2_1:7228738-7228757 Msa0191620:intron 45.0%
GTAAGACTGCTGAGATGAAG+AGG - chr2_1:7229223-7229242 Msa0191620:intron 45.0%
! TACGATGAAGCACCTTCTGA+AGG - chr2_1:7229277-7229296 Msa0191620:CDS 45.0%
AACTAAGCTGCTCCCTCTGA+TGG + chr2_1:7224616-7224635 None:intergenic 50.0%
CAGAGGGAGCAGCTTAGTTA+TGG - chr2_1:7224617-7224636 Msa0191620:intron 50.0%
!! ACATGGTTCGGCTTGGATCA+CGG + chr2_1:7224703-7224722 None:intergenic 50.0%
! GCAGGTCTAGAATTTGTGGC+AGG + chr2_1:7224925-7224944 None:intergenic 50.0%
! CGTTCAGGATTAAGAGGTGC+AGG + chr2_1:7224943-7224962 None:intergenic 50.0%
CATACCGCTGATGCATCAAG+AGG + chr2_1:7225006-7225025 None:intergenic 50.0%
GGAAAGAGAACTCCAAGCCA+AGG - chr2_1:7225159-7225178 Msa0191620:intron 50.0%
AAGAGAACTCCAAGCCAAGG+AGG - chr2_1:7225162-7225181 Msa0191620:intron 50.0%
TCAATTCAGCCTCCTTGGCT+TGG + chr2_1:7225174-7225193 None:intergenic 50.0%
! TTGTTTTCTTCTCGTGGCCG+TGG - chr2_1:7226396-7226415 Msa0191620:intron 50.0%
! TGTTTTCTTCTCGTGGCCGT+GGG - chr2_1:7226397-7226416 Msa0191620:intron 50.0%
GTCACCGCAGCTTGGATTAA+AGG - chr2_1:7226858-7226877 Msa0191620:intron 50.0%
AACTCGCCCTTGTCTGTTAC+AGG - chr2_1:7226955-7226974 Msa0191620:intron 50.0%
TACTTCATAGCAGGGGTTCC+TGG - chr2_1:7227006-7227025 Msa0191620:intron 50.0%
TTCCTGGAGCATATGTCCTG+TGG - chr2_1:7227022-7227041 Msa0191620:intron 50.0%
TACCACAGGACATATGCTCC+AGG + chr2_1:7227027-7227046 None:intergenic 50.0%
TGAGCAGTGACCCAGTTGTT+GGG - chr2_1:7227544-7227563 Msa0191620:intron 50.0%
GTGACCTTGTTGAAATGCCC+AGG - chr2_1:7227830-7227849 Msa0191620:intron 50.0%
TCAGCCTGGGCATTTCAACA+AGG + chr2_1:7227837-7227856 None:intergenic 50.0%
CATGTTACGTTACGGTCTCG+CGG - chr2_1:7227907-7227926 Msa0191620:intron 50.0%
ATGTTACGTTACGGTCTCGC+GGG - chr2_1:7227908-7227927 Msa0191620:intron 50.0%
TACATCAGGGATCAAGCCCA+GGG + chr2_1:7227956-7227975 None:intergenic 50.0%
TATATGTACTTCCGTGGCGG+TGG - chr2_1:7229201-7229220 Msa0191620:intron 50.0%
ATGAAGAGGGAAGCTGCACT+AGG - chr2_1:7229237-7229256 Msa0191620:intron 50.0%
GAAGCTGCACTAGGAGCAAT+GGG - chr2_1:7229246-7229265 Msa0191620:intron 50.0%
AAGCTGCACTAGGAGCAATG+GGG - chr2_1:7229247-7229266 Msa0191620:intron 50.0%
GGGGTTACTGTCGTAACGAC+CGG + chr2_1:7224300-7224319 None:intergenic 55.0%
! GTTTTCTTCTCGTGGCCGTG+GGG - chr2_1:7226398-7226417 Msa0191620:intron 55.0%
AGTGCTACCTCGCTCTGTGT+GGG + chr2_1:7226447-7226466 None:intergenic 55.0%
TTGTAGCTGTCACCGCAGCT+TGG - chr2_1:7226850-7226869 Msa0191620:intron 55.0%
CTGAGCAGTGACCCAGTTGT+TGG - chr2_1:7227543-7227562 Msa0191620:intron 55.0%
CTACATCAGGGATCAAGCCC+AGG + chr2_1:7227957-7227976 None:intergenic 55.0%
GGAAGCTGCACTAGGAGCAA+TGG - chr2_1:7229245-7229264 Msa0191620:intron 55.0%
AGCTGCACTAGGAGCAATGG+GGG - chr2_1:7229248-7229267 Msa0191620:intron 55.0%
GCTGCTCCCTCTGATGGAGT+TGG + chr2_1:7224610-7224629 None:intergenic 60.0%
TGACGCAGACGCGCATCTAG+TGG - chr2_1:7225493-7225512 Msa0191620:intron 60.0%
GTGGCCGTGGGGATGGTTAT+TGG - chr2_1:7226409-7226428 Msa0191620:intron 60.0%
TACCTCGCTCTGTGTGGGTG+CGG + chr2_1:7226442-7226461 None:intergenic 60.0%
GAGTGCTACCTCGCTCTGTG+TGG + chr2_1:7226448-7226467 None:intergenic 60.0%
TCAGGGATCAAGCCCAGGGA+GGG + chr2_1:7227952-7227971 None:intergenic 60.0%
ATCAGGGATCAAGCCCAGGG+AGG + chr2_1:7227953-7227972 None:intergenic 60.0%
CAGCAGTCTTACCACCGCCA+CGG + chr2_1:7229215-7229234 None:intergenic 60.0%
TCTTCTCGTGGCCGTGGGGA+TGG - chr2_1:7226402-7226421 Msa0191620:intron 65.0%
ACCTCGCTCTGTGTGGGTGC+GGG + chr2_1:7226441-7226460 None:intergenic 65.0%
AGGGAGGGGAACACCAGAGG+GGG + chr2_1:7227937-7227956 None:intergenic 65.0%
CAGGGAGGGGAACACCAGAG+GGG + chr2_1:7227938-7227957 None:intergenic 65.0%
CCAGGGAGGGGAACACCAGA+GGG + chr2_1:7227939-7227958 None:intergenic 65.0%
CCTCTGGTGTTCCCCTCCCT+GGG - chr2_1:7227937-7227956 Msa0191620:intron 65.0%
CAGGGATCAAGCCCAGGGAG+GGG + chr2_1:7227951-7227970 None:intergenic 65.0%
CCCTCTGGTGTTCCCCTCCC+TGG - chr2_1:7227936-7227955 Msa0191620:intron 70.0%
CCCAGGGAGGGGAACACCAG+AGG + chr2_1:7227940-7227959 None:intergenic 70.0%
GCCCGCACCCACACAGAGCG+AGG - chr2_1:7226437-7226456 Msa0191620:intron 75.0%
GTCTCGCGGGTCACCCCCTC+TGG - chr2_1:7227921-7227940 Msa0191620:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7224054 7229554 7224054 ID=Msa0191620;Name=Msa0191620
chr2_1 mRNA 7224054 7229554 7224054 ID=Msa0191620-mRNA-1;Parent=Msa0191620;Name=Msa0191620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=239|1|1|1|1|1|12|270|289
chr2_1 exon 7224054 7224413 7224054 ID=Msa0191620-mRNA-1:exon:3314;Parent=Msa0191620-mRNA-1
chr2_1 exon 7224534 7224599 7224534 ID=Msa0191620-mRNA-1:exon:3313;Parent=Msa0191620-mRNA-1
chr2_1 exon 7224829 7224877 7224829 ID=Msa0191620-mRNA-1:exon:3312;Parent=Msa0191620-mRNA-1
chr2_1 exon 7225346 7225413 7225346 ID=Msa0191620-mRNA-1:exon:3311;Parent=Msa0191620-mRNA-1
chr2_1 exon 7225503 7225548 7225503 ID=Msa0191620-mRNA-1:exon:3310;Parent=Msa0191620-mRNA-1
chr2_1 exon 7226538 7226631 7226538 ID=Msa0191620-mRNA-1:exon:3309;Parent=Msa0191620-mRNA-1
chr2_1 exon 7226723 7226785 7226723 ID=Msa0191620-mRNA-1:exon:3308;Parent=Msa0191620-mRNA-1
chr2_1 exon 7227228 7227350 7227228 ID=Msa0191620-mRNA-1:exon:3307;Parent=Msa0191620-mRNA-1
chr2_1 exon 7227622 7227655 7227622 ID=Msa0191620-mRNA-1:exon:3306;Parent=Msa0191620-mRNA-1
chr2_1 exon 7228401 7228463 7228401 ID=Msa0191620-mRNA-1:exon:3305;Parent=Msa0191620-mRNA-1
chr2_1 exon 7228588 7228704 7228588 ID=Msa0191620-mRNA-1:exon:3304;Parent=Msa0191620-mRNA-1
chr2_1 exon 7229259 7229554 7229259 ID=Msa0191620-mRNA-1:exon:3303;Parent=Msa0191620-mRNA-1
chr2_1 five_prime_UTR 7229316 7229554 7229316 ID=Msa0191620-mRNA-1:five_prime_utr;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7229259 7229315 7229259 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7228588 7228704 7228588 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7228401 7228463 7228401 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7227622 7227655 7227622 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7227228 7227350 7227228 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7226723 7226785 7226723 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7226538 7226631 7226538 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7225503 7225548 7225503 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7225346 7225413 7225346 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7224829 7224877 7224829 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7224534 7224599 7224534 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 CDS 7224324 7224413 7224324 ID=Msa0191620-mRNA-1:cds;Parent=Msa0191620-mRNA-1
chr2_1 three_prime_UTR 7224054 7224323 7224054 ID=Msa0191620-mRNA-1:three_prime_utr;Parent=Msa0191620-mRNA-1
Gene Sequence

>Msa0191620

ATGGCCGGTCGTTACGACAGTAACCCCTTCGACGAAGAACAAGTCAACCCTTTTGCTAATTCTGGAGGTGTTGCCCCTGCCACAAATTCTAGACCTGCACCTCTTAATCCTGAACGTGCAGATTACAACTATGGTTTTGGGCAGACAGTTGATATACCTCTTGATGCATCAGCGGATGTGAAAAAGAAGGAAAGAGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAACGAGAACAGGAAGTAAGACGGAAAGAAGAAGCCATTTCACGAGCTGGAATTGTTATTGAGGAGAAGAATTGGCCACCATTTTTCCCAATTATCCATCATGATATCGCGAATGAAATTCCAGTTCACCTTCAAAGACTTCAATATGTTGCATTTTTTTCGTTGTTAGGGTTAGTGTTGTGCCTTACATGGAATGTTGTAGCTGTCACCGCAGCTTGGATTAAAGGAGAAGGTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTTCCTGGAGCATATGTCCTGTGGTATAAACCATTATATCGTGCATTTAGGACCGACAGTGCTATTAAATTTGGATGGTTTTTTCTGTTTTACCTGCTTCACCTTGGGTTCTGTATCTTAGCTGCTGTTGCCCCTCCTATAGTTTTCAAAGGAAAATCCTTGACGGGCATTCTGTCAGCCATAGATGTGATTGGTGACTATACTATTATTGGGATTTTCTACTTCATTGGATTTGGATTGTTCTGTCTTGAAACATTGGTCAGCGTCTGGGTTATCCAGCAAGTATATATGTACTTCCGTGGCGGTGGTAAGACTGCTGAGATGAAGAGGGAAGCTGCACTAGGAGCAATGGGGGCTGCTCTACGATGA

Protein sequence

>Msa0191620

MAGRYDSNPFDEEQVNPFANSGGVAPATNSRPAPLNPERADYNYGFGQTVDIPLDASADVKKKERELQAKEAELRKREQEVRRKEEAISRAGIVIEEKNWPPFFPIIHHDIANEIPVHLQRLQYVAFFSLLGLVLCLTWNVVAVTAAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYKPLYRAFRTDSAIKFGWFFLFYLLHLGFCILAAVAPPIVFKGKSLTGILSAIDVIGDYTIIGIFYFIGFGLFCLETLVSVWVIQQVYMYFRGGGKTAEMKREAALGAMGAALR*