AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205560 MtrunA17_Chr4g0054781 99.127 229 2 0 1 229 1 229 1.20e-171 471
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205560 AT1G32520.1 73.640 239 53 7 1 229 1 239 6.73e-121 343

Find 69 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTCCATATTGTTTATT+TGG 0.118956 8_1:-61900137 Msa1205560:CDS
CTCGTGGTGGGCCGCAATTC+GGG 0.179176 8_1:-61899361 Msa1205560:CDS
CTAGTATAAACTTGCAATTT+TGG 0.195899 8_1:+61899136 None:intergenic
TTTATACTAGAACTTCATTA+TGG 0.206923 8_1:-61899123 Msa1205560:exon
CCAACCTTAGGCAAAATTAT+TGG 0.222718 8_1:+61899413 None:intergenic
GCTGGGCCTGATACTAATTC+TGG 0.242393 8_1:-61899287 Msa1205560:CDS
CTCCTTGCCATCTTCCCTTT+TGG 0.242724 8_1:+61899217 None:intergenic
GCTCGTGGTGGGCCGCAATT+CGG 0.257783 8_1:-61899362 Msa1205560:CDS
AAAGGGCCATGTGTAATAAT+AGG 0.265542 8_1:-61899554 Msa1205560:CDS
CCAGCAAAACCACCCATAAC+TGG 0.267578 8_1:+61899305 None:intergenic
TCTGTGCTTCTATATCCTTC+AGG 0.271435 8_1:+61899494 None:intergenic
CACCCATAACTGGGGCTAAT+GGG 0.279555 8_1:+61899315 None:intergenic
TGAATAGTGTTAATTAGTTT+TGG 0.305439 8_1:-61900215 Msa1205560:five_prime_UTR
AATGGTCTATAATTCGGATT+TGG 0.308738 8_1:-61898788 Msa1205560:three_prime_UTR
TTCCAACCAAATAAACAATA+TGG 0.321938 8_1:+61900131 None:intergenic
CCACCCATAACTGGGGCTAA+TGG 0.338213 8_1:+61899314 None:intergenic
ACAGACAACTCTTTCAAGTT+TGG 0.342835 8_1:-61899527 Msa1205560:CDS
TTGTCACCGATTTAGACTTT+TGG 0.347040 8_1:-61899042 Msa1205560:three_prime_UTR
GGGCTGATGGGCTTCTCATC+GGG 0.359617 8_1:-61899340 Msa1205560:CDS
GGGCCGCAATTCGGGGCTGA+TGG 0.364713 8_1:-61899353 Msa1205560:CDS
GGGGCTGATGGGCTTCTCAT+CGG 0.389344 8_1:-61899341 Msa1205560:CDS
TTATACTAGAACTTCATTAT+GGG 0.390045 8_1:-61899122 Msa1205560:exon
GTGTCTAATGGTCTATAATT+CGG 0.407046 8_1:-61898794 Msa1205560:three_prime_UTR
CTGTGCTTCTATATCCTTCA+GGG 0.408081 8_1:+61899495 None:intergenic
GTCCATATTGTTTATTTGGT+TGG 0.412950 8_1:-61900133 Msa1205560:CDS
ATAAGTAGTTGTATCCTTCA+AGG 0.417109 8_1:-61898828 Msa1205560:three_prime_UTR
GAGACAAGCCAAGTCTAGAT+TGG 0.419344 8_1:-61899252 Msa1205560:CDS
TTGCCTAAGGTTGGTGGCAG+TGG 0.427431 8_1:-61899404 Msa1205560:CDS
GAATTCAAATTCATCAGTAT+TGG 0.432445 8_1:+61899085 None:intergenic
CTTGATCCAAAAGTCTAAAT+CGG 0.434028 8_1:+61899036 None:intergenic
ACAAATCACATACTATTTCA+TGG 0.441288 8_1:+61898862 None:intergenic
CACACATTTACATACCTTGA+AGG 0.443249 8_1:+61898814 None:intergenic
TGCTACAGGGCAACAATTGA+TGG 0.444287 8_1:-61899614 Msa1205560:CDS
ATACGGATAAGATGATGAAT+TGG 0.445369 8_1:-61900268 Msa1205560:five_prime_UTR
TTACTTTATGAAAACAAATA+CGG 0.456634 8_1:-61900285 Msa1205560:five_prime_UTR
TGTTTATTTGGTTGGAACAT+AGG 0.460604 8_1:-61900125 Msa1205560:CDS
AGACAAGCCAAGTCTAGATT+GGG 0.460900 8_1:-61899251 Msa1205560:CDS
AGGAACTGAAATGCTGCTAC+AGG 0.463256 8_1:-61899628 Msa1205560:CDS
TGGGATTGTCTTATGCCAAA+AGG 0.463760 8_1:-61899232 Msa1205560:CDS
GCACCACTGCCACCAACCTT+AGG 0.472228 8_1:+61899401 None:intergenic
CAGCAAAACCACCCATAACT+GGG 0.479885 8_1:+61899306 None:intergenic
CCAACACCAGAATTAGTATC+AGG 0.485918 8_1:+61899281 None:intergenic
GGGATTGTCTTATGCCAAAA+GGG 0.500151 8_1:-61899231 Msa1205560:CDS
ACCCATAACTGGGGCTAATG+GGG 0.505857 8_1:+61899316 None:intergenic
GTATGTAAATGTGTGTCTAA+TGG 0.517943 8_1:-61898806 Msa1205560:three_prime_UTR
TAGAACTTCATTATGGGGTA+AGG 0.524780 8_1:-61899116 Msa1205560:three_prime_UTR
CTTTAAAATCACAACATTGG+TGG 0.526175 8_1:+61899573 None:intergenic
AGCCCATCAGCCCCGAATTG+CGG 0.532569 8_1:+61899350 None:intergenic
TCTTATGCCAAAAGGGAAGA+TGG 0.539221 8_1:-61899224 Msa1205560:CDS
ATGTGATTGTACACATCGTA+AGG 0.542479 8_1:-61898947 Msa1205560:three_prime_UTR
TTTGGTGCATTTAACCCTGA+AGG 0.542646 8_1:-61899509 Msa1205560:CDS
TATACTAGAACTTCATTATG+GGG 0.545441 8_1:-61899121 Msa1205560:exon
CTGTTTGATTATGCTCGTGG+TGG 0.546126 8_1:-61899374 Msa1205560:CDS
CCTGATACTAATTCTGGTGT+TGG 0.548121 8_1:-61899281 Msa1205560:CDS
CAAATTCTCTATCATTCCAA+TGG 0.552919 8_1:-61900166 Msa1205560:CDS
GCCCTTTAAAATCACAACAT+TGG 0.553032 8_1:+61899570 None:intergenic
ATATCATGATATTTAATCTG+AGG 0.554912 8_1:+61900080 None:intergenic
AGTGGTGGAAATGCATTACA+TGG 0.555320 8_1:-61900239 Msa1205560:five_prime_UTR
TGCCAAAAGGGAAGATGGCA+AGG 0.559565 8_1:-61899219 Msa1205560:CDS
CCATTAGCCCCAGTTATGGG+TGG 0.560552 8_1:-61899314 Msa1205560:CDS
TCGTGGTGGGCCGCAATTCG+GGG 0.563936 8_1:-61899360 Msa1205560:CDS
TGTTTGATTATGCTCGTGGT+GGG 0.570159 8_1:-61899373 Msa1205560:CDS
AGACAATCCCAATCTAGACT+TGG 0.587589 8_1:+61899244 None:intergenic
CCCATAACTGGGGCTAATGG+GGG 0.595547 8_1:+61899317 None:intergenic
ATTCTCTATCATTCCAATGG+AGG 0.609397 8_1:-61900163 Msa1205560:CDS
GCTCTGTTTGATTATGCTCG+TGG 0.617447 8_1:-61899377 Msa1205560:CDS
GGAACTGAAATGCTGCTACA+GGG 0.624888 8_1:-61899627 Msa1205560:CDS
GTGTAACCTATTATTACACA+TGG 0.631481 8_1:+61899548 None:intergenic
AGCAAAACCACCCATAACTG+GGG 0.696608 8_1:+61899307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATACACAATAAAAAAAAT+CGG + chr8_1:61899100-61899119 None:intergenic 10.0%
!! TTATACACAATAAAAAAAAT+CGG + chr8_1:61899100-61899119 None:intergenic 10.0%
!! TTACTTTATGAAAACAAATA+CGG - chr8_1:61898724-61898743 Msa1205560:three_prime_UTR 15.0%
!! AATAAAAAAAATCGGATAAA+CGG + chr8_1:61899092-61899111 None:intergenic 15.0%
!!! TTTAAATTTGAAAAAGTATC+TGG - chr8_1:61899189-61899208 Msa1205560:CDS 15.0%
!! TTACTTTATGAAAACAAATA+CGG - chr8_1:61898724-61898743 Msa1205560:three_prime_UTR 15.0%
!! AATAAAAAAAATCGGATAAA+CGG + chr8_1:61899092-61899111 None:intergenic 15.0%
!!! TTTAAATTTGAAAAAGTATC+TGG - chr8_1:61899189-61899208 Msa1205560:CDS 15.0%
!!! TGAATAGTGTTAATTAGTTT+TGG - chr8_1:61898794-61898813 Msa1205560:three_prime_UTR 20.0%
!! ATATCATGATATTTAATCTG+AGG + chr8_1:61898932-61898951 None:intergenic 20.0%
!!! GTTAACAAAACATTTTTGAA+AGG - chr8_1:61898977-61898996 Msa1205560:three_prime_UTR 20.0%
!! TGAATATGTTACTACTATTT+AGG - chr8_1:61899063-61899082 Msa1205560:three_prime_UTR 20.0%
!! AATTCCAAAACTAATTTAGT+TGG + chr8_1:61899143-61899162 None:intergenic 20.0%
!!! GTTATATCAGTTTATCATTT+TGG + chr8_1:61899292-61899311 None:intergenic 20.0%
!! TATTTAATGTTATCATCCTT+AGG - chr8_1:61899315-61899334 Msa1205560:CDS 20.0%
!!! TTGATGCATTTCTATTTTAT+TGG - chr8_1:61899555-61899574 Msa1205560:CDS 20.0%
!!! TGATGCATTTCTATTTTATT+GGG - chr8_1:61899556-61899575 Msa1205560:CDS 20.0%
!!! TAGTATAAACTTGCAATTTT+GGG + chr8_1:61899875-61899894 None:intergenic 20.0%
!! TTTATACTAGAACTTCATTA+TGG - chr8_1:61899886-61899905 Msa1205560:intron 20.0%
!! TTATACTAGAACTTCATTAT+GGG - chr8_1:61899887-61899906 Msa1205560:intron 20.0%
!!! TGAATAGTGTTAATTAGTTT+TGG - chr8_1:61898794-61898813 Msa1205560:three_prime_UTR 20.0%
!! ATATCATGATATTTAATCTG+AGG + chr8_1:61898932-61898951 None:intergenic 20.0%
!!! GTTAACAAAACATTTTTGAA+AGG - chr8_1:61898977-61898996 Msa1205560:three_prime_UTR 20.0%
!! TGAATATGTTACTACTATTT+AGG - chr8_1:61899063-61899082 Msa1205560:three_prime_UTR 20.0%
!! AATTCCAAAACTAATTTAGT+TGG + chr8_1:61899143-61899162 None:intergenic 20.0%
!!! GTTATATCAGTTTATCATTT+TGG + chr8_1:61899292-61899311 None:intergenic 20.0%
!! TATTTAATGTTATCATCCTT+AGG - chr8_1:61899315-61899334 Msa1205560:CDS 20.0%
!!! TTGATGCATTTCTATTTTAT+TGG - chr8_1:61899555-61899574 Msa1205560:CDS 20.0%
!!! TGATGCATTTCTATTTTATT+GGG - chr8_1:61899556-61899575 Msa1205560:CDS 20.0%
!!! TAGTATAAACTTGCAATTTT+GGG + chr8_1:61899875-61899894 None:intergenic 20.0%
!! TTTATACTAGAACTTCATTA+TGG - chr8_1:61899886-61899905 Msa1205560:intron 20.0%
!! TTATACTAGAACTTCATTAT+GGG - chr8_1:61899887-61899906 Msa1205560:intron 20.0%
! ACAAGTCCATATTGTTTATT+TGG - chr8_1:61898872-61898891 Msa1205560:three_prime_UTR 25.0%
! TTCCAACCAAATAAACAATA+TGG + chr8_1:61898881-61898900 None:intergenic 25.0%
!!! GTATCCAACTAAATTAGTTT+TGG - chr8_1:61899136-61899155 Msa1205560:CDS 25.0%
!! TTTGGAATTCCTCTTAATTA+TGG - chr8_1:61899154-61899173 Msa1205560:CDS 25.0%
! AAATCTACACCATAATTAAG+AGG + chr8_1:61899166-61899185 None:intergenic 25.0%
!!! GTTTTGACAAAATTTTGATC+AGG - chr8_1:61899356-61899375 Msa1205560:CDS 25.0%
!! ACCAATGTTGTGATTTTAAA+GGG - chr8_1:61899438-61899457 Msa1205560:CDS 25.0%
!! AGTATAAACTTGCAATTTTG+GGG + chr8_1:61899874-61899893 None:intergenic 25.0%
!! CTAGTATAAACTTGCAATTT+TGG + chr8_1:61899876-61899895 None:intergenic 25.0%
! TATACTAGAACTTCATTATG+GGG - chr8_1:61899888-61899907 Msa1205560:intron 25.0%
! GAATTCAAATTCATCAGTAT+TGG + chr8_1:61899927-61899946 None:intergenic 25.0%
! ACAAATCACATACTATTTCA+TGG + chr8_1:61900150-61900169 None:intergenic 25.0%
! ACAAGTCCATATTGTTTATT+TGG - chr8_1:61898872-61898891 Msa1205560:three_prime_UTR 25.0%
! TTCCAACCAAATAAACAATA+TGG + chr8_1:61898881-61898900 None:intergenic 25.0%
!!! GTATCCAACTAAATTAGTTT+TGG - chr8_1:61899136-61899155 Msa1205560:CDS 25.0%
!! TTTGGAATTCCTCTTAATTA+TGG - chr8_1:61899154-61899173 Msa1205560:CDS 25.0%
! AAATCTACACCATAATTAAG+AGG + chr8_1:61899166-61899185 None:intergenic 25.0%
!!! GTTTTGACAAAATTTTGATC+AGG - chr8_1:61899356-61899375 Msa1205560:CDS 25.0%
!! ACCAATGTTGTGATTTTAAA+GGG - chr8_1:61899438-61899457 Msa1205560:CDS 25.0%
!! AGTATAAACTTGCAATTTTG+GGG + chr8_1:61899874-61899893 None:intergenic 25.0%
!! CTAGTATAAACTTGCAATTT+TGG + chr8_1:61899876-61899895 None:intergenic 25.0%
! TATACTAGAACTTCATTATG+GGG - chr8_1:61899888-61899907 Msa1205560:intron 25.0%
! GAATTCAAATTCATCAGTAT+TGG + chr8_1:61899927-61899946 None:intergenic 25.0%
! ACAAATCACATACTATTTCA+TGG + chr8_1:61900150-61900169 None:intergenic 25.0%
ATACGGATAAGATGATGAAT+TGG - chr8_1:61898741-61898760 Msa1205560:three_prime_UTR 30.0%
!! ATGATGAATTGGTGTTTTAG+TGG - chr8_1:61898752-61898771 Msa1205560:three_prime_UTR 30.0%
!!! TAATTAGTTTTGGTCATCTG+CGG - chr8_1:61898804-61898823 Msa1205560:three_prime_UTR 30.0%
CAAATTCTCTATCATTCCAA+TGG - chr8_1:61898843-61898862 Msa1205560:three_prime_UTR 30.0%
GTCCATATTGTTTATTTGGT+TGG - chr8_1:61898876-61898895 Msa1205560:three_prime_UTR 30.0%
TGTTTATTTGGTTGGAACAT+AGG - chr8_1:61898884-61898903 Msa1205560:three_prime_UTR 30.0%
ACAAATACATGTAAAGCCTA+AGG + chr8_1:61899334-61899353 None:intergenic 30.0%
!! GACAAAATTTTGATCAGGTA+AGG - chr8_1:61899361-61899380 Msa1205560:CDS 30.0%
!! CTTTAAAATCACAACATTGG+TGG + chr8_1:61899439-61899458 None:intergenic 30.0%
! CACCAATGTTGTGATTTTAA+AGG - chr8_1:61899437-61899456 Msa1205560:CDS 30.0%
GTGTAACCTATTATTACACA+TGG + chr8_1:61899464-61899483 None:intergenic 30.0%
! TGAACCAATAATTTTGCCTA+AGG - chr8_1:61899592-61899611 Msa1205560:CDS 30.0%
!!! TATTTTTGGTGATGAGTCTA+GGG - chr8_1:61899817-61899836 Msa1205560:intron 30.0%
CTTGATCCAAAAGTCTAAAT+CGG + chr8_1:61899976-61899995 None:intergenic 30.0%
ATAAGTAGTTGTATCCTTCA+AGG - chr8_1:61900181-61900200 Msa1205560:CDS 30.0%
GTATGTAAATGTGTGTCTAA+TGG - chr8_1:61900203-61900222 Msa1205560:exon 30.0%
GTGTCTAATGGTCTATAATT+CGG - chr8_1:61900215-61900234 Msa1205560:five_prime_UTR 30.0%
AATGGTCTATAATTCGGATT+TGG - chr8_1:61900221-61900240 Msa1205560:five_prime_UTR 30.0%
ATACGGATAAGATGATGAAT+TGG - chr8_1:61898741-61898760 Msa1205560:three_prime_UTR 30.0%
!! ATGATGAATTGGTGTTTTAG+TGG - chr8_1:61898752-61898771 Msa1205560:three_prime_UTR 30.0%
!!! TAATTAGTTTTGGTCATCTG+CGG - chr8_1:61898804-61898823 Msa1205560:three_prime_UTR 30.0%
CAAATTCTCTATCATTCCAA+TGG - chr8_1:61898843-61898862 Msa1205560:three_prime_UTR 30.0%
GTCCATATTGTTTATTTGGT+TGG - chr8_1:61898876-61898895 Msa1205560:three_prime_UTR 30.0%
TGTTTATTTGGTTGGAACAT+AGG - chr8_1:61898884-61898903 Msa1205560:three_prime_UTR 30.0%
ACAAATACATGTAAAGCCTA+AGG + chr8_1:61899334-61899353 None:intergenic 30.0%
!! GACAAAATTTTGATCAGGTA+AGG - chr8_1:61899361-61899380 Msa1205560:CDS 30.0%
!! CTTTAAAATCACAACATTGG+TGG + chr8_1:61899439-61899458 None:intergenic 30.0%
! CACCAATGTTGTGATTTTAA+AGG - chr8_1:61899437-61899456 Msa1205560:CDS 30.0%
GTGTAACCTATTATTACACA+TGG + chr8_1:61899464-61899483 None:intergenic 30.0%
! TGAACCAATAATTTTGCCTA+AGG - chr8_1:61899592-61899611 Msa1205560:CDS 30.0%
!!! TATTTTTGGTGATGAGTCTA+GGG - chr8_1:61899817-61899836 Msa1205560:intron 30.0%
CTTGATCCAAAAGTCTAAAT+CGG + chr8_1:61899976-61899995 None:intergenic 30.0%
ATAAGTAGTTGTATCCTTCA+AGG - chr8_1:61900181-61900200 Msa1205560:CDS 30.0%
GTATGTAAATGTGTGTCTAA+TGG - chr8_1:61900203-61900222 Msa1205560:exon 30.0%
GTGTCTAATGGTCTATAATT+CGG - chr8_1:61900215-61900234 Msa1205560:five_prime_UTR 30.0%
AATGGTCTATAATTCGGATT+TGG - chr8_1:61900221-61900240 Msa1205560:five_prime_UTR 30.0%
!!! ATGAATTGGTGTTTTAGTGG+TGG - chr8_1:61898755-61898774 Msa1205560:three_prime_UTR 35.0%
ATTCTCTATCATTCCAATGG+AGG - chr8_1:61898846-61898865 Msa1205560:three_prime_UTR 35.0%
!! GCCCTTTAAAATCACAACAT+TGG + chr8_1:61899442-61899461 None:intergenic 35.0%
AAAGGGCCATGTGTAATAAT+AGG - chr8_1:61899455-61899474 Msa1205560:CDS 35.0%
!! ACAGACAACTCTTTCAAGTT+TGG - chr8_1:61899482-61899501 Msa1205560:CDS 35.0%
CCAACCTTAGGCAAAATTAT+TGG + chr8_1:61899599-61899618 None:intergenic 35.0%
! CCAATAATTTTGCCTAAGGT+TGG - chr8_1:61899596-61899615 Msa1205560:CDS 35.0%
! ATAATTTTGCCTAAGGTTGG+TGG - chr8_1:61899599-61899618 Msa1205560:CDS 35.0%
!!! CTATTTTTGGTGATGAGTCT+AGG - chr8_1:61899816-61899835 Msa1205560:intron 35.0%
TAGAACTTCATTATGGGGTA+AGG - chr8_1:61899893-61899912 Msa1205560:intron 35.0%
!!! TTGTCACCGATTTAGACTTT+TGG - chr8_1:61899967-61899986 Msa1205560:intron 35.0%
ATGTGATTGTACACATCGTA+AGG - chr8_1:61900062-61900081 Msa1205560:CDS 35.0%
CACACATTTACATACCTTGA+AGG + chr8_1:61900198-61900217 None:intergenic 35.0%
!!! ATGAATTGGTGTTTTAGTGG+TGG - chr8_1:61898755-61898774 Msa1205560:three_prime_UTR 35.0%
ATTCTCTATCATTCCAATGG+AGG - chr8_1:61898846-61898865 Msa1205560:three_prime_UTR 35.0%
!! GCCCTTTAAAATCACAACAT+TGG + chr8_1:61899442-61899461 None:intergenic 35.0%
AAAGGGCCATGTGTAATAAT+AGG - chr8_1:61899455-61899474 Msa1205560:CDS 35.0%
!! ACAGACAACTCTTTCAAGTT+TGG - chr8_1:61899482-61899501 Msa1205560:CDS 35.0%
CCAACCTTAGGCAAAATTAT+TGG + chr8_1:61899599-61899618 None:intergenic 35.0%
! CCAATAATTTTGCCTAAGGT+TGG - chr8_1:61899596-61899615 Msa1205560:CDS 35.0%
! ATAATTTTGCCTAAGGTTGG+TGG - chr8_1:61899599-61899618 Msa1205560:CDS 35.0%
!!! CTATTTTTGGTGATGAGTCT+AGG - chr8_1:61899816-61899835 Msa1205560:intron 35.0%
TAGAACTTCATTATGGGGTA+AGG - chr8_1:61899893-61899912 Msa1205560:intron 35.0%
!!! TTGTCACCGATTTAGACTTT+TGG - chr8_1:61899967-61899986 Msa1205560:intron 35.0%
ATGTGATTGTACACATCGTA+AGG - chr8_1:61900062-61900081 Msa1205560:CDS 35.0%
CACACATTTACATACCTTGA+AGG + chr8_1:61900198-61900217 None:intergenic 35.0%
! AGTGGTGGAAATGCATTACA+TGG - chr8_1:61898770-61898789 Msa1205560:three_prime_UTR 40.0%
!! ATGGACTTGTTTTCCTCCAT+TGG + chr8_1:61898862-61898881 None:intergenic 40.0%
! TTTGGTGCATTTAACCCTGA+AGG - chr8_1:61899500-61899519 Msa1205560:CDS 40.0%
CTGTGCTTCTATATCCTTCA+GGG + chr8_1:61899517-61899536 None:intergenic 40.0%
TCTGTGCTTCTATATCCTTC+AGG + chr8_1:61899518-61899537 None:intergenic 40.0%
TGTTTGATTATGCTCGTGGT+GGG - chr8_1:61899636-61899655 Msa1205560:intron 40.0%
CCAACACCAGAATTAGTATC+AGG + chr8_1:61899731-61899750 None:intergenic 40.0%
CCTGATACTAATTCTGGTGT+TGG - chr8_1:61899728-61899747 Msa1205560:intron 40.0%
AGACAAGCCAAGTCTAGATT+GGG - chr8_1:61899758-61899777 Msa1205560:intron 40.0%
AGACAATCCCAATCTAGACT+TGG + chr8_1:61899768-61899787 None:intergenic 40.0%
TGGGATTGTCTTATGCCAAA+AGG - chr8_1:61899777-61899796 Msa1205560:intron 40.0%
GGGATTGTCTTATGCCAAAA+GGG - chr8_1:61899778-61899797 Msa1205560:intron 40.0%
TCTTATGCCAAAAGGGAAGA+TGG - chr8_1:61899785-61899804 Msa1205560:intron 40.0%
! GATGGCAAGGAGTCTATTTT+TGG - chr8_1:61899803-61899822 Msa1205560:intron 40.0%
! AGTGGTGGAAATGCATTACA+TGG - chr8_1:61898770-61898789 Msa1205560:three_prime_UTR 40.0%
!! ATGGACTTGTTTTCCTCCAT+TGG + chr8_1:61898862-61898881 None:intergenic 40.0%
! TTTGGTGCATTTAACCCTGA+AGG - chr8_1:61899500-61899519 Msa1205560:CDS 40.0%
CTGTGCTTCTATATCCTTCA+GGG + chr8_1:61899517-61899536 None:intergenic 40.0%
TCTGTGCTTCTATATCCTTC+AGG + chr8_1:61899518-61899537 None:intergenic 40.0%
TGTTTGATTATGCTCGTGGT+GGG - chr8_1:61899636-61899655 Msa1205560:intron 40.0%
CCAACACCAGAATTAGTATC+AGG + chr8_1:61899731-61899750 None:intergenic 40.0%
CCTGATACTAATTCTGGTGT+TGG - chr8_1:61899728-61899747 Msa1205560:intron 40.0%
AGACAAGCCAAGTCTAGATT+GGG - chr8_1:61899758-61899777 Msa1205560:intron 40.0%
AGACAATCCCAATCTAGACT+TGG + chr8_1:61899768-61899787 None:intergenic 40.0%
TGGGATTGTCTTATGCCAAA+AGG - chr8_1:61899777-61899796 Msa1205560:intron 40.0%
GGGATTGTCTTATGCCAAAA+GGG - chr8_1:61899778-61899797 Msa1205560:intron 40.0%
TCTTATGCCAAAAGGGAAGA+TGG - chr8_1:61899785-61899804 Msa1205560:intron 40.0%
! GATGGCAAGGAGTCTATTTT+TGG - chr8_1:61899803-61899822 Msa1205560:intron 40.0%
!!! TAGTTTTGGTCATCTGCGGA+TGG - chr8_1:61898808-61898827 Msa1205560:three_prime_UTR 45.0%
AGGAACTGAAATGCTGCTAC+AGG - chr8_1:61899381-61899400 Msa1205560:CDS 45.0%
GGAACTGAAATGCTGCTACA+GGG - chr8_1:61899382-61899401 Msa1205560:CDS 45.0%
TGCTACAGGGCAACAATTGA+TGG - chr8_1:61899395-61899414 Msa1205560:CDS 45.0%
GCTCTGTTTGATTATGCTCG+TGG - chr8_1:61899632-61899651 Msa1205560:CDS 45.0%
CTGTTTGATTATGCTCGTGG+TGG - chr8_1:61899635-61899654 Msa1205560:intron 45.0%
AGCAAAACCACCCATAACTG+GGG + chr8_1:61899705-61899724 None:intergenic 45.0%
CAGCAAAACCACCCATAACT+GGG + chr8_1:61899706-61899725 None:intergenic 45.0%
!! CAGTTATGGGTGGTTTTGCT+GGG - chr8_1:61899705-61899724 Msa1205560:intron 45.0%
GAGACAAGCCAAGTCTAGAT+TGG - chr8_1:61899757-61899776 Msa1205560:intron 45.0%
!!! TAGTTTTGGTCATCTGCGGA+TGG - chr8_1:61898808-61898827 Msa1205560:three_prime_UTR 45.0%
AGGAACTGAAATGCTGCTAC+AGG - chr8_1:61899381-61899400 Msa1205560:CDS 45.0%
GGAACTGAAATGCTGCTACA+GGG - chr8_1:61899382-61899401 Msa1205560:CDS 45.0%
TGCTACAGGGCAACAATTGA+TGG - chr8_1:61899395-61899414 Msa1205560:CDS 45.0%
GCTCTGTTTGATTATGCTCG+TGG - chr8_1:61899632-61899651 Msa1205560:CDS 45.0%
CTGTTTGATTATGCTCGTGG+TGG - chr8_1:61899635-61899654 Msa1205560:intron 45.0%
AGCAAAACCACCCATAACTG+GGG + chr8_1:61899705-61899724 None:intergenic 45.0%
CAGCAAAACCACCCATAACT+GGG + chr8_1:61899706-61899725 None:intergenic 45.0%
!! CAGTTATGGGTGGTTTTGCT+GGG - chr8_1:61899705-61899724 Msa1205560:intron 45.0%
GAGACAAGCCAAGTCTAGAT+TGG - chr8_1:61899757-61899776 Msa1205560:intron 45.0%
ACCCATAACTGGGGCTAATG+GGG + chr8_1:61899696-61899715 None:intergenic 50.0%
CACCCATAACTGGGGCTAAT+GGG + chr8_1:61899697-61899716 None:intergenic 50.0%
CCAGCAAAACCACCCATAAC+TGG + chr8_1:61899707-61899726 None:intergenic 50.0%
!! CCAGTTATGGGTGGTTTTGC+TGG - chr8_1:61899704-61899723 Msa1205560:intron 50.0%
GCTGGGCCTGATACTAATTC+TGG - chr8_1:61899722-61899741 Msa1205560:intron 50.0%
TGCCAAAAGGGAAGATGGCA+AGG - chr8_1:61899790-61899809 Msa1205560:intron 50.0%
! CTCCTTGCCATCTTCCCTTT+TGG + chr8_1:61899795-61899814 None:intergenic 50.0%
ACCCATAACTGGGGCTAATG+GGG + chr8_1:61899696-61899715 None:intergenic 50.0%
CACCCATAACTGGGGCTAAT+GGG + chr8_1:61899697-61899716 None:intergenic 50.0%
CCAGCAAAACCACCCATAAC+TGG + chr8_1:61899707-61899726 None:intergenic 50.0%
!! CCAGTTATGGGTGGTTTTGC+TGG - chr8_1:61899704-61899723 Msa1205560:intron 50.0%
GCTGGGCCTGATACTAATTC+TGG - chr8_1:61899722-61899741 Msa1205560:intron 50.0%
TGCCAAAAGGGAAGATGGCA+AGG - chr8_1:61899790-61899809 Msa1205560:intron 50.0%
! CTCCTTGCCATCTTCCCTTT+TGG + chr8_1:61899795-61899814 None:intergenic 50.0%
!! TTGCCTAAGGTTGGTGGCAG+TGG - chr8_1:61899605-61899624 Msa1205560:CDS 55.0%
CCCATAACTGGGGCTAATGG+GGG + chr8_1:61899695-61899714 None:intergenic 55.0%
CCCCCATTAGCCCCAGTTAT+GGG - chr8_1:61899692-61899711 Msa1205560:intron 55.0%
CCACCCATAACTGGGGCTAA+TGG + chr8_1:61899698-61899717 None:intergenic 55.0%
CCATTAGCCCCAGTTATGGG+TGG - chr8_1:61899695-61899714 Msa1205560:intron 55.0%
!! TTGCCTAAGGTTGGTGGCAG+TGG - chr8_1:61899605-61899624 Msa1205560:CDS 55.0%
CCCATAACTGGGGCTAATGG+GGG + chr8_1:61899695-61899714 None:intergenic 55.0%
CCCCCATTAGCCCCAGTTAT+GGG - chr8_1:61899692-61899711 Msa1205560:intron 55.0%
CCACCCATAACTGGGGCTAA+TGG + chr8_1:61899698-61899717 None:intergenic 55.0%
CCATTAGCCCCAGTTATGGG+TGG - chr8_1:61899695-61899714 Msa1205560:intron 55.0%
GCACCACTGCCACCAACCTT+AGG + chr8_1:61899611-61899630 None:intergenic 60.0%
AGCCCATCAGCCCCGAATTG+CGG + chr8_1:61899662-61899681 None:intergenic 60.0%
!! GGGGCTGATGGGCTTCTCAT+CGG - chr8_1:61899668-61899687 Msa1205560:intron 60.0%
!! GGGCTGATGGGCTTCTCATC+GGG - chr8_1:61899669-61899688 Msa1205560:intron 60.0%
GCCCCCATTAGCCCCAGTTA+TGG - chr8_1:61899691-61899710 Msa1205560:intron 60.0%
GCACCACTGCCACCAACCTT+AGG + chr8_1:61899611-61899630 None:intergenic 60.0%
AGCCCATCAGCCCCGAATTG+CGG + chr8_1:61899662-61899681 None:intergenic 60.0%
!! GGGGCTGATGGGCTTCTCAT+CGG - chr8_1:61899668-61899687 Msa1205560:intron 60.0%
!! GGGCTGATGGGCTTCTCATC+GGG - chr8_1:61899669-61899688 Msa1205560:intron 60.0%
GCCCCCATTAGCCCCAGTTA+TGG - chr8_1:61899691-61899710 Msa1205560:intron 60.0%
!! GCTCGTGGTGGGCCGCAATT+CGG - chr8_1:61899647-61899666 Msa1205560:intron 65.0%
!! CTCGTGGTGGGCCGCAATTC+GGG - chr8_1:61899648-61899667 Msa1205560:intron 65.0%
!! TCGTGGTGGGCCGCAATTCG+GGG - chr8_1:61899649-61899668 Msa1205560:intron 65.0%
GGCCGCAATTCGGGGCTGAT+GGG - chr8_1:61899657-61899676 Msa1205560:intron 65.0%
!! GCTCGTGGTGGGCCGCAATT+CGG - chr8_1:61899647-61899666 Msa1205560:intron 65.0%
!! CTCGTGGTGGGCCGCAATTC+GGG - chr8_1:61899648-61899667 Msa1205560:intron 65.0%
!! TCGTGGTGGGCCGCAATTCG+GGG - chr8_1:61899649-61899668 Msa1205560:intron 65.0%
GGCCGCAATTCGGGGCTGAT+GGG - chr8_1:61899657-61899676 Msa1205560:intron 65.0%
GGGCCGCAATTCGGGGCTGA+TGG - chr8_1:61899656-61899675 Msa1205560:intron 70.0%
GGGCCGCAATTCGGGGCTGA+TGG - chr8_1:61899656-61899675 Msa1205560:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61898719 61900312 61898719 ID=Msa1205560;Name=Msa1205560
chr8_1 mRNA 61898719 61900312 61898719 ID=Msa1205560-mRNA-1;Parent=Msa1205560;Name=Msa1205560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|2|417|229
chr8_1 exon 61898719 61899653 61898719 ID=Msa1205560-mRNA-1:exon:20090;Parent=Msa1205560-mRNA-1
chr8_1 exon 61900033 61900312 61900033 ID=Msa1205560-mRNA-1:exon:20089;Parent=Msa1205560-mRNA-1
chr8_1 five_prime_UTR 61900205 61900312 61900205 ID=Msa1205560-mRNA-1:five_prime_utr;Parent=Msa1205560-mRNA-1
chr8_1 CDS 61900033 61900204 61900033 ID=Msa1205560-mRNA-1:cds;Parent=Msa1205560-mRNA-1
chr8_1 CDS 61899136 61899653 61899136 ID=Msa1205560-mRNA-1:cds;Parent=Msa1205560-mRNA-1
chr8_1 three_prime_UTR 61898719 61899135 61898719 ID=Msa1205560-mRNA-1:three_prime_utr;Parent=Msa1205560-mRNA-1
Gene Sequence

>Msa1205560

ATGGCATCTTGTATCTCAAATTCTCTATCATTCCAATGGAGGAAAACAAGTCCATATTGTTTATTTGGTTGGAACATAGGCAGAAAGAGAGTTGATGACAAACCTCAGATTAAATATCATGATATTGATCTCACTTTCTCAACTTCTCTAGTTAACAAAACATTTTTGAAAGGTAAGGAACTGAAATGCTGCTACAGGGCAACAATTGATGGATTTAGTGCAACAAATTTCCACCAATGTTGTGATTTTAAAGGGCCATGTGTAATAATAGGTTACACAGACAACTCTTTCAAGTTTGGTGCATTTAACCCTGAAGGATATAGAAGCACAGATGATTACTATGAAACATTTGATGCATTTCTATTTTATTGGGTAGAAAATAAAAATGAACCAATAATTTTGCCTAAGGTTGGTGGCAGTGGTGCAGCTCTGTTTGATTATGCTCGTGGTGGGCCGCAATTCGGGGCTGATGGGCTTCTCATCGGGCCCCCATTAGCCCCAGTTATGGGTGGTTTTGCTGGGCCTGATACTAATTCTGGTGTTGGTGACTTGAGACAAGCCAAGTCTAGATTGGGATTGTCTTATGCCAAAAGGGAAGATGGCAAGGAGTCTATTTTTGGTGATGAGTCTAGGGCAACTATTCAAGAAGTAGAAGTGTTTTGTAGCCCCAAAATTGCAAGTTTATACTAG

Protein sequence

>Msa1205560

MASCISNSLSFQWRKTSPYCLFGWNIGRKRVDDKPQIKYHDIDLTFSTSLVNKTFLKGKELKCCYRATIDGFSATNFHQCCDFKGPCVIIGYTDNSFKFGAFNPEGYRSTDDYYETFDAFLFYWVENKNEPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQAKSRLGLSYAKREDGKESIFGDESRATIQEVEVFCSPKIASLY*