AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787380 MtrunA17_Chr5g0410791 97.746 355 8 0 1 355 1 355 0.0 679
Msa0787380 MtrunA17_Chr2g0289301 46.212 264 130 3 92 354 63 315 3.01e-68 217
Msa0787380 MtrunA17_Chr2g0289291 42.857 273 140 3 83 354 57 314 6.10e-61 198
Msa0787380 MtrunA17_Chr1g0202631 39.189 148 65 3 91 237 18 141 4.92e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787380 AT2G35490.1 62.102 314 91 6 52 355 80 375 3.52e-120 352
Msa0787380 AT4G04020.1 46.792 265 133 3 92 355 60 317 7.29e-79 244
Msa0787380 AT4G22240.1 48.207 251 126 3 107 355 61 309 1.11e-78 244

Find 146 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATATACCTTTCACATTT+TGG 0.069136 5_2:-73092294 None:intergenic
TTTCTTTGATATTCCAAATT+TGG 0.101548 5_2:+73088136 Msa0787380:five_prime_UTR
CTGAGCTTCTTAATGGAAAT+TGG 0.105755 5_2:+73088764 Msa0787380:CDS
GCTCTTGTTGATACGGTTTA+TGG 0.164801 5_2:+73088637 Msa0787380:CDS
TCAAGCTGTTGTGTATTTAA+AGG 0.171848 5_2:+73092339 Msa0787380:three_prime_UTR
TCTTTATCCTCCAAGGTTTC+AGG 0.177149 5_2:+73088463 Msa0787380:CDS
TTATTTCACCTAAGCTAATA+AGG 0.205848 5_2:-73092460 None:intergenic
GAAAGTGAATCACCCAAATT+TGG 0.218196 5_2:-73088149 None:intergenic
AATAATAATATATATTGATT+TGG 0.232043 5_2:+73092478 Msa0787380:three_prime_UTR
GAGGCCCCAGGCTAAGATTT+TGG 0.241414 5_2:-73091973 None:intergenic
AAGAGAGAGAAGAAGGTTTA+GGG 0.248806 5_2:-73088282 None:intergenic
AGAAATAAAATGTGTATTAA+AGG 0.251934 5_2:-73088180 None:intergenic
GAAGAGAGAGAAGAAGGTTT+AGG 0.252960 5_2:-73088283 None:intergenic
GAGGAACCTGAGCTTCTTAA+TGG 0.275246 5_2:+73088757 Msa0787380:CDS
AGTATATCACGTGTCATTTC+AGG 0.278085 5_2:+73092034 Msa0787380:CDS
TTTATATATAACAGAATTAC+AGG 0.284747 5_2:-73092414 None:intergenic
TTCTTTGATATTCCAAATTT+GGG 0.285394 5_2:+73088137 Msa0787380:five_prime_UTR
ATAATAATATATATTGATTT+GGG 0.311097 5_2:+73092479 Msa0787380:three_prime_UTR
GATAAAGATGGTTTGGCTTC+GGG 0.315337 5_2:-73088448 None:intergenic
ACTGAGCTTGGGTTTCGAGC+TGG 0.339922 5_2:+73088661 Msa0787380:CDS
CTGAGCTTGGGTTTCGAGCT+GGG 0.348135 5_2:+73088662 Msa0787380:CDS
CTCTTGTTGATACGGTTTAT+GGG 0.348147 5_2:+73088638 Msa0787380:CDS
TTTGGGTGGGCAGAGGGAAA+TGG 0.360329 5_2:-73092276 None:intergenic
GAGAATACCTGTATTCTTGC+AGG 0.368434 5_2:-73089868 None:intergenic
TATTTCACCTAAGCTAATAA+GGG 0.369113 5_2:-73092459 None:intergenic
TTTGGCTTCGGGTACGGGTT+CGG 0.370928 5_2:-73088437 None:intergenic
TTGGGTGGGCAGAGGGAAAT+GGG 0.375489 5_2:-73092275 None:intergenic
GGATAAAGATGGTTTGGCTT+CGG 0.381703 5_2:-73088449 None:intergenic
CTTGGAGGATAAAGATGGTT+TGG 0.383173 5_2:-73088455 None:intergenic
AGCTATAGCGATGCTGGAAA+TGG 0.384313 5_2:+73088544 Msa0787380:CDS
GCAACAATCGCTCGGTCCTC+TGG 0.387544 5_2:+73091997 Msa0787380:CDS
ATCCTCCAAGGTTTCAGGTT+CGG 0.389859 5_2:+73088468 Msa0787380:CDS
TCCTTCCTCCACCGGAGCTT+CGG 0.393349 5_2:-73088584 None:intergenic
CGGTTTATGGGACTGAGCTT+GGG 0.396439 5_2:+73088650 Msa0787380:CDS
ACCCCATTCATCGGAGATAT+CGG 0.397999 5_2:-73088407 None:intergenic
CACCGATATCTCCGATGAAT+GGG 0.399176 5_2:+73088405 Msa0787380:CDS
ACGGTTTATGGGACTGAGCT+TGG 0.399549 5_2:+73088649 Msa0787380:CDS
GAGTCCCCTTCTTGATTAGT+AGG 0.407924 5_2:+73092183 Msa0787380:exon
GATGGTTTGGCTTCGGGTAC+GGG 0.411549 5_2:-73088442 None:intergenic
TTCGAAGAACGAGGATGAAT+GGG 0.414775 5_2:+73088495 Msa0787380:CDS
GGAGGGAATGATGAGCTTGA+GGG 0.424981 5_2:+73088604 Msa0787380:CDS
TGGGTGGGCAGAGGGAAATG+GGG 0.428409 5_2:-73092274 None:intergenic
GCTTGTCCTCTCACCAGGTA+TGG 0.429636 5_2:-73092077 None:intergenic
CCCTACTCCGGCTCCGGTTG+AGG 0.430919 5_2:+73088738 Msa0787380:CDS
CCACCGATATCTCCGATGAA+TGG 0.434882 5_2:+73088404 Msa0787380:CDS
TGAGCTTCTTAATGGAAATT+GGG 0.435506 5_2:+73088765 Msa0787380:CDS
AGAAGCTCAGGTTCCTCAAC+CGG 0.436474 5_2:-73088751 None:intergenic
CTTCGAAGAACGAGGATGAA+TGG 0.442545 5_2:+73088494 Msa0787380:CDS
AGCTGAAGTGTCGGAGTTCG+TGG 0.443749 5_2:+73088696 Msa0787380:CDS
CTGAAAGATGATGAGGCAAA+AGG 0.448168 5_2:-73089817 None:intergenic
GGAAGAGAAGAGAGAGAAGA+AGG 0.449171 5_2:-73088289 None:intergenic
CAATTTCCATTAAGAAGCTC+AGG 0.449649 5_2:-73088763 None:intergenic
AGATGGTTTGGCTTCGGGTA+CGG 0.450269 5_2:-73088443 None:intergenic
TCGAAGCCCTGCAAGAATAC+AGG 0.454672 5_2:+73089861 Msa0787380:CDS
GTTCACAACAGTGGAGCTAT+AGG 0.458564 5_2:-73089776 None:intergenic
CTCCGCTTCATCTCCGCCAC+CGG 0.463429 5_2:+73088355 Msa0787380:CDS
AGCAGCAGGAGCATTACCTT+TGG 0.464327 5_2:+73089720 Msa0787380:CDS
TGCTAACCCTACTCCGGCTC+CGG 0.466564 5_2:+73088732 Msa0787380:CDS
GAAACGTGCTCTTGTTGATA+CGG 0.468444 5_2:+73088630 Msa0787380:CDS
AGGAACCGAACCTGAAACCT+TGG 0.476928 5_2:-73088473 None:intergenic
CTGTTTGTCCTTGCAAGAGA+AGG 0.478451 5_2:+73092160 Msa0787380:CDS
TCAGGTTCCTCAACCGGAGC+CGG 0.479277 5_2:-73088745 None:intergenic
GCCGGGAGCTATAGCGATGC+TGG 0.479717 5_2:+73088538 Msa0787380:CDS
GTCTCCGATGTCACCGGTGG+CGG 0.480527 5_2:-73088368 None:intergenic
GGCTTCTGCTACCGAAGCTC+CGG 0.480527 5_2:+73088573 Msa0787380:CDS
ACAAGGACTTGCGAATATCA+AGG 0.487719 5_2:+73092125 Msa0787380:CDS
GTCGGAGTTCGTGGCTCAGT+TGG 0.506627 5_2:+73088705 Msa0787380:CDS
TCATTCCCTCCTTCCTCCAC+CGG 0.509274 5_2:-73088592 None:intergenic
GGAGCTTCGGTAGCAGAAGC+CGG 0.511929 5_2:-73088571 None:intergenic
CATTCATCCTCGTTCTTCGA+AGG 0.514164 5_2:-73088493 None:intergenic
GCGGAGATGAAGCGGAGAGA+AGG 0.516052 5_2:-73088349 None:intergenic
AGGAGGGAATGATGAGCTTG+AGG 0.516146 5_2:+73088603 Msa0787380:CDS
AGCATTACCTTTGGTGAAGG+TGG 0.517212 5_2:+73089729 Msa0787380:CDS
CCAGGTATGGGAATCTTAAG+AGG 0.518200 5_2:-73092064 None:intergenic
CAAGAGCTTGTCCTCTCACC+AGG 0.518418 5_2:-73092082 None:intergenic
CTGTTGCCTCTTCTAGCAGC+AGG 0.518463 5_2:+73089706 Msa0787380:CDS
GCGATTGTTGCAGAGGCCCC+AGG 0.518853 5_2:-73091985 None:intergenic
TGAAAGATGATGAGGCAAAA+GGG 0.519153 5_2:-73089816 None:intergenic
GCTTGGGTTTCGAGCTGGGT+CGG 0.519957 5_2:+73088666 Msa0787380:CDS
ATGTGTATTAAAGGAACTTG+TGG 0.520168 5_2:-73088171 None:intergenic
TTTGGCCAAAATCTTAGCCT+GGG 0.525313 5_2:+73091968 Msa0787380:CDS
CAAACCATCTTTATCCTCCA+AGG 0.525376 5_2:+73088456 Msa0787380:CDS
TACTTCCTACTAATCAAGAA+GGG 0.525799 5_2:-73092188 None:intergenic
CTTGTCCTCTCACCAGGTAT+GGG 0.526234 5_2:-73092076 None:intergenic
TGCTACCGAAGCTCCGGTGG+AGG 0.528076 5_2:+73088579 Msa0787380:CDS
GAAACCTTGGAGGATAAAGA+TGG 0.529624 5_2:-73088460 None:intergenic
GGGCCTCTGCAACAATCGCT+CGG 0.530332 5_2:+73091989 Msa0787380:CDS
CTGGTGAGAGGACAAGCTCT+TGG 0.530530 5_2:+73092083 Msa0787380:CDS
GTGGGCAGAGGGAAATGGGG+TGG 0.530810 5_2:-73092271 None:intergenic
GGATTTCTCACCCCATTCAT+CGG 0.532988 5_2:-73088416 None:intergenic
CAAGTCCTTGTCAAGATATG+TGG 0.538461 5_2:-73092113 None:intergenic
CCTCAACCGGAGCCGGAGTA+GGG 0.538823 5_2:-73088738 None:intergenic
TGAAGCGGAGAGAAGGGAAT+CGG 0.540766 5_2:-73088342 None:intergenic
TTACTTCCTACTAATCAAGA+AGG 0.544198 5_2:-73092189 None:intergenic
ACCGAAGCTCCGGTGGAGGA+AGG 0.544424 5_2:+73088583 Msa0787380:CDS
AATCAGGTTACATTCAAAGA+AGG 0.544455 5_2:+73091887 Msa0787380:intron
CACCGGTGGCGGAGATGAAG+CGG 0.546076 5_2:-73088357 None:intergenic
CGGAGATGAAGCGGAGAGAA+GGG 0.547347 5_2:-73088348 None:intergenic
GCTCGGTCCTCTGGAGAATG+TGG 0.547815 5_2:+73092006 Msa0787380:CDS
TCCTCAACCGGAGCCGGAGT+AGG 0.547918 5_2:-73088739 None:intergenic
TGTTTGTCCTTGCAAGAGAA+GGG 0.549187 5_2:+73092161 Msa0787380:CDS
CAAGGACTTGCGAATATCAA+GGG 0.550792 5_2:+73092126 Msa0787380:CDS
ATCTCCGCCACCGGTGACAT+CGG 0.551340 5_2:+73088364 Msa0787380:CDS
CCTCTTAAGATTCCCATACC+TGG 0.555697 5_2:+73092064 Msa0787380:CDS
TCCAGCATCGCTATAGCTCC+CGG 0.556872 5_2:-73088539 None:intergenic
GAGGGAATGATGAGCTTGAG+GGG 0.557038 5_2:+73088605 Msa0787380:CDS
AGAATACCTGTATTCTTGCA+GGG 0.561505 5_2:-73089867 None:intergenic
AACGAGGATGAATGGGGAGA+AGG 0.562177 5_2:+73088502 Msa0787380:CDS
AACCGAACCTGAAACCTTGG+AGG 0.564163 5_2:-73088470 None:intergenic
GAATTACAGGTTTACAACAC+AGG 0.567869 5_2:-73092401 None:intergenic
TTCTGCTACCGAAGCTCCGG+TGG 0.570205 5_2:+73088576 Msa0787380:CDS
GGACCGAGCGATTGTTGCAG+AGG 0.571614 5_2:-73091992 None:intergenic
AGAGAAGAGACATGGCGAAA+CGG 0.572628 5_2:-73088222 None:intergenic
GATGAGAGGAACACGTAGTG+TGG 0.575131 5_2:-73088248 None:intergenic
AGGAGCATTACCTTTGGTGA+AGG 0.578672 5_2:+73089726 Msa0787380:CDS
GAATATCAAGGGGAGATGGC+GGG 0.578933 5_2:+73092137 Msa0787380:CDS
ATTTCACCTAAGCTAATAAG+GGG 0.579026 5_2:-73092458 None:intergenic
CGATGCTGGAAATGGAACTC+CGG 0.580650 5_2:+73088552 Msa0787380:CDS
GAAGCTCCGGTGGAGGAAGG+AGG 0.581497 5_2:+73088586 Msa0787380:CDS
GGGGACTCCCTTCTCTTGCA+AGG 0.586669 5_2:-73092168 None:intergenic
ATCAGCGTCTCCGATGTCAC+CGG 0.588044 5_2:-73088374 None:intergenic
TTGCGAATATCAAGGGGAGA+TGG 0.589364 5_2:+73092133 Msa0787380:CDS
GAAGGGAATCGGTGAGAGCG+AGG 0.590945 5_2:-73088331 None:intergenic
CTGCCCACCCAAAATGTGAA+AGG 0.591170 5_2:+73092286 Msa0787380:three_prime_UTR
CGAATATCAAGGGGAGATGG+CGG 0.593044 5_2:+73092136 Msa0787380:CDS
AAGCTCCGGTGGAGGAAGGA+GGG 0.601932 5_2:+73088587 Msa0787380:CDS
AGGGCTTCGAACTTCAAATG+AGG 0.604253 5_2:-73089848 None:intergenic
TTGGCCAAAATCTTAGCCTG+GGG 0.612553 5_2:+73091969 Msa0787380:CDS
AATGCTCCTGCTGCTAGAAG+AGG 0.620670 5_2:-73089712 None:intergenic
TTCGGTTCCTTCGAAGAACG+AGG 0.624221 5_2:+73088486 Msa0787380:CDS
AGCGTCTCCGATGTCACCGG+TGG 0.626522 5_2:-73088371 None:intergenic
TCATCGGAGATATCGGTGGA+TGG 0.639488 5_2:-73088400 None:intergenic
ACTTCCTACTAATCAAGAAG+GGG 0.640290 5_2:-73092187 None:intergenic
AGATGCACTGAAAGATGATG+AGG 0.643499 5_2:-73089824 None:intergenic
GGAAGTTCGAGCTGAAGTGT+CGG 0.650311 5_2:+73088687 Msa0787380:CDS
AGATTCCCATACCTGGTGAG+AGG 0.651644 5_2:+73092071 Msa0787380:CDS
TCTTACCACATATCTTGACA+AGG 0.653066 5_2:+73092108 Msa0787380:CDS
CCATTCATCGGAGATATCGG+TGG 0.655548 5_2:-73088404 None:intergenic
GGAAGCTGCTAACCCTACTC+CGG 0.655632 5_2:+73088726 Msa0787380:CDS
TGTGGAAGAGAGAAGAGACA+TGG 0.661649 5_2:-73088230 None:intergenic
TCGAAGAACGAGGATGAATG+GGG 0.664578 5_2:+73088496 Msa0787380:CDS
ACCGATATCTCCGATGAATG+GGG 0.667674 5_2:+73088406 Msa0787380:CDS
AAGGACTTGCGAATATCAAG+GGG 0.684902 5_2:+73092127 Msa0787380:CDS
TGTCACAGAGTTCACAACAG+TGG 0.699209 5_2:-73089785 None:intergenic
TTTCACCTAAGCTAATAAGG+GGG 0.706298 5_2:-73092457 None:intergenic
CTTGCAACCACATTCTCCAG+AGG 0.715896 5_2:-73092013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAAATTTTAATCATA+GGG + chr5_2:73088949-73088968 Msa0787380:intron 10.0%
!!! TATCTTTTCTTTTTTATATT+CGG + chr5_2:73092248-73092267 Msa0787380:three_prime_UTR 10.0%
!! AGAAATAAAATGTGTATTAA+AGG - chr5_2:73088183-73088202 None:intergenic 15.0%
!!! CTTTTACAAATTTTAATCAT+AGG + chr5_2:73088948-73088967 Msa0787380:intron 15.0%
!!! ATTAATGATCTTTTTAATGT+TGG + chr5_2:73089211-73089230 Msa0787380:intron 15.0%
!!! TTAATGATCTTTTTAATGTT+GGG + chr5_2:73089212-73089231 Msa0787380:intron 15.0%
!! TAAACTATTTATATTGCAAA+AGG + chr5_2:73089320-73089339 Msa0787380:intron 15.0%
!! TTCATTACTAAATTGAAAAA+AGG + chr5_2:73089907-73089926 Msa0787380:intron 15.0%
!!! ATTATTTTCTTAGATATGAT+AGG - chr5_2:73090276-73090295 None:intergenic 15.0%
!! CAAAACTGTAATATTATTTA+TGG + chr5_2:73090497-73090516 Msa0787380:intron 15.0%
!! TGTAATATTATTTATGGAAA+AGG + chr5_2:73090503-73090522 Msa0787380:intron 15.0%
!!! TAAATTAAGTTGATTTTTCA+CGG - chr5_2:73091442-73091461 None:intergenic 15.0%
!! AATGATTAACTTATAACAAA+GGG - chr5_2:73091796-73091815 None:intergenic 15.0%
!! TAATGATTAACTTATAACAA+AGG - chr5_2:73091797-73091816 None:intergenic 15.0%
!! TTTATATATAACAGAATTAC+AGG - chr5_2:73092417-73092436 None:intergenic 15.0%
!! TTTCTTTGATATTCCAAATT+TGG + chr5_2:73088136-73088155 Msa0787380:five_prime_UTR 20.0%
!! TTCTTTGATATTCCAAATTT+GGG + chr5_2:73088137-73088156 Msa0787380:five_prime_UTR 20.0%
!! TAAATTGAAAAAAGGCAAAA+AGG + chr5_2:73089915-73089934 Msa0787380:intron 20.0%
!!! GTTTTGTTATCTTGATTTTA+CGG - chr5_2:73090483-73090502 None:intergenic 20.0%
!!! TGGAATAGAGATTTTATTAA+CGG - chr5_2:73091126-73091145 None:intergenic 20.0%
!!! TTCTCCTTTTTATTTCTTTT+GGG - chr5_2:73091398-73091417 None:intergenic 20.0%
!! ATACTAAGAAAAACATTTGT+CGG - chr5_2:73091527-73091546 None:intergenic 20.0%
! ATAAGATGTTAACACAAACA+GGG - chr5_2:73089255-73089274 None:intergenic 25.0%
! AATAAGATGTTAACACAAAC+AGG - chr5_2:73089256-73089275 None:intergenic 25.0%
!! CAACTTATTGACAATGTTTT+AGG + chr5_2:73089427-73089446 Msa0787380:intron 25.0%
!! ATGTTTTCAATGCAAAGTAA+AGG - chr5_2:73089543-73089562 None:intergenic 25.0%
!! ATTTTGTATCTTAGAAACGA+AGG + chr5_2:73089568-73089587 Msa0787380:intron 25.0%
! AATTTAGTAATGAAATGCGA+AGG - chr5_2:73089901-73089920 None:intergenic 25.0%
! GATACTTATCTAATGAGAAA+AGG - chr5_2:73090035-73090054 None:intergenic 25.0%
! TAGTAAGTTACTGTGAAATA+TGG + chr5_2:73090109-73090128 Msa0787380:intron 25.0%
! TTAAAAAAACCTAGATGAGA+TGG + chr5_2:73090221-73090240 Msa0787380:intron 25.0%
! TAAAAAAACCTAGATGAGAT+GGG + chr5_2:73090222-73090241 Msa0787380:intron 25.0%
! TTAGATATGATAGGACATTA+AGG - chr5_2:73090267-73090286 None:intergenic 25.0%
! GTCTGAGTAGTTAATTTAAA+TGG - chr5_2:73090320-73090339 None:intergenic 25.0%
! ACATTCTGTTATAAAAGTGA+GGG - chr5_2:73090690-73090709 None:intergenic 25.0%
! AACATTCTGTTATAAAAGTG+AGG - chr5_2:73090691-73090710 None:intergenic 25.0%
! AGGGAAGAATTAATTACAAT+TGG + chr5_2:73090910-73090929 Msa0787380:intron 25.0%
! AGAATTAATTACAATTGGTG+AGG + chr5_2:73090915-73090934 Msa0787380:intron 25.0%
! CTTAACAGCTTATTAACAAT+TGG - chr5_2:73091219-73091238 None:intergenic 25.0%
! TACACCCAAAAGAAATAAAA+AGG + chr5_2:73091391-73091410 Msa0787380:intron 25.0%
!!! CTTCTCCTTTTTATTTCTTT+TGG - chr5_2:73091399-73091418 None:intergenic 25.0%
! CAAAAGAAATAAAAAGGAGA+AGG + chr5_2:73091397-73091416 Msa0787380:intron 25.0%
!! AAATAAAAAGGAGAAGGTAT+AGG + chr5_2:73091403-73091422 Msa0787380:intron 25.0%
! CTTAGTATTAAGCAATAAGA+TGG + chr5_2:73091539-73091558 Msa0787380:intron 25.0%
! TAACACTTCTAAATGAAATC+AGG + chr5_2:73091871-73091890 Msa0787380:intron 25.0%
!! TCAATTTTAGACTTTATCTC+TGG - chr5_2:73091926-73091945 None:intergenic 25.0%
!!! AAATGTTTATGTTTTCTGGT+AGG - chr5_2:73091949-73091968 None:intergenic 25.0%
!! CCAAAAATGTTTATGTTTTC+TGG - chr5_2:73091953-73091972 None:intergenic 25.0%
!! CCAGAAAACATAAACATTTT+TGG + chr5_2:73091950-73091969 Msa0787380:CDS 25.0%
!! GAATATACCTTTCACATTTT+GGG - chr5_2:73092296-73092315 None:intergenic 25.0%
!! TGAATATACCTTTCACATTT+TGG - chr5_2:73092297-73092316 None:intergenic 25.0%
!!! GCCTATGTGTTTTTTTTTAA+CGG + chr5_2:73092369-73092388 Msa0787380:three_prime_UTR 25.0%
! ACCGTTAAAAAAAAACACAT+AGG - chr5_2:73092373-73092392 None:intergenic 25.0%
! TATTTCACCTAAGCTAATAA+GGG - chr5_2:73092462-73092481 None:intergenic 25.0%
! TTATTTCACCTAAGCTAATA+AGG - chr5_2:73092463-73092482 None:intergenic 25.0%
ATGTGTATTAAAGGAACTTG+TGG - chr5_2:73088174-73088193 None:intergenic 30.0%
TGAGCTTCTTAATGGAAATT+GGG + chr5_2:73088765-73088784 Msa0787380:CDS 30.0%
AGTTTGATTGACATCATAGT+TGG + chr5_2:73088979-73088998 Msa0787380:intron 30.0%
GTTTGATTGACATCATAGTT+GGG + chr5_2:73088980-73088999 Msa0787380:intron 30.0%
! TACGTTTTATGAGACTGTTT+GGG - chr5_2:73089472-73089491 None:intergenic 30.0%
! ATACGTTTTATGAGACTGTT+TGG - chr5_2:73089473-73089492 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr5_2:73089497-73089516 None:intergenic 30.0%
ACTTTGCATTGAAAACATAG+AGG + chr5_2:73089545-73089564 Msa0787380:intron 30.0%
! ATGATTGTCAAACTGATTTC+AGG + chr5_2:73089665-73089684 Msa0787380:intron 30.0%
AAAAAAAGAGCAAACCTAGT+AGG + chr5_2:73089963-73089982 Msa0787380:intron 30.0%
TATCTAATGAGAAAAGGCTT+TGG - chr5_2:73090029-73090048 None:intergenic 30.0%
AATCACAACACAACATCAAT+TGG - chr5_2:73090146-73090165 None:intergenic 30.0%
CAATTTACAAAAGCCTTAGT+TGG + chr5_2:73090389-73090408 Msa0787380:intron 30.0%
TGAGAAATATTGTCAGAAGT+TGG - chr5_2:73090647-73090666 None:intergenic 30.0%
ATTAATTACAATTGGTGAGG+TGG + chr5_2:73090918-73090937 Msa0787380:intron 30.0%
TTGGTTAGGAAAATTATCTC+TGG + chr5_2:73091027-73091046 Msa0787380:intron 30.0%
TTAGGAAAATTATCTCTGGT+AGG + chr5_2:73091031-73091050 Msa0787380:intron 30.0%
GAAGAAAAGGAAATAACCAA+GGG - chr5_2:73091079-73091098 None:intergenic 30.0%
AGAAGAAAAGGAAATAACCA+AGG - chr5_2:73091080-73091099 None:intergenic 30.0%
AATAGCTCTTACAGAAGAAA+AGG - chr5_2:73091092-73091111 None:intergenic 30.0%
ACTGAGAATTCAAGTATCAA+TGG - chr5_2:73091146-73091165 None:intergenic 30.0%
AAAAACAATACTGTGAACTC+AGG - chr5_2:73091620-73091639 None:intergenic 30.0%
ATCACTGACATTAATTCAAC+AGG - chr5_2:73091755-73091774 None:intergenic 30.0%
AATCAGGTTACATTCAAAGA+AGG + chr5_2:73091887-73091906 Msa0787380:intron 30.0%
! ATTTTAGACTTTATCTCTGG+AGG - chr5_2:73091923-73091942 None:intergenic 30.0%
TACTTCCTACTAATCAAGAA+GGG - chr5_2:73092191-73092210 None:intergenic 30.0%
TTACTTCCTACTAATCAAGA+AGG - chr5_2:73092192-73092211 None:intergenic 30.0%
TCAAGCTGTTGTGTATTTAA+AGG + chr5_2:73092339-73092358 Msa0787380:three_prime_UTR 30.0%
ATTTCACCTAAGCTAATAAG+GGG - chr5_2:73092461-73092480 None:intergenic 30.0%
GAAAGTGAATCACCCAAATT+TGG - chr5_2:73088152-73088171 None:intergenic 35.0%
ACGGTTGAAGCTGAAAAATT+TGG - chr5_2:73088206-73088225 None:intergenic 35.0%
AAGAGAGAGAAGAAGGTTTA+GGG - chr5_2:73088285-73088304 None:intergenic 35.0%
CTCTTGTTGATACGGTTTAT+GGG + chr5_2:73088638-73088657 Msa0787380:CDS 35.0%
CAATTTCCATTAAGAAGCTC+AGG - chr5_2:73088766-73088785 None:intergenic 35.0%
CTGAGCTTCTTAATGGAAAT+TGG + chr5_2:73088764-73088783 Msa0787380:CDS 35.0%
TATACTATGAAGCACAAGCA+CGG + chr5_2:73089017-73089036 Msa0787380:intron 35.0%
ACGTCACACTGATAATAAGT+TGG + chr5_2:73089060-73089079 Msa0787380:intron 35.0%
!! GTTGGGAGTATTTAGAACTT+AGG + chr5_2:73089229-73089248 Msa0787380:intron 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr5_2:73089517-73089536 Msa0787380:intron 35.0%
!!! AAACGAAGGTATTTTTGCCA+CGG + chr5_2:73089582-73089601 Msa0787380:intron 35.0%
!!! TTTTGAGTTAGTTACATCCG+TGG - chr5_2:73089602-73089621 None:intergenic 35.0%
! ATTTTATCCACCTTCACCAA+AGG - chr5_2:73089739-73089758 None:intergenic 35.0%
TGAAAGATGATGAGGCAAAA+GGG - chr5_2:73089819-73089838 None:intergenic 35.0%
AGAATACCTGTATTCTTGCA+GGG - chr5_2:73089870-73089889 None:intergenic 35.0%
! TATTTTGCCTTTCACCTACT+AGG - chr5_2:73089980-73089999 None:intergenic 35.0%
CACAATATCAAGGATTGTGA+CGG - chr5_2:73090072-73090091 None:intergenic 35.0%
TTGATGTTGTGTTGTGATTG+CGG + chr5_2:73090147-73090166 Msa0787380:intron 35.0%
TGAGAGTCTTAATCACTCTT+GGG - chr5_2:73090420-73090439 None:intergenic 35.0%
TTGAGAGTCTTAATCACTCT+TGG - chr5_2:73090421-73090440 None:intergenic 35.0%
! TCACTAAGTCTGAAGCTAAA+GGG - chr5_2:73090454-73090473 None:intergenic 35.0%
! ATCACTAAGTCTGAAGCTAA+AGG - chr5_2:73090455-73090474 None:intergenic 35.0%
CTGTTATAAAAGTGAGGGAA+AGG - chr5_2:73090685-73090704 None:intergenic 35.0%
TTAGTCCAGTAAGAGTTAGT+GGG - chr5_2:73090734-73090753 None:intergenic 35.0%
TTTCCAAATTGCTGACCTAT+GGG - chr5_2:73090861-73090880 None:intergenic 35.0%
! CAATTTGGAAAGTGTATGTC+AGG + chr5_2:73090870-73090889 Msa0787380:intron 35.0%
! GAGAGAATCATTCATGCTTT+TGG + chr5_2:73090997-73091016 Msa0787380:intron 35.0%
!! TCATGCTTTTGGTGATTTGT+TGG + chr5_2:73091008-73091027 Msa0787380:intron 35.0%
!!! CTTTTGGTGATTTGTTGGTT+AGG + chr5_2:73091013-73091032 Msa0787380:intron 35.0%
CTATCACCTAGCAAGTTAAA+CGG + chr5_2:73091168-73091187 Msa0787380:intron 35.0%
! AGTTAAACGGTTGAGTTTTG+TGG + chr5_2:73091181-73091200 Msa0787380:intron 35.0%
!! GTTAAACGGTTGAGTTTTGT+GGG + chr5_2:73091182-73091201 Msa0787380:intron 35.0%
CAACACATACATATTGCTCA+AGG + chr5_2:73091259-73091278 Msa0787380:intron 35.0%
ACAAACAGAAGAGCTTATGA+AGG - chr5_2:73091494-73091513 None:intergenic 35.0%
AAGAACAAATACAACGTGAC+TGG - chr5_2:73091686-73091705 None:intergenic 35.0%
!! AAAAAGTTCTAAGCAAGCTG+AGG - chr5_2:73091824-73091843 None:intergenic 35.0%
!! AGTATATCACGTGTCATTTC+AGG + chr5_2:73092034-73092053 Msa0787380:CDS 35.0%
TCTTACCACATATCTTGACA+AGG + chr5_2:73092108-73092127 Msa0787380:CDS 35.0%
ACTTCCTACTAATCAAGAAG+GGG - chr5_2:73092190-73092209 None:intergenic 35.0%
!! ATACCTTTCACATTTTGGGT+GGG - chr5_2:73092292-73092311 None:intergenic 35.0%
! TATACCTTTCACATTTTGGG+TGG - chr5_2:73092293-73092312 None:intergenic 35.0%
GAATTACAGGTTTACAACAC+AGG - chr5_2:73092404-73092423 None:intergenic 35.0%
TTTCACCTAAGCTAATAAGG+GGG - chr5_2:73092460-73092479 None:intergenic 35.0%
GAAGAGAGAGAAGAAGGTTT+AGG - chr5_2:73088286-73088305 None:intergenic 40.0%
! GATAAAGATGGTTTGGCTTC+GGG - chr5_2:73088451-73088470 None:intergenic 40.0%
! GGATAAAGATGGTTTGGCTT+CGG - chr5_2:73088452-73088471 None:intergenic 40.0%
CTTGGAGGATAAAGATGGTT+TGG - chr5_2:73088458-73088477 None:intergenic 40.0%
CAAACCATCTTTATCCTCCA+AGG + chr5_2:73088456-73088475 Msa0787380:CDS 40.0%
GAAACCTTGGAGGATAAAGA+TGG - chr5_2:73088463-73088482 None:intergenic 40.0%
TCTTTATCCTCCAAGGTTTC+AGG + chr5_2:73088463-73088482 Msa0787380:CDS 40.0%
TTCGAAGAACGAGGATGAAT+GGG + chr5_2:73088495-73088514 Msa0787380:CDS 40.0%
GAAACGTGCTCTTGTTGATA+CGG + chr5_2:73088630-73088649 Msa0787380:CDS 40.0%
GCTCTTGTTGATACGGTTTA+TGG + chr5_2:73088637-73088656 Msa0787380:CDS 40.0%
!! GCTGTTTTCACAAGCTATCT+TGG + chr5_2:73089379-73089398 Msa0787380:intron 40.0%
AAGTAAAGGCCTGTTTGGAT+TGG - chr5_2:73089529-73089548 None:intergenic 40.0%
ATGCAAAGTAAAGGCCTGTT+TGG - chr5_2:73089534-73089553 None:intergenic 40.0%
CTGAAAGATGATGAGGCAAA+AGG - chr5_2:73089820-73089839 None:intergenic 40.0%
AGATGCACTGAAAGATGATG+AGG - chr5_2:73089827-73089846 None:intergenic 40.0%
GAGAATACCTGTATTCTTGC+AGG - chr5_2:73089871-73089890 None:intergenic 40.0%
! TTCTAGCTGTCATGTGAAAG+AGG + chr5_2:73089938-73089957 Msa0787380:intron 40.0%
CGTCACAATCCTTGATATTG+TGG + chr5_2:73090070-73090089 Msa0787380:intron 40.0%
TGCAACTCTCCACAATATCA+AGG - chr5_2:73090082-73090101 None:intergenic 40.0%
TCGTATAACCCATCTCATCT+AGG - chr5_2:73090233-73090252 None:intergenic 40.0%
ATGGAAAAGGTTGAGCACAA+AGG + chr5_2:73090516-73090535 Msa0787380:intron 40.0%
TGGTTAGTAAAGTTTCCCTC+TGG - chr5_2:73090627-73090646 None:intergenic 40.0%
ATATCCCCACTAACTCTTAC+TGG + chr5_2:73090726-73090745 Msa0787380:intron 40.0%
TAGTCCAGTAAGAGTTAGTG+GGG - chr5_2:73090733-73090752 None:intergenic 40.0%
CTTAGTCCAGTAAGAGTTAG+TGG - chr5_2:73090735-73090754 None:intergenic 40.0%
CACTAACTCTTACTGGACTA+AGG + chr5_2:73090733-73090752 Msa0787380:intron 40.0%
! GTTGATAGGACTCTGTGTTT+GGG - chr5_2:73090759-73090778 None:intergenic 40.0%
! TGTTGATAGGACTCTGTGTT+TGG - chr5_2:73090760-73090779 None:intergenic 40.0%
AACACAGAGTCCTATCAACA+TGG + chr5_2:73090760-73090779 Msa0787380:intron 40.0%
!! GGAGTATTGATAGGACTTGT+GGG + chr5_2:73090798-73090817 Msa0787380:intron 40.0%
TTCCAAATTGCTGACCTATG+GGG - chr5_2:73090860-73090879 None:intergenic 40.0%
CTTTCCAAATTGCTGACCTA+TGG - chr5_2:73090862-73090881 None:intergenic 40.0%
! GGAAAGTGTATGTCAGGAAA+AGG + chr5_2:73090876-73090895 Msa0787380:intron 40.0%
AGTGTATGTCAGGAAAAGGA+AGG + chr5_2:73090880-73090899 Msa0787380:intron 40.0%
GTGTATGTCAGGAAAAGGAA+GGG + chr5_2:73090881-73090900 Msa0787380:intron 40.0%
TGTATGTCAGGAAAAGGAAG+GGG + chr5_2:73090882-73090901 Msa0787380:intron 40.0%
ATTACAATTGGTGAGGTGGT+AGG + chr5_2:73090922-73090941 Msa0787380:intron 40.0%
AGGTGGTAGGAATATTCTCT+AGG + chr5_2:73090935-73090954 Msa0787380:intron 40.0%
TGGTAGGAATATTCTCTAGG+TGG + chr5_2:73090938-73090957 Msa0787380:intron 40.0%
GGGAAAATATCCAGATCCTA+TGG - chr5_2:73091059-73091078 None:intergenic 40.0%
! AGGATCTGGATATTTTCCCT+TGG + chr5_2:73091060-73091079 Msa0787380:intron 40.0%
!! ACTCAACCGTTTAACTTGCT+AGG - chr5_2:73091177-73091196 None:intergenic 40.0%
! CATATTGCTCAAGGTACTAC+TGG + chr5_2:73091268-73091287 Msa0787380:intron 40.0%
! CTGGTTTGCATCTTTCTGAA+AGG + chr5_2:73091287-73091306 Msa0787380:intron 40.0%
ACTAACGTAGTATGCCAGTA+GGG - chr5_2:73091341-73091360 None:intergenic 40.0%
AACTAACGTAGTATGCCAGT+AGG - chr5_2:73091342-73091361 None:intergenic 40.0%
TAGTTCCTTAGTTGTGCCTT+TGG + chr5_2:73091357-73091376 Msa0787380:intron 40.0%
AGTTCCTTAGTTGTGCCTTT+GGG + chr5_2:73091358-73091377 Msa0787380:intron 40.0%
ATATTTGCATGACAGAGCAG+CGG - chr5_2:73091726-73091745 None:intergenic 40.0%
! TTTTGGCCAAAATCTTAGCC+TGG + chr5_2:73091967-73091986 Msa0787380:CDS 40.0%
TTTGGCCAAAATCTTAGCCT+GGG + chr5_2:73091968-73091987 Msa0787380:CDS 40.0%
CAAGTCCTTGTCAAGATATG+TGG - chr5_2:73092116-73092135 None:intergenic 40.0%
ACAAGGACTTGCGAATATCA+AGG + chr5_2:73092125-73092144 Msa0787380:CDS 40.0%
CAAGGACTTGCGAATATCAA+GGG + chr5_2:73092126-73092145 Msa0787380:CDS 40.0%
AAGGACTTGCGAATATCAAG+GGG + chr5_2:73092127-73092146 Msa0787380:CDS 40.0%
TGTTTGTCCTTGCAAGAGAA+GGG + chr5_2:73092161-73092180 Msa0787380:CDS 40.0%
AGAGAAGAGACATGGCGAAA+CGG - chr5_2:73088225-73088244 None:intergenic 45.0%
TGTGGAAGAGAGAAGAGACA+TGG - chr5_2:73088233-73088252 None:intergenic 45.0%
!!! GGGTTTTGAGAGAAGATGAG+AGG - chr5_2:73088265-73088284 None:intergenic 45.0%
GGAAGAGAAGAGAGAGAAGA+AGG - chr5_2:73088292-73088311 None:intergenic 45.0%
CACCGATATCTCCGATGAAT+GGG + chr5_2:73088405-73088424 Msa0787380:CDS 45.0%
ACCGATATCTCCGATGAATG+GGG + chr5_2:73088406-73088425 Msa0787380:CDS 45.0%
ACCCCATTCATCGGAGATAT+CGG - chr5_2:73088410-73088429 None:intergenic 45.0%
GGATTTCTCACCCCATTCAT+CGG - chr5_2:73088419-73088438 None:intergenic 45.0%
!! ATCCTCCAAGGTTTCAGGTT+CGG + chr5_2:73088468-73088487 Msa0787380:CDS 45.0%
CATTCATCCTCGTTCTTCGA+AGG - chr5_2:73088496-73088515 None:intergenic 45.0%
CTTCGAAGAACGAGGATGAA+TGG + chr5_2:73088494-73088513 Msa0787380:CDS 45.0%
TCGAAGAACGAGGATGAATG+GGG + chr5_2:73088496-73088515 Msa0787380:CDS 45.0%
AGCTATAGCGATGCTGGAAA+TGG + chr5_2:73088544-73088563 Msa0787380:CDS 45.0%
GAGGAACCTGAGCTTCTTAA+TGG + chr5_2:73088757-73088776 Msa0787380:CDS 45.0%
AGAGTCTGACACGACACATT+TGG - chr5_2:73089122-73089141 None:intergenic 45.0%
!! AGGAGCATTACCTTTGGTGA+AGG + chr5_2:73089726-73089745 Msa0787380:CDS 45.0%
AGCATTACCTTTGGTGAAGG+TGG + chr5_2:73089729-73089748 Msa0787380:CDS 45.0%
GTTCACAACAGTGGAGCTAT+AGG - chr5_2:73089779-73089798 None:intergenic 45.0%
TGTCACAGAGTTCACAACAG+TGG - chr5_2:73089788-73089807 None:intergenic 45.0%
AGGGCTTCGAACTTCAAATG+AGG - chr5_2:73089851-73089870 None:intergenic 45.0%
GAGCAAACCTAGTAGGTGAA+AGG + chr5_2:73089970-73089989 Msa0787380:intron 45.0%
ATGTTGTGTTGTGATTGCGG+AGG + chr5_2:73090150-73090169 Msa0787380:intron 45.0%
TGAGCACAAAGGCTCTACAA+TGG + chr5_2:73090527-73090546 Msa0787380:intron 45.0%
AGTGTTCACACTTCACACTC+TGG - chr5_2:73090580-73090599 None:intergenic 45.0%
!! TAGAAGCATTGTGCTCTGGT+AGG - chr5_2:73090603-73090622 None:intergenic 45.0%
!! TGGTTAGAAGCATTGTGCTC+TGG - chr5_2:73090607-73090626 None:intergenic 45.0%
AGCACAATGCTTCTAACCAG+AGG + chr5_2:73090608-73090627 Msa0787380:intron 45.0%
GCACAATGCTTCTAACCAGA+GGG + chr5_2:73090609-73090628 Msa0787380:intron 45.0%
TCACAAGCAGCCATGTTGAT+AGG - chr5_2:73090773-73090792 None:intergenic 45.0%
ATCAACATGGCTGCTTGTGA+CGG + chr5_2:73090773-73090792 Msa0787380:intron 45.0%
!! GGGAGTATTGATAGGACTTG+TGG + chr5_2:73090797-73090816 Msa0787380:intron 45.0%
TCCAAATTGCTGACCTATGG+GGG - chr5_2:73090859-73090878 None:intergenic 45.0%
GTATGTCAGGAAAAGGAAGG+GGG + chr5_2:73090883-73090902 Msa0787380:intron 45.0%
TATGTCAGGAAAAGGAAGGG+GGG + chr5_2:73090884-73090903 Msa0787380:intron 45.0%
TTATCTCTGGTAGGAGCCAT+AGG + chr5_2:73091040-73091059 Msa0787380:intron 45.0%
! TGTTGTTGTTCAGACGAGAC+AGG - chr5_2:73091244-73091263 None:intergenic 45.0%
GTGTAGTCAAAGATGCCCAA+AGG - chr5_2:73091376-73091395 None:intergenic 45.0%
TATTTGCATGACAGAGCAGC+GGG - chr5_2:73091725-73091744 None:intergenic 45.0%
TTGGCCAAAATCTTAGCCTG+GGG + chr5_2:73091969-73091988 Msa0787380:CDS 45.0%
CCAGGTATGGGAATCTTAAG+AGG - chr5_2:73092067-73092086 None:intergenic 45.0%
CCTCTTAAGATTCCCATACC+TGG + chr5_2:73092064-73092083 Msa0787380:CDS 45.0%
TTGCGAATATCAAGGGGAGA+TGG + chr5_2:73092133-73092152 Msa0787380:CDS 45.0%
CTGTTTGTCCTTGCAAGAGA+AGG + chr5_2:73092160-73092179 Msa0787380:CDS 45.0%
GAGTCCCCTTCTTGATTAGT+AGG + chr5_2:73092183-73092202 Msa0787380:exon 45.0%
! GTTCACCCCCTTATTAGCTT+AGG + chr5_2:73092452-73092471 Msa0787380:three_prime_UTR 45.0%
!!! AATAATAATATATATTGATT+TGG + chr5_2:73092478-73092497 Msa0787380:three_prime_UTR 5.0%
GATGAGAGGAACACGTAGTG+TGG - chr5_2:73088251-73088270 None:intergenic 50.0%
GGAGAGAGAGAGATTCGAGA+GGG - chr5_2:73088313-73088332 None:intergenic 50.0%
AGGAGAGAGAGAGATTCGAG+AGG - chr5_2:73088314-73088333 None:intergenic 50.0%
TGAAGCGGAGAGAAGGGAAT+CGG - chr5_2:73088345-73088364 None:intergenic 50.0%
TCATCGGAGATATCGGTGGA+TGG - chr5_2:73088403-73088422 None:intergenic 50.0%
CCATTCATCGGAGATATCGG+TGG - chr5_2:73088407-73088426 None:intergenic 50.0%
CCACCGATATCTCCGATGAA+TGG + chr5_2:73088404-73088423 Msa0787380:CDS 50.0%
! AGATGGTTTGGCTTCGGGTA+CGG - chr5_2:73088446-73088465 None:intergenic 50.0%
AACCGAACCTGAAACCTTGG+AGG - chr5_2:73088473-73088492 None:intergenic 50.0%
AGGAACCGAACCTGAAACCT+TGG - chr5_2:73088476-73088495 None:intergenic 50.0%
TTCGGTTCCTTCGAAGAACG+AGG + chr5_2:73088486-73088505 Msa0787380:CDS 50.0%
AACGAGGATGAATGGGGAGA+AGG + chr5_2:73088502-73088521 Msa0787380:CDS 50.0%
GAAGGAGCGAAAAATGACGC+CGG + chr5_2:73088520-73088539 Msa0787380:CDS 50.0%
AAGGAGCGAAAAATGACGCC+GGG + chr5_2:73088521-73088540 Msa0787380:CDS 50.0%
CGATGCTGGAAATGGAACTC+CGG + chr5_2:73088552-73088571 Msa0787380:CDS 50.0%
AGGAGGGAATGATGAGCTTG+AGG + chr5_2:73088603-73088622 Msa0787380:CDS 50.0%
GGAGGGAATGATGAGCTTGA+GGG + chr5_2:73088604-73088623 Msa0787380:CDS 50.0%
GAGGGAATGATGAGCTTGAG+GGG + chr5_2:73088605-73088624 Msa0787380:CDS 50.0%
ACGGTTTATGGGACTGAGCT+TGG + chr5_2:73088649-73088668 Msa0787380:CDS 50.0%
CGGTTTATGGGACTGAGCTT+GGG + chr5_2:73088650-73088669 Msa0787380:CDS 50.0%
GGAAGTTCGAGCTGAAGTGT+CGG + chr5_2:73088687-73088706 Msa0787380:CDS 50.0%
AGAAGCTCAGGTTCCTCAAC+CGG - chr5_2:73088754-73088773 None:intergenic 50.0%
TGAAGCACAAGCACGGATAC+CGG + chr5_2:73089024-73089043 Msa0787380:intron 50.0%
! ACACTCCACATTGAAGGCGT+GGG - chr5_2:73089163-73089182 None:intergenic 50.0%
! GCACTGACACTCCACATTGA+AGG - chr5_2:73089169-73089188 None:intergenic 50.0%
AATGCTCCTGCTGCTAGAAG+AGG - chr5_2:73089715-73089734 None:intergenic 50.0%
!! AGCAGCAGGAGCATTACCTT+TGG + chr5_2:73089720-73089739 Msa0787380:CDS 50.0%
TCGAAGCCCTGCAAGAATAC+AGG + chr5_2:73089861-73089880 Msa0787380:CDS 50.0%
CACAAAGAGCCATGATGTCG+TGG + chr5_2:73090173-73090192 Msa0787380:intron 50.0%
CAAGTGTAGCCACGACATCA+TGG - chr5_2:73090185-73090204 None:intergenic 50.0%
GTGGCTACACTTGCAGTTGT+GGG + chr5_2:73090192-73090211 Msa0787380:intron 50.0%
CTCTTGGGAGCAACCAACTA+AGG - chr5_2:73090405-73090424 None:intergenic 50.0%
GCACAAAGGCTCTACAATGG+TGG + chr5_2:73090530-73090549 Msa0787380:intron 50.0%
!! GTGACGGAGGGAGTATTGAT+AGG + chr5_2:73090789-73090808 Msa0787380:intron 50.0%
GGTCAACACCAGTATCCACA+TGG - chr5_2:73090838-73090857 None:intergenic 50.0%
!! ATACTGGTGTTGACCCCCAT+AGG + chr5_2:73090843-73090862 Msa0787380:intron 50.0%
ACCCCCATAGGTCAGCAATT+TGG + chr5_2:73090855-73090874 Msa0787380:intron 50.0%
! GATGCCCAAAGGCACAACTA+AGG - chr5_2:73091365-73091384 None:intergenic 50.0%
CTTGCAACCACATTCTCCAG+AGG - chr5_2:73092016-73092035 None:intergenic 50.0%
AGATTCCCATACCTGGTGAG+AGG + chr5_2:73092071-73092090 Msa0787380:CDS 50.0%
CTTGTCCTCTCACCAGGTAT+GGG - chr5_2:73092079-73092098 None:intergenic 50.0%
CGAATATCAAGGGGAGATGG+CGG + chr5_2:73092136-73092155 Msa0787380:CDS 50.0%
GAATATCAAGGGGAGATGGC+GGG + chr5_2:73092137-73092156 Msa0787380:CDS 50.0%
!! TCACATTTTGGGTGGGCAGA+GGG - chr5_2:73092285-73092304 None:intergenic 50.0%
!! TTCACATTTTGGGTGGGCAG+AGG - chr5_2:73092286-73092305 None:intergenic 50.0%
CTGCCCACCCAAAATGTGAA+AGG + chr5_2:73092286-73092305 Msa0787380:three_prime_UTR 50.0%
CGGAGATGAAGCGGAGAGAA+GGG - chr5_2:73088351-73088370 None:intergenic 55.0%
ATCAGCGTCTCCGATGTCAC+CGG - chr5_2:73088377-73088396 None:intergenic 55.0%
! TTTGGCTTCGGGTACGGGTT+CGG - chr5_2:73088440-73088459 None:intergenic 55.0%
! GATGGTTTGGCTTCGGGTAC+GGG - chr5_2:73088445-73088464 None:intergenic 55.0%
TCCAGCATCGCTATAGCTCC+CGG - chr5_2:73088542-73088561 None:intergenic 55.0%
TCATTCCCTCCTTCCTCCAC+CGG - chr5_2:73088595-73088614 None:intergenic 55.0%
ACTGAGCTTGGGTTTCGAGC+TGG + chr5_2:73088661-73088680 Msa0787380:CDS 55.0%
CTGAGCTTGGGTTTCGAGCT+GGG + chr5_2:73088662-73088681 Msa0787380:CDS 55.0%
!! AGCTGAAGTGTCGGAGTTCG+TGG + chr5_2:73088696-73088715 Msa0787380:CDS 55.0%
GGAAGCTGCTAACCCTACTC+CGG + chr5_2:73088726-73088745 Msa0787380:CDS 55.0%
ACAAGCACGGATACCGGACA+GGG + chr5_2:73089030-73089049 Msa0787380:intron 55.0%
TGACGTCTCAATGCCCTGTC+CGG - chr5_2:73089046-73089065 None:intergenic 55.0%
GACACTCCACATTGAAGGCG+TGG - chr5_2:73089164-73089183 None:intergenic 55.0%
CTGTTGCCTCTTCTAGCAGC+AGG + chr5_2:73089706-73089725 Msa0787380:CDS 55.0%
CGTGGCTACACTTGCAGTTG+TGG + chr5_2:73090191-73090210 Msa0787380:intron 55.0%
AACATGGCTGCTTGTGACGG+AGG + chr5_2:73090776-73090795 Msa0787380:intron 55.0%
! ACATGGCTGCTTGTGACGGA+GGG + chr5_2:73090777-73090796 Msa0787380:intron 55.0%
TCCACATGGAAGCCTGGATC+AGG - chr5_2:73090824-73090843 None:intergenic 55.0%
CCAGTATCCACATGGAAGCC+TGG - chr5_2:73090830-73090849 None:intergenic 55.0%
CCAGGCTTCCATGTGGATAC+TGG + chr5_2:73090827-73090846 Msa0787380:intron 55.0%
CTGGTAGGAGCCATAGGATC+TGG + chr5_2:73091046-73091065 Msa0787380:intron 55.0%
GCAAGAGTTGCTGACCCTAC+TGG + chr5_2:73091324-73091343 Msa0787380:intron 55.0%
! GAGGCCCCAGGCTAAGATTT+TGG - chr5_2:73091976-73091995 None:intergenic 55.0%
GCTTGTCCTCTCACCAGGTA+TGG - chr5_2:73092080-73092099 None:intergenic 55.0%
CAAGAGCTTGTCCTCTCACC+AGG - chr5_2:73092085-73092104 None:intergenic 55.0%
CTGGTGAGAGGACAAGCTCT+TGG + chr5_2:73092083-73092102 Msa0787380:CDS 55.0%
TTGGGTGGGCAGAGGGAAAT+GGG - chr5_2:73092278-73092297 None:intergenic 55.0%
TTTGGGTGGGCAGAGGGAAA+TGG - chr5_2:73092279-73092298 None:intergenic 55.0%
GAAGGGAATCGGTGAGAGCG+AGG - chr5_2:73088334-73088353 None:intergenic 60.0%
GCGGAGATGAAGCGGAGAGA+AGG - chr5_2:73088352-73088371 None:intergenic 60.0%
ATCTCCGCCACCGGTGACAT+CGG + chr5_2:73088364-73088383 Msa0787380:CDS 60.0%
GGAGCTTCGGTAGCAGAAGC+CGG - chr5_2:73088574-73088593 None:intergenic 60.0%
GGCTTCTGCTACCGAAGCTC+CGG + chr5_2:73088573-73088592 Msa0787380:CDS 60.0%
TTCTGCTACCGAAGCTCCGG+TGG + chr5_2:73088576-73088595 Msa0787380:CDS 60.0%
TCCTTCCTCCACCGGAGCTT+CGG - chr5_2:73088587-73088606 None:intergenic 60.0%
AAGCTCCGGTGGAGGAAGGA+GGG + chr5_2:73088587-73088606 Msa0787380:CDS 60.0%
GCTTGGGTTTCGAGCTGGGT+CGG + chr5_2:73088666-73088685 Msa0787380:CDS 60.0%
GTCGGAGTTCGTGGCTCAGT+TGG + chr5_2:73088705-73088724 Msa0787380:CDS 60.0%
TGCTAACCCTACTCCGGCTC+CGG + chr5_2:73088732-73088751 Msa0787380:CDS 60.0%
TCAGGTTCCTCAACCGGAGC+CGG - chr5_2:73088748-73088767 None:intergenic 60.0%
CACAAGCACGGATACCGGAC+AGG + chr5_2:73089029-73089048 Msa0787380:intron 60.0%
CAGCACCCACGCCTTCAATG+TGG + chr5_2:73089155-73089174 Msa0787380:intron 60.0%
AGGACTTGTGGGCCTGATCC+AGG + chr5_2:73090809-73090828 Msa0787380:intron 60.0%
GCCTGATCCAGGCTTCCATG+TGG + chr5_2:73090820-73090839 Msa0787380:intron 60.0%
! AGGAAAAGGAAGGGGGGTGC+AGG + chr5_2:73090890-73090909 Msa0787380:intron 60.0%
! GGAAAAGGAAGGGGGGTGCA+GGG + chr5_2:73090891-73090910 Msa0787380:intron 60.0%
GGGCCTCTGCAACAATCGCT+CGG + chr5_2:73091989-73092008 Msa0787380:CDS 60.0%
GGACCGAGCGATTGTTGCAG+AGG - chr5_2:73091995-73092014 None:intergenic 60.0%
GCAACAATCGCTCGGTCCTC+TGG + chr5_2:73091997-73092016 Msa0787380:CDS 60.0%
! GCTCGGTCCTCTGGAGAATG+TGG + chr5_2:73092006-73092025 Msa0787380:CDS 60.0%
GGGGACTCCCTTCTCTTGCA+AGG - chr5_2:73092171-73092190 None:intergenic 60.0%
TGGGTGGGCAGAGGGAAATG+GGG - chr5_2:73092277-73092296 None:intergenic 60.0%
CTCCGCTTCATCTCCGCCAC+CGG + chr5_2:73088355-73088374 Msa0787380:CDS 65.0%
!! CACCGGTGGCGGAGATGAAG+CGG - chr5_2:73088360-73088379 None:intergenic 65.0%
GTCTCCGATGTCACCGGTGG+CGG - chr5_2:73088371-73088390 None:intergenic 65.0%
AGCGTCTCCGATGTCACCGG+TGG - chr5_2:73088374-73088393 None:intergenic 65.0%
GCCGGGAGCTATAGCGATGC+TGG + chr5_2:73088538-73088557 Msa0787380:CDS 65.0%
TGCTACCGAAGCTCCGGTGG+AGG + chr5_2:73088579-73088598 Msa0787380:CDS 65.0%
ACCGAAGCTCCGGTGGAGGA+AGG + chr5_2:73088583-73088602 Msa0787380:CDS 65.0%
GAAGCTCCGGTGGAGGAAGG+AGG + chr5_2:73088586-73088605 Msa0787380:CDS 65.0%
CCTCAACCGGAGCCGGAGTA+GGG - chr5_2:73088741-73088760 None:intergenic 65.0%
TCCTCAACCGGAGCCGGAGT+AGG - chr5_2:73088742-73088761 None:intergenic 65.0%
! GCGTGGGTGCTGTCAGACAC+GGG - chr5_2:73089147-73089166 None:intergenic 65.0%
! GGCGTGGGTGCTGTCAGACA+CGG - chr5_2:73089148-73089167 None:intergenic 65.0%
GCGATTGTTGCAGAGGCCCC+AGG - chr5_2:73091988-73092007 None:intergenic 65.0%
GTGGGCAGAGGGAAATGGGG+TGG - chr5_2:73092274-73092293 None:intergenic 65.0%
CCCTACTCCGGCTCCGGTTG+AGG + chr5_2:73088738-73088757 Msa0787380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 73088136 73092501 73088136 ID=Msa0787380;Name=Msa0787380
chr5_2 mRNA 73088136 73092501 73088136 ID=Msa0787380-mRNA-1;Parent=Msa0787380;Name=Msa0787380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|0.5|1|3|300|355
chr5_2 exon 73088136 73088794 73088136 ID=Msa0787380-mRNA-1:exon:22292;Parent=Msa0787380-mRNA-1
chr5_2 exon 73089687 73089882 73089687 ID=Msa0787380-mRNA-1:exon:22293;Parent=Msa0787380-mRNA-1
chr5_2 exon 73091893 73092501 73091893 ID=Msa0787380-mRNA-1:exon:22294;Parent=Msa0787380-mRNA-1
chr5_2 five_prime_UTR 73088136 73088231 73088136 ID=Msa0787380-mRNA-1:five_prime_utr;Parent=Msa0787380-mRNA-1
chr5_2 CDS 73088232 73088794 73088232 ID=Msa0787380-mRNA-1:cds;Parent=Msa0787380-mRNA-1
chr5_2 CDS 73089687 73089882 73089687 ID=Msa0787380-mRNA-1:cds;Parent=Msa0787380-mRNA-1
chr5_2 CDS 73091893 73092201 73091893 ID=Msa0787380-mRNA-1:cds;Parent=Msa0787380-mRNA-1
chr5_2 three_prime_UTR 73092202 73092501 73092202 ID=Msa0787380-mRNA-1:three_prime_utr;Parent=Msa0787380-mRNA-1
Gene Sequence

>Msa0787380

ATGTCTCTTCTCTCTTCCACACTACGTGTTCCTCTCATCTTCTCTCAAAACCCTAAACCTTCTTCTCTCTCTTCTCTTCCCTCTCGAATCTCTCTCTCTCCTCGCTCTCACCGATTCCCTTCTCTCCGCTTCATCTCCGCCACCGGTGACATCGGAGACGCTGATATACCATCCACCGATATCTCCGATGAATGGGGTGAGAAATCCGAACCCGTACCCGAAGCCAAACCATCTTTATCCTCCAAGGTTTCAGGTTCGGTTCCTTCGAAGAACGAGGATGAATGGGGAGAAGGAGCGAAAAATGACGCCGGGAGCTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTACCGAAGCTCCGGTGGAGGAAGGAGGGAATGATGAGCTTGAGGGGTTGAAACGTGCTCTTGTTGATACGGTTTATGGGACTGAGCTTGGGTTTCGAGCTGGGTCGGAAGTTCGAGCTGAAGTGTCGGAGTTCGTGGCTCAGTTGGAAGCTGCTAACCCTACTCCGGCTCCGGTTGAGGAACCTGAGCTTCTTAATGGAAATTGGGTGTTGCTGTACACAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCTGTGACATTGTCTAGCCCTTTTGCCTCATCATCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAAGCCCTGCAAGAATACAGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAATCGCTCGGTCCTCTGGAGAATGTGGTTGCAAGTATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATATCTTGACAAGGACTTGCGAATATCAAGGGGAGATGGCGGGCTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>Msa0787380

MSLLSSTLRVPLIFSQNPKPSSLSSLPSRISLSPRSHRFPSLRFISATGDIGDADIPSTDISDEWGEKSEPVPEAKPSLSSKVSGSVPSKNEDEWGEGAKNDAGSYSDAGNGTPASATEAPVEEGGNDELEGLKRALVDTVYGTELGFRAGSEVRAEVSEFVAQLEAANPTPAPVEEPELLNGNWVLLYTASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSVTLSSPFASSSFSASASFEVRSPARIQVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVASISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*