AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0952990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952990 MtrunA17_Chr6g0470101 94.156 308 14 1 1 308 51 354 0.0 571
Msa0952990 MtrunA17_Chr3g0086601 45.771 201 108 1 41 241 75 274 3.14e-55 180
Msa0952990 MtrunA17_Chr5g0398991 37.349 166 101 2 58 220 71 236 3.88e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952990 AT4G21190.1 66.667 243 78 1 1 240 1 243 1.20e-115 336
Msa0952990 AT4G18975.2 46.701 197 104 1 42 238 58 253 1.20e-58 189
Msa0952990 AT4G18975.3 46.701 197 104 1 42 238 85 280 2.31e-58 189
Msa0952990 AT4G18975.4 46.701 197 104 1 42 238 85 280 2.31e-58 189
Msa0952990 AT4G18975.1 46.701 197 104 1 42 238 85 280 2.31e-58 189
Msa0952990 AT1G04590.1 37.912 182 112 1 40 220 131 312 3.68e-36 134
Msa0952990 AT1G04590.2 37.838 185 111 2 40 220 131 315 1.35e-34 129

Find 102 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGATTCATCTGAGTTTA+TGG 0.136082 6_3:-48226339 Msa0952990:CDS
ATCGTGGACTTCGCCATTTC+AGG 0.196538 6_3:+48226051 None:intergenic
ACGTATCTATCGACTTTATT+AGG 0.199277 6_3:+48226497 None:intergenic
CTTCCAAACTCGAGGATATC+TGG 0.200744 6_3:+48229983 None:intergenic
TCTCGTTATACTTCTAAATT+TGG 0.208592 6_3:+48226314 None:intergenic
CTGAATTGAAGTTGTGTATT+TGG 0.241402 6_3:-48225990 Msa0952990:three_prime_UTR
TCCTATAATTACAGTGAAAA+AGG 0.241597 6_3:-48228516 Msa0952990:CDS
TCGCGTGTAACTAACATTAA+TGG 0.254912 6_3:+48226249 None:intergenic
AGAAGAGACTTCAGAGTTAA+TGG 0.256931 6_3:-48226420 Msa0952990:CDS
CGAGATTTCCGGCCAGGTTT+GGG 0.266893 6_3:+48230234 None:intergenic
CCGAGATTTCCGGCCAGGTT+TGG 0.269238 6_3:+48230233 None:intergenic
AATGTCAAAGAAGAAGTTTA+TGG 0.291907 6_3:-48228575 Msa0952990:CDS
AATGCATATAGGCTTTGATT+AGG 0.320445 6_3:-48225917 Msa0952990:three_prime_UTR
CCCTACAATCTCTATATATT+AGG 0.327339 6_3:+48225948 None:intergenic
TCCTCTCTTAAGCCTGGATT+TGG 0.327589 6_3:+48226452 None:intergenic
CTAACTCCTCCCGAGATTTC+CGG 0.340602 6_3:+48230223 None:intergenic
AAGGAAAGCGTGTAAGAATC+AGG 0.347993 6_3:-48226532 Msa0952990:CDS
TGAAACTATAGGTAACAAAA+TGG 0.351629 6_3:-48228256 Msa0952990:intron
TACACGCGAAATCATTATTT+CGG 0.352288 6_3:-48226235 Msa0952990:three_prime_UTR
GACCCAGATATCCTCGAGTT+TGG 0.363858 6_3:-48229986 Msa0952990:CDS
TGAATCATCTGAAATTTGTT+TGG 0.368446 6_3:+48226352 None:intergenic
TTGACGAAGCAGAAGAGCTT+TGG 0.377250 6_3:-48228157 Msa0952990:CDS
TATTTGATATGTTAATTTGT+TGG 0.381277 6_3:+48230131 None:intergenic
ATGCATATAGGCTTTGATTA+GGG 0.389204 6_3:-48225916 Msa0952990:three_prime_UTR
GAAGTTCTGTGTTATATTGT+TGG 0.389600 6_3:-48225884 Msa0952990:three_prime_UTR
CCAAACCTGGCCGGAAATCT+CGG 0.400565 6_3:-48230233 Msa0952990:five_prime_UTR
TAGTAGTTCTGTTGTCTCAA+TGG 0.409178 6_3:-48226648 Msa0952990:CDS
TGATATCCTCATAAATGAAA+TGG 0.417527 6_3:+48226112 None:intergenic
AAAATGTAAGCCTGACAATC+TGG 0.422289 6_3:-48226141 Msa0952990:three_prime_UTR
TGGTAGCCATTTCATTTATG+AGG 0.423150 6_3:-48226118 Msa0952990:three_prime_UTR
CTTCCGTAGAATAATGGATT+GGG 0.424724 6_3:+48230346 None:intergenic
TCTACTTCAGATTCCTGAAA+TGG 0.427650 6_3:-48226064 Msa0952990:three_prime_UTR
CTATATTCCCATTGCGGTGG+TGG 0.430282 6_3:+48226563 None:intergenic
AAGTAGATATGTTACTTGAT+TGG 0.432968 6_3:+48226080 None:intergenic
AAAATATCCACCACCGCAAT+GGG 0.433687 6_3:-48226570 Msa0952990:CDS
AAGGTATTTGCTGCTGCAAA+AGG 0.436480 6_3:-48230014 Msa0952990:CDS
TCCTCCCGAGATTTCCGGCC+AGG 0.439659 6_3:+48230228 None:intergenic
CTGCTTGTGGCGGTGGCTGA+TGG 0.447414 6_3:+48230200 None:intergenic
AAGGGTCAAGGAAAGACAAT+AGG 0.447819 6_3:-48228224 Msa0952990:CDS
CTCTAGAATACGAGAAAGAA+TGG 0.450096 6_3:-48228484 Msa0952990:CDS
AGGTAAGGTGAAGACACTTT+AGG 0.452793 6_3:-48226187 Msa0952990:three_prime_UTR
ACTCGAGGATATCTGGGTCT+TGG 0.455137 6_3:+48229990 None:intergenic
CTATCTTCCTCTCTTAAGCC+TGG 0.457380 6_3:+48226446 None:intergenic
TTCGACTTGCTGCTGATGTA+AGG 0.458742 6_3:+48230282 None:intergenic
CTCTTGATACCTATGTCGCT+TGG 0.459035 6_3:-48228550 Msa0952990:CDS
GAAGTATAACGAGAGAAAGA+TGG 0.461174 6_3:-48226305 Msa0952990:exon
ATGGCTACCACCAGATTGTC+AGG 0.464476 6_3:+48226131 None:intergenic
AGCATTACTGCTTGTGGCGG+TGG 0.467846 6_3:+48230193 None:intergenic
TCTTCCGTAGAATAATGGAT+TGG 0.468516 6_3:+48230345 None:intergenic
GGATGATGAACAATTCGAAC+AGG 0.474763 6_3:-48226399 Msa0952990:CDS
ATGTAAGGTTGGTGTGGAAG+TGG 0.475787 6_3:+48230297 None:intergenic
CATGTAGGTATTTGCAGACA+TGG 0.476328 6_3:-48226690 Msa0952990:intron
AGTTCTGTTGTCTCAATGGT+TGG 0.480356 6_3:-48226644 Msa0952990:CDS
GATATGTTAATTTGTTGGTA+TGG 0.485734 6_3:+48230136 None:intergenic
CTTCAAAGAGCTAGGTATGA+TGG 0.487411 6_3:-48226615 Msa0952990:CDS
ATATCTATCTACTGTAAAAG+AGG 0.491255 6_3:-48228077 Msa0952990:CDS
GGAAGTGGATGATGATGGAT+TGG 0.492976 6_3:+48230312 None:intergenic
CTTGCATGATAAGATGTTTG+AGG 0.498325 6_3:-48228054 Msa0952990:intron
TCTTGATACCTATGTCGCTT+GGG 0.501458 6_3:-48228549 Msa0952990:CDS
CAAACCTGGCCGGAAATCTC+GGG 0.502028 6_3:-48230232 Msa0952990:five_prime_UTR
TTCCAAACTCGAGGATATCT+GGG 0.512369 6_3:+48229984 None:intergenic
GCCTAATATATAGAGATTGT+AGG 0.517424 6_3:-48225949 Msa0952990:three_prime_UTR
AAACCCAATCCATTATTCTA+CGG 0.518266 6_3:-48230349 Msa0952990:five_prime_UTR
GGATGCCGATTTAAAATGCA+TGG 0.521969 6_3:-48226378 Msa0952990:CDS
CCTAATATATAGAGATTGTA+GGG 0.522530 6_3:-48225948 Msa0952990:three_prime_UTR
CTACATGCTGTTACGAGGTA+AGG 0.523242 6_3:-48226202 Msa0952990:three_prime_UTR
ATTGAGACAACAGAACTACT+AGG 0.527919 6_3:+48226650 None:intergenic
CTTCAATTCAGCATTGACAC+TGG 0.529177 6_3:+48226002 None:intergenic
AACAAAATGGATGCTAAGCA+AGG 0.531400 6_3:-48228243 Msa0952990:CDS
TCTCTATATATTAGGCATTG+AGG 0.541057 6_3:+48225956 None:intergenic
GACAATGTTCAACCAAATCC+AGG 0.541175 6_3:-48226464 Msa0952990:CDS
GCTCTTCTGCTTCGTCAACT+CGG 0.545541 6_3:+48228162 None:intergenic
ACTTGCTGCTGATGTAAGGT+TGG 0.552667 6_3:+48230286 None:intergenic
TTCTAGTTCCCAAGCGACAT+AGG 0.558781 6_3:+48228541 None:intergenic
CTGCTGATGTAAGGTTGGTG+TGG 0.558823 6_3:+48230291 None:intergenic
AATACGAGAAAGAATGGAAG+CGG 0.559112 6_3:-48228478 Msa0952990:CDS
GAAGTGGATGATGATGGATT+GGG 0.561316 6_3:+48230313 None:intergenic
ACTAGCAGATAAGTTTCTGT+TGG 0.562355 6_3:-48226272 Msa0952990:three_prime_UTR
AGAATGGAAGCGGATAATAC+AGG 0.564642 6_3:-48228468 Msa0952990:intron
TTATTAGTCTTCCAAACTCG+AGG 0.571818 6_3:+48229975 None:intergenic
GGAAATGTCTTCAAAGAGCT+AGG 0.573832 6_3:-48226623 Msa0952990:CDS
GGTGTGGAAGTGGATGATGA+TGG 0.594460 6_3:+48230307 None:intergenic
CGTGTAAGAATCAGGGTGCA+AGG 0.595586 6_3:-48226524 Msa0952990:CDS
TGGGAATATAGATACATCAA+AGG 0.602911 6_3:-48226551 Msa0952990:CDS
ATCAAATAAACGAAGCATTG+TGG 0.603795 6_3:-48230116 Msa0952990:intron
ACTACTTAATGCTTTAGCAG+AGG 0.604140 6_3:-48228189 Msa0952990:CDS
ATGTATCTATATTCCCATTG+CGG 0.604796 6_3:+48226557 None:intergenic
ATAAAGTCGATAGATACGTA+AGG 0.609744 6_3:-48226493 Msa0952990:CDS
AGGAAAGCGTGTAAGAATCA+GGG 0.610217 6_3:-48226531 Msa0952990:CDS
GAACATAACAACTTATATCG+TGG 0.614909 6_3:+48226035 None:intergenic
CTTACCTCGTAACAGCATGT+AGG 0.629695 6_3:+48226203 None:intergenic
TGGATGCTAAGCAAGGGTCA+AGG 0.634274 6_3:-48228236 Msa0952990:CDS
TATCTATATTCCCATTGCGG+TGG 0.638033 6_3:+48226560 None:intergenic
GACTCCTACATGCTGTTACG+AGG 0.640590 6_3:-48226207 Msa0952990:three_prime_UTR
ACAAAATGGATGCTAAGCAA+GGG 0.649924 6_3:-48228242 Msa0952990:CDS
ACCAAATCCAGGCTTAAGAG+AGG 0.654831 6_3:-48226453 Msa0952990:CDS
ACCTGGCCGGAAATCTCGGG+AGG 0.655058 6_3:-48230229 Msa0952990:five_prime_UTR
AGTGAAAGCATTACTGCTTG+TGG 0.656125 6_3:+48230187 None:intergenic
ATGTAAGCCTGACAATCTGG+TGG 0.662083 6_3:-48226138 Msa0952990:three_prime_UTR
AAAGCTATTAATGCAGTACA+CGG 0.681216 6_3:-48228132 Msa0952990:CDS
GAAAGCATTACTGCTTGTGG+CGG 0.705239 6_3:+48230190 None:intergenic
GTAGGTATTTGCAGACATGG+AGG 0.706718 6_3:-48226687 Msa0952990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTATTTTATTATA+AGG - chr6_3:48226103-48226122 Msa0952990:three_prime_UTR 0.0%
!! TTATATATATTCTGTAAATA+TGG - chr6_3:48228306-48228325 Msa0952990:intron 10.0%
!!! TATTTGATATGTTAATTTGT+TGG + chr6_3:48226008-48226027 None:intergenic 15.0%
!! TGGAAGACTAATAAAAAAAT+TGG - chr6_3:48226170-48226189 Msa0952990:three_prime_UTR 20.0%
!!! AAAAATTGGAACTATTTCTA+AGG - chr6_3:48226184-48226203 Msa0952990:three_prime_UTR 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG + chr6_3:48226391-48226410 None:intergenic 20.0%
!! ATGAACATAAAAAAATCACA+AGG + chr6_3:48227720-48227739 None:intergenic 20.0%
!!! AAATTACTTTCTGAAACTAT+AGG - chr6_3:48227869-48227888 Msa0952990:intron 20.0%
!! TTGTATATTCAAAGTTCAAA+TGG - chr6_3:48228217-48228236 Msa0952990:CDS 20.0%
!! TTGGATAAAAGAAAAGTTAT+TGG - chr6_3:48228250-48228269 Msa0952990:intron 20.0%
!! AAAGTTATTGGAGTAAAAAT+AGG - chr6_3:48228262-48228281 Msa0952990:intron 20.0%
!!! TTTTTTCAGTATATTTCCAA+TGG + chr6_3:48228442-48228461 None:intergenic 20.0%
!! TGAAAAAAAAAAAATGAGCA+AGG - chr6_3:48228454-48228473 Msa0952990:intron 20.0%
!! GAAAAAAAAAAAATGAGCAA+GGG - chr6_3:48228455-48228474 Msa0952990:intron 20.0%
!! AAAAATCAAATAAAGTGGTA+TGG - chr6_3:48228788-48228807 Msa0952990:intron 20.0%
!! ACAAACAAATGTTGTTAATA+TGG - chr6_3:48229390-48229409 Msa0952990:intron 20.0%
!!! TTTTTTCTTCCGTAGAATAA+TGG + chr6_3:48225799-48225818 None:intergenic 25.0%
!!! GATATGTTAATTTGTTGGTA+TGG + chr6_3:48226003-48226022 None:intergenic 25.0%
!!! TCCTTAGTTCTATAGTTTTT+TGG - chr6_3:48226054-48226073 Msa0952990:three_prime_UTR 25.0%
!!! CCTTAGTTCTATAGTTTTTT+GGG - chr6_3:48226055-48226074 Msa0952990:three_prime_UTR 25.0%
!! AGAACTAACACTTTTATCAA+AGG + chr6_3:48226597-48226616 None:intergenic 25.0%
!!! ATTGAATAATGCCATTTTCT+CGG + chr6_3:48226682-48226701 None:intergenic 25.0%
! ATTCCTTTGATTAAAAGAGT+CGG - chr6_3:48226756-48226775 Msa0952990:intron 25.0%
! TAGTATTTAACAATGTCAGA+TGG - chr6_3:48226888-48226907 Msa0952990:intron 25.0%
!!! GATACATTGACTTCTTTATA+TGG + chr6_3:48226925-48226944 None:intergenic 25.0%
! TGGGTTAAAGTCATAAAAAT+TGG - chr6_3:48227018-48227037 Msa0952990:intron 25.0%
! AATGTCAAAGAAGAAGTTTA+TGG - chr6_3:48227561-48227580 Msa0952990:intron 25.0%
! TCCTATAATTACAGTGAAAA+AGG - chr6_3:48227620-48227639 Msa0952990:intron 25.0%
!!! ACCTTTTTCACTGTAATTAT+AGG + chr6_3:48227624-48227643 None:intergenic 25.0%
! TGAAACTATAGGTAACAAAA+TGG - chr6_3:48227880-48227899 Msa0952990:intron 25.0%
! ATATCTATCTACTGTAAAAG+AGG - chr6_3:48228059-48228078 Msa0952990:CDS 25.0%
! TTCAAATGGCAAATATACAT+TGG - chr6_3:48228231-48228250 Msa0952990:CDS 25.0%
!!! TTTCATCAATTAGCTTGTAT+TGG + chr6_3:48228345-48228364 None:intergenic 25.0%
! AAATAACTGAATGAAAACAG+AGG - chr6_3:48228516-48228535 Msa0952990:CDS 25.0%
! GGCAAAAAAATCAAATAAAG+TGG - chr6_3:48228783-48228802 Msa0952990:intron 25.0%
! TCTCTTAAGAAGTAAACATA+CGG - chr6_3:48229164-48229183 Msa0952990:intron 25.0%
! ACAAATGTTGTTAATATGGA+TGG - chr6_3:48229394-48229413 Msa0952990:intron 25.0%
! AAATTGAGTAAATATTGAGC+CGG + chr6_3:48229424-48229443 None:intergenic 25.0%
! ATTTACTCAATTTCTCATGT+AGG - chr6_3:48229431-48229450 Msa0952990:intron 25.0%
!! TGAATCATCTGAAATTTGTT+TGG + chr6_3:48229787-48229806 None:intergenic 25.0%
! TCTCGTTATACTTCTAAATT+TGG + chr6_3:48229825-48229844 None:intergenic 25.0%
! TGATATCCTCATAAATGAAA+TGG + chr6_3:48230027-48230046 None:intergenic 25.0%
!! AAGTAGATATGTTACTTGAT+TGG + chr6_3:48230059-48230078 None:intergenic 25.0%
! CCTAATATATAGAGATTGTA+GGG - chr6_3:48230188-48230207 Msa0952990:exon 25.0%
AAACCCAATCCATTATTCTA+CGG - chr6_3:48225787-48225806 Msa0952990:three_prime_UTR 30.0%
!! ATCAAATAAACGAAGCATTG+TGG - chr6_3:48226020-48226039 Msa0952990:three_prime_UTR 30.0%
CCCAAAAAACTATAGAACTA+AGG + chr6_3:48226058-48226077 None:intergenic 30.0%
TAACAACAATCTATGAAGCA+TGG - chr6_3:48226313-48226332 Msa0952990:exon 30.0%
TCTCAAATTATTAGTGGTGT+CGG + chr6_3:48226385-48226404 None:intergenic 30.0%
TTGAATGTGATCACATTTGT+CGG - chr6_3:48226536-48226555 Msa0952990:CDS 30.0%
ATGTAAGTATTATGTCGTGT+TGG - chr6_3:48226700-48226719 Msa0952990:intron 30.0%
AACCTTAGTAGTTTATGCTT+TGG - chr6_3:48226791-48226810 Msa0952990:intron 30.0%
AACCAAAGCATAAACTACTA+AGG + chr6_3:48226796-48226815 None:intergenic 30.0%
GTTTCTTACTAGTTGTGATA+TGG - chr6_3:48226813-48226832 Msa0952990:intron 30.0%
AAAGAAGTCAATGTATCCTT+TGG - chr6_3:48226928-48226947 Msa0952990:intron 30.0%
GTTCATAGACAAATAGTGAA+GGG + chr6_3:48226972-48226991 None:intergenic 30.0%
AGTTCATAGACAAATAGTGA+AGG + chr6_3:48226973-48226992 None:intergenic 30.0%
!!! TTGTCTATGAACTAGTCTTT+TGG - chr6_3:48226980-48226999 Msa0952990:intron 30.0%
!!! TGTCTATGAACTAGTCTTTT+GGG - chr6_3:48226981-48227000 Msa0952990:intron 30.0%
!! TTTCGTTGATAGTTAGGTTA+CGG - chr6_3:48227044-48227063 Msa0952990:intron 30.0%
GTTACGGAAAAGTTACTTAT+TGG - chr6_3:48227060-48227079 Msa0952990:intron 30.0%
GCTGAATTAAGATACATTAC+CGG - chr6_3:48227082-48227101 Msa0952990:intron 30.0%
CTGAATTAAGATACATTACC+GGG - chr6_3:48227083-48227102 Msa0952990:intron 30.0%
AAAATAAAACACCATGGTGA+CGG + chr6_3:48227183-48227202 None:intergenic 30.0%
!!! CACCATGGTGTTTTATTTTA+TGG - chr6_3:48227184-48227203 Msa0952990:intron 30.0%
!!! CATGGTGTTTTATTTTATGG+CGG - chr6_3:48227187-48227206 Msa0952990:intron 30.0%
! TATTTTATGGCGGTTCAAAA+TGG - chr6_3:48227197-48227216 Msa0952990:intron 30.0%
!!! TGGTAGCTTTTTGAAATTTG+TGG + chr6_3:48227304-48227323 None:intergenic 30.0%
AATTTCAAAAAGCTACCACA+TGG - chr6_3:48227306-48227325 Msa0952990:intron 30.0%
GACTTTATACAGAAAACCTT+AGG - chr6_3:48227463-48227482 Msa0952990:intron 30.0%
GATGATTTATGTTCCTTCTT+TGG - chr6_3:48227817-48227836 Msa0952990:intron 30.0%
AAAGCTATTAATGCAGTACA+CGG - chr6_3:48228004-48228023 Msa0952990:intron 30.0%
! ATTTTATCGAAGAATCTACG+TGG + chr6_3:48228038-48228057 None:intergenic 30.0%
ATGAAACAAAGATGTCCATT+CGG - chr6_3:48228359-48228378 Msa0952990:intron 30.0%
!! TAGTCTTATTGGCTTCTTAA+TGG + chr6_3:48228412-48228431 None:intergenic 30.0%
!! ATGGAATACAGTAGTCTTAT+TGG + chr6_3:48228423-48228442 None:intergenic 30.0%
ATAAGACTACTGTATTCCAT+TGG - chr6_3:48228423-48228442 Msa0952990:intron 30.0%
AACCAAAATCATAGAGTAAG+AGG - chr6_3:48228488-48228507 Msa0952990:CDS 30.0%
AAAAGACTTGTCAAATACTC+AGG - chr6_3:48228574-48228593 Msa0952990:CDS 30.0%
TCAAATAAAGTGGTATGGAT+AGG - chr6_3:48228793-48228812 Msa0952990:intron 30.0%
TAGAGTCGTTATTTATAGAC+AGG - chr6_3:48228865-48228884 Msa0952990:intron 30.0%
CAGACTAAATTGAACACATA+AGG + chr6_3:48229015-48229034 None:intergenic 30.0%
!!! GGAGGATATTATGTTTTGAT+CGG - chr6_3:48229097-48229116 Msa0952990:intron 30.0%
TAAGAGAGAAAATCATCAAC+AGG + chr6_3:48229151-48229170 None:intergenic 30.0%
TGTTAATATGGATGGAATTC+CGG - chr6_3:48229402-48229421 Msa0952990:intron 30.0%
ATGTATCTATATTCCCATTG+CGG + chr6_3:48229582-48229601 None:intergenic 30.0%
TGGGAATATAGATACATCAA+AGG - chr6_3:48229585-48229604 Msa0952990:intron 30.0%
!! ACGTATCTATCGACTTTATT+AGG + chr6_3:48229642-48229661 None:intergenic 30.0%
ATAAAGTCGATAGATACGTA+AGG - chr6_3:48229643-48229662 Msa0952990:intron 30.0%
! GGTTTCCATGCATTTTAAAT+CGG + chr6_3:48229766-48229785 None:intergenic 30.0%
AGATGATTCATCTGAGTTTA+TGG - chr6_3:48229797-48229816 Msa0952990:intron 30.0%
TACACGCGAAATCATTATTT+CGG - chr6_3:48229901-48229920 Msa0952990:intron 30.0%
GAACATAACAACTTATATCG+TGG + chr6_3:48230104-48230123 None:intergenic 30.0%
CTGAATTGAAGTTGTGTATT+TGG - chr6_3:48230146-48230165 Msa0952990:CDS 30.0%
! TCTCTATATATTAGGCATTG+AGG + chr6_3:48230183-48230202 None:intergenic 30.0%
GCCTAATATATAGAGATTGT+AGG - chr6_3:48230187-48230206 Msa0952990:exon 30.0%
CCCTACAATCTCTATATATT+AGG + chr6_3:48230191-48230210 None:intergenic 30.0%
! AATGCATATAGGCTTTGATT+AGG - chr6_3:48230219-48230238 Msa0952990:five_prime_UTR 30.0%
! ATGCATATAGGCTTTGATTA+GGG - chr6_3:48230220-48230239 Msa0952990:five_prime_UTR 30.0%
GAAGTTCTGTGTTATATTGT+TGG - chr6_3:48230252-48230271 Msa0952990:five_prime_UTR 30.0%
!! CTTCCGTAGAATAATGGATT+GGG + chr6_3:48225793-48225812 None:intergenic 35.0%
!! TCTTCCGTAGAATAATGGAT+TGG + chr6_3:48225794-48225813 None:intergenic 35.0%
!! TTATTAGTCTTCCAAACTCG+AGG + chr6_3:48226164-48226183 None:intergenic 35.0%
AAACGAATATAGCGAATGCA+AGG + chr6_3:48226240-48226259 None:intergenic 35.0%
ATGAAGCATGGATACAAACA+CGG - chr6_3:48226325-48226344 Msa0952990:CDS 35.0%
TTATCGCTGTCTATGAATCA+CGG + chr6_3:48226495-48226514 None:intergenic 35.0%
CTGTTAGTTATCCGAGAAAA+TGG - chr6_3:48226668-48226687 Msa0952990:CDS 35.0%
!! TTTGGGTTAGACTCTTTTCA+TGG - chr6_3:48226998-48227017 Msa0952990:intron 35.0%
!! TTGGGTTAGACTCTTTTCAT+GGG - chr6_3:48226999-48227018 Msa0952990:intron 35.0%
!!! TGGTGTTTTCGTTGATAGTT+AGG - chr6_3:48227038-48227057 Msa0952990:intron 35.0%
ATTACCGGGTTGTCAAATAT+CGG - chr6_3:48227097-48227116 Msa0952990:intron 35.0%
!!! GTGGTTGATATTTTGACAAC+CGG - chr6_3:48227135-48227154 Msa0952990:intron 35.0%
CCTTCACAAATTTCTCATAC+CGG + chr6_3:48227157-48227176 None:intergenic 35.0%
CGCCATAAAATAAAACACCA+TGG + chr6_3:48227189-48227208 None:intergenic 35.0%
!! CTCTAGAATACGAGAAAGAA+TGG - chr6_3:48227652-48227671 Msa0952990:intron 35.0%
AATACGAGAAAGAATGGAAG+CGG - chr6_3:48227658-48227677 Msa0952990:intron 35.0%
AACAAAATGGATGCTAAGCA+AGG - chr6_3:48227893-48227912 Msa0952990:intron 35.0%
ACAAAATGGATGCTAAGCAA+GGG - chr6_3:48227894-48227913 Msa0952990:intron 35.0%
ACTACTTAATGCTTTAGCAG+AGG - chr6_3:48227947-48227966 Msa0952990:intron 35.0%
CTTGCATGATAAGATGTTTG+AGG - chr6_3:48228082-48228101 Msa0952990:CDS 35.0%
TCTTAATGGTGTTCAGCTAA+GGG + chr6_3:48228398-48228417 None:intergenic 35.0%
TTCTTAATGGTGTTCAGCTA+AGG + chr6_3:48228399-48228418 None:intergenic 35.0%
AAAAAAAATGAGCAAGGGAG+AGG - chr6_3:48228460-48228479 Msa0952990:intron 35.0%
! CTCCTCTTACTCTATGATTT+TGG + chr6_3:48228493-48228512 None:intergenic 35.0%
! CTTTTCAGTATAGATGCAAG+TGG - chr6_3:48228762-48228781 Msa0952990:intron 35.0%
! AGGATTCTGAGGAATCTATA+AGG - chr6_3:48228813-48228832 Msa0952990:intron 35.0%
! GGATTCTGAGGAATCTATAA+GGG - chr6_3:48228814-48228833 Msa0952990:intron 35.0%
GTTATTTATAGACAGGCCTA+GGG - chr6_3:48228872-48228891 Msa0952990:intron 35.0%
TTATTTATAGACAGGCCTAG+GGG - chr6_3:48228873-48228892 Msa0952990:intron 35.0%
ACAATCCAGTCCTATATTCT+AGG + chr6_3:48229203-48229222 None:intergenic 35.0%
TCTCTTGCAGTCAGTTATTT+GGG + chr6_3:48229319-48229338 None:intergenic 35.0%
ATCTCTTGCAGTCAGTTATT+TGG + chr6_3:48229320-48229339 None:intergenic 35.0%
GAGATAACTACAGTTATGTG+AGG - chr6_3:48229335-48229354 Msa0952990:intron 35.0%
ATTGAGACAACAGAACTACT+AGG + chr6_3:48229489-48229508 None:intergenic 35.0%
! TAGTAGTTCTGTTGTCTCAA+TGG - chr6_3:48229488-48229507 Msa0952990:intron 35.0%
AGAAGAGACTTCAGAGTTAA+TGG - chr6_3:48229716-48229735 Msa0952990:intron 35.0%
GAAGTATAACGAGAGAAAGA+TGG - chr6_3:48229831-48229850 Msa0952990:intron 35.0%
ACTAGCAGATAAGTTTCTGT+TGG - chr6_3:48229864-48229883 Msa0952990:intron 35.0%
TCGCGTGTAACTAACATTAA+TGG + chr6_3:48229890-48229909 None:intergenic 35.0%
AAAATGTAAGCCTGACAATC+TGG - chr6_3:48229995-48230014 Msa0952990:CDS 35.0%
TGGTAGCCATTTCATTTATG+AGG - chr6_3:48230018-48230037 Msa0952990:intron 35.0%
TCTACTTCAGATTCCTGAAA+TGG - chr6_3:48230072-48230091 Msa0952990:intron 35.0%
! GGGTGATTTTCAATGCATAT+AGG - chr6_3:48230208-48230227 Msa0952990:five_prime_UTR 35.0%
!! GAAGTGGATGATGATGGATT+GGG + chr6_3:48225826-48225845 None:intergenic 40.0%
!! AGTGAAAGCATTACTGCTTG+TGG + chr6_3:48225952-48225971 None:intergenic 40.0%
! AAGGTATTTGCTGCTGCAAA+AGG - chr6_3:48226122-48226141 Msa0952990:three_prime_UTR 40.0%
TTCCAAACTCGAGGATATCT+GGG + chr6_3:48226155-48226174 None:intergenic 40.0%
GTCAATGTCACTGTCGTATT+TGG + chr6_3:48226289-48226308 None:intergenic 40.0%
TTCAGTGTAATCACCTGTGT+CGG - chr6_3:48226416-48226435 Msa0952990:CDS 40.0%
CTGTCTATGAATCACGGATT+AGG + chr6_3:48226489-48226508 None:intergenic 40.0%
! GTATTATGTCGTGTTGGTGT+AGG - chr6_3:48226706-48226725 Msa0952990:intron 40.0%
!!! GCACCGACTCTTTTAATCAA+AGG + chr6_3:48226762-48226781 None:intergenic 40.0%
AAGTCAATGTATCCTTTGGC+AGG - chr6_3:48226932-48226951 Msa0952990:intron 40.0%
CCGGTATGAGAAATTTGTGA+AGG - chr6_3:48227154-48227173 Msa0952990:intron 40.0%
TTTATGGCGGTTCAAAATGG+TGG - chr6_3:48227200-48227219 Msa0952990:intron 40.0%
CGATTACAAATGGCAGAACA+TGG + chr6_3:48227241-48227260 None:intergenic 40.0%
! ACAGCGTTGTCGATTACAAA+TGG + chr6_3:48227251-48227270 None:intergenic 40.0%
!!! CTCTTAGTGGCTAGTCTTTT+GGG - chr6_3:48227404-48227423 Msa0952990:intron 40.0%
!! ACCTTAGGCTGATTTTTCCT+TGG - chr6_3:48227478-48227497 Msa0952990:intron 40.0%
TCCAAGGAAAAATCAGCCTA+AGG + chr6_3:48227482-48227501 None:intergenic 40.0%
CCAGAAATGCAAATCATCCA+AGG + chr6_3:48227498-48227517 None:intergenic 40.0%
! CCTTGGATGATTTGCATTTC+TGG - chr6_3:48227495-48227514 Msa0952990:intron 40.0%
! TCTTGATACCTATGTCGCTT+GGG - chr6_3:48227587-48227606 Msa0952990:intron 40.0%
AGAATGGAAGCGGATAATAC+AGG - chr6_3:48227668-48227687 Msa0952990:intron 40.0%
GTTCCTTCTTTGGATAGCTT+CGG - chr6_3:48227827-48227846 Msa0952990:intron 40.0%
TTCCTTCTTTGGATAGCTTC+GGG - chr6_3:48227828-48227847 Msa0952990:intron 40.0%
AAGGGTCAAGGAAAGACAAT+AGG - chr6_3:48227912-48227931 Msa0952990:intron 40.0%
! TTCAGCTAAGGGCTATTTCA+GGG + chr6_3:48228387-48228406 None:intergenic 40.0%
AACTGAATGAAAACAGAGGC+AGG - chr6_3:48228520-48228539 Msa0952990:CDS 40.0%
ACTGAATGAAAACAGAGGCA+GGG - chr6_3:48228521-48228540 Msa0952990:CDS 40.0%
GATAGGATATGAGCGAACAA+AGG - chr6_3:48228543-48228562 Msa0952990:CDS 40.0%
TCCTGAAGATTTCCTGGATA+TGG - chr6_3:48228599-48228618 Msa0952990:intron 40.0%
TCCATATCCAGGAAATCTTC+AGG + chr6_3:48228603-48228622 None:intergenic 40.0%
CGTTATTTATAGACAGGCCT+AGG - chr6_3:48228871-48228890 Msa0952990:intron 40.0%
CTAACAATTAAGTCACCCCT+AGG + chr6_3:48228891-48228910 None:intergenic 40.0%
AAGGAGAGGATAAGGGTTTA+GGG - chr6_3:48229076-48229095 Msa0952990:intron 40.0%
!! TTTGATCGGTAGCTTTAGTG+TGG - chr6_3:48229111-48229130 Msa0952990:intron 40.0%
TGTCCTTGGTCCTAGAATAT+AGG - chr6_3:48229190-48229209 Msa0952990:intron 40.0%
!! AGTCCTATATTCTAGGACCA+AGG + chr6_3:48229196-48229215 None:intergenic 40.0%
TTGGTCCTAGAATATAGGAC+TGG - chr6_3:48229195-48229214 Msa0952990:intron 40.0%
GAATATAGGACTGGATTGTG+CGG - chr6_3:48229204-48229223 Msa0952990:intron 40.0%
CATGTAGGTATTTGCAGACA+TGG - chr6_3:48229446-48229465 Msa0952990:intron 40.0%
AGTTCTGTTGTCTCAATGGT+TGG - chr6_3:48229492-48229511 Msa0952990:intron 40.0%
GGAAATGTCTTCAAAGAGCT+AGG - chr6_3:48229513-48229532 Msa0952990:intron 40.0%
CTTCAAAGAGCTAGGTATGA+TGG - chr6_3:48229521-48229540 Msa0952990:intron 40.0%
AAAAATATCCACCACCGCAA+TGG - chr6_3:48229565-48229584 Msa0952990:intron 40.0%
AAAATATCCACCACCGCAAT+GGG - chr6_3:48229566-48229585 Msa0952990:intron 40.0%
TATCTATATTCCCATTGCGG+TGG + chr6_3:48229579-48229598 None:intergenic 40.0%
! AAGGAAAGCGTGTAAGAATC+AGG - chr6_3:48229604-48229623 Msa0952990:intron 40.0%
! AGGAAAGCGTGTAAGAATCA+GGG - chr6_3:48229605-48229624 Msa0952990:intron 40.0%
GACAATGTTCAACCAAATCC+AGG - chr6_3:48229672-48229691 Msa0952990:intron 40.0%
GGATGATGAACAATTCGAAC+AGG - chr6_3:48229737-48229756 Msa0952990:intron 40.0%
!! GGATGCCGATTTAAAATGCA+TGG - chr6_3:48229758-48229777 Msa0952990:intron 40.0%
AGGTAAGGTGAAGACACTTT+AGG - chr6_3:48229949-48229968 Msa0952990:CDS 40.0%
!! CTTCAATTCAGCATTGACAC+TGG + chr6_3:48230137-48230156 None:intergenic 40.0%
!! GGAAGTGGATGATGATGGAT+TGG + chr6_3:48225827-48225846 None:intergenic 45.0%
!! ATGTAAGGTTGGTGTGGAAG+TGG + chr6_3:48225842-48225861 None:intergenic 45.0%
! ACTTGCTGCTGATGTAAGGT+TGG + chr6_3:48225853-48225872 None:intergenic 45.0%
!! TTCGACTTGCTGCTGATGTA+AGG + chr6_3:48225857-48225876 None:intergenic 45.0%
!! GAAAGCATTACTGCTTGTGG+CGG + chr6_3:48225949-48225968 None:intergenic 45.0%
CTTCCAAACTCGAGGATATC+TGG + chr6_3:48226156-48226175 None:intergenic 45.0%
TGTCACATCTGTGTTGTGTC+TGG + chr6_3:48226354-48226373 None:intergenic 45.0%
!! CACATTTGTCGGTGTTGTGT+TGG - chr6_3:48226547-48226566 Msa0952990:CDS 45.0%
ATGGCCGATATTTGACAACC+CGG + chr6_3:48227104-48227123 None:intergenic 45.0%
TTGTCAAATATCGGCCATGC+TGG - chr6_3:48227106-48227125 Msa0952990:intron 45.0%
CTCTTTCAACAGTGACCATG+TGG + chr6_3:48227324-48227343 None:intergenic 45.0%
CAATGTTATGAGTTCCACGC+CGG - chr6_3:48227381-48227400 Msa0952990:intron 45.0%
! AAAGACTAGCCACTAAGAGC+CGG + chr6_3:48227403-48227422 None:intergenic 45.0%
!!! GCTCTTAGTGGCTAGTCTTT+TGG - chr6_3:48227403-48227422 Msa0952990:intron 45.0%
CTCTTGATACCTATGTCGCT+TGG - chr6_3:48227586-48227605 Msa0952990:intron 45.0%
!! TTCTAGTTCCCAAGCGACAT+AGG + chr6_3:48227598-48227617 None:intergenic 45.0%
TCCTTCTTTGGATAGCTTCG+GGG - chr6_3:48227829-48227848 Msa0952990:intron 45.0%
TTGACGAAGCAGAAGAGCTT+TGG - chr6_3:48227979-48227998 Msa0952990:intron 45.0%
! TCAGCTAAGGGCTATTTCAG+GGG + chr6_3:48228386-48228405 None:intergenic 45.0%
! GTTCAGCTAAGGGCTATTTC+AGG + chr6_3:48228388-48228407 None:intergenic 45.0%
ATGAAAACAGAGGCAGGGAT+AGG - chr6_3:48228526-48228545 Msa0952990:CDS 45.0%
CAGGATTCCTGAAGATTTCC+TGG - chr6_3:48228593-48228612 Msa0952990:CDS 45.0%
AGATTTCCTGGATATGGAGC+AGG - chr6_3:48228605-48228624 Msa0952990:intron 45.0%
GTGGTATGGATAGGATTCTG+AGG - chr6_3:48228802-48228821 Msa0952990:intron 45.0%
! CAAACACCGAGTTTTTCTCG+AGG - chr6_3:48229042-48229061 Msa0952990:intron 45.0%
GGACTTCCTCGAGAAAAACT+CGG + chr6_3:48229051-48229070 None:intergenic 45.0%
TCCAAACCAAGGAGAGGATA+AGG - chr6_3:48229068-48229087 Msa0952990:intron 45.0%
CCAAACCAAGGAGAGGATAA+GGG - chr6_3:48229069-48229088 Msa0952990:intron 45.0%
CTAAACCCTTATCCTCTCCT+TGG + chr6_3:48229077-48229096 None:intergenic 45.0%
CAAGGAGAGGATAAGGGTTT+AGG - chr6_3:48229075-48229094 Msa0952990:intron 45.0%
TAAACATACGGCTCTGTCCT+TGG - chr6_3:48229176-48229195 Msa0952990:intron 45.0%
GTAGGTATTTGCAGACATGG+AGG - chr6_3:48229449-48229468 Msa0952990:intron 45.0%
ACCAAATCCAGGCTTAAGAG+AGG - chr6_3:48229683-48229702 Msa0952990:intron 45.0%
TCCTCTCTTAAGCCTGGATT+TGG + chr6_3:48229687-48229706 None:intergenic 45.0%
CTATCTTCCTCTCTTAAGCC+TGG + chr6_3:48229693-48229712 None:intergenic 45.0%
CTTACCTCGTAACAGCATGT+AGG + chr6_3:48229936-48229955 None:intergenic 45.0%
CTACATGCTGTTACGAGGTA+AGG - chr6_3:48229934-48229953 Msa0952990:CDS 45.0%
ATGTAAGCCTGACAATCTGG+TGG - chr6_3:48229998-48230017 Msa0952990:CDS 45.0%
GGTGTGGAAGTGGATGATGA+TGG + chr6_3:48225832-48225851 None:intergenic 50.0%
!! CTGCTGATGTAAGGTTGGTG+TGG + chr6_3:48225848-48225867 None:intergenic 50.0%
CTAACTCCTCCCGAGATTTC+CGG + chr6_3:48225916-48225935 None:intergenic 50.0%
ACTCGAGGATATCTGGGTCT+TGG + chr6_3:48226149-48226168 None:intergenic 50.0%
GACCCAGATATCCTCGAGTT+TGG - chr6_3:48226150-48226169 Msa0952990:three_prime_UTR 50.0%
TGTATCCTTTGGCAGGACCA+TGG - chr6_3:48226939-48226958 Msa0952990:intron 50.0%
TGAAAGAGTGAAAGCCGTCG+TGG - chr6_3:48227336-48227355 Msa0952990:intron 50.0%
! TTTAGAGCCGACATCCACGA+CGG + chr6_3:48227353-48227372 None:intergenic 50.0%
!! GTGGATGTCGGCTCTAAAAG+AGG - chr6_3:48227355-48227374 Msa0952990:intron 50.0%
!! GATGTCGGCTCTAAAAGAGG+TGG - chr6_3:48227358-48227377 Msa0952990:intron 50.0%
!!! TAGTGGCTAGTCTTTTGGGC+TGG - chr6_3:48227408-48227427 Msa0952990:intron 50.0%
! TTGGGCTGGACTCTCTTCAT+CGG - chr6_3:48227422-48227441 Msa0952990:intron 50.0%
TGGATGCTAAGCAAGGGTCA+AGG - chr6_3:48227900-48227919 Msa0952990:intron 50.0%
GCTCTTCTGCTTCGTCAACT+CGG + chr6_3:48227977-48227996 None:intergenic 50.0%
TACAACTGAAGAGTCGCGCT+CGG + chr6_3:48228702-48228721 None:intergenic 50.0%
TCTCGAGGAAGTCCAAACCA+AGG - chr6_3:48229057-48229076 Msa0952990:intron 50.0%
AGGAAGTCCAAACCAAGGAG+AGG - chr6_3:48229062-48229081 Msa0952990:intron 50.0%
CCCTTATCCTCTCCTTGGTT+TGG + chr6_3:48229072-48229091 None:intergenic 50.0%
GAGAGGATAAGGGTTTAGGG+AGG - chr6_3:48229079-48229098 Msa0952990:intron 50.0%
! ACTGGATTGTGCGGATTGTG+CGG - chr6_3:48229213-48229232 Msa0952990:intron 50.0%
CTATATTCCCATTGCGGTGG+TGG + chr6_3:48229576-48229595 None:intergenic 50.0%
CGTGTAAGAATCAGGGTGCA+AGG - chr6_3:48229612-48229631 Msa0952990:intron 50.0%
GACTCCTACATGCTGTTACG+AGG - chr6_3:48229929-48229948 Msa0952990:intron 50.0%
ATGGCTACCACCAGATTGTC+AGG + chr6_3:48230008-48230027 None:intergenic 50.0%
ATCGTGGACTTCGCCATTTC+AGG + chr6_3:48230088-48230107 None:intergenic 50.0%
!!! GCCAGGTTTGGGTTTTTGGC+GGG + chr6_3:48225894-48225913 None:intergenic 55.0%
!! GGCCAGGTTTGGGTTTTTGG+CGG + chr6_3:48225895-48225914 None:intergenic 55.0%
GCCAAAAACCCAAACCTGGC+CGG - chr6_3:48225894-48225913 Msa0952990:three_prime_UTR 55.0%
!! TCCGGCCAGGTTTGGGTTTT+TGG + chr6_3:48225898-48225917 None:intergenic 55.0%
CGAGATTTCCGGCCAGGTTT+GGG + chr6_3:48225905-48225924 None:intergenic 55.0%
CCAAACCTGGCCGGAAATCT+CGG - chr6_3:48225903-48225922 Msa0952990:three_prime_UTR 55.0%
CAAACCTGGCCGGAAATCTC+GGG - chr6_3:48225904-48225923 Msa0952990:three_prime_UTR 55.0%
AGCATTACTGCTTGTGGCGG+TGG + chr6_3:48225946-48225965 None:intergenic 55.0%
CTCTGACACAACACCGACAC+AGG + chr6_3:48226432-48226451 None:intergenic 55.0%
!! CTGTGTCGGTGTTGTGTCAG+AGG - chr6_3:48226430-48226449 Msa0952990:CDS 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + chr6_3:48226473-48226492 None:intergenic 55.0%
!! ATCACGGATTAGGCGTGTCC+TGG + chr6_3:48226479-48226498 None:intergenic 55.0%
ATCCTTTGGCAGGACCATGG+CGG - chr6_3:48226942-48226961 Msa0952990:intron 55.0%
TAGTGAAGGGATGTCCGCCA+TGG + chr6_3:48226959-48226978 None:intergenic 55.0%
ATATCGGCCATGCTGGATCG+CGG - chr6_3:48227113-48227132 Msa0952990:intron 55.0%
TGTGAAGGATGCCGTCACCA+TGG - chr6_3:48227169-48227188 Msa0952990:intron 55.0%
GTGAAAGCCGTCGTGGATGT+CGG - chr6_3:48227343-48227362 Msa0952990:intron 55.0%
GCCCCGAAGCTATCCAAAGA+AGG + chr6_3:48227833-48227852 None:intergenic 55.0%
! GGCTATTTCAGGGGACCGAA+TGG + chr6_3:48228377-48228396 None:intergenic 55.0%
TCACGTCCTGCTCCATATCC+AGG + chr6_3:48228614-48228633 None:intergenic 55.0%
GATATGGAGCAGGACGTGAG+TGG - chr6_3:48228615-48228634 Msa0952990:intron 55.0%
! CTGGATTGTGCGGATTGTGC+GGG - chr6_3:48229214-48229233 Msa0952990:intron 55.0%
GCCCGCCAAAAACCCAAACC+TGG - chr6_3:48225890-48225909 Msa0952990:three_prime_UTR 60.0%
CCGAGATTTCCGGCCAGGTT+TGG + chr6_3:48225906-48225925 None:intergenic 60.0%
! TCCTGGTGTCGGACACACGT+CGG + chr6_3:48226462-48226481 None:intergenic 60.0%
TCAACCACCGCGATCCAGCA+TGG + chr6_3:48227123-48227142 None:intergenic 60.0%
!! AGTTCCACGCCGGCTCTTAG+TGG - chr6_3:48227391-48227410 Msa0952990:intron 60.0%
GGAGCAGGACGTGAGTGGAA+TGG - chr6_3:48228620-48228639 Msa0952990:intron 60.0%
GCAGGACGTGAGTGGAATGG+AGG - chr6_3:48228623-48228642 Msa0952990:intron 60.0%
ACCTGGCCGGAAATCTCGGG+AGG - chr6_3:48225907-48225926 Msa0952990:three_prime_UTR 65.0%
TCCTCCCGAGATTTCCGGCC+AGG + chr6_3:48225911-48225930 None:intergenic 65.0%
CTGCTTGTGGCGGTGGCTGA+TGG + chr6_3:48225939-48225958 None:intergenic 65.0%
ACCGACGTGTGTCCGACACC+AGG - chr6_3:48226458-48226477 Msa0952990:CDS 65.0%
GTCCGCCATGGTCCTGCCAA+AGG + chr6_3:48226947-48226966 None:intergenic 65.0%
CTAGCCACTAAGAGCCGGCG+TGG + chr6_3:48227398-48227417 None:intergenic 65.0%
TCGGCCATGCTGGATCGCGG+TGG - chr6_3:48227116-48227135 Msa0952990:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 48225784 48230374 48225784 ID=Msa0952990;Name=Msa0952990
chr6_3 mRNA 48225784 48230374 48225784 ID=Msa0952990-mRNA-1;Parent=Msa0952990;Name=Msa0952990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=177|1|1|1|1|1|5|535|308
chr6_3 exon 48225784 48226705 48225784 ID=Msa0952990-mRNA-1:exon:10644;Parent=Msa0952990-mRNA-1
chr6_3 exon 48228055 48228267 48228055 ID=Msa0952990-mRNA-1:exon:10643;Parent=Msa0952990-mRNA-1
chr6_3 exon 48228469 48228612 48228469 ID=Msa0952990-mRNA-1:exon:10642;Parent=Msa0952990-mRNA-1
chr6_3 exon 48229932 48230033 48229932 ID=Msa0952990-mRNA-1:exon:10641;Parent=Msa0952990-mRNA-1
chr6_3 exon 48230117 48230374 48230117 ID=Msa0952990-mRNA-1:exon:10640;Parent=Msa0952990-mRNA-1
chr6_3 five_prime_UTR 48230198 48230374 48230198 ID=Msa0952990-mRNA-1:five_prime_utr;Parent=Msa0952990-mRNA-1
chr6_3 CDS 48230117 48230197 48230117 ID=Msa0952990-mRNA-1:cds;Parent=Msa0952990-mRNA-1
chr6_3 CDS 48229932 48230033 48229932 ID=Msa0952990-mRNA-1:cds;Parent=Msa0952990-mRNA-1
chr6_3 CDS 48228469 48228612 48228469 ID=Msa0952990-mRNA-1:cds;Parent=Msa0952990-mRNA-1
chr6_3 CDS 48228055 48228267 48228055 ID=Msa0952990-mRNA-1:cds;Parent=Msa0952990-mRNA-1
chr6_3 CDS 48226319 48226705 48226319 ID=Msa0952990-mRNA-1:cds;Parent=Msa0952990-mRNA-1
chr6_3 three_prime_UTR 48225784 48226318 48225784 ID=Msa0952990-mRNA-1:three_prime_utr;Parent=Msa0952990-mRNA-1
Gene Sequence

>Msa0952990

ATGCTTTCACTCACTAATTCGCTTCTACTTATTGCTAAACCATACCAACAAATTAACATATCAAATAAACGAAGCATTGTGGTATTTGCTGCTGCAAAAGGTCCAAGACCCAGATATCCTCGAGTTTGGAAGACTAATAAAAAAATTGGAACTATTTCTAAGGCTGCTAAGCTTGTTCAATCTATTAAAGAACTTTCAAATGTCAAAGAAGAAGTTTATGGAGCTCTTGATACCTATGTCGCTTGGGAACTAGAATTTCCTATAATTACAGTGAAAAAGGTACTCAAGACTCTAGAATACGAGAAAGAATGGAAGCGGATAATACAGGTAACAAAATGGATGCTAAGCAAGGGTCAAGGAAAGACAATAGGAAGCTATTTTACACTACTTAATGCTTTAGCAGAGGATGACCGAGTTGACGAAGCAGAAGAGCTTTGGACAAAGCTATTAATGCAGTACACGGAAAGCTTGCCACGTAGATTCTTCGATAAAATGATATCTATCTACTGTAAAAGAGGCTTGCATGATAAGATGTTTGAGGTATTTGCAGACATGGAGGAGCTTAGTGTTAAACCTAGTAGTTCTGTTGTCTCAATGGTTGGAAATGTCTTCAAAGAGCTAGGTATGATGGATAAATACGAGAAGTTACATCAAAAATATCCACCACCGCAATGGGAATATAGATACATCAAAGGAAAGCGTGTAAGAATCAGGGTGCAAGGTCAGCCTAATAAAGTCGATAGATACGTAAGGAAGCATGACAATGTTCAACCAAATCCAGGCTTAAGAGAGGAAGATAGTTCAGAAGAGACTTCAGAGTTAATGGATGATGAACAATTCGAACAGGATGCCGATTTAAAATGCATGGAAACCAAACAAATTTCAGATGATTCATCTGAGTTTATGGAACCAAATTTAGAAGTATAA

Protein sequence

>Msa0952990

MLSLTNSLLLIAKPYQQINISNKRSIVVFAAAKGPRPRYPRVWKTNKKIGTISKAAKLVQSIKELSNVKEEVYGALDTYVAWELEFPIITVKKVLKTLEYEKEWKRIIQVTKWMLSKGQGKTIGSYFTLLNALAEDDRVDEAEELWTKLLMQYTESLPRRFFDKMISIYCKRGLHDKMFEVFADMEELSVKPSSSVVSMVGNVFKELGMMDKYEKLHQKYPPPQWEYRYIKGKRVRIRVQGQPNKVDRYVRKHDNVQPNPGLREEDSSEETSELMDDEQFEQDADLKCMETKQISDDSSEFMEPNLEV*