AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0862240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862240 MtrunA17_Chr5g0443561 95.975 323 13 0 1 323 1 323 0.0 635
Msa0862240 MtrunA17_Chr7g0256571 68.956 364 66 3 7 323 6 369 6.96e-178 496
Msa0862240 MtrunA17_Chr7g0256581 67.857 364 70 3 7 323 6 369 1.56e-174 488
Msa0862240 MtrunA17_Chr7g0256561 73.313 326 83 2 1 323 11 335 5.56e-174 485
Msa0862240 MtrunA17_Chr2g0322241 48.295 352 128 7 23 323 47 395 1.22e-103 309
Msa0862240 MtrunA17_Chr4g0025341 46.154 351 136 7 23 323 44 391 8.09e-97 291
Msa0862240 MtrunA17_Chr2g0329531 45.570 316 121 5 48 313 82 396 1.48e-84 260
Msa0862240 MtrunA17_Chr7g0256601 41.867 332 139 5 45 322 85 416 3.80e-84 260
Msa0862240 MtrunA17_Chr7g0256591 40.634 347 152 6 30 322 39 385 5.10e-84 259
Msa0862240 MtrunA17_Chr4g0062001 39.067 343 177 4 1 321 2 334 6.24e-77 239
Msa0862240 MtrunA17_Chr8g0376581 40.541 296 156 3 47 322 36 331 1.27e-72 227
Msa0862240 MtrunA17_Chr4g0062031 41.522 289 156 5 47 322 37 325 1.08e-71 225
Msa0862240 MtrunA17_Chr2g0307721 44.631 298 144 4 38 314 37 334 7.37e-68 226
Msa0862240 MtrunA17_Chr2g0307721 40.469 341 175 8 5 320 455 792 3.63e-62 211
Msa0862240 MtrunA17_Chr2g0307721 44.304 79 44 0 100 178 343 421 1.50e-13 71.6
Msa0862240 MtrunA17_Chr4g0062021 39.932 293 154 4 47 317 50 342 5.96e-67 213
Msa0862240 MtrunA17_Chr4g0020271 37.705 183 93 3 153 315 2 183 4.49e-34 124
Msa0862240 MtrunA17_Chr8g0370791 34.934 229 128 5 48 276 78 285 3.04e-32 123
Msa0862240 MtrunA17_Chr4g0062051 45.185 135 71 1 47 178 41 175 1.42e-31 116
Msa0862240 MtrunA17_Chr8g0370761 34.498 229 129 5 48 276 78 285 3.50e-31 120
Msa0862240 MtrunA17_Chr4g0061871 43.810 105 59 0 178 282 18 122 1.22e-24 97.1
Msa0862240 MtrunA17_Chr2g0300841 29.355 310 165 9 58 323 58 357 1.26e-23 99.8
Msa0862240 MtrunA17_Chr2g0300851 28.866 291 156 8 73 323 70 349 1.81e-22 96.3
Msa0862240 MtrunA17_Chr2g0300861 29.412 306 161 10 58 319 70 364 1.17e-20 91.3
Msa0862240 MtrunA17_Chr8g0370771 33.333 135 89 1 142 276 17 150 3.10e-20 87.8
Msa0862240 MtrunA17_Chr4g0062061 38.462 117 61 2 217 322 4 120 3.81e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862240 AT3G57030.1 55.942 345 109 2 22 323 30 374 1.36e-135 390
Msa0862240 AT5G22020.3 47.507 341 128 5 31 323 58 395 3.41e-99 298
Msa0862240 AT5G22020.1 47.507 341 128 5 31 323 58 395 3.41e-99 298
Msa0862240 AT5G22020.2 47.507 341 128 5 31 323 58 395 3.41e-99 298
Msa0862240 AT1G08470.1 45.714 350 136 7 24 323 44 389 1.54e-97 293
Msa0862240 AT3G57010.1 44.475 362 148 8 7 320 11 367 8.72e-89 271
Msa0862240 AT2G41290.1 44.444 369 149 9 10 323 9 376 3.76e-88 269
Msa0862240 AT2G41300.1 46.278 309 120 4 55 320 85 390 2.73e-87 267
Msa0862240 AT3G57020.1 43.503 354 150 7 13 320 17 366 1.87e-86 265
Msa0862240 AT3G57020.2 41.808 354 142 7 13 320 17 352 2.37e-79 246
Msa0862240 AT3G59530.3 50.206 243 112 3 39 273 75 316 1.66e-76 240
Msa0862240 AT3G59530.2 50.206 243 112 3 39 273 75 316 1.66e-76 240
Msa0862240 AT3G59530.1 50.206 243 112 3 39 273 75 316 1.66e-76 240
Msa0862240 AT1G74020.1 40.893 291 156 5 48 323 38 327 1.19e-64 207
Msa0862240 AT1G74010.1 39.932 293 155 7 48 323 37 325 5.09e-61 197
Msa0862240 AT1G74000.1 38.435 294 161 7 47 323 39 329 3.48e-59 193
Msa0862240 AT3G51430.1 31.783 258 156 6 24 280 45 283 1.26e-29 116
Msa0862240 AT3G51430.2 30.435 276 171 7 24 297 45 301 1.64e-29 116
Msa0862240 AT3G51440.1 32.031 256 151 7 49 300 70 306 3.45e-29 115
Msa0862240 AT3G51450.1 31.330 233 140 6 49 280 70 283 1.98e-27 110
Msa0862240 AT3G51420.1 30.973 226 136 6 49 273 70 276 7.14e-26 106

Find 96 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATACAATATACTCTTTC+TGG 0.161342 5_4:+61873293 Msa0862240:exon
ATTCTTCGACTTTGGCTTCA+TGG 0.205561 5_4:+61873024 Msa0862240:CDS
TAGGTGAAACTTCGACTTTC+CGG 0.217649 5_4:+61873001 Msa0862240:CDS
GAAATTCAGATGGGCAGTTT+TGG 0.258450 5_4:+61873109 Msa0862240:CDS
CTTCTTAGCGGAGACAAAAC+TGG 0.298940 5_4:+61872871 Msa0862240:CDS
TCAATGACAAAATATCTTAA+TGG 0.309301 5_4:+61873722 Msa0862240:three_prime_UTR
CTTTCCGGATTCTTCGACTT+TGG 0.322440 5_4:+61873016 Msa0862240:CDS
CTGTCCTTTGATCCAGAAAT+AGG 0.328746 5_4:-61869635 None:intergenic
ATATTGACTTGGCCAGCATT+AGG 0.334062 5_4:-61873048 None:intergenic
AGTGTTGAACTTACCTTCTC+TGG 0.358880 5_4:-61872504 None:intergenic
TCCATTCGCACCAGAGTTAG+AGG 0.369138 5_4:+61872264 Msa0862240:CDS
CAGGTTATCCGGACAATATA+AGG 0.377879 5_4:+61873085 Msa0862240:CDS
TGCTGTTCTTCCAGGTTATC+CGG 0.385672 5_4:+61873074 Msa0862240:CDS
TATTGACTTGGCCAGCATTA+GGG 0.387491 5_4:-61873047 None:intergenic
CAAAATATCTTAATGGAGTT+CGG 0.415781 5_4:+61873729 Msa0862240:three_prime_UTR
CTCCATGTCACCGGAGCCGT+TGG 0.420609 5_4:+61869677 Msa0862240:CDS
TGGCTTCATGGCCCTAATGC+TGG 0.424712 5_4:+61873036 Msa0862240:CDS
GCTATAAAGTTGAGTGATGA+AGG 0.432202 5_4:+61873150 Msa0862240:CDS
TTGCTGTCACTAGTTCCAAT+AGG 0.439270 5_4:+61869804 Msa0862240:CDS
CCATCCGCCACGCCCGTGTA+TGG 0.441523 5_4:-61869737 None:intergenic
CTTATATTGTCCGGATAACC+TGG 0.443834 5_4:-61873084 None:intergenic
CCAGAGTTAGAGGATATTTG+TGG 0.459327 5_4:+61872274 Msa0862240:CDS
TTGCTTAAACAAACACCATT+GGG 0.459445 5_4:-61872958 None:intergenic
GAATTTCTCCTTATATTGTC+CGG 0.460285 5_4:-61873093 None:intergenic
ACTCTCCGGCCCAACGGCTC+CGG 0.460954 5_4:-61869687 None:intergenic
TACATTGTTGATGCCTACCT+TGG 0.478042 5_4:+61872340 Msa0862240:CDS
GAAGTGAATGTCTTATTAAG+TGG 0.483610 5_4:+61872925 Msa0862240:CDS
TCCTCTAACTCTGGTGCGAA+TGG 0.487071 5_4:-61872265 None:intergenic
GAAGCCAAAGTCGAAGAATC+CGG 0.487945 5_4:-61873020 None:intergenic
AAACTATAAATACCAACATA+AGG 0.492238 5_4:-61873267 None:intergenic
GCCCAACGGCTCCGGTGACA+TGG 0.497514 5_4:-61869679 None:intergenic
CATTTATATTTAAATAATTG+TGG 0.500843 5_4:+61873569 Msa0862240:three_prime_UTR
GTTGCTTAAACAAACACCAT+TGG 0.501197 5_4:-61872959 None:intergenic
TGGATCAAAGGACAGTCTCC+AGG 0.505663 5_4:+61869643 Msa0862240:CDS
CCACAAATATCCTCTAACTC+TGG 0.512177 5_4:-61872274 None:intergenic
TGGTTACAATTGAGATCAGA+TGG 0.513478 5_4:+61873430 Msa0862240:three_prime_UTR
CTGCAGGTCCTACTACGTTA+AGG 0.516853 5_4:-61872363 None:intergenic
GACGGTTTATTTCTTCTAGT+AGG 0.518311 5_4:+61872982 Msa0862240:CDS
TAATGGAGTTCGGAAAATGT+AGG 0.522107 5_4:+61873739 Msa0862240:three_prime_UTR
GATATTTGTGGGAGGCCACT+AGG 0.524182 5_4:+61872286 Msa0862240:CDS
TCCATGTCACCGGAGCCGTT+GGG 0.527613 5_4:+61869678 Msa0862240:CDS
AATAAAAGAATCCCCTGGCA+TGG 0.533869 5_4:-61873466 None:intergenic
TGTCACCGGAGCCGTTGGGC+CGG 0.534102 5_4:+61869682 Msa0862240:CDS
GGTTCCTATTTCTGGATCAA+AGG 0.539472 5_4:+61869631 Msa0862240:CDS
CTTAACGTAGTAGGACCTGC+AGG 0.540126 5_4:+61872364 Msa0862240:CDS
TTATCAAATCTTAGTCCTAG+TGG 0.547763 5_4:-61872301 None:intergenic
CGCTTCACTGACATATCTCA+TGG 0.548468 5_4:-61873202 None:intergenic
TACCTTGGCCTTAACGTAGT+AGG 0.551747 5_4:+61872355 Msa0862240:CDS
ATGTCATTGTTGAAGCGAAA+GGG 0.551830 5_4:-61872427 None:intergenic
ACACGGGCGTGGCGGATGGT+CGG 0.554660 5_4:+61869741 Msa0862240:CDS
CAGAGTTAGAGGATATTTGT+GGG 0.555272 5_4:+61872275 Msa0862240:CDS
AGGGGAAATATTAGAAATCG+TGG 0.558229 5_4:+61873170 Msa0862240:CDS
AGTATTATACTACCCATGCC+AGG 0.558902 5_4:+61873453 Msa0862240:three_prime_UTR
ATAAAAGAATCCCCTGGCAT+GGG 0.561795 5_4:-61873465 None:intergenic
CATGGAGTAACCGATCAGCC+TGG 0.564584 5_4:-61869661 None:intergenic
AAGTGAATGTCTTATTAAGT+GGG 0.566171 5_4:+61872926 Msa0862240:CDS
TTCTTAGCGGAGACAAAACT+GGG 0.567664 5_4:+61872872 Msa0862240:CDS
AGGACAGTCTCCAGGCTGAT+CGG 0.569322 5_4:+61869651 Msa0862240:CDS
CTTTCGCTTCAACAATGACA+TGG 0.569375 5_4:+61872429 Msa0862240:CDS
AGTGGGCTTAATTATCCCAA+TGG 0.572203 5_4:+61872943 Msa0862240:CDS
GTAATGGGGAGTAATTATGT+TGG 0.576359 5_4:+61873506 Msa0862240:three_prime_UTR
CCATACACGGGCGTGGCGGA+TGG 0.577467 5_4:+61869737 Msa0862240:CDS
CAAGCACAGTCTACCAGAGA+AGG 0.581120 5_4:+61872491 Msa0862240:CDS
AAGTATGAAGGGGAGGAACG+TGG 0.583448 5_4:+61869770 Msa0862240:CDS
TATAAAGTTGAGTGATGAAG+GGG 0.593424 5_4:+61873152 Msa0862240:CDS
GTCCTACTACGTTAAGGCCA+AGG 0.595729 5_4:-61872357 None:intergenic
CGAAGGACCATACACGGGCG+TGG 0.599666 5_4:+61869730 Msa0862240:CDS
AATATAAGGAGAAATTCAGA+TGG 0.600334 5_4:+61873099 Msa0862240:CDS
GAAATATTAGAAATCGTGGA+AGG 0.606501 5_4:+61873174 Msa0862240:CDS
GTATTATACTACCCATGCCA+GGG 0.611650 5_4:+61873454 Msa0862240:three_prime_UTR
AAGAAAATAAAAGAATCCCC+TGG 0.611700 5_4:-61873471 None:intergenic
ATGAAGGGGAGGAACGTGGT+TGG 0.613290 5_4:+61869774 Msa0862240:CDS
TCATGGCGAAGGACCATACA+CGG 0.616572 5_4:+61869724 Msa0862240:CDS
GATCGGTTACTCCATGTCAC+CGG 0.620224 5_4:+61869668 Msa0862240:CDS
AGCTTCTGTTGCTAACTGTG+TGG 0.621050 5_4:-61872395 None:intergenic
TCGGTGTTAATGCCTTATGT+TGG 0.621568 5_4:+61873255 Msa0862240:CDS
GTGCAAGAAAAGTTGCAGCA+TGG 0.622116 5_4:-61869577 None:intergenic
CTATAAAGTTGAGTGATGAA+GGG 0.622219 5_4:+61873151 Msa0862240:CDS
AACAAGACTCTCCGGCCCAA+CGG 0.631984 5_4:-61869693 None:intergenic
CATGTCATTGTTGAAGCGAA+AGG 0.635612 5_4:-61872428 None:intergenic
GGTGTTTGTTTAAGCAACGA+CGG 0.638178 5_4:+61872964 Msa0862240:CDS
TTAACGTAGTAGGACCTGCA+GGG 0.641562 5_4:+61872365 Msa0862240:CDS
CATGAGATATGTCAGTGAAG+CGG 0.643807 5_4:+61873203 Msa0862240:CDS
ATGAGTTCAAACACGAACGA+AGG 0.656155 5_4:+61873626 Msa0862240:three_prime_UTR
CAGTTAGCAACAGAAGCTGA+AGG 0.659999 5_4:+61872400 Msa0862240:CDS
ATATAAGGAGAAATTCAGAT+GGG 0.667598 5_4:+61873100 Msa0862240:CDS
TCTCCGCTAAGAAGTAAAAG+CGG 0.672637 5_4:-61872862 None:intergenic
AATTTCAAGGTCGAACTGTG+TGG 0.674077 5_4:+61872240 Msa0862240:intron
TACTACGTTAAGGCCAAGGT+AGG 0.676893 5_4:-61872353 None:intergenic
TAACGTAGTAGGACCTGCAG+GGG 0.691917 5_4:+61872366 Msa0862240:CDS
AGTTAGAGGATATTTGTGGG+AGG 0.696868 5_4:+61872278 Msa0862240:CDS
AGGACCATACACGGGCGTGG+CGG 0.702487 5_4:+61869733 Msa0862240:CDS
TATTATACTACCCATGCCAG+GGG 0.702948 5_4:+61873455 Msa0862240:three_prime_UTR
CATGGCGAAGGACCATACAC+GGG 0.708085 5_4:+61869725 Msa0862240:CDS
AACGTAGTAGGACCTGCAGG+GGG 0.714485 5_4:+61872367 Msa0862240:CDS
TTAGCGGAGACAAAACTGGG+AGG 0.751407 5_4:+61872875 Msa0862240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATTAAAAAAAAAAT+TGG + chr5_4:61870827-61870846 Msa0862240:intron 0.0%
!!! ATTTTAATATTTATAAATAT+GGG - chr5_4:61871076-61871095 None:intergenic 0.0%
!! TTTGAAAAAAATATATAAGA+AGG - chr5_4:61870498-61870517 None:intergenic 10.0%
!!! TTTGAAAATTTTGAAAAATA+TGG - chr5_4:61870537-61870556 None:intergenic 10.0%
!!! AATTTTATGAAAATTTATAG+GGG - chr5_4:61870564-61870583 None:intergenic 10.0%
!!! CAATTTTATGAAAATTTATA+GGG - chr5_4:61870565-61870584 None:intergenic 10.0%
!!! ACAATTTTATGAAAATTTAT+AGG - chr5_4:61870566-61870585 None:intergenic 10.0%
!!! ATTTTCATAAAATTGTAAAT+TGG + chr5_4:61870570-61870589 Msa0862240:intron 10.0%
!!! TTTTCATAAAATTGTAAATT+GGG + chr5_4:61870571-61870590 Msa0862240:intron 10.0%
!!! TTTATAAATTCAAGATTTTT+GGG - chr5_4:61870702-61870721 None:intergenic 10.0%
!!! TTTTATAAATTCAAGATTTT+TGG - chr5_4:61870703-61870722 None:intergenic 10.0%
!! AGTTATAAAAAAAAATTGTT+TGG - chr5_4:61870767-61870786 None:intergenic 10.0%
!!! TTTTAATAATTTAAAGTTCT+AGG - chr5_4:61870820-61870839 None:intergenic 10.0%
!! GAAATTTCATAAATTTAATT+TGG - chr5_4:61870981-61871000 None:intergenic 10.0%
!! AAAATTTGAAAATTATAAGA+AGG - chr5_4:61871041-61871060 None:intergenic 10.0%
!!! TTTGGAATTTTAAAAATTTT+AGG - chr5_4:61871141-61871160 None:intergenic 10.0%
!! TAGATATAAAAGTTAAAAAT+TGG + chr5_4:61873410-61873429 Msa0862240:three_prime_UTR 10.0%
!! CATTTATATTTAAATAATTG+TGG + chr5_4:61873569-61873588 Msa0862240:three_prime_UTR 10.0%
!!! TTTTCAAATTCTTTCTTTAT+TGG + chr5_4:61869859-61869878 Msa0862240:intron 15.0%
!!! TTTTTGGTACAATTTAATTT+TGG + chr5_4:61869889-61869908 Msa0862240:intron 15.0%
!! GGGTAAAAATAAAATAAAAA+TGG + chr5_4:61870073-61870092 Msa0862240:intron 15.0%
!!! TTGTTATTTTTTAAAACTGA+GGG - chr5_4:61870597-61870616 None:intergenic 15.0%
!!! TTTGTTATTTTTTAAAACTG+AGG - chr5_4:61870598-61870617 None:intergenic 15.0%
!!! TTATAAATTCAAGATTTTTG+GGG - chr5_4:61870701-61870720 None:intergenic 15.0%
!! AATTTCATTGTTATCATAAT+TGG - chr5_4:61870730-61870749 None:intergenic 15.0%
!!! TAAATAATTTGTTTAGATAG+AGG - chr5_4:61871286-61871305 None:intergenic 15.0%
!!! AATGATTAATACTTTGTTTT+TGG + chr5_4:61872623-61872642 Msa0862240:intron 15.0%
!!! ATGATTAATACTTTGTTTTT+GGG + chr5_4:61872624-61872643 Msa0862240:intron 15.0%
!! ATTAAATTTGATCTATATGT+TGG + chr5_4:61872816-61872835 Msa0862240:intron 15.0%
!! TATTGAATAACTAATGTATT+TGG + chr5_4:61873350-61873369 Msa0862240:intron 15.0%
!!! TCTTAACTTTTTTAATGTAA+TGG + chr5_4:61873490-61873509 Msa0862240:three_prime_UTR 15.0%
!!! CTTAACTTTTTTAATGTAAT+GGG + chr5_4:61873491-61873510 Msa0862240:three_prime_UTR 15.0%
!!! TTAACTTTTTTAATGTAATG+GGG + chr5_4:61873492-61873511 Msa0862240:three_prime_UTR 15.0%
!! TGATCATTCAAAAAAAAATA+AGG + chr5_4:61873689-61873708 Msa0862240:three_prime_UTR 15.0%
!! GATCATTCAAAAAAAAATAA+GGG + chr5_4:61873690-61873709 Msa0862240:three_prime_UTR 15.0%
!!! CTTTATTGGTATTCTTTTTT+TGG + chr5_4:61869873-61869892 Msa0862240:intron 20.0%
!! TCGAGAATAGTTTATAATTA+TGG + chr5_4:61870203-61870222 Msa0862240:intron 20.0%
!! CGAGAATAGTTTATAATTAT+GGG + chr5_4:61870204-61870223 Msa0862240:intron 20.0%
!!! GAAATTTTGAAATTTGATAG+GGG - chr5_4:61870678-61870697 None:intergenic 20.0%
!!! GGAAATTTTGAAATTTGATA+GGG - chr5_4:61870679-61870698 None:intergenic 20.0%
!!! TATAAATTCAAGATTTTTGG+GGG - chr5_4:61870700-61870719 None:intergenic 20.0%
!! AATAATGAAATTTAGCTAGA+AGG - chr5_4:61870905-61870924 None:intergenic 20.0%
!! TCTAGCTAAATTTCATTATT+TGG + chr5_4:61870905-61870924 Msa0862240:intron 20.0%
!!! TTTTTTAATTCTTAGGTGTT+TGG - chr5_4:61871013-61871032 None:intergenic 20.0%
!!! GGACTTTTTTTTTAATTCTT+AGG - chr5_4:61871020-61871039 None:intergenic 20.0%
!!! AATTTTCAAATTTTGCAAGT+TGG + chr5_4:61871047-61871066 Msa0862240:intron 20.0%
!!! ATTTTCAAATTTTGCAAGTT+GGG + chr5_4:61871048-61871067 Msa0862240:intron 20.0%
!! TTGCACTTGAATAATTTATA+GGG - chr5_4:61871111-61871130 None:intergenic 20.0%
!!! GCAAATTTTGAAAAAATTGA+GGG - chr5_4:61871168-61871187 None:intergenic 20.0%
!!! TGCAAATTTTGAAAAAATTG+AGG - chr5_4:61871169-61871188 None:intergenic 20.0%
!!! TTTTTTCAAAATTTGCAGTT+TGG + chr5_4:61871172-61871191 Msa0862240:intron 20.0%
!! AATTTGAAGATTGAAAAGTA+AGG - chr5_4:61871199-61871218 None:intergenic 20.0%
!! TGTAATTGAATCATTTGAAT+TGG + chr5_4:61871323-61871342 Msa0862240:intron 20.0%
!!! CTTAACTCTTTTTTTTTTTG+AGG - chr5_4:61871561-61871580 None:intergenic 20.0%
!! CAAAAAAAAAAAGAGTTAAG+TGG + chr5_4:61871561-61871580 Msa0862240:intron 20.0%
!!! TTTCATTTAATCTTTTGTTG+TGG - chr5_4:61871699-61871718 None:intergenic 20.0%
!! AAAATAAGCTAAAAATAGCT+TGG + chr5_4:61871779-61871798 Msa0862240:intron 20.0%
!! AAATAAGCTAAAAATAGCTT+GGG + chr5_4:61871780-61871799 Msa0862240:intron 20.0%
!!! TCTCAGTTTAATTTTTTTCA+TGG + chr5_4:61872104-61872123 Msa0862240:intron 20.0%
!! CTAAGATTTGATAAGAAAAA+TGG + chr5_4:61872310-61872329 Msa0862240:CDS 20.0%
!! TACACAATCACTATAAAAAA+TGG - chr5_4:61872728-61872747 None:intergenic 20.0%
!! AAACTATAAATACCAACATA+AGG - chr5_4:61873270-61873289 None:intergenic 20.0%
!! TCAATGACAAAATATCTTAA+TGG + chr5_4:61873722-61873741 Msa0862240:three_prime_UTR 20.0%
!! TGCATATTTCTATTACCTAT+TGG - chr5_4:61869822-61869841 None:intergenic 25.0%
! GTAATAGAAATATGCACATT+TGG + chr5_4:61869826-61869845 Msa0862240:intron 25.0%
! AAAGAAAGAATTTGAAAACG+TGG - chr5_4:61869857-61869876 None:intergenic 25.0%
! TTTCCAAATTCTTCCTTTAT+TGG + chr5_4:61869924-61869943 Msa0862240:intron 25.0%
! ATACCAATAAAGGAAGAATT+TGG - chr5_4:61869930-61869949 None:intergenic 25.0%
! CAAAAGAAGAATACCAATAA+AGG - chr5_4:61869940-61869959 None:intergenic 25.0%
!! CTTTATTGGTATTCTTCTTT+TGG + chr5_4:61869938-61869957 Msa0862240:intron 25.0%
!! AATTTAGCTTATTAGTGACT+AGG + chr5_4:61869985-61870004 Msa0862240:intron 25.0%
!! ATTTAGCTTATTAGTGACTA+GGG + chr5_4:61869986-61870005 Msa0862240:intron 25.0%
! TTCACCACTAGATTATTTAT+TGG + chr5_4:61870052-61870071 Msa0862240:intron 25.0%
! TCACCACTAGATTATTTATT+GGG + chr5_4:61870053-61870072 Msa0862240:intron 25.0%
! TTACCCAATAAATAATCTAG+TGG - chr5_4:61870059-61870078 None:intergenic 25.0%
!! ATTGTTGGTAGATATGTTAA+GGG + chr5_4:61870102-61870121 Msa0862240:intron 25.0%
! TCTCAAAATATTACATTACC+CGG - chr5_4:61870334-61870353 None:intergenic 25.0%
!!! TTTTTTCAAATCTTGCAAGT+TGG + chr5_4:61870508-61870527 Msa0862240:intron 25.0%
!!! GGGAAATTTTGAAATTTGAT+AGG - chr5_4:61870680-61870699 None:intergenic 25.0%
!!! AAAGTTCTAGGAAATTCAAA+TGG - chr5_4:61870808-61870827 None:intergenic 25.0%
! TGCACTTGAATAATTTATAG+GGG - chr5_4:61871110-61871129 None:intergenic 25.0%
! CTTGCACTTGAATAATTTAT+AGG - chr5_4:61871112-61871131 None:intergenic 25.0%
! TAAATTATTCAAGTGCAAGT+TGG + chr5_4:61871113-61871132 Msa0862240:intron 25.0%
! GAAAAAATTGAGGGTTAATT+TGG - chr5_4:61871159-61871178 None:intergenic 25.0%
!! TAAACACACTCTAAAAAGTT+AGG + chr5_4:61871385-61871404 Msa0862240:intron 25.0%
!! AAACACACTCTAAAAAGTTA+GGG + chr5_4:61871386-61871405 Msa0862240:intron 25.0%
! AATAAGCTAAAAATAGCTTG+GGG + chr5_4:61871781-61871800 Msa0862240:intron 25.0%
!! GCATTTTCTTATGAATTTCA+AGG + chr5_4:61872227-61872246 Msa0862240:intron 25.0%
!!! AAAGTTGATGGTAGAAAATA+AGG - chr5_4:61872538-61872557 None:intergenic 25.0%
!! AAGTGAATGTCTTATTAAGT+GGG + chr5_4:61872926-61872945 Msa0862240:CDS 25.0%
! AATATAAGGAGAAATTCAGA+TGG + chr5_4:61873099-61873118 Msa0862240:CDS 25.0%
! ATATAAGGAGAAATTCAGAT+GGG + chr5_4:61873100-61873119 Msa0862240:CDS 25.0%
!! AAAGATGGAAAACTTTTGAT+TGG + chr5_4:61873231-61873250 Msa0862240:CDS 25.0%
! AGAATACAATATACTCTTTC+TGG + chr5_4:61873293-61873312 Msa0862240:exon 25.0%
! CAAAATATCTTAATGGAGTT+CGG + chr5_4:61873729-61873748 Msa0862240:three_prime_UTR 25.0%
!!! AGTCTTGTTTTTGATAGTCA+TGG + chr5_4:61869707-61869726 Msa0862240:CDS 30.0%
TAAAAATGGTGTGACATTGT+TGG + chr5_4:61870087-61870106 Msa0862240:intron 30.0%
! CATTGTTGGTAGATATGTTA+AGG + chr5_4:61870101-61870120 Msa0862240:intron 30.0%
GAAGTAAAGAGTAAAGTCAA+GGG - chr5_4:61870253-61870272 None:intergenic 30.0%
TGAAGTAAAGAGTAAAGTCA+AGG - chr5_4:61870254-61870273 None:intergenic 30.0%
! TAAGACACTAAAAGTGTGTT+TGG + chr5_4:61870295-61870314 Msa0862240:intron 30.0%
GAATTTCTCTATGTTTAGCT+TGG - chr5_4:61870445-61870464 None:intergenic 30.0%
!! TCTAAGATTGGATGTTTTGA+GGG + chr5_4:61870870-61870889 Msa0862240:intron 30.0%
TTAATTCTTAGGTGTTTGGA+TGG - chr5_4:61871009-61871028 None:intergenic 30.0%
! AGAGGTATACTAGATTTCAT+TGG - chr5_4:61871268-61871287 None:intergenic 30.0%
AAAAAAAGAGTTAAGTGGCA+TGG + chr5_4:61871566-61871585 Msa0862240:intron 30.0%
TAAAAGACTTAGACGTTGTT+TGG + chr5_4:61871607-61871626 Msa0862240:intron 30.0%
TATGTAGAAACACGTATGAT+AGG - chr5_4:61871668-61871687 None:intergenic 30.0%
AAACATACCCTTATTCTACA+AGG + chr5_4:61871889-61871908 Msa0862240:intron 30.0%
!! TCTCTACCTTTTGTTTCAAA+CGG + chr5_4:61871941-61871960 Msa0862240:intron 30.0%
! ATGAAACCGTTTGAAACAAA+AGG - chr5_4:61871950-61871969 None:intergenic 30.0%
CTGAAAACAGATAGAAGATT+AGG - chr5_4:61872000-61872019 None:intergenic 30.0%
TTATCAAATCTTAGTCCTAG+TGG - chr5_4:61872304-61872323 None:intergenic 30.0%
CAAAATGCAGATAAAGTTGA+TGG - chr5_4:61872550-61872569 None:intergenic 30.0%
! GAAGTGAATGTCTTATTAAG+TGG + chr5_4:61872925-61872944 Msa0862240:CDS 30.0%
TTGCTTAAACAAACACCATT+GGG - chr5_4:61872961-61872980 None:intergenic 30.0%
! GAACAGCAAAAATATTGACT+TGG - chr5_4:61873062-61873081 None:intergenic 30.0%
!!! AATATTTTTGCTGTTCTTCC+AGG + chr5_4:61873066-61873085 Msa0862240:CDS 30.0%
GAATTTCTCCTTATATTGTC+CGG - chr5_4:61873096-61873115 None:intergenic 30.0%
CTATAAAGTTGAGTGATGAA+GGG + chr5_4:61873151-61873170 Msa0862240:CDS 30.0%
TATAAAGTTGAGTGATGAAG+GGG + chr5_4:61873152-61873171 Msa0862240:CDS 30.0%
GAAATATTAGAAATCGTGGA+AGG + chr5_4:61873174-61873193 Msa0862240:CDS 30.0%
!! TGGAAAACTTTTGATTGGAT+CGG + chr5_4:61873236-61873255 Msa0862240:CDS 30.0%
AAGAAAATAAAAGAATCCCC+TGG - chr5_4:61873474-61873493 None:intergenic 30.0%
! CATCTTTGCACTCTTTTCAT+CGG + chr5_4:61869610-61869629 Msa0862240:CDS 35.0%
!!! TTTTCATCGGTTCCTATTTC+TGG + chr5_4:61869623-61869642 Msa0862240:CDS 35.0%
CTATCAAAAACAAGACTCTC+CGG - chr5_4:61869704-61869723 None:intergenic 35.0%
!!! GTCGGATTTTGAAGTATGAA+GGG + chr5_4:61869759-61869778 Msa0862240:CDS 35.0%
!!! TCGGATTTTGAAGTATGAAG+GGG + chr5_4:61869760-61869779 Msa0862240:CDS 35.0%
AAAGGAAGAATTTGGAAACG+TGG - chr5_4:61869922-61869941 None:intergenic 35.0%
TTATTAGTGACTAGGGAGTA+GGG + chr5_4:61869993-61870012 Msa0862240:intron 35.0%
GTTTGGATGATTGAATGTAC+CGG + chr5_4:61870312-61870331 Msa0862240:intron 35.0%
TTTGGATGATTGAATGTACC+GGG + chr5_4:61870313-61870332 Msa0862240:intron 35.0%
!! GCAAATTTTGAGGGGTTAAA+TGG - chr5_4:61870648-61870667 None:intergenic 35.0%
ACCCCTCAAAATTTGCAAAT+CGG + chr5_4:61870652-61870671 Msa0862240:intron 35.0%
!! CATTCAAACACCTCTAAGAT+TGG + chr5_4:61870858-61870877 Msa0862240:intron 35.0%
CTCAAAACATCCAATCTTAG+AGG - chr5_4:61870871-61870890 None:intergenic 35.0%
!!! CTCTAAGATTGGATGTTTTG+AGG + chr5_4:61870869-61870888 Msa0862240:intron 35.0%
! CTCTAAAAAGTTAGGGTCAA+TGG + chr5_4:61871393-61871412 Msa0862240:intron 35.0%
GTCACTTGATCTATAACTTG+TGG - chr5_4:61871420-61871439 None:intergenic 35.0%
TCATGCCAAAATTGCTAGAT+CGG + chr5_4:61871442-61871461 Msa0862240:intron 35.0%
! AATGTCCGATCTAGCAATTT+TGG - chr5_4:61871450-61871469 None:intergenic 35.0%
ATCCACTTACATAAACCCTA+GGG - chr5_4:61871849-61871868 None:intergenic 35.0%
TATCCACTTACATAAACCCT+AGG - chr5_4:61871850-61871869 None:intergenic 35.0%
TTGCTTGCCTTGTAGAATAA+GGG - chr5_4:61871899-61871918 None:intergenic 35.0%
TTTGCTTGCCTTGTAGAATA+AGG - chr5_4:61871900-61871919 None:intergenic 35.0%
ATTGTTTGAGAATGCAAGCA+AGG + chr5_4:61871971-61871990 Msa0862240:intron 35.0%
!!! AATAGCTACTTTTTTGTCCG+AGG + chr5_4:61872139-61872158 Msa0862240:intron 35.0%
! AACCTTGTTGTACATATCCT+CGG - chr5_4:61872159-61872178 None:intergenic 35.0%
CAGAGTTAGAGGATATTTGT+GGG + chr5_4:61872275-61872294 Msa0862240:CDS 35.0%
ATGTCATTGTTGAAGCGAAA+GGG - chr5_4:61872430-61872449 None:intergenic 35.0%
TTGTTCACTTGAGTTCAGAT+AGG + chr5_4:61872658-61872677 Msa0862240:intron 35.0%
TGTTCACTTGAGTTCAGATA+GGG + chr5_4:61872659-61872678 Msa0862240:intron 35.0%
!!! TGTTGGTCACTTTTGTTTGT+AGG + chr5_4:61872833-61872852 Msa0862240:intron 35.0%
!! ATTCCGCTTTTACTTCTTAG+CGG + chr5_4:61872859-61872878 Msa0862240:CDS 35.0%
GTTGCTTAAACAAACACCAT+TGG - chr5_4:61872962-61872981 None:intergenic 35.0%
! GACGGTTTATTTCTTCTAGT+AGG + chr5_4:61872982-61873001 Msa0862240:CDS 35.0%
! AAATTCAGATGGGCAGTTTT+GGG + chr5_4:61873110-61873129 Msa0862240:CDS 35.0%
GCTATAAAGTTGAGTGATGA+AGG + chr5_4:61873150-61873169 Msa0862240:CDS 35.0%
AGGGGAAATATTAGAAATCG+TGG + chr5_4:61873170-61873189 Msa0862240:CDS 35.0%
TGGTTACAATTGAGATCAGA+TGG + chr5_4:61873430-61873449 Msa0862240:three_prime_UTR 35.0%
! GTAATGGGGAGTAATTATGT+TGG + chr5_4:61873506-61873525 Msa0862240:three_prime_UTR 35.0%
TAATGGAGTTCGGAAAATGT+AGG + chr5_4:61873739-61873758 Msa0862240:three_prime_UTR 35.0%
!! GGTTCCTATTTCTGGATCAA+AGG + chr5_4:61869631-61869650 Msa0862240:CDS 40.0%
CTGTCCTTTGATCCAGAAAT+AGG - chr5_4:61869638-61869657 None:intergenic 40.0%
!! GTTTTTGATAGTCATGGCGA+AGG + chr5_4:61869713-61869732 Msa0862240:CDS 40.0%
!!! GGTCGGATTTTGAAGTATGA+AGG + chr5_4:61869758-61869777 Msa0862240:CDS 40.0%
!!! GATTTTGAAGTATGAAGGGG+AGG + chr5_4:61869763-61869782 Msa0862240:CDS 40.0%
TTGCTGTCACTAGTTCCAAT+AGG + chr5_4:61869804-61869823 Msa0862240:CDS 40.0%
CTTATTAGTGACTAGGGAGT+AGG + chr5_4:61869992-61870011 Msa0862240:intron 40.0%
GGAGTAGGGAGACTTAAATT+GGG + chr5_4:61870007-61870026 Msa0862240:intron 40.0%
GGAGTCTCTTAAGCATATGT+GGG + chr5_4:61870123-61870142 Msa0862240:intron 40.0%
!!! GCCGATTTGCAAATTTTGAG+GGG - chr5_4:61870656-61870675 None:intergenic 40.0%
!!! GGCCGATTTGCAAATTTTGA+GGG - chr5_4:61870657-61870676 None:intergenic 40.0%
AAACCCTAGGGATACTGTTT+GGG - chr5_4:61871837-61871856 None:intergenic 40.0%
TAAACCCTAGGGATACTGTT+TGG - chr5_4:61871838-61871857 None:intergenic 40.0%
ATCCCTAGGGTTTATGTAAG+TGG + chr5_4:61871844-61871863 Msa0862240:intron 40.0%
AATTTCAAGGTCGAACTGTG+TGG + chr5_4:61872240-61872259 Msa0862240:intron 40.0%
CCACAAATATCCTCTAACTC+TGG - chr5_4:61872277-61872296 None:intergenic 40.0%
CCAGAGTTAGAGGATATTTG+TGG + chr5_4:61872274-61872293 Msa0862240:CDS 40.0%
AGTTAGAGGATATTTGTGGG+AGG + chr5_4:61872278-61872297 Msa0862240:CDS 40.0%
TACATTGTTGATGCCTACCT+TGG + chr5_4:61872340-61872359 Msa0862240:CDS 40.0%
CATGTCATTGTTGAAGCGAA+AGG - chr5_4:61872431-61872450 None:intergenic 40.0%
CTTTCGCTTCAACAATGACA+TGG + chr5_4:61872429-61872448 Msa0862240:CDS 40.0%
! AGTGTTGAACTTACCTTCTC+TGG - chr5_4:61872507-61872526 None:intergenic 40.0%
TCTCCGCTAAGAAGTAAAAG+CGG - chr5_4:61872865-61872884 None:intergenic 40.0%
TTCTTAGCGGAGACAAAACT+GGG + chr5_4:61872872-61872891 Msa0862240:CDS 40.0%
! AGTGGGCTTAATTATCCCAA+TGG + chr5_4:61872943-61872962 Msa0862240:CDS 40.0%
GGTGTTTGTTTAAGCAACGA+CGG + chr5_4:61872964-61872983 Msa0862240:CDS 40.0%
TAGGTGAAACTTCGACTTTC+CGG + chr5_4:61873001-61873020 Msa0862240:CDS 40.0%
! ATTCTTCGACTTTGGCTTCA+TGG + chr5_4:61873024-61873043 Msa0862240:CDS 40.0%
!! TATTGACTTGGCCAGCATTA+GGG - chr5_4:61873050-61873069 None:intergenic 40.0%
!! ATATTGACTTGGCCAGCATT+AGG - chr5_4:61873051-61873070 None:intergenic 40.0%
CTTATATTGTCCGGATAACC+TGG - chr5_4:61873087-61873106 None:intergenic 40.0%
CAGGTTATCCGGACAATATA+AGG + chr5_4:61873085-61873104 Msa0862240:CDS 40.0%
! GAAATTCAGATGGGCAGTTT+TGG + chr5_4:61873109-61873128 Msa0862240:CDS 40.0%
CATGAGATATGTCAGTGAAG+CGG + chr5_4:61873203-61873222 Msa0862240:CDS 40.0%
AGTGAAGCGGATGAAAAAGA+TGG + chr5_4:61873216-61873235 Msa0862240:CDS 40.0%
!! TCGGTGTTAATGCCTTATGT+TGG + chr5_4:61873255-61873274 Msa0862240:CDS 40.0%
AGTATTATACTACCCATGCC+AGG + chr5_4:61873453-61873472 Msa0862240:three_prime_UTR 40.0%
GTATTATACTACCCATGCCA+GGG + chr5_4:61873454-61873473 Msa0862240:three_prime_UTR 40.0%
TATTATACTACCCATGCCAG+GGG + chr5_4:61873455-61873474 Msa0862240:three_prime_UTR 40.0%
ATAAAAGAATCCCCTGGCAT+GGG - chr5_4:61873468-61873487 None:intergenic 40.0%
AATAAAAGAATCCCCTGGCA+TGG - chr5_4:61873469-61873488 None:intergenic 40.0%
ATGAGTTCAAACACGAACGA+AGG + chr5_4:61873626-61873645 Msa0862240:three_prime_UTR 40.0%
GTGCAAGAAAAGTTGCAGCA+TGG - chr5_4:61869580-61869599 None:intergenic 45.0%
GGGAGTAGGGAGACTTAAAT+TGG + chr5_4:61870006-61870025 Msa0862240:intron 45.0%
GGGAGTCTCTTAAGCATATG+TGG + chr5_4:61870122-61870141 Msa0862240:intron 45.0%
!!! GGGCCGATTTGCAAATTTTG+AGG - chr5_4:61870658-61870677 None:intergenic 45.0%
GCTAGATCGGACATTGTAAC+CGG + chr5_4:61871455-61871474 Msa0862240:intron 45.0%
AAAAATCACACACGCCCAAG+TGG - chr5_4:61871503-61871522 None:intergenic 45.0%
TCTCCCAAACAGTATCCCTA+GGG + chr5_4:61871831-61871850 Msa0862240:intron 45.0%
GTCCGAGGATATGTACAACA+AGG + chr5_4:61872154-61872173 Msa0862240:intron 45.0%
TACTACGTTAAGGCCAAGGT+AGG - chr5_4:61872356-61872375 None:intergenic 45.0%
!! TACCTTGGCCTTAACGTAGT+AGG + chr5_4:61872355-61872374 Msa0862240:CDS 45.0%
TTAACGTAGTAGGACCTGCA+GGG + chr5_4:61872365-61872384 Msa0862240:CDS 45.0%
AGCTTCTGTTGCTAACTGTG+TGG - chr5_4:61872398-61872417 None:intergenic 45.0%
CAGTTAGCAACAGAAGCTGA+AGG + chr5_4:61872400-61872419 Msa0862240:CDS 45.0%
CTTGAGTTCAGATAGGGAGA+TGG + chr5_4:61872665-61872684 Msa0862240:intron 45.0%
CTTCTTAGCGGAGACAAAAC+TGG + chr5_4:61872871-61872890 Msa0862240:CDS 45.0%
CTTTCCGGATTCTTCGACTT+TGG + chr5_4:61873016-61873035 Msa0862240:CDS 45.0%
GAAGCCAAAGTCGAAGAATC+CGG - chr5_4:61873023-61873042 None:intergenic 45.0%
TGCTGTTCTTCCAGGTTATC+CGG + chr5_4:61873074-61873093 Msa0862240:CDS 45.0%
CGCTTCACTGACATATCTCA+TGG - chr5_4:61873205-61873224 None:intergenic 45.0%
!!! CATTTTAATATTTATAAATA+TGG - chr5_4:61871077-61871096 None:intergenic 5.0%
!! TGTAAAAAAAAAAAAAAAAA+AGG - chr5_4:61871225-61871244 None:intergenic 5.0%
!! AAAATGATTTATAATTTATA+TGG - chr5_4:61871733-61871752 None:intergenic 5.0%
!! AAAAAAAAATATTAATTGTA+AGG - chr5_4:61872768-61872787 None:intergenic 5.0%
TGGATCAAAGGACAGTCTCC+AGG + chr5_4:61869643-61869662 Msa0862240:CDS 50.0%
GATCGGTTACTCCATGTCAC+CGG + chr5_4:61869668-61869687 Msa0862240:CDS 50.0%
TCATGGCGAAGGACCATACA+CGG + chr5_4:61869724-61869743 Msa0862240:CDS 50.0%
AAGTATGAAGGGGAGGAACG+TGG + chr5_4:61869770-61869789 Msa0862240:CDS 50.0%
AACCGGAGTTTCAACCCCAA+CGG + chr5_4:61871472-61871491 Msa0862240:intron 50.0%
CTCTCCCAAACAGTATCCCT+AGG + chr5_4:61871830-61871849 Msa0862240:intron 50.0%
TCCATTCGCACCAGAGTTAG+AGG + chr5_4:61872264-61872283 Msa0862240:CDS 50.0%
TCCTCTAACTCTGGTGCGAA+TGG - chr5_4:61872268-61872287 None:intergenic 50.0%
GATATTTGTGGGAGGCCACT+AGG + chr5_4:61872286-61872305 Msa0862240:CDS 50.0%
GTCCTACTACGTTAAGGCCA+AGG - chr5_4:61872360-61872379 None:intergenic 50.0%
CTGCAGGTCCTACTACGTTA+AGG - chr5_4:61872366-61872385 None:intergenic 50.0%
CTTAACGTAGTAGGACCTGC+AGG + chr5_4:61872364-61872383 Msa0862240:CDS 50.0%
TAACGTAGTAGGACCTGCAG+GGG + chr5_4:61872366-61872385 Msa0862240:CDS 50.0%
CAAGCACAGTCTACCAGAGA+AGG + chr5_4:61872491-61872510 Msa0862240:CDS 50.0%
GAGTTCAGATAGGGAGATGG+TGG + chr5_4:61872668-61872687 Msa0862240:intron 50.0%
! ATAGGGAGATGGTGGCTTTG+AGG + chr5_4:61872676-61872695 Msa0862240:intron 50.0%
TTAGCGGAGACAAAACTGGG+AGG + chr5_4:61872875-61872894 Msa0862240:CDS 50.0%
AGGACAGTCTCCAGGCTGAT+CGG + chr5_4:61869651-61869670 Msa0862240:CDS 55.0%
CATGGAGTAACCGATCAGCC+TGG - chr5_4:61869664-61869683 None:intergenic 55.0%
AACAAGACTCTCCGGCCCAA+CGG - chr5_4:61869696-61869715 None:intergenic 55.0%
CATGGCGAAGGACCATACAC+GGG + chr5_4:61869725-61869744 Msa0862240:CDS 55.0%
ATGAAGGGGAGGAACGTGGT+TGG + chr5_4:61869774-61869793 Msa0862240:CDS 55.0%
AGCCGTTGGGGTTGAAACTC+CGG - chr5_4:61871477-61871496 None:intergenic 55.0%
AATCACACACGCCCAAGTGG+AGG - chr5_4:61871500-61871519 None:intergenic 55.0%
AACGTAGTAGGACCTGCAGG+GGG + chr5_4:61872367-61872386 Msa0862240:CDS 55.0%
TGGCTTCATGGCCCTAATGC+TGG + chr5_4:61873036-61873055 Msa0862240:CDS 55.0%
TCCATGTCACCGGAGCCGTT+GGG + chr5_4:61869678-61869697 Msa0862240:CDS 60.0%
AGTAGGACCTGCAGGGGGTT+TGG + chr5_4:61872372-61872391 Msa0862240:CDS 60.0%
CTCCATGTCACCGGAGCCGT+TGG + chr5_4:61869677-61869696 Msa0862240:CDS 65.0%
CGAAGGACCATACACGGGCG+TGG + chr5_4:61869730-61869749 Msa0862240:CDS 65.0%
AGGACCATACACGGGCGTGG+CGG + chr5_4:61869733-61869752 Msa0862240:CDS 65.0%
ACCCCAACGGCTCCTCCACT+TGG + chr5_4:61871485-61871504 Msa0862240:intron 65.0%
CCCAAGTGGAGGAGCCGTTG+GGG - chr5_4:61871489-61871508 None:intergenic 65.0%
CCCCAACGGCTCCTCCACTT+GGG + chr5_4:61871486-61871505 Msa0862240:intron 65.0%
GCCCAAGTGGAGGAGCCGTT+GGG - chr5_4:61871490-61871509 None:intergenic 65.0%
TGTGTGGCCAAACCCCCTGC+AGG - chr5_4:61872382-61872401 None:intergenic 65.0%
GCCCAACGGCTCCGGTGACA+TGG - chr5_4:61869682-61869701 None:intergenic 70.0%
TGTCACCGGAGCCGTTGGGC+CGG + chr5_4:61869682-61869701 Msa0862240:CDS 70.0%
ACTCTCCGGCCCAACGGCTC+CGG - chr5_4:61869690-61869709 None:intergenic 70.0%
CCATCCGCCACGCCCGTGTA+TGG - chr5_4:61869740-61869759 None:intergenic 70.0%
! CCATACACGGGCGTGGCGGA+TGG + chr5_4:61869737-61869756 Msa0862240:CDS 70.0%
!! ACACGGGCGTGGCGGATGGT+CGG + chr5_4:61869741-61869760 Msa0862240:CDS 70.0%
CGCCCAAGTGGAGGAGCCGT+TGG - chr5_4:61871491-61871510 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61869521 61873768 61869521 ID=Msa0862240;Name=Msa0862240
chr5_4 mRNA 61869521 61873768 61869521 ID=Msa0862240-mRNA-1;Parent=Msa0862240;Name=Msa0862240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=36|1|1|1|0.66|0.5|4|418|323
chr5_4 exon 61869521 61869825 61869521 ID=Msa0862240-mRNA-1:exon:19196;Parent=Msa0862240-mRNA-1
chr5_4 exon 61872249 61872512 61872249 ID=Msa0862240-mRNA-1:exon:19197;Parent=Msa0862240-mRNA-1
chr5_4 exon 61872855 61873327 61872855 ID=Msa0862240-mRNA-1:exon:19198;Parent=Msa0862240-mRNA-1
chr5_4 exon 61873385 61873768 61873385 ID=Msa0862240-mRNA-1:exon:19199;Parent=Msa0862240-mRNA-1
chr5_4 five_prime_UTR 61869521 61869556 61869521 ID=Msa0862240-mRNA-1:five_prime_utr;Parent=Msa0862240-mRNA-1
chr5_4 CDS 61869557 61869825 61869557 ID=Msa0862240-mRNA-1:cds;Parent=Msa0862240-mRNA-1
chr5_4 CDS 61872249 61872512 61872249 ID=Msa0862240-mRNA-1:cds;Parent=Msa0862240-mRNA-1
chr5_4 CDS 61872855 61873293 61872855 ID=Msa0862240-mRNA-1:cds;Parent=Msa0862240-mRNA-1
chr5_4 three_prime_UTR 61873294 61873327 61873294 ID=Msa0862240-mRNA-1:three_prime_utr;Parent=Msa0862240-mRNA-1
chr5_4 three_prime_UTR 61873385 61873768 61873385 ID=Msa0862240-mRNA-1:three_prime_utr;Parent=Msa0862240-mRNA-1
Gene Sequence

>Msa0862240

ATGAACTTCAAAGACAGCATCCATGCTGCAACTTTTCTTGCACTCTTCTCTTGCATCTTTGCACTCTTTTCATCGGTTCCTATTTCTGGATCAAAGGACAGTCTCCAGGCTGATCGGTTACTCCATGTCACCGGAGCCGTTGGGCCGGAGAGTCTTGTTTTTGATAGTCATGGCGAAGGACCATACACGGGCGTGGCGGATGGTCGGATTTTGAAGTATGAAGGGGAGGAACGTGGTTGGACTGAATTTGCTGTCACTAGTTCCAATAGGTCGAACTGTGTGGTTCCATTCGCACCAGAGTTAGAGGATATTTGTGGGAGGCCACTAGGACTAAGATTTGATAAGAAAAATGGAGATTTGTACATTGTTGATGCCTACCTTGGCCTTAACGTAGTAGGACCTGCAGGGGGTTTGGCCACACAGTTAGCAACAGAAGCTGAAGGCACACCCTTTCGCTTCAACAATGACATGGACATTAGTGAAGATGAAGATGTGATTTACTTCACTGATTCAAGCACAGTCTACCAGAGAAGGCAAATTCCGCTTTTACTTCTTAGCGGAGACAAAACTGGGAGGTTAATGAAATATGACAAGTTAACGAGAGAAGTGAATGTCTTATTAAGTGGGCTTAATTATCCCAATGGTGTTTGTTTAAGCAACGACGGTTTATTTCTTCTAGTAGGTGAAACTTCGACTTTCCGGATTCTTCGACTTTGGCTTCATGGCCCTAATGCTGGCCAAGTCAATATTTTTGCTGTTCTTCCAGGTTATCCGGACAATATAAGGAGAAATTCAGATGGGCAGTTTTGGGTTGCTTTGCATAATGCAGCTATAAAGTTGAGTGATGAAGGGGAAATATTAGAAATCGTGGAAGGAAAGACCATGAGATATGTCAGTGAAGCGGATGAAAAAGATGGAAAACTTTTGATTGGATCGGTGTTAATGCCTTATGTTGGTATTTATAGTTTATGA

Protein sequence

>Msa0862240

MNFKDSIHAATFLALFSCIFALFSSVPISGSKDSLQADRLLHVTGAVGPESLVFDSHGEGPYTGVADGRILKYEGEERGWTEFAVTSSNRSNCVVPFAPELEDICGRPLGLRFDKKNGDLYIVDAYLGLNVVGPAGGLATQLATEAEGTPFRFNNDMDISEDEDVIYFTDSSTVYQRRQIPLLLLSGDKTGRLMKYDKLTREVNVLLSGLNYPNGVCLSNDGLFLLVGETSTFRILRLWLHGPNAGQVNIFAVLPGYPDNIRRNSDGQFWVALHNAAIKLSDEGEILEIVEGKTMRYVSEADEKDGKLLIGSVLMPYVGIYSL*