AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126790 MtrunA17_Chr7g0269301 98.148 162 3 0 1 162 1 162 1.07e-116 327
Msa1126790 MtrunA17_Chr1g0195661 66.667 168 49 3 1 162 1 167 2.77e-77 227
Msa1126790 MtrunA17_Chr1g0194801 42.500 160 79 6 6 158 5 158 4.89e-33 114
Msa1126790 MtrunA17_Chr1g0192651 40.741 162 89 4 1 159 1 158 5.34e-33 115
Msa1126790 MtrunA17_Chr1g0176311 36.905 168 93 4 7 162 21 187 1.22e-29 107
Msa1126790 MtrunA17_Chr1g0176321 38.506 174 88 5 7 162 2 174 2.83e-29 105
Msa1126790 MtrunA17_Chr5g0427291 39.181 171 88 5 1 156 1 170 2.40e-26 98.2
Msa1126790 MtrunA17_Chr4g0001641 49.206 63 32 0 94 156 3 65 3.05e-15 66.6
Msa1126790 MtrunA17_Chr2g0294421 28.144 167 92 4 12 162 9 163 1.20e-12 62.4
Msa1126790 MtrunA17_Chr5g0433951 31.288 163 96 6 4 156 1 157 1.20e-12 62.4
Msa1126790 MtrunA17_Chr4g0032261 30.719 153 96 4 12 157 9 158 5.73e-12 60.5
Msa1126790 MtrunA17_Chr7g0240701 32.911 158 96 5 6 156 3 157 6.94e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126790 AT2G47710.1 67.284 162 51 2 1 161 1 161 8.39e-72 213
Msa1126790 AT3G11930.1 39.506 162 85 4 10 159 35 195 3.17e-34 119
Msa1126790 AT3G11930.2 39.264 163 85 4 10 159 35 196 4.70e-34 119
Msa1126790 AT3G11930.4 39.024 164 85 4 10 159 35 197 7.27e-34 118
Msa1126790 AT1G09740.2 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1126790 AT1G09740.1 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1126790 AT3G58450.2 39.103 156 84 5 11 159 33 184 6.44e-29 105
Msa1126790 AT3G11930.3 33.862 189 85 5 10 159 35 222 5.96e-28 103
Msa1126790 AT5G49050.1 45.833 120 62 3 1 119 33 150 1.29e-27 100
Msa1126790 AT3G58450.1 38.037 163 83 6 11 159 33 191 1.03e-26 100
Msa1126790 AT3G62550.1 38.323 167 83 6 1 157 1 157 3.00e-26 97.8
Msa1126790 AT1G68300.1 35.948 153 90 5 7 156 10 157 1.91e-22 88.2

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTATTAATTGTTAA+TGG 0.188332 7_3:+78335301 None:intergenic
GAAGCACCATGCTTCTATTT+TGG 0.216579 7_3:-78334398 Msa1126790:CDS
TGAGATCAGTGTTTGGGTTT+TGG 0.228710 7_3:+78333911 None:intergenic
TCTACTAATGTTGGCTTCAT+AGG 0.275135 7_3:-78335072 Msa1126790:CDS
GAATTGAATTTATTCATATT+CGG 0.325701 7_3:+78335369 None:intergenic
TGAATGGACTCTGGATCATT+TGG 0.356319 7_3:-78335154 Msa1126790:CDS
ACAAGAACAAGTTTGAAGAT+TGG 0.363933 7_3:+78335114 None:intergenic
AAAATGTACTAAAATTGAAC+AGG 0.368682 7_3:-78333739 Msa1126790:three_prime_UTR
GTTGTAGGTAGTCATGGTTA+TGG 0.387360 7_3:-78334376 Msa1126790:CDS
TTAGCACATACGCTCTTGAA+TGG 0.393024 7_3:-78335170 Msa1126790:CDS
AGCCAGTGAGATCAGTGTTT+GGG 0.402587 7_3:+78333905 None:intergenic
CATGTTGAGTCTATAGAATA+AGG 0.405322 7_3:-78333787 Msa1126790:three_prime_UTR
TTCAAATCGGCCTCCACAAT+AGG 0.409491 7_3:+78334924 None:intergenic
TGGTTTCGACCGGCAAGGAC+AGG 0.411632 7_3:+78333709 None:intergenic
ACATAGAACAAACAACATAA+TGG 0.416195 7_3:+78333810 None:intergenic
ATTAGTAGAAGGAGAAGGTT+TGG 0.417086 7_3:+78335086 None:intergenic
AACAAGTTTGAAGATTGGAT+TGG 0.418326 7_3:+78335119 None:intergenic
CAGCCAGTGAGATCAGTGTT+TGG 0.432645 7_3:+78333904 None:intergenic
TATTAAAATTACCGATCTCT+TGG 0.443273 7_3:+78334857 None:intergenic
AGATTTATTCTGATTGTTGT+GGG 0.444580 7_3:+78333869 None:intergenic
ATGGTTATGGAGCTATAAAA+AGG 0.449333 7_3:-78334363 Msa1126790:intron
ACAAGTTTGAAGATTGGATT+GGG 0.449888 7_3:+78335120 None:intergenic
CCTTCTCCTTCTACTAATGT+TGG 0.462856 7_3:-78335081 Msa1126790:CDS
ATGAAGCCAACATTAGTAGA+AGG 0.466396 7_3:+78335075 None:intergenic
GGTTTCGACCGGCAAGGACA+GGG 0.491368 7_3:+78333710 None:intergenic
GATACAAGATCTATCTATCA+TGG 0.495254 7_3:-78335244 Msa1126790:exon
CGCTGAGATATTACCTATTG+TGG 0.517301 7_3:-78334937 Msa1126790:CDS
TATTCATATTCGGAGCATCA+AGG 0.545230 7_3:+78335379 None:intergenic
GTCCTTGCCGGTCGAAACCA+TGG 0.545250 7_3:-78333706 Msa1126790:three_prime_UTR
ATACGCTCTTGAATGGACTC+TGG 0.555617 7_3:-78335163 Msa1126790:CDS
ATAAATACCATGGTTTCGAC+CGG 0.555649 7_3:+78333699 None:intergenic
AAGATTTATTCTGATTGTTG+TGG 0.556092 7_3:+78333868 None:intergenic
AGACGTAGTAGTGGAAGTTG+TGG 0.557524 7_3:-78334458 Msa1126790:CDS
GTTTCGACCGGCAAGGACAG+GGG 0.559730 7_3:+78333711 None:intergenic
GTAGTAGTGGAAGTTGTGGA+TGG 0.560904 7_3:-78334454 Msa1126790:CDS
AGAAATCTGCACCAAGAGAT+CGG 0.569017 7_3:-78334868 Msa1126790:intron
CCAACATTAGTAGAAGGAGA+AGG 0.571033 7_3:+78335081 None:intergenic
AATGTTGGCTTCATAGGCCC+TGG 0.571494 7_3:-78335066 Msa1126790:intron
AACCCAAACACTGATCTCAC+TGG 0.576013 7_3:-78333907 Msa1126790:exon
AAATGTTCTTTGTGATGCTG+TGG 0.577056 7_3:-78334422 Msa1126790:CDS
TTTCGACCGGCAAGGACAGG+GGG 0.595146 7_3:+78333712 None:intergenic
GAGAAGCAAGTGATGGTGGT+CGG 0.595765 7_3:-78335210 Msa1126790:CDS
AAATGTACTAAAATTGAACA+GGG 0.597326 7_3:-78333738 Msa1126790:three_prime_UTR
TCAGGTAAAAGACGTAGTAG+TGG 0.600049 7_3:-78334467 Msa1126790:intron
ATTCATATTCGGAGCATCAA+GGG 0.601352 7_3:+78335380 None:intergenic
ACTAACTATGAGAGAACAAG+TGG 0.604787 7_3:+78335342 None:intergenic
TTCAGAGAAGCAAGTGATGG+TGG 0.623921 7_3:-78335214 Msa1126790:CDS
CTACAACCAAAATAGAAGCA+TGG 0.624553 7_3:+78334392 None:intergenic
TACCATGGTTTCGACCGGCA+AGG 0.626674 7_3:+78333704 None:intergenic
ACAAAATAAAATAAATACCA+TGG 0.633838 7_3:+78333689 None:intergenic
AGTTTCAGAGAAGCAAGTGA+TGG 0.653690 7_3:-78335217 Msa1126790:CDS
TGAGATATTACCTATTGTGG+AGG 0.658611 7_3:-78334934 Msa1126790:CDS
CACAATAGGTAATATCTCAG+CGG 0.686848 7_3:+78334938 None:intergenic
AATGTACTAAAATTGAACAG+GGG 0.730889 7_3:-78333737 Msa1126790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATTATTAATTGTTAA+TGG + chr7_3:78333729-78333748 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr7_3:78335344-78335363 Msa1126790:five_prime_UTR 10.0%
!! TACTTATTATTAATTGTTAA+TGG + chr7_3:78333729-78333748 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr7_3:78335344-78335363 Msa1126790:five_prime_UTR 10.0%
!! GAATTGAATTTATTCATATT+CGG + chr7_3:78333661-78333680 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr7_3:78334191-78334210 Msa1126790:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr7_3:78334392-78334411 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr7_3:78335275-78335294 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr7_3:78335341-78335360 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr7_3:78335345-78335364 Msa1126790:five_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr7_3:78333661-78333680 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr7_3:78334191-78334210 Msa1126790:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr7_3:78334392-78334411 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr7_3:78335275-78335294 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr7_3:78335341-78335360 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr7_3:78335345-78335364 Msa1126790:five_prime_UTR 15.0%
!! ATATATATACAAACATACCA+GGG + chr7_3:78333981-78334000 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr7_3:78333982-78334001 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr7_3:78334815-78334834 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr7_3:78335288-78335307 Msa1126790:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr7_3:78335289-78335308 Msa1126790:five_prime_UTR 20.0%
!! ATATATATACAAACATACCA+GGG + chr7_3:78333981-78334000 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr7_3:78333982-78334001 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr7_3:78334815-78334834 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr7_3:78335288-78335307 Msa1126790:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr7_3:78335289-78335308 Msa1126790:five_prime_UTR 20.0%
! TTGTAACAATGTTTATTCAG+CGG - chr7_3:78334063-78334082 Msa1126790:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr7_3:78334173-78334192 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr7_3:78334542-78334561 Msa1126790:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr7_3:78334746-78334765 Msa1126790:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr7_3:78335161-78335180 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr7_3:78335162-78335181 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr7_3:78335171-78335190 Msa1126790:CDS 25.0%
! ACATAGAACAAACAACATAA+TGG + chr7_3:78335220-78335239 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr7_3:78335290-78335309 Msa1126790:five_prime_UTR 25.0%
! TTGTAACAATGTTTATTCAG+CGG - chr7_3:78334063-78334082 Msa1126790:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr7_3:78334173-78334192 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr7_3:78334542-78334561 Msa1126790:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr7_3:78334746-78334765 Msa1126790:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr7_3:78335161-78335180 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr7_3:78335162-78335181 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr7_3:78335171-78335190 Msa1126790:CDS 25.0%
! ACATAGAACAAACAACATAA+TGG + chr7_3:78335220-78335239 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr7_3:78335290-78335309 Msa1126790:five_prime_UTR 25.0%
GATACAAGATCTATCTATCA+TGG - chr7_3:78333783-78333802 Msa1126790:three_prime_UTR 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr7_3:78333910-78333929 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr7_3:78333911-78333930 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr7_3:78333916-78333935 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr7_3:78334064-78334083 Msa1126790:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr7_3:78334119-78334138 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr7_3:78334298-78334317 Msa1126790:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr7_3:78334305-78334324 Msa1126790:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr7_3:78334428-78334447 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr7_3:78334507-78334526 Msa1126790:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr7_3:78334664-78334683 Msa1126790:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr7_3:78334707-78334726 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr7_3:78334959-78334978 Msa1126790:intron 30.0%
CCAATATAATCTCAAACGTA+GGG - chr7_3:78334960-78334979 Msa1126790:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr7_3:78335240-78335259 Msa1126790:exon 30.0%
GATACAAGATCTATCTATCA+TGG - chr7_3:78333783-78333802 Msa1126790:three_prime_UTR 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr7_3:78333910-78333929 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr7_3:78333911-78333930 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr7_3:78333916-78333935 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr7_3:78334064-78334083 Msa1126790:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr7_3:78334119-78334138 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr7_3:78334298-78334317 Msa1126790:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr7_3:78334305-78334324 Msa1126790:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr7_3:78334428-78334447 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr7_3:78334507-78334526 Msa1126790:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr7_3:78334664-78334683 Msa1126790:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr7_3:78334707-78334726 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr7_3:78334959-78334978 Msa1126790:intron 30.0%
CCAATATAATCTCAAACGTA+GGG - chr7_3:78334960-78334979 Msa1126790:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr7_3:78335240-78335259 Msa1126790:exon 30.0%
! ATTCATATTCGGAGCATCAA+GGG + chr7_3:78333650-78333669 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr7_3:78333651-78333670 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr7_3:78333688-78333707 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr7_3:78333944-78333963 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr7_3:78333955-78333974 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr7_3:78333955-78333974 Msa1126790:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG + chr7_3:78334092-78334111 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr7_3:78334093-78334112 Msa1126790:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr7_3:78334274-78334293 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr7_3:78334275-78334294 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr7_3:78334420-78334439 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr7_3:78334605-78334624 Msa1126790:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr7_3:78334638-78334657 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr7_3:78334636-78334655 Msa1126790:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr7_3:78334645-78334664 Msa1126790:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr7_3:78334708-78334727 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr7_3:78334723-78334742 Msa1126790:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr7_3:78334963-78334982 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr7_3:78335024-78335043 Msa1126790:intron 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr7_3:78335025-78335044 Msa1126790:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr7_3:78335331-78335350 None:intergenic 35.0%
! ATTCATATTCGGAGCATCAA+GGG + chr7_3:78333650-78333669 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr7_3:78333651-78333670 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr7_3:78333688-78333707 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr7_3:78333944-78333963 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr7_3:78333955-78333974 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr7_3:78333955-78333974 Msa1126790:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG + chr7_3:78334092-78334111 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr7_3:78334093-78334112 Msa1126790:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr7_3:78334274-78334293 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr7_3:78334275-78334294 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr7_3:78334420-78334439 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr7_3:78334605-78334624 Msa1126790:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr7_3:78334638-78334657 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr7_3:78334636-78334655 Msa1126790:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr7_3:78334645-78334664 Msa1126790:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr7_3:78334708-78334727 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr7_3:78334723-78334742 Msa1126790:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr7_3:78334963-78334982 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr7_3:78335024-78335043 Msa1126790:intron 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr7_3:78335025-78335044 Msa1126790:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr7_3:78335331-78335350 None:intergenic 35.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr7_3:78333810-78333829 Msa1126790:three_prime_UTR 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr7_3:78333857-78333876 Msa1126790:three_prime_UTR 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr7_3:78333873-78333892 Msa1126790:three_prime_UTR 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr7_3:78333949-78333968 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr7_3:78333946-78333965 Msa1126790:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG - chr7_3:78334090-78334109 Msa1126790:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr7_3:78334159-78334178 Msa1126790:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr7_3:78334261-78334280 Msa1126790:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr7_3:78334271-78334290 Msa1126790:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr7_3:78334276-78334295 Msa1126790:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr7_3:78334280-78334299 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr7_3:78334281-78334300 Msa1126790:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr7_3:78334284-78334303 Msa1126790:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr7_3:78334375-78334394 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr7_3:78334560-78334579 Msa1126790:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr7_3:78334629-78334648 Msa1126790:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr7_3:78334651-78334670 Msa1126790:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr7_3:78335035-78335054 Msa1126790:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr7_3:78335119-78335138 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr7_3:78333810-78333829 Msa1126790:three_prime_UTR 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr7_3:78333857-78333876 Msa1126790:three_prime_UTR 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr7_3:78333873-78333892 Msa1126790:three_prime_UTR 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr7_3:78333949-78333968 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr7_3:78333946-78333965 Msa1126790:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG - chr7_3:78334090-78334109 Msa1126790:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr7_3:78334159-78334178 Msa1126790:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr7_3:78334261-78334280 Msa1126790:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr7_3:78334271-78334290 Msa1126790:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr7_3:78334276-78334295 Msa1126790:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr7_3:78334280-78334299 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr7_3:78334281-78334300 Msa1126790:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr7_3:78334284-78334303 Msa1126790:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr7_3:78334375-78334394 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr7_3:78334560-78334579 Msa1126790:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr7_3:78334629-78334648 Msa1126790:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr7_3:78334651-78334670 Msa1126790:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr7_3:78335035-78335054 Msa1126790:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr7_3:78335119-78335138 None:intergenic 40.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr7_3:78333813-78333832 Msa1126790:three_prime_UTR 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr7_3:78333864-78333883 Msa1126790:three_prime_UTR 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr7_3:78334106-78334125 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr7_3:78334369-78334388 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr7_3:78334569-78334588 Msa1126790:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr7_3:78334573-78334592 Msa1126790:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr7_3:78334890-78334909 Msa1126790:CDS 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr7_3:78334915-78334934 Msa1126790:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr7_3:78335120-78335139 Msa1126790:CDS 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr7_3:78335125-78335144 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr7_3:78333813-78333832 Msa1126790:three_prime_UTR 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr7_3:78333864-78333883 Msa1126790:three_prime_UTR 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr7_3:78334106-78334125 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr7_3:78334369-78334388 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr7_3:78334569-78334588 Msa1126790:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr7_3:78334573-78334592 Msa1126790:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr7_3:78334890-78334909 Msa1126790:CDS 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr7_3:78334915-78334934 Msa1126790:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr7_3:78335120-78335139 Msa1126790:CDS 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr7_3:78335125-78335144 None:intergenic 45.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr7_3:78333817-78333836 Msa1126790:three_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr7_3:78333961-78333980 Msa1126790:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG - chr7_3:78334909-78334928 Msa1126790:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr7_3:78335126-78335145 None:intergenic 50.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr7_3:78333817-78333836 Msa1126790:three_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr7_3:78333961-78333980 Msa1126790:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG - chr7_3:78334909-78334928 Msa1126790:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr7_3:78335126-78335145 None:intergenic 50.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr7_3:78334921-78334940 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr7_3:78334928-78334947 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr7_3:78335326-78335345 None:intergenic 55.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr7_3:78334921-78334940 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr7_3:78334928-78334947 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr7_3:78335326-78335345 None:intergenic 55.0%
TTTCGACCGGCAAGGACAGG+GGG + chr7_3:78335318-78335337 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr7_3:78335319-78335338 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr7_3:78335320-78335339 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr7_3:78335321-78335340 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr7_3:78335321-78335340 Msa1126790:five_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr7_3:78335318-78335337 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr7_3:78335319-78335338 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr7_3:78335320-78335339 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr7_3:78335321-78335340 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr7_3:78335321-78335340 Msa1126790:five_prime_UTR 60.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr7_3:78335309-78335328 Msa1126790:five_prime_UTR 70.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr7_3:78335309-78335328 Msa1126790:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78333611 78335438 78333611 ID=Msa1126790;Name=Msa1126790
chr7_3 mRNA 78333611 78335438 78333611 ID=Msa1126790-mRNA-1;Parent=Msa1126790;Name=Msa1126790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191|1|1|1|1|1|4|305|162
chr7_3 exon 78333611 78334003 78333611 ID=Msa1126790-mRNA-1:exon:21859;Parent=Msa1126790-mRNA-1
chr7_3 exon 78334364 78334485 78334364 ID=Msa1126790-mRNA-1:exon:21858;Parent=Msa1126790-mRNA-1
chr7_3 exon 78334869 78334966 78334869 ID=Msa1126790-mRNA-1:exon:21857;Parent=Msa1126790-mRNA-1
chr7_3 exon 78335067 78335438 78335067 ID=Msa1126790-mRNA-1:exon:21856;Parent=Msa1126790-mRNA-1
chr7_3 five_prime_UTR 78335248 78335438 78335248 ID=Msa1126790-mRNA-1:five_prime_utr;Parent=Msa1126790-mRNA-1
chr7_3 CDS 78335067 78335247 78335067 ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3 CDS 78334869 78334966 78334869 ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3 CDS 78334364 78334485 78334364 ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3 CDS 78333916 78334003 78333916 ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3 three_prime_UTR 78333611 78333915 78333611 ID=Msa1126790-mRNA-1:three_prime_utr;Parent=Msa1126790-mRNA-1
Gene Sequence

>Msa1126790

ATGGCTCAAGTTTCAGAGAAGCAAGTGATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCGGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa1126790

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*