AlfalfaGEDB | Msa1126790

M. sativa cultivar zhongmu-4 / Msa1126790

KEGG: -
GO: -
PFAM: PF00582.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126790	XP_003625924.1	98.148	162	3	0	1	162	1	162	1.16e-112	327

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126790	B7FGF4	98.148	162	3	0	1	162	1	162	5.55e-113	327

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1126790	0.807983	3.872143e-50	-8.615850e-47
Msa0001040	Msa1126790	0.877226	7.449631e-69	-8.615850e-47
Msa0001510	Msa1126790	0.830394	3.010422e-55	-8.615850e-47
Msa0002110	Msa1126790	0.843972	1.008290e-58	-8.615850e-47
Msa0002690	Msa1126790	0.887048	2.008344e-72	-8.615850e-47
Msa0002700	Msa1126790	0.884042	2.688005e-71	-8.615850e-47
Msa0003340	Msa1126790	0.804743	1.866111e-49	-8.615850e-47
Msa0004180	Msa1126790	0.865893	4.242121e-65	-8.615850e-47
Msa0005500	Msa1126790	0.815618	8.429696e-52	-8.615850e-47
Msa0007570	Msa1126790	0.845380	4.210030e-59	-8.615850e-47

Showing 1 to 10 of 1,828 entries

Previous1 2 3 4 5…183Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126790	MtrunA17_Chr7g0269301	98.148	162	3	0	1	162	1	162	1.07e-116	327
Msa1126790	MtrunA17_Chr1g0195661	66.667	168	49	3	1	162	1	167	2.77e-77	227
Msa1126790	MtrunA17_Chr1g0194801	42.500	160	79	6	6	158	5	158	4.89e-33	114
Msa1126790	MtrunA17_Chr1g0192651	40.741	162	89	4	1	159	1	158	5.34e-33	115
Msa1126790	MtrunA17_Chr1g0176311	36.905	168	93	4	7	162	21	187	1.22e-29	107
Msa1126790	MtrunA17_Chr1g0176321	38.506	174	88	5	7	162	2	174	2.83e-29	105
Msa1126790	MtrunA17_Chr5g0427291	39.181	171	88	5	1	156	1	170	2.40e-26	98.2
Msa1126790	MtrunA17_Chr4g0001641	49.206	63	32	0	94	156	3	65	3.05e-15	66.6
Msa1126790	MtrunA17_Chr2g0294421	28.144	167	92	4	12	162	9	163	1.20e-12	62.4
Msa1126790	MtrunA17_Chr5g0433951	31.288	163	96	6	4	156	1	157	1.20e-12	62.4

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126790	AT2G47710.1	67.284	162	51	2	1	161	1	161	8.39e-72	213
Msa1126790	AT3G11930.1	39.506	162	85	4	10	159	35	195	3.17e-34	119
Msa1126790	AT3G11930.2	39.264	163	85	4	10	159	35	196	4.70e-34	119
Msa1126790	AT3G11930.4	39.024	164	85	4	10	159	35	197	7.27e-34	118
Msa1126790	AT1G09740.2	42.767	159	80	4	10	159	10	166	7.16e-33	115
Msa1126790	AT1G09740.1	42.767	159	80	4	10	159	10	166	7.16e-33	115
Msa1126790	AT3G58450.2	39.103	156	84	5	11	159	33	184	6.44e-29	105
Msa1126790	AT3G11930.3	33.862	189	85	5	10	159	35	222	5.96e-28	103
Msa1126790	AT5G49050.1	45.833	120	62	3	1	119	33	150	1.29e-27	100
Msa1126790	AT3G58450.1	38.037	163	83	6	11	159	33	191	1.03e-26	100

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACTAAAATTGAAC+AGG	0.368682	7_3:-78333739	Msa1126790:three_prime_UTR
AAATGTACTAAAATTGAACA+GGG	0.597326	7_3:-78333738	Msa1126790:three_prime_UTR
AAATGTTCTTTGTGATGCTG+TGG	0.577056	7_3:-78334422	Msa1126790:CDS
AACAAGTTTGAAGATTGGAT+TGG	0.418326	7_3:+78335119	None:intergenic
AACCCAAACACTGATCTCAC+TGG	0.576013	7_3:-78333907	Msa1126790:exon
AAGATTTATTCTGATTGTTG+TGG	0.556092	7_3:+78333868	None:intergenic
AATGTACTAAAATTGAACAG+GGG	0.730889	7_3:-78333737	Msa1126790:three_prime_UTR
AATGTTGGCTTCATAGGCCC+TGG	0.571494	7_3:-78335066	Msa1126790:intron
ACAAAATAAAATAAATACCA+TGG	0.633838	7_3:+78333689	None:intergenic
ACAAGAACAAGTTTGAAGAT+TGG	0.363933	7_3:+78335114	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATACAAGATCTATCTATCA+TGG	-	chr7_3:78333783-78333802	Msa1126790:three_prime_UTR	30.0%
ACAAGTTTGAAGATTGGATT+GGG	+	chr7_3:78333910-78333929	None:intergenic	30.0%
AACAAGTTTGAAGATTGGAT+TGG	+	chr7_3:78333911-78333930	None:intergenic	30.0%
ACAAGAACAAGTTTGAAGAT+TGG	+	chr7_3:78333916-78333935	None:intergenic	30.0%
TGTAACAATGTTTATTCAGC+GGG	-	chr7_3:78334064-78334083	Msa1126790:intron	30.0%
ATGTAACTTTGCATTTGCTT+AGG	+	chr7_3:78334428-78334447	None:intergenic	30.0%
ATACTGTGTATGCATACATA+TGG	-	chr7_3:78334507-78334526	Msa1126790:intron	30.0%
ATGGTTATGGAGCTATAAAA+AGG	-	chr7_3:78334664-78334683	Msa1126790:intron	30.0%
AATGCAATAGCATGATAACT+GGG	+	chr7_3:78334707-78334726	None:intergenic	30.0%
ACCAATATAATCTCAAACGT+AGG	-	chr7_3:78334959-78334978	Msa1126790:intron	30.0%

Showing 1 to 10 of 200 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	78333611	78335438	78333611	ID=Msa1126790;Name=Msa1126790
chr7_3	mRNA	78333611	78335438	78333611	ID=Msa1126790-mRNA-1;Parent=Msa1126790;Name=Msa1126790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191\|1\|1\|1\|1\|1\|4\|305\|162
chr7_3	exon	78333611	78334003	78333611	ID=Msa1126790-mRNA-1:exon:21859;Parent=Msa1126790-mRNA-1
chr7_3	exon	78334364	78334485	78334364	ID=Msa1126790-mRNA-1:exon:21858;Parent=Msa1126790-mRNA-1
chr7_3	exon	78334869	78334966	78334869	ID=Msa1126790-mRNA-1:exon:21857;Parent=Msa1126790-mRNA-1
chr7_3	exon	78335067	78335438	78335067	ID=Msa1126790-mRNA-1:exon:21856;Parent=Msa1126790-mRNA-1
chr7_3	five_prime_UTR	78335248	78335438	78335248	ID=Msa1126790-mRNA-1:five_prime_utr;Parent=Msa1126790-mRNA-1
chr7_3	CDS	78335067	78335247	78335067	ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3	CDS	78334869	78334966	78334869	ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3	CDS	78334364	78334485	78334364	ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3	CDS	78333916	78334003	78333916	ID=Msa1126790-mRNA-1:cds;Parent=Msa1126790-mRNA-1
chr7_3	three_prime_UTR	78333611	78333915	78333611	ID=Msa1126790-mRNA-1:three_prime_utr;Parent=Msa1126790-mRNA-1

Gene Sequence

>Msa1126790

ATGGCTCAAGTTTCAGAGAAGCAAGTGATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCGGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa1126790

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*