AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342050 MtrunA17_CPg0492851 99.385 325 2 0 65 389 1 325 0.0 658
Msa1342050 MtrunA17_Chr4g0015731 99.385 325 2 0 65 389 1 325 0.0 658
Msa1342050 MtrunA17_Chr4g0016821 99.385 325 2 0 65 389 1 325 0.0 658
Msa1342050 MtrunA17_Chr4g0016981 82.301 113 5 1 108 220 42 139 9.57e-58 185
Msa1342050 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.21e-36 126
Msa1342050 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.14e-35 127
Msa1342050 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.09e-34 127
Msa1342050 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.09e-34 127
Msa1342050 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.10e-34 127
Msa1342050 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 2.80e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342050 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 593
Msa1342050 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.23e-18 84.0

Find 86 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0005022:-14097 Msa1342050:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0005022:-15514 Msa1342050:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0005022:-14112 Msa1342050:CDS
CTTGTGGCAGGCCCCGTTCC+TGG 0.213164 tig0005022:-14528 Msa1342050:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0005022:-15513 Msa1342050:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0005022:+14189 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0005022:+15519 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0005022:+14793 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0005022:-14425 Msa1342050:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0005022:+14516 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0005022:-14177 Msa1342050:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0005022:-15481 Msa1342050:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0005022:-14324 Msa1342050:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0005022:-14424 Msa1342050:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0005022:+14426 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0005022:-14696 Msa1342050:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0005022:+15591 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0005022:+14234 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0005022:-14172 Msa1342050:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0005022:+14174 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0005022:+14711 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0005022:-15480 Msa1342050:CDS
TTGTGGCAGGCCCCGTTCCT+GGG 0.420328 tig0005022:-14527 Msa1342050:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0005022:+14468 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0005022:+14878 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0005022:-14357 Msa1342050:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0005022:+14920 None:intergenic
AAATCGTATGGATACGATCT+TGG 0.456915 tig0005022:+15570 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0005022:+14384 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0005022:-15527 Msa1342050:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0005022:+15558 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0005022:+14744 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0005022:+14971 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0005022:-14301 Msa1342050:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0005022:+14743 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0005022:+14510 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0005022:+14879 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0005022:+14926 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0005022:-14129 Msa1342050:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0005022:+14914 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0005022:+14831 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0005022:-14431 Msa1342050:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0005022:-14784 Msa1342050:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0005022:-14170 Msa1342050:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0005022:+14777 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0005022:+14383 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0005022:-14234 Msa1342050:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0005022:+14515 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0005022:-14171 Msa1342050:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0005022:+14609 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0005022:-15512 Msa1342050:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0005022:+14240 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0005022:+14480 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0005022:-14417 Msa1342050:CDS
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0005022:+14461 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0005022:-14235 Msa1342050:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0005022:-14836 Msa1342050:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0005022:+14925 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0005022:-14258 Msa1342050:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0005022:+14462 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0005022:-14187 Msa1342050:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0005022:+14633 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0005022:-14398 Msa1342050:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0005022:-14419 Msa1342050:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0005022:-14288 Msa1342050:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0005022:+14485 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0005022:+14123 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0005022:-14837 Msa1342050:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0005022:-14169 Msa1342050:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0005022:-14432 Msa1342050:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0005022:-14435 Msa1342050:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0005022:-14183 Msa1342050:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0005022:+14612 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0005022:+14818 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0005022:-14292 Msa1342050:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0005022:+14517 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0005022:-14423 Msa1342050:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0005022:-14418 Msa1342050:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0005022:-14186 Msa1342050:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0005022:-14772 Msa1342050:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0005022:+14613 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0005022:+14614 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0005022:-14399 Msa1342050:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0005022:+14759 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0005022:+14243 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0005022:-14833 Msa1342050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + tig0005022:14238-14257 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0005022:14239-14258 Msa1342050:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0005022:14375-14394 Msa1342050:CDS 15.0%
!!! AAATGATTTTCTTAGAATAT+AGG + tig0005022:14567-14586 None:intergenic 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0005022:14635-14654 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0005022:15100-15119 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0005022:15319-15338 Msa1342050:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0005022:15588-15607 Msa1342050:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + tig0005022:14238-14257 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0005022:14239-14258 Msa1342050:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0005022:14375-14394 Msa1342050:CDS 15.0%
!!! AAATGATTTTCTTAGAATAT+AGG + tig0005022:14567-14586 None:intergenic 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0005022:14635-14654 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0005022:15100-15119 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0005022:15319-15338 Msa1342050:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0005022:15588-15607 Msa1342050:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0005022:14368-14387 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0005022:14476-14495 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0005022:14636-14655 Msa1342050:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0005022:15053-15072 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0005022:15101-15120 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0005022:15099-15118 Msa1342050:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0005022:15208-15227 Msa1342050:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0005022:14368-14387 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0005022:14476-14495 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0005022:14636-14655 Msa1342050:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0005022:15053-15072 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0005022:15101-15120 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0005022:15099-15118 Msa1342050:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0005022:15208-15227 Msa1342050:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0005022:14116-14135 Msa1342050:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0005022:14127-14146 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0005022:14129-14148 Msa1342050:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0005022:14130-14149 Msa1342050:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0005022:14162-14181 Msa1342050:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0005022:14163-14182 Msa1342050:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0005022:14326-14345 Msa1342050:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0005022:14406-14425 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0005022:14585-14604 Msa1342050:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0005022:14590-14609 Msa1342050:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0005022:14591-14610 Msa1342050:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0005022:14631-14650 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0005022:14648-14667 Msa1342050:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0005022:14678-14697 Msa1342050:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0005022:14685-14704 Msa1342050:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0005022:14732-14751 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0005022:14935-14954 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0005022:14957-14976 Msa1342050:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0005022:15052-15071 None:intergenic 25.0%
! AAAAAAAATATTCTTGTGGC+AGG - tig0005022:15103-15122 Msa1342050:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0005022:15322-15341 Msa1342050:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0005022:15561-15580 Msa1342050:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0005022:14116-14135 Msa1342050:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0005022:14127-14146 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0005022:14129-14148 Msa1342050:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0005022:14130-14149 Msa1342050:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0005022:14162-14181 Msa1342050:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0005022:14163-14182 Msa1342050:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0005022:14326-14345 Msa1342050:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0005022:14406-14425 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0005022:14585-14604 Msa1342050:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0005022:14590-14609 Msa1342050:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0005022:14591-14610 Msa1342050:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0005022:14631-14650 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0005022:14648-14667 Msa1342050:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0005022:14678-14697 Msa1342050:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0005022:14685-14704 Msa1342050:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0005022:14732-14751 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0005022:14935-14954 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0005022:14957-14976 Msa1342050:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0005022:15052-15071 None:intergenic 25.0%
! AAAAAAAATATTCTTGTGGC+AGG - tig0005022:15103-15122 Msa1342050:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0005022:15322-15341 Msa1342050:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0005022:15561-15580 Msa1342050:CDS 25.0%
TACAGAAATGCAAAATCGTA+TGG + tig0005022:14088-14107 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0005022:14131-14150 Msa1342050:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0005022:14360-14379 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0005022:14428-14447 None:intergenic 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0005022:14624-14643 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0005022:14675-14694 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0005022:14767-14786 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0005022:14768-14787 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0005022:14859-14878 Msa1342050:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0005022:14903-14922 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0005022:14947-14966 Msa1342050:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0005022:14956-14975 Msa1342050:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0005022:14958-14977 Msa1342050:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0005022:15049-15068 Msa1342050:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0005022:15136-15155 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0005022:15211-15230 Msa1342050:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0005022:15457-15476 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0005022:15456-15475 Msa1342050:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0005022:15457-15476 Msa1342050:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0005022:15546-15565 Msa1342050:CDS 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0005022:14088-14107 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0005022:14131-14150 Msa1342050:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0005022:14360-14379 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0005022:14428-14447 None:intergenic 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0005022:14624-14643 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0005022:14675-14694 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0005022:14767-14786 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0005022:14768-14787 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0005022:14859-14878 Msa1342050:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0005022:14903-14922 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0005022:14947-14966 Msa1342050:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0005022:14956-14975 Msa1342050:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0005022:14958-14977 Msa1342050:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0005022:15049-15068 Msa1342050:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0005022:15136-15155 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0005022:15211-15230 Msa1342050:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0005022:15457-15476 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0005022:15456-15475 Msa1342050:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0005022:15457-15476 Msa1342050:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0005022:15546-15565 Msa1342050:CDS 30.0%
AAATCGTATGGATACGATCT+TGG + tig0005022:14076-14095 None:intergenic 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0005022:14257-14276 Msa1342050:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0005022:14262-14281 Msa1342050:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0005022:14276-14295 Msa1342050:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0005022:14296-14315 Msa1342050:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0005022:14778-14797 Msa1342050:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0005022:14779-14798 Msa1342050:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0005022:14785-14804 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0005022:14786-14805 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0005022:14853-14872 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0005022:14902-14921 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0005022:14971-14990 Msa1342050:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0005022:14994-15013 Msa1342050:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0005022:14995-15014 Msa1342050:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0005022:15006-15025 Msa1342050:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0005022:15131-15150 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0005022:15161-15180 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0005022:15212-15231 Msa1342050:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0005022:15286-15305 Msa1342050:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0005022:15342-15361 Msa1342050:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0005022:15351-15370 Msa1342050:intron 35.0%
AAATCGTATGGATACGATCT+TGG + tig0005022:14076-14095 None:intergenic 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0005022:14257-14276 Msa1342050:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0005022:14262-14281 Msa1342050:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0005022:14276-14295 Msa1342050:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0005022:14296-14315 Msa1342050:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0005022:14778-14797 Msa1342050:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0005022:14779-14798 Msa1342050:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0005022:14785-14804 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0005022:14786-14805 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0005022:14853-14872 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0005022:14902-14921 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0005022:14971-14990 Msa1342050:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0005022:14994-15013 Msa1342050:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0005022:14995-15014 Msa1342050:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0005022:15006-15025 Msa1342050:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0005022:15131-15150 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0005022:15161-15180 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0005022:15212-15231 Msa1342050:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0005022:15286-15305 Msa1342050:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0005022:15342-15361 Msa1342050:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0005022:15351-15370 Msa1342050:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0005022:14055-14074 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0005022:14261-14280 Msa1342050:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0005022:14275-14294 Msa1342050:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0005022:14721-14740 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0005022:14726-14745 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0005022:14869-14888 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0005022:14871-14890 Msa1342050:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0005022:15129-15148 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0005022:15130-15149 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0005022:15184-15203 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0005022:15185-15204 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0005022:15219-15238 Msa1342050:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0005022:15263-15282 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0005022:15385-15404 Msa1342050:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0005022:15408-15427 Msa1342050:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0005022:15409-15428 Msa1342050:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0005022:15466-15485 Msa1342050:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0005022:15523-15542 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0005022:15531-15550 Msa1342050:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0005022:14055-14074 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0005022:14261-14280 Msa1342050:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0005022:14275-14294 Msa1342050:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0005022:14721-14740 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0005022:14726-14745 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0005022:14869-14888 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0005022:14871-14890 Msa1342050:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0005022:15129-15148 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0005022:15130-15149 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0005022:15184-15203 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0005022:15185-15204 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0005022:15219-15238 Msa1342050:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0005022:15263-15282 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0005022:15385-15404 Msa1342050:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0005022:15408-15427 Msa1342050:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0005022:15409-15428 Msa1342050:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0005022:15466-15485 Msa1342050:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0005022:15523-15542 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0005022:15531-15550 Msa1342050:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0005022:14268-14287 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0005022:14720-14739 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0005022:14806-14825 Msa1342050:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0005022:14807-14826 Msa1342050:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0005022:14828-14847 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0005022:15220-15239 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0005022:15218-15237 Msa1342050:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0005022:15220-15239 Msa1342050:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0005022:15262-15281 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0005022:15406-15425 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0005022:15412-15431 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0005022:15460-15479 Msa1342050:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0005022:15472-15491 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0005022:15471-15490 Msa1342050:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0005022:15472-15491 Msa1342050:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0005022:15514-15533 Msa1342050:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0005022:14268-14287 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0005022:14720-14739 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0005022:14806-14825 Msa1342050:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0005022:14807-14826 Msa1342050:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0005022:14828-14847 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0005022:15220-15239 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0005022:15218-15237 Msa1342050:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0005022:15220-15239 Msa1342050:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0005022:15262-15281 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0005022:15406-15425 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0005022:15412-15431 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0005022:15460-15479 Msa1342050:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0005022:15472-15491 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0005022:15471-15490 Msa1342050:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0005022:15472-15491 Msa1342050:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0005022:15514-15533 Msa1342050:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0005022:14484-14503 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0005022:14484-14503 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + tig0005022:15037-15056 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0005022:15166-15185 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0005022:15178-15197 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0005022:15244-15263 Msa1342050:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0005022:15355-15374 Msa1342050:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0005022:15403-15422 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0005022:15473-15492 Msa1342050:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + tig0005022:15037-15056 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0005022:15166-15185 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0005022:15178-15197 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0005022:15244-15263 Msa1342050:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0005022:15355-15374 Msa1342050:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0005022:15403-15422 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0005022:15473-15492 Msa1342050:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0005022:14887-14906 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0005022:15013-15032 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0005022:15032-15051 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0005022:15033-15052 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0005022:15034-15053 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0005022:15245-15264 Msa1342050:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0005022:15474-15493 Msa1342050:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0005022:14887-14906 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0005022:15013-15032 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0005022:15032-15051 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0005022:15033-15052 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0005022:15034-15053 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0005022:15245-15264 Msa1342050:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0005022:15474-15493 Msa1342050:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0005022:14810-14829 Msa1342050:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0005022:14815-14834 None:intergenic 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0005022:15224-15243 Msa1342050:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0005022:15225-15244 Msa1342050:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0005022:15226-15245 Msa1342050:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0005022:14810-14829 Msa1342050:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0005022:14815-14834 None:intergenic 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0005022:15224-15243 Msa1342050:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0005022:15225-15244 Msa1342050:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0005022:15226-15245 Msa1342050:intron 60.0%
TTGTGGCAGGCCCCGTTCCT+GGG - tig0005022:15116-15135 Msa1342050:intron 65.0%
TTGTGGCAGGCCCCGTTCCT+GGG - tig0005022:15116-15135 Msa1342050:intron 65.0%
CTTGTGGCAGGCCCCGTTCC+TGG - tig0005022:15115-15134 Msa1342050:intron 70.0%
CTTGTGGCAGGCCCCGTTCC+TGG - tig0005022:15115-15134 Msa1342050:intron 70.0%
Chromosome Type Strat End Strand Name
tig0005022 gene 14029 15636 14029 ID=Msa1342050;Name=Msa1342050
tig0005022 mRNA 14029 15636 14029 ID=Msa1342050-mRNA-1;Parent=Msa1342050;Name=Msa1342050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0005022 exon 15456 15636 15456 ID=Msa1342050-mRNA-1:exon:3438;Parent=Msa1342050-mRNA-1
tig0005022 exon 14029 15017 14029 ID=Msa1342050-mRNA-1:exon:3437;Parent=Msa1342050-mRNA-1
tig0005022 CDS 15456 15636 15456 ID=Msa1342050-mRNA-1:cds;Parent=Msa1342050-mRNA-1
tig0005022 CDS 14029 15017 14029 ID=Msa1342050-mRNA-1:cds;Parent=Msa1342050-mRNA-1
Gene Sequence

>Msa1342050

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGATCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGCAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1342050

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVAGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*