AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581090 MtrunA17_Chr7g0269301 98.148 162 3 0 1 162 1 162 1.07e-116 327
Msa0581090 MtrunA17_Chr1g0195661 66.667 168 49 3 1 162 1 167 2.77e-77 227
Msa0581090 MtrunA17_Chr1g0194801 42.500 160 79 6 6 158 5 158 4.89e-33 114
Msa0581090 MtrunA17_Chr1g0192651 40.741 162 89 4 1 159 1 158 5.34e-33 115
Msa0581090 MtrunA17_Chr1g0176311 36.905 168 93 4 7 162 21 187 1.22e-29 107
Msa0581090 MtrunA17_Chr1g0176321 38.506 174 88 5 7 162 2 174 2.83e-29 105
Msa0581090 MtrunA17_Chr5g0427291 39.181 171 88 5 1 156 1 170 2.40e-26 98.2
Msa0581090 MtrunA17_Chr4g0001641 49.206 63 32 0 94 156 3 65 3.05e-15 66.6
Msa0581090 MtrunA17_Chr2g0294421 28.144 167 92 4 12 162 9 163 1.20e-12 62.4
Msa0581090 MtrunA17_Chr5g0433951 31.288 163 96 6 4 156 1 157 1.20e-12 62.4
Msa0581090 MtrunA17_Chr4g0032261 30.719 153 96 4 12 157 9 158 5.73e-12 60.5
Msa0581090 MtrunA17_Chr7g0240701 32.911 158 96 5 6 156 3 157 6.94e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581090 AT2G47710.1 67.284 162 51 2 1 161 1 161 8.39e-72 213
Msa0581090 AT3G11930.1 39.506 162 85 4 10 159 35 195 3.17e-34 119
Msa0581090 AT3G11930.2 39.264 163 85 4 10 159 35 196 4.70e-34 119
Msa0581090 AT3G11930.4 39.024 164 85 4 10 159 35 197 7.27e-34 118
Msa0581090 AT1G09740.2 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa0581090 AT1G09740.1 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa0581090 AT3G58450.2 39.103 156 84 5 11 159 33 184 6.44e-29 105
Msa0581090 AT3G11930.3 33.862 189 85 5 10 159 35 222 5.96e-28 103
Msa0581090 AT5G49050.1 45.833 120 62 3 1 119 33 150 1.29e-27 100
Msa0581090 AT3G58450.1 38.037 163 83 6 11 159 33 191 1.03e-26 100
Msa0581090 AT3G62550.1 38.323 167 83 6 1 157 1 157 3.00e-26 97.8
Msa0581090 AT1G68300.1 35.948 153 90 5 7 156 10 157 1.91e-22 88.2

Find 67 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTATTAATTGTTAA+TGG 0.188332 4_1:+86435113 None:intergenic
CTAGCTGGAGCTGGAATTAA+TGG 0.212017 4_1:+86435323 None:intergenic
GAAGCACCATGCTTCTATTT+TGG 0.216579 4_1:-86434210 Msa0581090:CDS
TGAGATCAGTGTTTGGGTTT+TGG 0.228710 4_1:+86433718 None:intergenic
TCTACTAATGTTGGCTTCAT+AGG 0.275135 4_1:-86434884 Msa0581090:CDS
TTTACGTAGCACGCACTATT+CGG 0.280462 4_1:+86435271 None:intergenic
GAATTGAATTTATTCATATT+CGG 0.325701 4_1:+86435181 None:intergenic
TGAATGGACTCTGGATCATT+TGG 0.356319 4_1:-86434966 Msa0581090:CDS
ACAAGAACAAGTTTGAAGAT+TGG 0.363933 4_1:+86434926 None:intergenic
AAAATGTACTAAAATTGAAC+AGG 0.368682 4_1:-86433546 Msa0581090:three_prime_UTR
GTTGTAGGTAGTCATGGTTA+TGG 0.387360 4_1:-86434188 Msa0581090:CDS
TTTGTTACGACTAAATAGTT+TGG 0.392292 4_1:-86435347 Msa0581090:five_prime_UTR
TTAGCACATACGCTCTTGAA+TGG 0.393024 4_1:-86434982 Msa0581090:CDS
TTACGTAGCACGCACTATTC+GGG 0.393064 4_1:+86435272 None:intergenic
AGCCAGTGAGATCAGTGTTT+GGG 0.402587 4_1:+86433712 None:intergenic
CATGTTGAGTCTATAGAATA+AGG 0.405322 4_1:-86433594 Msa0581090:three_prime_UTR
TTCAAATCGGCCTCCACAAT+AGG 0.409491 4_1:+86434736 None:intergenic
TGGTTTCGACCGGCAAGGAC+AGG 0.411632 4_1:+86433516 None:intergenic
ACATAGAACAAACAACATAA+TGG 0.416195 4_1:+86433617 None:intergenic
ATTAGTAGAAGGAGAAGGTT+TGG 0.417086 4_1:+86434898 None:intergenic
GAGGGTTGGAGCCTTGGAAC+AGG 0.417969 4_1:-86435370 Msa0581090:five_prime_UTR
AACAAGTTTGAAGATTGGAT+TGG 0.418326 4_1:+86434931 None:intergenic
TTGTTGGAGGGTTGGAGCCT+TGG 0.431805 4_1:-86435376 Msa0581090:five_prime_UTR
CAGCCAGTGAGATCAGTGTT+TGG 0.432645 4_1:+86433711 None:intergenic
AAGTAGTAAATTGACATTGT+TGG 0.441391 4_1:-86435392 Msa0581090:five_prime_UTR
TATTAAAATTACCGATCTCT+TGG 0.443273 4_1:+86434669 None:intergenic
AGATTTATTCTGATTGTTGT+GGG 0.444580 4_1:+86433676 None:intergenic
ATGGTTATGGAGCTATAAAA+AGG 0.449333 4_1:-86434175 Msa0581090:intron
ACAAGTTTGAAGATTGGATT+GGG 0.449888 4_1:+86434932 None:intergenic
CCTTCTCCTTCTACTAATGT+TGG 0.462856 4_1:-86434893 Msa0581090:CDS
AATTGACATTGTTGGAGGGT+TGG 0.463915 4_1:-86435384 Msa0581090:five_prime_UTR
ATGAAGCCAACATTAGTAGA+AGG 0.466396 4_1:+86434887 None:intergenic
GGTTTCGACCGGCAAGGACA+GGG 0.491368 4_1:+86433517 None:intergenic
GATACAAGATCTATCTATCA+TGG 0.495254 4_1:-86435056 Msa0581090:exon
CGCTGAGATATTACCTATTG+TGG 0.517301 4_1:-86434749 Msa0581090:CDS
TAGACTTTACTAGCTGGAGC+TGG 0.517595 4_1:+86435314 None:intergenic
TAGTAAATTGACATTGTTGG+AGG 0.522139 4_1:-86435389 Msa0581090:five_prime_UTR
TATTCATATTCGGAGCATCA+AGG 0.545230 4_1:+86435191 None:intergenic
GTCCTTGCCGGTCGAAACCA+TGG 0.545250 4_1:-86433513 Msa0581090:three_prime_UTR
TAATTCTAGACTTTACTAGC+TGG 0.548310 4_1:+86435308 None:intergenic
ATACGCTCTTGAATGGACTC+TGG 0.555617 4_1:-86434975 Msa0581090:CDS
ATAAATACCATGGTTTCGAC+CGG 0.555649 4_1:+86433506 None:intergenic
AAGATTTATTCTGATTGTTG+TGG 0.556092 4_1:+86433675 None:intergenic
AGACGTAGTAGTGGAAGTTG+TGG 0.557524 4_1:-86434270 Msa0581090:CDS
GTTTCGACCGGCAAGGACAG+GGG 0.559730 4_1:+86433518 None:intergenic
GTAGTAGTGGAAGTTGTGGA+TGG 0.560904 4_1:-86434266 Msa0581090:CDS
AGTAAATTGACATTGTTGGA+GGG 0.565691 4_1:-86435388 Msa0581090:five_prime_UTR
AGAAATCTGCACCAAGAGAT+CGG 0.569017 4_1:-86434680 Msa0581090:intron
CCAACATTAGTAGAAGGAGA+AGG 0.571033 4_1:+86434893 None:intergenic
AATGTTGGCTTCATAGGCCC+TGG 0.571494 4_1:-86434878 Msa0581090:intron
GTCGTAACAAACCTGTTCCA+AGG 0.574721 4_1:+86435359 None:intergenic
AACCCAAACACTGATCTCAC+TGG 0.576013 4_1:-86433714 Msa0581090:exon
AAATGTTCTTTGTGATGCTG+TGG 0.577056 4_1:-86434234 Msa0581090:CDS
TTTCGACCGGCAAGGACAGG+GGG 0.595146 4_1:+86433519 None:intergenic
GAGAAGCAAGTGATGGTGGT+CGG 0.595765 4_1:-86435022 Msa0581090:CDS
AAATGTACTAAAATTGAACA+GGG 0.597326 4_1:-86433545 Msa0581090:three_prime_UTR
TCAGGTAAAAGACGTAGTAG+TGG 0.600049 4_1:-86434279 Msa0581090:intron
ATTCATATTCGGAGCATCAA+GGG 0.601352 4_1:+86435192 None:intergenic
ACTAACTATGAGAGAACAAG+TGG 0.604787 4_1:+86435154 None:intergenic
TTCAGAGAAGCAAGTGATGG+TGG 0.623921 4_1:-86435026 Msa0581090:CDS
CTACAACCAAAATAGAAGCA+TGG 0.624553 4_1:+86434204 None:intergenic
TACCATGGTTTCGACCGGCA+AGG 0.626674 4_1:+86433511 None:intergenic
ACAAAATAAAATAAATACCA+TGG 0.633838 4_1:+86433496 None:intergenic
AGTTTCAGAGAAGCAAGTGA+TGG 0.653690 4_1:-86435029 Msa0581090:CDS
TGAGATATTACCTATTGTGG+AGG 0.658611 4_1:-86434746 Msa0581090:CDS
CACAATAGGTAATATCTCAG+CGG 0.686848 4_1:+86434750 None:intergenic
AATGTACTAAAATTGAACAG+GGG 0.730889 4_1:-86433544 Msa0581090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATTATTAATTGTTAA+TGG + chr4_1:86433712-86433731 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr4_1:86435332-86435351 Msa0581090:five_prime_UTR 10.0%
!! TACTTATTATTAATTGTTAA+TGG + chr4_1:86433712-86433731 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr4_1:86435332-86435351 Msa0581090:five_prime_UTR 10.0%
!!! TTCATTATTAGTATTTTTTG+TGG - chr4_1:86433591-86433610 Msa0581090:three_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr4_1:86433644-86433663 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr4_1:86434174-86434193 Msa0581090:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr4_1:86434375-86434394 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr4_1:86435263-86435282 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr4_1:86435329-86435348 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr4_1:86435333-86435352 Msa0581090:five_prime_UTR 15.0%
!!! TTCATTATTAGTATTTTTTG+TGG - chr4_1:86433591-86433610 Msa0581090:three_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr4_1:86433644-86433663 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr4_1:86434174-86434193 Msa0581090:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr4_1:86434375-86434394 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr4_1:86435263-86435282 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr4_1:86435329-86435348 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr4_1:86435333-86435352 Msa0581090:five_prime_UTR 15.0%
!!! TAATAATGAAGCATTTGAAT+TGG + chr4_1:86433581-86433600 None:intergenic 20.0%
!! ATATATATACAAACATACCA+GGG + chr4_1:86433964-86433983 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr4_1:86433965-86433984 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr4_1:86434803-86434822 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr4_1:86435276-86435295 Msa0581090:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr4_1:86435277-86435296 Msa0581090:five_prime_UTR 20.0%
!!! TAATAATGAAGCATTTGAAT+TGG + chr4_1:86433581-86433600 None:intergenic 20.0%
!! ATATATATACAAACATACCA+GGG + chr4_1:86433964-86433983 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr4_1:86433965-86433984 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr4_1:86434803-86434822 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr4_1:86435276-86435295 Msa0581090:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr4_1:86435277-86435296 Msa0581090:five_prime_UTR 20.0%
! AAGTAGTAAATTGACATTGT+TGG - chr4_1:86433430-86433449 Msa0581090:three_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG - chr4_1:86433475-86433494 Msa0581090:three_prime_UTR 25.0%
! TTGTAACAATGTTTATTCAG+CGG - chr4_1:86434046-86434065 Msa0581090:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr4_1:86434156-86434175 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr4_1:86434525-86434544 Msa0581090:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr4_1:86434734-86434753 Msa0581090:CDS 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr4_1:86435149-86435168 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr4_1:86435150-86435169 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr4_1:86435159-86435178 Msa0581090:five_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG + chr4_1:86435208-86435227 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr4_1:86435278-86435297 Msa0581090:five_prime_UTR 25.0%
! AAGTAGTAAATTGACATTGT+TGG - chr4_1:86433430-86433449 Msa0581090:three_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG - chr4_1:86433475-86433494 Msa0581090:three_prime_UTR 25.0%
! TTGTAACAATGTTTATTCAG+CGG - chr4_1:86434046-86434065 Msa0581090:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr4_1:86434156-86434175 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr4_1:86434525-86434544 Msa0581090:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr4_1:86434734-86434753 Msa0581090:CDS 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr4_1:86435149-86435168 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr4_1:86435150-86435169 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr4_1:86435159-86435178 Msa0581090:five_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG + chr4_1:86435208-86435227 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr4_1:86435278-86435297 Msa0581090:five_prime_UTR 25.0%
TAGTAAATTGACATTGTTGG+AGG - chr4_1:86433433-86433452 Msa0581090:three_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG - chr4_1:86433434-86433453 Msa0581090:three_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG + chr4_1:86433517-86433536 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG - chr4_1:86433766-86433785 Msa0581090:CDS 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr4_1:86433893-86433912 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr4_1:86433894-86433913 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr4_1:86433899-86433918 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr4_1:86434047-86434066 Msa0581090:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr4_1:86434102-86434121 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr4_1:86434281-86434300 Msa0581090:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr4_1:86434288-86434307 Msa0581090:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr4_1:86434411-86434430 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr4_1:86434490-86434509 Msa0581090:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr4_1:86434647-86434666 Msa0581090:intron 30.0%
AATAGCATAGCATGATAACT+GGG + chr4_1:86434690-86434709 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr4_1:86434947-86434966 Msa0581090:CDS 30.0%
CCAATATAATCTCAAACGTA+GGG - chr4_1:86434948-86434967 Msa0581090:CDS 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr4_1:86435228-86435247 Msa0581090:five_prime_UTR 30.0%
TAGTAAATTGACATTGTTGG+AGG - chr4_1:86433433-86433452 Msa0581090:three_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG - chr4_1:86433434-86433453 Msa0581090:three_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG + chr4_1:86433517-86433536 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG - chr4_1:86433766-86433785 Msa0581090:CDS 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr4_1:86433893-86433912 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr4_1:86433894-86433913 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr4_1:86433899-86433918 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr4_1:86434047-86434066 Msa0581090:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr4_1:86434102-86434121 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr4_1:86434281-86434300 Msa0581090:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr4_1:86434288-86434307 Msa0581090:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr4_1:86434411-86434430 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr4_1:86434490-86434509 Msa0581090:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr4_1:86434647-86434666 Msa0581090:intron 30.0%
AATAGCATAGCATGATAACT+GGG + chr4_1:86434690-86434709 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr4_1:86434947-86434966 Msa0581090:CDS 30.0%
CCAATATAATCTCAAACGTA+GGG - chr4_1:86434948-86434967 Msa0581090:CDS 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr4_1:86435228-86435247 Msa0581090:five_prime_UTR 30.0%
! ATTCATATTCGGAGCATCAA+GGG + chr4_1:86433633-86433652 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr4_1:86433634-86433653 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr4_1:86433671-86433690 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr4_1:86433927-86433946 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr4_1:86433938-86433957 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr4_1:86433938-86433957 Msa0581090:intron 35.0%
CACAATAGGTAATATCTCAG+CGG + chr4_1:86434075-86434094 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr4_1:86434076-86434095 Msa0581090:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr4_1:86434257-86434276 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr4_1:86434258-86434277 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr4_1:86434403-86434422 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr4_1:86434588-86434607 Msa0581090:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr4_1:86434621-86434640 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr4_1:86434619-86434638 Msa0581090:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr4_1:86434628-86434647 Msa0581090:intron 35.0%
CAATAGCATAGCATGATAAC+TGG + chr4_1:86434691-86434710 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr4_1:86434711-86434730 Msa0581090:CDS 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr4_1:86434951-86434970 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr4_1:86435012-86435031 Msa0581090:CDS 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr4_1:86435013-86435032 Msa0581090:CDS 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr4_1:86435319-86435338 None:intergenic 35.0%
! ATTCATATTCGGAGCATCAA+GGG + chr4_1:86433633-86433652 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr4_1:86433634-86433653 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr4_1:86433671-86433690 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr4_1:86433927-86433946 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr4_1:86433938-86433957 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr4_1:86433938-86433957 Msa0581090:intron 35.0%
CACAATAGGTAATATCTCAG+CGG + chr4_1:86434075-86434094 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr4_1:86434076-86434095 Msa0581090:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr4_1:86434257-86434276 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr4_1:86434258-86434277 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr4_1:86434403-86434422 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr4_1:86434588-86434607 Msa0581090:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr4_1:86434621-86434640 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr4_1:86434619-86434638 Msa0581090:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr4_1:86434628-86434647 Msa0581090:intron 35.0%
CAATAGCATAGCATGATAAC+TGG + chr4_1:86434691-86434710 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr4_1:86434711-86434730 Msa0581090:CDS 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr4_1:86434951-86434970 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr4_1:86435012-86435031 Msa0581090:CDS 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr4_1:86435013-86435032 Msa0581090:CDS 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr4_1:86435319-86435338 None:intergenic 35.0%
AATTGACATTGTTGGAGGGT+TGG - chr4_1:86433438-86433457 Msa0581090:three_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG + chr4_1:86433554-86433573 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr4_1:86433793-86433812 Msa0581090:intron 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr4_1:86433840-86433859 Msa0581090:intron 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr4_1:86433856-86433875 Msa0581090:intron 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr4_1:86433932-86433951 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr4_1:86433929-86433948 Msa0581090:intron 40.0%
CGCTGAGATATTACCTATTG+TGG - chr4_1:86434073-86434092 Msa0581090:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr4_1:86434142-86434161 Msa0581090:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr4_1:86434244-86434263 Msa0581090:CDS 40.0%
CCCAATCCATAGGAATATAG+AGG - chr4_1:86434254-86434273 Msa0581090:CDS 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr4_1:86434259-86434278 Msa0581090:CDS 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr4_1:86434263-86434282 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr4_1:86434264-86434283 Msa0581090:CDS 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr4_1:86434267-86434286 Msa0581090:CDS 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr4_1:86434358-86434377 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr4_1:86434543-86434562 Msa0581090:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr4_1:86434612-86434631 Msa0581090:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr4_1:86434634-86434653 Msa0581090:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr4_1:86435023-86435042 Msa0581090:CDS 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr4_1:86435107-86435126 None:intergenic 40.0%
AATTGACATTGTTGGAGGGT+TGG - chr4_1:86433438-86433457 Msa0581090:three_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG + chr4_1:86433554-86433573 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr4_1:86433793-86433812 Msa0581090:intron 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr4_1:86433840-86433859 Msa0581090:intron 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr4_1:86433856-86433875 Msa0581090:intron 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr4_1:86433932-86433951 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr4_1:86433929-86433948 Msa0581090:intron 40.0%
CGCTGAGATATTACCTATTG+TGG - chr4_1:86434073-86434092 Msa0581090:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr4_1:86434142-86434161 Msa0581090:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr4_1:86434244-86434263 Msa0581090:CDS 40.0%
CCCAATCCATAGGAATATAG+AGG - chr4_1:86434254-86434273 Msa0581090:CDS 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr4_1:86434259-86434278 Msa0581090:CDS 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr4_1:86434263-86434282 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr4_1:86434264-86434283 Msa0581090:CDS 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr4_1:86434267-86434286 Msa0581090:CDS 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr4_1:86434358-86434377 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr4_1:86434543-86434562 Msa0581090:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr4_1:86434612-86434631 Msa0581090:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr4_1:86434634-86434653 Msa0581090:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr4_1:86435023-86435042 Msa0581090:CDS 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr4_1:86435107-86435126 None:intergenic 40.0%
GTCGTAACAAACCTGTTCCA+AGG + chr4_1:86433466-86433485 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG + chr4_1:86433502-86433521 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG + chr4_1:86433511-86433530 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG + chr4_1:86433553-86433572 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr4_1:86433796-86433815 Msa0581090:intron 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr4_1:86433847-86433866 Msa0581090:intron 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr4_1:86434089-86434108 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr4_1:86434352-86434371 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr4_1:86434552-86434571 Msa0581090:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr4_1:86434556-86434575 Msa0581090:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr4_1:86434878-86434897 Msa0581090:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr4_1:86434903-86434922 Msa0581090:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr4_1:86435108-86435127 Msa0581090:five_prime_UTR 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr4_1:86435113-86435132 None:intergenic 45.0%
GTCGTAACAAACCTGTTCCA+AGG + chr4_1:86433466-86433485 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG + chr4_1:86433502-86433521 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG + chr4_1:86433511-86433530 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG + chr4_1:86433553-86433572 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr4_1:86433796-86433815 Msa0581090:intron 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr4_1:86433847-86433866 Msa0581090:intron 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr4_1:86434089-86434108 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr4_1:86434352-86434371 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr4_1:86434552-86434571 Msa0581090:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr4_1:86434556-86434575 Msa0581090:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr4_1:86434878-86434897 Msa0581090:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr4_1:86434903-86434922 Msa0581090:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr4_1:86435108-86435127 Msa0581090:five_prime_UTR 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr4_1:86435113-86435132 None:intergenic 45.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr4_1:86433800-86433819 Msa0581090:intron 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr4_1:86433944-86433963 Msa0581090:intron 50.0%
CTGGACACACCTTCAACCTA+AGG - chr4_1:86434897-86434916 Msa0581090:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr4_1:86435114-86435133 None:intergenic 50.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr4_1:86433800-86433819 Msa0581090:intron 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr4_1:86433944-86433963 Msa0581090:intron 50.0%
CTGGACACACCTTCAACCTA+AGG - chr4_1:86434897-86434916 Msa0581090:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr4_1:86435114-86435133 None:intergenic 50.0%
TTGTTGGAGGGTTGGAGCCT+TGG - chr4_1:86433446-86433465 Msa0581090:three_prime_UTR 55.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr4_1:86434909-86434928 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr4_1:86434916-86434935 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr4_1:86435314-86435333 None:intergenic 55.0%
TTGTTGGAGGGTTGGAGCCT+TGG - chr4_1:86433446-86433465 Msa0581090:three_prime_UTR 55.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr4_1:86434909-86434928 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr4_1:86434916-86434935 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr4_1:86435314-86435333 None:intergenic 55.0%
GAGGGTTGGAGCCTTGGAAC+AGG - chr4_1:86433452-86433471 Msa0581090:three_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr4_1:86435306-86435325 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr4_1:86435307-86435326 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr4_1:86435308-86435327 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr4_1:86435309-86435328 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr4_1:86435309-86435328 Msa0581090:five_prime_UTR 60.0%
GAGGGTTGGAGCCTTGGAAC+AGG - chr4_1:86433452-86433471 Msa0581090:three_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr4_1:86435306-86435325 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr4_1:86435307-86435326 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr4_1:86435308-86435327 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr4_1:86435309-86435328 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr4_1:86435309-86435328 Msa0581090:five_prime_UTR 60.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr4_1:86435297-86435316 Msa0581090:five_prime_UTR 70.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr4_1:86435297-86435316 Msa0581090:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86433418 86435426 86433418 ID=Msa0581090;Name=Msa0581090
chr4_1 mRNA 86433418 86435426 86433418 ID=Msa0581090-mRNA-1;Parent=Msa0581090;Name=Msa0581090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=346|1|1|1|0.75|0.6|5|305|162
chr4_1 exon 86433418 86433810 86433418 ID=Msa0581090-mRNA-1:exon:31969;Parent=Msa0581090-mRNA-1
chr4_1 exon 86434176 86434297 86434176 ID=Msa0581090-mRNA-1:exon:31968;Parent=Msa0581090-mRNA-1
chr4_1 exon 86434681 86434778 86434681 ID=Msa0581090-mRNA-1:exon:31967;Parent=Msa0581090-mRNA-1
chr4_1 exon 86434879 86435254 86434879 ID=Msa0581090-mRNA-1:exon:31966;Parent=Msa0581090-mRNA-1
chr4_1 exon 86435276 86435426 86435276 ID=Msa0581090-mRNA-1:exon:31965;Parent=Msa0581090-mRNA-1
chr4_1 five_prime_UTR 86435276 86435426 86435276 ID=Msa0581090-mRNA-1:five_prime_utr;Parent=Msa0581090-mRNA-1
chr4_1 five_prime_UTR 86435060 86435254 86435060 ID=Msa0581090-mRNA-1:five_prime_utr;Parent=Msa0581090-mRNA-1
chr4_1 CDS 86434879 86435059 86434879 ID=Msa0581090-mRNA-1:cds;Parent=Msa0581090-mRNA-1
chr4_1 CDS 86434681 86434778 86434681 ID=Msa0581090-mRNA-1:cds;Parent=Msa0581090-mRNA-1
chr4_1 CDS 86434176 86434297 86434176 ID=Msa0581090-mRNA-1:cds;Parent=Msa0581090-mRNA-1
chr4_1 CDS 86433723 86433810 86433723 ID=Msa0581090-mRNA-1:cds;Parent=Msa0581090-mRNA-1
chr4_1 three_prime_UTR 86433418 86433722 86433418 ID=Msa0581090-mRNA-1:three_prime_utr;Parent=Msa0581090-mRNA-1
Gene Sequence

>Msa0581090

ATGGCTCAAGTTTCAGAGAAGCAAGTGATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCGGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa0581090

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*