AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404530 MtrunA17_Chr3g0094361 97.778 270 4 1 1 268 1 270 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404530 AT4G29070.1 54.478 268 111 6 1 267 1 258 6.87e-98 287
Msa0404530 AT4G29070.2 54.478 268 111 6 1 267 1 258 6.87e-98 287

Find 104 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGAATCTGGAGTAAATT+TGG 0.151133 3_2:+36472268 None:intergenic
TACAAGACAATGTGCATTAA+TGG 0.165763 3_2:-36471738 Msa0404530:intron
AAGAATGAAAATTTAGTAAA+TGG 0.192895 3_2:-36471481 Msa0404530:exon
AGGCAATCTTGAAGATATTA+AGG 0.239033 3_2:+36471395 None:intergenic
CGTTGTTGGAAAAGATAATA+TGG 0.290049 3_2:-36472072 Msa0404530:CDS
TCACAGTTGTTTCCTAGATA+TGG 0.298208 3_2:-36471981 Msa0404530:CDS
CTCCTTTAGTACGCAAAATA+TGG 0.299910 3_2:+36471781 None:intergenic
ACAATGAACTTGGGGTTTCT+TGG 0.306848 3_2:-36472398 Msa0404530:CDS
ATTCACAATTTGTAGCTCTT+AGG 0.313226 3_2:+36471452 None:intergenic
GATAGAGTTTGAAGGAGAAT+TGG 0.320944 3_2:+36473072 None:intergenic
TCTTTCCCACTTGACCAATT+AGG 0.322806 3_2:+36471945 None:intergenic
AGAATGAAAATTTAGTAAAT+GGG 0.334127 3_2:-36471480 Msa0404530:exon
GACATTACTGTGGACCTAAT+TGG 0.334471 3_2:-36471959 Msa0404530:CDS
ACTAAATGAGTCGCTGAATC+TGG 0.356726 3_2:+36472257 None:intergenic
GTTTCTTGGTGGCATACCTT+GGG 0.365840 3_2:-36472384 Msa0404530:CDS
TTTGAGGACTTGCTTTCAAA+TGG 0.373399 3_2:-36472956 Msa0404530:five_prime_UTR
GGACGATCATTGATCCAGTT+TGG 0.376412 3_2:-36471545 Msa0404530:CDS
GGTTTCTTGGTGGCATACCT+TGG 0.379275 3_2:-36472385 Msa0404530:CDS
TGGCTACCCCTTTGCGCTTT+AGG 0.380144 3_2:-36472052 Msa0404530:CDS
GATGGCTAAGCAATTTGAAA+TGG 0.388789 3_2:-36471523 Msa0404530:CDS
CTTTAGGCCTTATGTTTGTA+AGG 0.395654 3_2:-36472036 Msa0404530:CDS
AATTGCTTAGCCATCCAAAC+TGG 0.398532 3_2:+36471531 None:intergenic
GTTAATGATCCCAAGTTGTC+AGG 0.399483 3_2:-36472209 Msa0404530:CDS
TGTAAGGTTCCATGGCATAC+AGG 0.400157 3_2:-36472020 Msa0404530:CDS
CAAAATCGCGAAAACGTTGT+TGG 0.403825 3_2:-36472086 Msa0404530:CDS
AACTCTTTATTGATCGTAGT+TGG 0.408341 3_2:+36472122 None:intergenic
CTAAATGTATTGCTGAATCT+TGG 0.410023 3_2:+36472345 None:intergenic
CCACAGTAATGTCCATATCT+AGG 0.418492 3_2:+36471969 None:intergenic
GGGACAAGCGTCCAATTGAT+TGG 0.422404 3_2:-36471905 Msa0404530:CDS
CTCTGAGAAATATGTATTTG+AGG 0.424162 3_2:-36472972 Msa0404530:five_prime_UTR
TGCTGCTATTGCCATGATAT+AGG 0.424949 3_2:-36471873 Msa0404530:CDS
CCTTCCTTTCGTTATTTCCA+TGG 0.427510 3_2:-36472175 Msa0404530:CDS
GCTGAATCTGGAGTAAATTT+GGG 0.427880 3_2:+36472269 None:intergenic
GCAATTTGAAATGGAGGAGT+TGG 0.430368 3_2:-36471514 Msa0404530:CDS
CAAGCGTCCAATTGATTGGT+TGG 0.431275 3_2:-36471901 Msa0404530:CDS
CATAAGGCCTAAAGCGCAAA+GGG 0.438079 3_2:+36472045 None:intergenic
TTTCTCAGAGTTAAAACTAA+AGG 0.438129 3_2:+36472985 None:intergenic
CAAGTCAAACATGAATCATC+TGG 0.443608 3_2:-36472299 Msa0404530:CDS
CTTACGAGATTCGTTCTGTA+AGG 0.444009 3_2:+36471581 None:intergenic
CAAGGGCCACCCTGACAACT+TGG 0.449292 3_2:+36472199 None:intergenic
AATTGGTCAAGTGGGAAAGA+TGG 0.457230 3_2:-36471942 Msa0404530:CDS
ATTGGTCAAGTGGGAAAGAT+GGG 0.460984 3_2:-36471941 Msa0404530:CDS
CTTATGTTTGTAAGGTTCCA+TGG 0.465114 3_2:-36472028 Msa0404530:CDS
AATCAAATGATAGAGTTTGA+AGG 0.478477 3_2:+36473064 None:intergenic
TTGAGGACTTGCTTTCAAAT+GGG 0.483591 3_2:-36472955 Msa0404530:intron
TTTCCATGGACAAATAAAGA+TGG 0.485141 3_2:-36472161 Msa0404530:CDS
CAGTAATCCAACCAATCAAT+TGG 0.489028 3_2:+36471894 None:intergenic
TCTCCATCTTTATTTGTCCA+TGG 0.491763 3_2:+36472158 None:intergenic
TAACATAATATTTAGTGTTG+TGG 0.491903 3_2:-36472425 Msa0404530:five_prime_UTR
GGCAATCTTGAAGATATTAA+GGG 0.493765 3_2:+36471396 None:intergenic
TTGTGGTGGCACAATGAACT+TGG 0.497520 3_2:-36472408 Msa0404530:exon
ATGAACTTGGGGTTTCTTGG+TGG 0.498099 3_2:-36472395 Msa0404530:CDS
GCAAAATATGGCGATTCTCT+AGG 0.500333 3_2:+36471793 None:intergenic
CATGGAACCTTACAAACATA+AGG 0.504158 3_2:+36472029 None:intergenic
ACGGAAAGAGGGTCGATTTG+TGG 0.506575 3_2:+36473131 None:intergenic
CATAATATTTAGTGTTGTGG+TGG 0.511970 3_2:-36472422 Msa0404530:five_prime_UTR
GAGTATCGTATCCTATATCA+TGG 0.517155 3_2:+36471862 None:intergenic
GAATGAAAATTTAGTAAATG+GGG 0.519903 3_2:-36471479 Msa0404530:exon
GTAAGGTTCCATGGCATACA+GGG 0.522334 3_2:-36472019 Msa0404530:CDS
ATTCTCTAGGCACTCAAGAA+AGG 0.522803 3_2:+36471806 None:intergenic
TGTGGTGGCACAATGAACTT+GGG 0.524930 3_2:-36472407 Msa0404530:exon
ATGTGCAAATTTGCACATGA+TGG 0.527273 3_2:+36471148 None:intergenic
GATCATTGATCCAGTTTGGA+TGG 0.540863 3_2:-36471541 Msa0404530:CDS
TTTCGACCCGTGTGACGCAC+GGG 0.544446 3_2:-36471267 Msa0404530:three_prime_UTR
CTCGTAAGTCTACAACAGTC+AGG 0.550370 3_2:-36471566 Msa0404530:CDS
CTTTCGACCCGTGTGACGCA+CGG 0.551765 3_2:-36471268 Msa0404530:three_prime_UTR
ACTTGTGAATGTGATTCTTG+TGG 0.552138 3_2:+36473103 None:intergenic
CTTGTGGTGGAGACGGAAAG+AGG 0.554065 3_2:+36473119 None:intergenic
AATATCTTCAAGATTGCCTG+TGG 0.561169 3_2:-36471391 Msa0404530:three_prime_UTR
TTGGTCAAGTGGGAAAGATG+GGG 0.571014 3_2:-36471940 Msa0404530:CDS
GGCTAAGCAATTTGAAATGG+AGG 0.576092 3_2:-36471520 Msa0404530:CDS
TGTAAAGATGAGCAACGTGC+GGG 0.578466 3_2:+36471757 None:intergenic
GATAGGACCCGTGCGTCACA+CGG 0.581738 3_2:+36471260 None:intergenic
CGATCAATAAAGAGTTGAAG+AGG 0.584391 3_2:-36472115 Msa0404530:CDS
TGTGGACCTAATTGGTCAAG+TGG 0.591356 3_2:-36471951 Msa0404530:CDS
TGTGAATGTGATTCTTGTGG+TGG 0.594212 3_2:+36473106 None:intergenic
TGTGATTCTTGTGGTGGAGA+CGG 0.594696 3_2:+36473112 None:intergenic
AAGGGCCACCCTGACAACTT+GGG 0.599062 3_2:+36472200 None:intergenic
GCTCTAACCCCTGTATGCCA+TGG 0.599360 3_2:+36472011 None:intergenic
TTGTCCATGGAAATAACGAA+AGG 0.600344 3_2:+36472171 None:intergenic
TTACTCCGAGGTTTAACCCA+AGG 0.601608 3_2:+36472368 None:intergenic
AATGAAAATTTAGTAAATGG+GGG 0.602393 3_2:-36471478 Msa0404530:exon
ACATAAGGCCTAAAGCGCAA+AGG 0.604279 3_2:+36472044 None:intergenic
CAAGCTCATTATACACCCAC+AGG 0.605164 3_2:+36471375 None:intergenic
TGATCATTATAACAGTCGAT+AGG 0.606275 3_2:+36471243 None:intergenic
TTAATGATCCCAAGTTGTCA+GGG 0.607070 3_2:-36472208 Msa0404530:CDS
CCATGGAAATAACGAAAGGA+AGG 0.609777 3_2:+36472175 None:intergenic
ATATCTTCAAGATTGCCTGT+GGG 0.631959 3_2:-36471390 Msa0404530:three_prime_UTR
AAATAACGAAAGGAAGGACA+AGG 0.631990 3_2:+36472181 None:intergenic
CCTAGATATGGACATTACTG+TGG 0.633496 3_2:-36471969 Msa0404530:CDS
GCTGAATCTTGGTTACTCCG+AGG 0.640091 3_2:+36472356 None:intergenic
TTGTGGTGGAGACGGAAAGA+GGG 0.641991 3_2:+36473120 None:intergenic
GCATACCTTGGGTTAAACCT+CGG 0.642539 3_2:-36472373 Msa0404530:CDS
TGAAGATATTAAGGGTGACA+AGG 0.644485 3_2:+36471404 None:intergenic
TGGTCAAGTGGGAAAGATGG+GGG 0.645782 3_2:-36471939 Msa0404530:CDS
GTGGACCTAATTGGTCAAGT+GGG 0.651606 3_2:-36471950 Msa0404530:CDS
GTGGTGGCACAATGAACTTG+GGG 0.655593 3_2:-36472406 Msa0404530:exon
TTGTAAAGATGAGCAACGTG+CGG 0.657865 3_2:+36471756 None:intergenic
TAAGGTTCCATGGCATACAG+GGG 0.665512 3_2:-36472018 Msa0404530:CDS
ATAGGACCCGTGCGTCACAC+GGG 0.666473 3_2:+36471261 None:intergenic
GACTTGCGAAGTAAACGCAG+TGG 0.668908 3_2:+36472316 None:intergenic
ATGATCCCAAGTTGTCAGGG+TGG 0.699677 3_2:-36472205 Msa0404530:CDS
AATAACGAAAGGAAGGACAA+GGG 0.717040 3_2:+36472182 None:intergenic
ATAAGGCCTAAAGCGCAAAG+GGG 0.758660 3_2:+36472046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGAACAAAAATTTT+AGG - chr3_2:36471520-36471539 Msa0404530:CDS 10.0%
!! AATCAATCATATTATATATA+TGG + chr3_2:36471774-36471793 None:intergenic 10.0%
!!! TAAATATGAACAAAAATTTT+AGG - chr3_2:36471520-36471539 Msa0404530:CDS 10.0%
!! AATCAATCATATTATATATA+TGG + chr3_2:36471774-36471793 None:intergenic 10.0%
!!! ACTAATGATTTACAATTTTA+GGG - chr3_2:36471733-36471752 Msa0404530:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG + chr3_2:36472758-36472777 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG - chr3_2:36472760-36472779 Msa0404530:intron 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG - chr3_2:36472761-36472780 Msa0404530:intron 15.0%
!!! ACTAATGATTTACAATTTTA+GGG - chr3_2:36471733-36471752 Msa0404530:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG + chr3_2:36472758-36472777 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG - chr3_2:36472760-36472779 Msa0404530:intron 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG - chr3_2:36472761-36472780 Msa0404530:intron 15.0%
!!! AAATTTTATATGTTGCTGTT+AGG - chr3_2:36471551-36471570 Msa0404530:CDS 20.0%
!! ACTAAAATTTACAATTTCAG+TGG + chr3_2:36471610-36471629 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG - chr3_2:36471694-36471713 Msa0404530:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG - chr3_2:36471732-36471751 Msa0404530:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG - chr3_2:36471816-36471835 Msa0404530:CDS 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG - chr3_2:36472614-36472633 Msa0404530:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG - chr3_2:36472762-36472781 Msa0404530:intron 20.0%
!! AATGAAAATTTAGTAAATGG+GGG - chr3_2:36472763-36472782 Msa0404530:intron 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG + chr3_2:36472900-36472919 None:intergenic 20.0%
!!! AAATTTTATATGTTGCTGTT+AGG - chr3_2:36471551-36471570 Msa0404530:CDS 20.0%
!! ACTAAAATTTACAATTTCAG+TGG + chr3_2:36471610-36471629 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG - chr3_2:36471694-36471713 Msa0404530:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG - chr3_2:36471732-36471751 Msa0404530:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG - chr3_2:36471816-36471835 Msa0404530:CDS 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG - chr3_2:36472614-36472633 Msa0404530:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG - chr3_2:36472762-36472781 Msa0404530:intron 20.0%
!! AATGAAAATTTAGTAAATGG+GGG - chr3_2:36472763-36472782 Msa0404530:intron 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG + chr3_2:36472900-36472919 None:intergenic 20.0%
! AATCAAATGATAGAGTTTGA+AGG + chr3_2:36471180-36471199 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG + chr3_2:36471259-36471278 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG + chr3_2:36471432-36471451 None:intergenic 25.0%
! GTCACACATTATATATTTGT+TGG - chr3_2:36471628-36471647 Msa0404530:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG - chr3_2:36471664-36471683 Msa0404530:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG - chr3_2:36471710-36471729 Msa0404530:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG - chr3_2:36472555-36472574 Msa0404530:intron 25.0%
! AATCAAATGATAGAGTTTGA+AGG + chr3_2:36471180-36471199 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG + chr3_2:36471259-36471278 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG + chr3_2:36471432-36471451 None:intergenic 25.0%
! GTCACACATTATATATTTGT+TGG - chr3_2:36471628-36471647 Msa0404530:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG - chr3_2:36471664-36471683 Msa0404530:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG - chr3_2:36471710-36471729 Msa0404530:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG - chr3_2:36472555-36472574 Msa0404530:intron 25.0%
! CTCTGAGAAATATGTATTTG+AGG - chr3_2:36471269-36471288 Msa0404530:three_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG - chr3_2:36471392-36471411 Msa0404530:three_prime_UTR 30.0%
TCCATTCTCTATGATGAAAT+TGG + chr3_2:36471396-36471415 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG - chr3_2:36471819-36471838 Msa0404530:CDS 30.0%
CTAAATGTATTGCTGAATCT+TGG + chr3_2:36471899-36471918 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG - chr3_2:36472080-36472099 Msa0404530:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG + chr3_2:36472122-36472141 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG - chr3_2:36472169-36472188 Msa0404530:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG - chr3_2:36472503-36472522 Msa0404530:intron 30.0%
GAGAAAAAAAACAAAGTCAG+CGG + chr3_2:36472607-36472626 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG - chr3_2:36472618-36472637 Msa0404530:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG + chr3_2:36472792-36472811 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG - chr3_2:36472814-36472833 Msa0404530:intron 30.0%
GGCAATCTTGAAGATATTAA+GGG + chr3_2:36472848-36472867 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG + chr3_2:36472849-36472868 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG + chr3_2:36473001-36473020 None:intergenic 30.0%
! CTCTGAGAAATATGTATTTG+AGG - chr3_2:36471269-36471288 Msa0404530:three_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG - chr3_2:36471392-36471411 Msa0404530:three_prime_UTR 30.0%
TCCATTCTCTATGATGAAAT+TGG + chr3_2:36471396-36471415 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG - chr3_2:36471819-36471838 Msa0404530:CDS 30.0%
CTAAATGTATTGCTGAATCT+TGG + chr3_2:36471899-36471918 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG - chr3_2:36472080-36472099 Msa0404530:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG + chr3_2:36472122-36472141 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG - chr3_2:36472169-36472188 Msa0404530:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG - chr3_2:36472503-36472522 Msa0404530:intron 30.0%
GAGAAAAAAAACAAAGTCAG+CGG + chr3_2:36472607-36472626 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG - chr3_2:36472618-36472637 Msa0404530:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG + chr3_2:36472792-36472811 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG - chr3_2:36472814-36472833 Msa0404530:intron 30.0%
GGCAATCTTGAAGATATTAA+GGG + chr3_2:36472848-36472867 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG + chr3_2:36472849-36472868 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG + chr3_2:36473001-36473020 None:intergenic 30.0%
ACTTGTGAATGTGATTCTTG+TGG + chr3_2:36471141-36471160 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG + chr3_2:36471172-36471191 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG - chr3_2:36471285-36471304 Msa0404530:three_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG - chr3_2:36471286-36471305 Msa0404530:three_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG - chr3_2:36471306-36471325 Msa0404530:three_prime_UTR 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG - chr3_2:36471792-36471811 Msa0404530:CDS 35.0%
CAAGTCAAACATGAATCATC+TGG - chr3_2:36471942-36471961 Msa0404530:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG + chr3_2:36471975-36471994 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG - chr3_2:36472033-36472052 Msa0404530:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG + chr3_2:36472062-36472081 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG + chr3_2:36472063-36472082 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG + chr3_2:36472073-36472092 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG + chr3_2:36472086-36472105 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG - chr3_2:36472126-36472145 Msa0404530:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG - chr3_2:36472205-36472224 Msa0404530:CDS 35.0%
CATGGAACCTTACAAACATA+AGG + chr3_2:36472215-36472234 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG - chr3_2:36472213-36472232 Msa0404530:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG - chr3_2:36472260-36472279 Msa0404530:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG + chr3_2:36472350-36472369 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG + chr3_2:36472382-36472401 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG + chr3_2:36472463-36472482 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG - chr3_2:36472718-36472737 Msa0404530:intron 35.0%
TGAAGATATTAAGGGTGACA+AGG + chr3_2:36472840-36472859 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG - chr3_2:36472850-36472869 Msa0404530:intron 35.0%
ATATCTTCAAGATTGCCTGT+GGG - chr3_2:36472851-36472870 Msa0404530:intron 35.0%
ATGTGCAAATTTGCACATGA+TGG + chr3_2:36473096-36473115 None:intergenic 35.0%
ACTTGTGAATGTGATTCTTG+TGG + chr3_2:36471141-36471160 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG + chr3_2:36471172-36471191 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG - chr3_2:36471285-36471304 Msa0404530:three_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG - chr3_2:36471286-36471305 Msa0404530:three_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG - chr3_2:36471306-36471325 Msa0404530:three_prime_UTR 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG - chr3_2:36471792-36471811 Msa0404530:CDS 35.0%
CAAGTCAAACATGAATCATC+TGG - chr3_2:36471942-36471961 Msa0404530:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG + chr3_2:36471975-36471994 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG - chr3_2:36472033-36472052 Msa0404530:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG + chr3_2:36472062-36472081 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG + chr3_2:36472063-36472082 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG + chr3_2:36472073-36472092 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG + chr3_2:36472086-36472105 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG - chr3_2:36472126-36472145 Msa0404530:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG - chr3_2:36472205-36472224 Msa0404530:CDS 35.0%
CATGGAACCTTACAAACATA+AGG + chr3_2:36472215-36472234 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG - chr3_2:36472213-36472232 Msa0404530:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG - chr3_2:36472260-36472279 Msa0404530:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG + chr3_2:36472350-36472369 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG + chr3_2:36472382-36472401 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG + chr3_2:36472463-36472482 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG - chr3_2:36472718-36472737 Msa0404530:intron 35.0%
TGAAGATATTAAGGGTGACA+AGG + chr3_2:36472840-36472859 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG - chr3_2:36472850-36472869 Msa0404530:intron 35.0%
ATATCTTCAAGATTGCCTGT+GGG - chr3_2:36472851-36472870 Msa0404530:intron 35.0%
ATGTGCAAATTTGCACATGA+TGG + chr3_2:36473096-36473115 None:intergenic 35.0%
TGTGAATGTGATTCTTGTGG+TGG + chr3_2:36471138-36471157 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG + chr3_2:36471426-36471445 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG - chr3_2:36471843-36471862 Msa0404530:CDS 40.0%
! CGCTGAATCTGGAGTAAATT+TGG + chr3_2:36471976-36471995 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG + chr3_2:36471987-36472006 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG - chr3_2:36472032-36472051 Msa0404530:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG + chr3_2:36472069-36472088 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG - chr3_2:36472066-36472085 Msa0404530:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG - chr3_2:36472155-36472174 Msa0404530:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG + chr3_2:36472275-36472294 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG - chr3_2:36472272-36472291 Msa0404530:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG - chr3_2:36472282-36472301 Msa0404530:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG + chr3_2:36472299-36472318 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG - chr3_2:36472299-36472318 Msa0404530:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG - chr3_2:36472300-36472319 Msa0404530:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG - chr3_2:36472368-36472387 Msa0404530:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG + chr3_2:36472438-36472457 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG + chr3_2:36472451-36472470 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG - chr3_2:36472458-36472477 Msa0404530:intron 40.0%
TTGTAAAGATGAGCAACGTG+CGG + chr3_2:36472488-36472507 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG + chr3_2:36472663-36472682 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG - chr3_2:36472700-36472719 Msa0404530:intron 40.0%
AATTGCTTAGCCATCCAAAC+TGG + chr3_2:36472713-36472732 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG - chr3_2:36472721-36472740 Msa0404530:intron 40.0%
! GCAATTTGAAATGGAGGAGT+TGG - chr3_2:36472727-36472746 Msa0404530:intron 40.0%
TGTGAATGTGATTCTTGTGG+TGG + chr3_2:36471138-36471157 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG + chr3_2:36471426-36471445 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG - chr3_2:36471843-36471862 Msa0404530:CDS 40.0%
! CGCTGAATCTGGAGTAAATT+TGG + chr3_2:36471976-36471995 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG + chr3_2:36471987-36472006 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG - chr3_2:36472032-36472051 Msa0404530:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG + chr3_2:36472069-36472088 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG - chr3_2:36472066-36472085 Msa0404530:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG - chr3_2:36472155-36472174 Msa0404530:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG + chr3_2:36472275-36472294 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG - chr3_2:36472272-36472291 Msa0404530:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG - chr3_2:36472282-36472301 Msa0404530:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG + chr3_2:36472299-36472318 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG - chr3_2:36472299-36472318 Msa0404530:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG - chr3_2:36472300-36472319 Msa0404530:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG - chr3_2:36472368-36472387 Msa0404530:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG + chr3_2:36472438-36472457 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG + chr3_2:36472451-36472470 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG - chr3_2:36472458-36472477 Msa0404530:intron 40.0%
TTGTAAAGATGAGCAACGTG+CGG + chr3_2:36472488-36472507 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG + chr3_2:36472663-36472682 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG - chr3_2:36472700-36472719 Msa0404530:intron 40.0%
AATTGCTTAGCCATCCAAAC+TGG + chr3_2:36472713-36472732 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG - chr3_2:36472721-36472740 Msa0404530:intron 40.0%
! GCAATTTGAAATGGAGGAGT+TGG - chr3_2:36472727-36472746 Msa0404530:intron 40.0%
! TGTGATTCTTGTGGTGGAGA+CGG + chr3_2:36471132-36471151 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG + chr3_2:36471420-36471439 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG - chr3_2:36471833-36471852 Msa0404530:CDS 45.0%
TGTGGTGGCACAATGAACTT+GGG - chr3_2:36471834-36471853 Msa0404530:CDS 45.0%
ATGAACTTGGGGTTTCTTGG+TGG - chr3_2:36471846-36471865 Msa0404530:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG - chr3_2:36471857-36471876 Msa0404530:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG - chr3_2:36471868-36471887 Msa0404530:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG + chr3_2:36471876-36471895 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG + chr3_2:36472198-36472217 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG + chr3_2:36472199-36472218 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG + chr3_2:36472200-36472219 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG - chr3_2:36472221-36472240 Msa0404530:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG - chr3_2:36472222-36472241 Msa0404530:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG - chr3_2:36472223-36472242 Msa0404530:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG - chr3_2:36472290-36472309 Msa0404530:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG - chr3_2:36472291-36472310 Msa0404530:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG - chr3_2:36472301-36472320 Msa0404530:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG - chr3_2:36472315-36472334 Msa0404530:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG - chr3_2:36472316-36472335 Msa0404530:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG - chr3_2:36472340-36472359 Msa0404530:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG + chr3_2:36472487-36472506 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG - chr3_2:36472675-36472694 Msa0404530:intron 45.0%
GGACGATCATTGATCCAGTT+TGG - chr3_2:36472696-36472715 Msa0404530:intron 45.0%
CAAGCTCATTATACACCCAC+AGG + chr3_2:36472869-36472888 None:intergenic 45.0%
! TGTGATTCTTGTGGTGGAGA+CGG + chr3_2:36471132-36471151 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG + chr3_2:36471420-36471439 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG - chr3_2:36471833-36471852 Msa0404530:CDS 45.0%
TGTGGTGGCACAATGAACTT+GGG - chr3_2:36471834-36471853 Msa0404530:CDS 45.0%
ATGAACTTGGGGTTTCTTGG+TGG - chr3_2:36471846-36471865 Msa0404530:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG - chr3_2:36471857-36471876 Msa0404530:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG - chr3_2:36471868-36471887 Msa0404530:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG + chr3_2:36471876-36471895 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG + chr3_2:36472198-36472217 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG + chr3_2:36472199-36472218 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG + chr3_2:36472200-36472219 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG - chr3_2:36472221-36472240 Msa0404530:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG - chr3_2:36472222-36472241 Msa0404530:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG - chr3_2:36472223-36472242 Msa0404530:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG - chr3_2:36472290-36472309 Msa0404530:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG - chr3_2:36472291-36472310 Msa0404530:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG - chr3_2:36472301-36472320 Msa0404530:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG - chr3_2:36472315-36472334 Msa0404530:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG - chr3_2:36472316-36472335 Msa0404530:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG - chr3_2:36472340-36472359 Msa0404530:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG + chr3_2:36472487-36472506 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG - chr3_2:36472675-36472694 Msa0404530:intron 45.0%
GGACGATCATTGATCCAGTT+TGG - chr3_2:36472696-36472715 Msa0404530:intron 45.0%
CAAGCTCATTATACACCCAC+AGG + chr3_2:36472869-36472888 None:intergenic 45.0%
!! ACGGAAAGAGGGTCGATTTG+TGG + chr3_2:36471113-36471132 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG + chr3_2:36471124-36471143 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG - chr3_2:36471835-36471854 Msa0404530:CDS 50.0%
! GGTTTCTTGGTGGCATACCT+TGG - chr3_2:36471856-36471875 Msa0404530:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG + chr3_2:36471888-36471907 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG + chr3_2:36471928-36471947 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG - chr3_2:36472036-36472055 Msa0404530:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG - chr3_2:36472302-36472321 Msa0404530:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG - chr3_2:36472336-36472355 Msa0404530:CDS 50.0%
!! ACGGAAAGAGGGTCGATTTG+TGG + chr3_2:36471113-36471132 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG + chr3_2:36471124-36471143 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG - chr3_2:36471835-36471854 Msa0404530:CDS 50.0%
! GGTTTCTTGGTGGCATACCT+TGG - chr3_2:36471856-36471875 Msa0404530:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG + chr3_2:36471888-36471907 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG + chr3_2:36471928-36471947 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG - chr3_2:36472036-36472055 Msa0404530:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG - chr3_2:36472302-36472321 Msa0404530:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG - chr3_2:36472336-36472355 Msa0404530:CDS 50.0%
! CTTGTGGTGGAGACGGAAAG+AGG + chr3_2:36471125-36471144 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG - chr3_2:36471412-36471431 Msa0404530:three_prime_UTR 55.0%
AAGGGCCACCCTGACAACTT+GGG + chr3_2:36472044-36472063 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG - chr3_2:36472189-36472208 Msa0404530:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG + chr3_2:36472233-36472252 None:intergenic 55.0%
! CTTGTGGTGGAGACGGAAAG+AGG + chr3_2:36471125-36471144 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG - chr3_2:36471412-36471431 Msa0404530:three_prime_UTR 55.0%
AAGGGCCACCCTGACAACTT+GGG + chr3_2:36472044-36472063 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG - chr3_2:36472189-36472208 Msa0404530:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG + chr3_2:36472233-36472252 None:intergenic 55.0%
CAAGGGCCACCCTGACAACT+TGG + chr3_2:36472045-36472064 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG - chr3_2:36472973-36472992 Msa0404530:five_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG - chr3_2:36472974-36472993 Msa0404530:five_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG + chr3_2:36472983-36473002 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG + chr3_2:36472984-36473003 None:intergenic 60.0%
CAAGGGCCACCCTGACAACT+TGG + chr3_2:36472045-36472064 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG - chr3_2:36472973-36472992 Msa0404530:five_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG - chr3_2:36472974-36472993 Msa0404530:five_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG + chr3_2:36472983-36473002 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG + chr3_2:36472984-36473003 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 36471108 36473155 36471108 ID=Msa0404530;Name=Msa0404530
chr3_2 mRNA 36471108 36473155 36471108 ID=Msa0404530-mRNA-1;Parent=Msa0404530;Name=Msa0404530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=232|1|1|1|0.5|0.33|3|388|268
chr3_2 exon 36471108 36471623 36471108 ID=Msa0404530-mRNA-1:exon:7315;Parent=Msa0404530-mRNA-1
chr3_2 exon 36471739 36472449 36471739 ID=Msa0404530-mRNA-1:exon:7314;Parent=Msa0404530-mRNA-1
chr3_2 exon 36472956 36473155 36472956 ID=Msa0404530-mRNA-1:exon:7313;Parent=Msa0404530-mRNA-1
chr3_2 five_prime_UTR 36472956 36473155 36472956 ID=Msa0404530-mRNA-1:five_prime_utr;Parent=Msa0404530-mRNA-1
chr3_2 five_prime_UTR 36472418 36472449 36472418 ID=Msa0404530-mRNA-1:five_prime_utr;Parent=Msa0404530-mRNA-1
chr3_2 CDS 36471739 36472417 36471739 ID=Msa0404530-mRNA-1:cds;Parent=Msa0404530-mRNA-1
chr3_2 CDS 36471496 36471623 36471496 ID=Msa0404530-mRNA-1:cds;Parent=Msa0404530-mRNA-1
chr3_2 three_prime_UTR 36471108 36471495 36471108 ID=Msa0404530-mRNA-1:three_prime_utr;Parent=Msa0404530-mRNA-1
Gene Sequence

>Msa0404530

ATGAACTTGGGGTTTCTTGGTGGCATACCTTGGGTTAAACCTCGGAGTAACCAAGATTCAGCAATACATTTAGTTCAAACCACTGCGTTTACTTCGCAAGTCAAACATGAATCATCTGGTATTGATCCCAAATTTACTCCAGATTCAGCGACTCATTTAGTTCAAAAAGCACAACAAGAGTCATCTGTTAATGATCCCAAGTTGTCAGGGTGGCCCTTGTCCTTCCTTTCGTTATTTCCATGGACAAATAAAGATGGAGAAAAGTTTCAAAGACCAACTACGATCAATAAAGAGTTGAAGAGGCATGCACAAAATCGCGAAAACGTTGTTGGAAAAGATAATATGGCTACCCCTTTGCGCTTTAGGCCTTATGTTTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCACAGTTGTTTCCTAGATATGGACATTACTGTGGACCTAATTGGTCAAGTGGGAAAGATGGGGGATCTCTTGTTTGGGACAAGCGTCCAATTGATTGGTTGGATTACTGCTGCTATTGCCATGATATAGGATACGATACTCATGATCAAGCTAAACTGCTGAAAGCTGATTTAGCCTTTCTTGAGTGCCTAGAGAATCGCCATATTTTGCGTACTAAAGGAGACCCGCACGTTGCTCATCTTTACAAGACAATGTGCATTAATGGTCTTAAGAATTTTCTAATACCTTACAGAACGAATCTCGTAAGTCTACAACAGTCAGGACGATCATTGATCCAGTTTGGATGGCTAAGCAATTTGAAATGGAGGAGTTGGAATTACCAAAAAGAATGA

Protein sequence

>Msa0404530

MNLGFLGGIPWVKPRSNQDSAIHLVQTTAFTSQVKHESSGIDPKFTPDSATHLVQKAQQESSVNDPKLSGWPLSFLSLFPWTNKDGEKFQRPTTINKELKRHAQNRENVVGKDNMATPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDKRPIDWLDYCCYCHDIGYDTHDQAKLLKADLAFLECLENRHILRTKGDPHVAHLYKTMCINGLKNFLIPYRTNLVSLQQSGRSLIQFGWLSNLKWRSWNYQKE*