AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126810 MtrunA17_Chr7g0269301 98.148 162 3 0 1 162 1 162 1.07e-116 327
Msa1126810 MtrunA17_Chr1g0195661 66.667 168 49 3 1 162 1 167 2.77e-77 227
Msa1126810 MtrunA17_Chr1g0194801 42.500 160 79 6 6 158 5 158 4.89e-33 114
Msa1126810 MtrunA17_Chr1g0192651 40.741 162 89 4 1 159 1 158 5.34e-33 115
Msa1126810 MtrunA17_Chr1g0176311 36.905 168 93 4 7 162 21 187 1.22e-29 107
Msa1126810 MtrunA17_Chr1g0176321 38.506 174 88 5 7 162 2 174 2.83e-29 105
Msa1126810 MtrunA17_Chr5g0427291 39.181 171 88 5 1 156 1 170 2.40e-26 98.2
Msa1126810 MtrunA17_Chr4g0001641 49.206 63 32 0 94 156 3 65 3.05e-15 66.6
Msa1126810 MtrunA17_Chr2g0294421 28.144 167 92 4 12 162 9 163 1.20e-12 62.4
Msa1126810 MtrunA17_Chr5g0433951 31.288 163 96 6 4 156 1 157 1.20e-12 62.4
Msa1126810 MtrunA17_Chr4g0032261 30.719 153 96 4 12 157 9 158 5.73e-12 60.5
Msa1126810 MtrunA17_Chr7g0240701 32.911 158 96 5 6 156 3 157 6.94e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126810 AT2G47710.1 67.284 162 51 2 1 161 1 161 8.39e-72 213
Msa1126810 AT3G11930.1 39.506 162 85 4 10 159 35 195 3.17e-34 119
Msa1126810 AT3G11930.2 39.264 163 85 4 10 159 35 196 4.70e-34 119
Msa1126810 AT3G11930.4 39.024 164 85 4 10 159 35 197 7.27e-34 118
Msa1126810 AT1G09740.2 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1126810 AT1G09740.1 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1126810 AT3G58450.2 39.103 156 84 5 11 159 33 184 6.44e-29 105
Msa1126810 AT3G11930.3 33.862 189 85 5 10 159 35 222 5.96e-28 103
Msa1126810 AT5G49050.1 45.833 120 62 3 1 119 33 150 1.29e-27 100
Msa1126810 AT3G58450.1 38.037 163 83 6 11 159 33 191 1.03e-26 100
Msa1126810 AT3G62550.1 38.323 167 83 6 1 157 1 157 3.00e-26 97.8
Msa1126810 AT1G68300.1 35.948 153 90 5 7 156 10 157 1.91e-22 88.2

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTATTAATTGTTAA+TGG 0.188332 7_3:+78370866 None:intergenic
GAAGCACCATGCTTCTATTT+TGG 0.216579 7_3:-78369963 Msa1126810:CDS
TGAGATCAGTGTTTGGGTTT+TGG 0.228710 7_3:+78369476 None:intergenic
TCTACTAATGTTGGCTTCAT+AGG 0.275135 7_3:-78370637 Msa1126810:CDS
GAATTGAATTTATTCATATT+CGG 0.325701 7_3:+78370934 None:intergenic
TGAATGGACTCTGGATCATT+TGG 0.356319 7_3:-78370719 Msa1126810:CDS
ACAAGAACAAGTTTGAAGAT+TGG 0.363933 7_3:+78370679 None:intergenic
AAAATGTACTAAAATTGAAC+AGG 0.368682 7_3:-78369304 Msa1126810:three_prime_UTR
GTTGTAGGTAGTCATGGTTA+TGG 0.387360 7_3:-78369941 Msa1126810:CDS
TTAGCACATACGCTCTTGAA+TGG 0.393024 7_3:-78370735 Msa1126810:CDS
AGCCAGTGAGATCAGTGTTT+GGG 0.402587 7_3:+78369470 None:intergenic
CATGTTGAGTCTATAGAATA+AGG 0.405322 7_3:-78369352 Msa1126810:three_prime_UTR
TTCAAATCGGCCTCCACAAT+AGG 0.409491 7_3:+78370489 None:intergenic
TGGTTTCGACCGGCAAGGAC+AGG 0.411632 7_3:+78369274 None:intergenic
ACATAGAACAAACAACATAA+TGG 0.416195 7_3:+78369375 None:intergenic
ATTAGTAGAAGGAGAAGGTT+TGG 0.417086 7_3:+78370651 None:intergenic
AACAAGTTTGAAGATTGGAT+TGG 0.418326 7_3:+78370684 None:intergenic
CAGCCAGTGAGATCAGTGTT+TGG 0.432645 7_3:+78369469 None:intergenic
TATTAAAATTACCGATCTCT+TGG 0.443273 7_3:+78370422 None:intergenic
AGATTTATTCTGATTGTTGT+GGG 0.444580 7_3:+78369434 None:intergenic
ATGGTTATGGAGCTATAAAA+AGG 0.449333 7_3:-78369928 Msa1126810:intron
ACAAGTTTGAAGATTGGATT+GGG 0.449888 7_3:+78370685 None:intergenic
CCTTCTCCTTCTACTAATGT+TGG 0.462856 7_3:-78370646 Msa1126810:CDS
ATGAAGCCAACATTAGTAGA+AGG 0.466396 7_3:+78370640 None:intergenic
GGTTTCGACCGGCAAGGACA+GGG 0.491368 7_3:+78369275 None:intergenic
GATACAAGATCTATCTATCA+TGG 0.495254 7_3:-78370809 Msa1126810:exon
CGCTGAGATATTACCTATTG+TGG 0.517301 7_3:-78370502 Msa1126810:CDS
TATTCATATTCGGAGCATCA+AGG 0.545230 7_3:+78370944 None:intergenic
GTCCTTGCCGGTCGAAACCA+TGG 0.545250 7_3:-78369271 Msa1126810:three_prime_UTR
ATACGCTCTTGAATGGACTC+TGG 0.555617 7_3:-78370728 Msa1126810:CDS
ATAAATACCATGGTTTCGAC+CGG 0.555649 7_3:+78369264 None:intergenic
AAGATTTATTCTGATTGTTG+TGG 0.556092 7_3:+78369433 None:intergenic
AGACGTAGTAGTGGAAGTTG+TGG 0.557524 7_3:-78370023 Msa1126810:CDS
GTTTCGACCGGCAAGGACAG+GGG 0.559730 7_3:+78369276 None:intergenic
GTAGTAGTGGAAGTTGTGGA+TGG 0.560904 7_3:-78370019 Msa1126810:CDS
AGAAATCTGCACCAAGAGAT+CGG 0.569017 7_3:-78370433 Msa1126810:intron
CCAACATTAGTAGAAGGAGA+AGG 0.571033 7_3:+78370646 None:intergenic
AATGTTGGCTTCATAGGCCC+TGG 0.571494 7_3:-78370631 Msa1126810:intron
AACCCAAACACTGATCTCAC+TGG 0.576013 7_3:-78369472 Msa1126810:exon
AAATGTTCTTTGTGATGCTG+TGG 0.577056 7_3:-78369987 Msa1126810:CDS
TTTCGACCGGCAAGGACAGG+GGG 0.595146 7_3:+78369277 None:intergenic
GAGAAGCAAGTGATGGTGGT+CGG 0.595765 7_3:-78370775 Msa1126810:CDS
AAATGTACTAAAATTGAACA+GGG 0.597326 7_3:-78369303 Msa1126810:three_prime_UTR
TCAGGTAAAAGACGTAGTAG+TGG 0.600049 7_3:-78370032 Msa1126810:intron
ATTCATATTCGGAGCATCAA+GGG 0.601352 7_3:+78370945 None:intergenic
ACTAACTATGAGAGAACAAG+TGG 0.604787 7_3:+78370907 None:intergenic
TTCAGAGAAGCAAGTGATGG+TGG 0.623921 7_3:-78370779 Msa1126810:CDS
CTACAACCAAAATAGAAGCA+TGG 0.624553 7_3:+78369957 None:intergenic
TACCATGGTTTCGACCGGCA+AGG 0.626674 7_3:+78369269 None:intergenic
ACAAAATAAAATAAATACCA+TGG 0.633838 7_3:+78369254 None:intergenic
AGTTTCAGAGAAGCAAGTGA+TGG 0.653690 7_3:-78370782 Msa1126810:CDS
TGAGATATTACCTATTGTGG+AGG 0.658611 7_3:-78370499 Msa1126810:CDS
CACAATAGGTAATATCTCAG+CGG 0.686848 7_3:+78370503 None:intergenic
AATGTACTAAAATTGAACAG+GGG 0.730889 7_3:-78369302 Msa1126810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATTATTAATTGTTAA+TGG + chr7_3:78369294-78369313 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr7_3:78370909-78370928 Msa1126810:five_prime_UTR 10.0%
!! TACTTATTATTAATTGTTAA+TGG + chr7_3:78369294-78369313 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr7_3:78370909-78370928 Msa1126810:five_prime_UTR 10.0%
!! GAATTGAATTTATTCATATT+CGG + chr7_3:78369226-78369245 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr7_3:78369756-78369775 Msa1126810:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr7_3:78369957-78369976 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr7_3:78370840-78370859 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr7_3:78370906-78370925 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr7_3:78370910-78370929 Msa1126810:five_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr7_3:78369226-78369245 None:intergenic 15.0%
!!! TATTCTCTCATTTTTTATTT+TGG - chr7_3:78369756-78369775 Msa1126810:intron 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr7_3:78369957-78369976 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr7_3:78370840-78370859 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr7_3:78370906-78370925 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr7_3:78370910-78370929 Msa1126810:five_prime_UTR 15.0%
!! ATATATATACAAACATACCA+GGG + chr7_3:78369546-78369565 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr7_3:78369547-78369566 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr7_3:78370380-78370399 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr7_3:78370853-78370872 Msa1126810:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr7_3:78370854-78370873 Msa1126810:five_prime_UTR 20.0%
!! ATATATATACAAACATACCA+GGG + chr7_3:78369546-78369565 None:intergenic 20.0%
!! AATATATATACAAACATACC+AGG + chr7_3:78369547-78369566 None:intergenic 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr7_3:78370380-78370399 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr7_3:78370853-78370872 Msa1126810:five_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr7_3:78370854-78370873 Msa1126810:five_prime_UTR 20.0%
! TTGTAACAATGTTTATTCAG+CGG - chr7_3:78369628-78369647 Msa1126810:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr7_3:78369738-78369757 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr7_3:78370107-78370126 Msa1126810:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr7_3:78370311-78370330 Msa1126810:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr7_3:78370726-78370745 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr7_3:78370727-78370746 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr7_3:78370736-78370755 Msa1126810:CDS 25.0%
! ACATAGAACAAACAACATAA+TGG + chr7_3:78370785-78370804 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr7_3:78370855-78370874 Msa1126810:five_prime_UTR 25.0%
! TTGTAACAATGTTTATTCAG+CGG - chr7_3:78369628-78369647 Msa1126810:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr7_3:78369738-78369757 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr7_3:78370107-78370126 Msa1126810:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr7_3:78370311-78370330 Msa1126810:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr7_3:78370726-78370745 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr7_3:78370727-78370746 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr7_3:78370736-78370755 Msa1126810:CDS 25.0%
! ACATAGAACAAACAACATAA+TGG + chr7_3:78370785-78370804 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr7_3:78370855-78370874 Msa1126810:five_prime_UTR 25.0%
GATACAAGATCTATCTATCA+TGG - chr7_3:78369348-78369367 Msa1126810:three_prime_UTR 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr7_3:78369475-78369494 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr7_3:78369476-78369495 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr7_3:78369481-78369500 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr7_3:78369629-78369648 Msa1126810:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr7_3:78369684-78369703 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr7_3:78369863-78369882 Msa1126810:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr7_3:78369870-78369889 Msa1126810:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr7_3:78369993-78370012 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr7_3:78370072-78370091 Msa1126810:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr7_3:78370229-78370248 Msa1126810:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr7_3:78370272-78370291 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr7_3:78370524-78370543 Msa1126810:intron 30.0%
CCAATATAATCTCAAACGTA+GGG - chr7_3:78370525-78370544 Msa1126810:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr7_3:78370805-78370824 Msa1126810:exon 30.0%
GATACAAGATCTATCTATCA+TGG - chr7_3:78369348-78369367 Msa1126810:three_prime_UTR 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr7_3:78369475-78369494 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr7_3:78369476-78369495 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr7_3:78369481-78369500 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG - chr7_3:78369629-78369648 Msa1126810:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr7_3:78369684-78369703 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr7_3:78369863-78369882 Msa1126810:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr7_3:78369870-78369889 Msa1126810:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr7_3:78369993-78370012 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr7_3:78370072-78370091 Msa1126810:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr7_3:78370229-78370248 Msa1126810:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr7_3:78370272-78370291 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr7_3:78370524-78370543 Msa1126810:intron 30.0%
CCAATATAATCTCAAACGTA+GGG - chr7_3:78370525-78370544 Msa1126810:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr7_3:78370805-78370824 Msa1126810:exon 30.0%
! ATTCATATTCGGAGCATCAA+GGG + chr7_3:78369215-78369234 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr7_3:78369216-78369235 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr7_3:78369253-78369272 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr7_3:78369509-78369528 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr7_3:78369520-78369539 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr7_3:78369520-78369539 Msa1126810:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG + chr7_3:78369657-78369676 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr7_3:78369658-78369677 Msa1126810:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr7_3:78369839-78369858 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr7_3:78369840-78369859 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr7_3:78369985-78370004 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr7_3:78370170-78370189 Msa1126810:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr7_3:78370203-78370222 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr7_3:78370201-78370220 Msa1126810:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr7_3:78370210-78370229 Msa1126810:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr7_3:78370273-78370292 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr7_3:78370288-78370307 Msa1126810:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr7_3:78370528-78370547 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr7_3:78370589-78370608 Msa1126810:intron 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr7_3:78370590-78370609 Msa1126810:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr7_3:78370896-78370915 None:intergenic 35.0%
! ATTCATATTCGGAGCATCAA+GGG + chr7_3:78369215-78369234 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr7_3:78369216-78369235 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr7_3:78369253-78369272 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr7_3:78369509-78369528 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr7_3:78369520-78369539 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr7_3:78369520-78369539 Msa1126810:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG + chr7_3:78369657-78369676 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr7_3:78369658-78369677 Msa1126810:intron 35.0%
CCTCTATATTCCTATGGATT+GGG + chr7_3:78369839-78369858 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr7_3:78369840-78369859 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr7_3:78369985-78370004 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr7_3:78370170-78370189 Msa1126810:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr7_3:78370203-78370222 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr7_3:78370201-78370220 Msa1126810:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr7_3:78370210-78370229 Msa1126810:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr7_3:78370273-78370292 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr7_3:78370288-78370307 Msa1126810:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr7_3:78370528-78370547 None:intergenic 35.0%
TTGAAACTGCATTTGTTTGC+AGG - chr7_3:78370589-78370608 Msa1126810:intron 35.0%
TGAAACTGCATTTGTTTGCA+GGG - chr7_3:78370590-78370609 Msa1126810:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr7_3:78370896-78370915 None:intergenic 35.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr7_3:78369375-78369394 Msa1126810:three_prime_UTR 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr7_3:78369422-78369441 Msa1126810:three_prime_UTR 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr7_3:78369438-78369457 Msa1126810:three_prime_UTR 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr7_3:78369514-78369533 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr7_3:78369511-78369530 Msa1126810:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG - chr7_3:78369655-78369674 Msa1126810:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr7_3:78369724-78369743 Msa1126810:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr7_3:78369826-78369845 Msa1126810:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr7_3:78369836-78369855 Msa1126810:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr7_3:78369841-78369860 Msa1126810:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr7_3:78369845-78369864 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr7_3:78369846-78369865 Msa1126810:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr7_3:78369849-78369868 Msa1126810:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr7_3:78369940-78369959 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr7_3:78370125-78370144 Msa1126810:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr7_3:78370194-78370213 Msa1126810:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr7_3:78370216-78370235 Msa1126810:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr7_3:78370600-78370619 Msa1126810:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr7_3:78370684-78370703 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr7_3:78369375-78369394 Msa1126810:three_prime_UTR 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr7_3:78369422-78369441 Msa1126810:three_prime_UTR 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr7_3:78369438-78369457 Msa1126810:three_prime_UTR 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr7_3:78369514-78369533 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr7_3:78369511-78369530 Msa1126810:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG - chr7_3:78369655-78369674 Msa1126810:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr7_3:78369724-78369743 Msa1126810:intron 40.0%
AGACTAATCTCCCAATCCAT+AGG - chr7_3:78369826-78369845 Msa1126810:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr7_3:78369836-78369855 Msa1126810:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr7_3:78369841-78369860 Msa1126810:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr7_3:78369845-78369864 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr7_3:78369846-78369865 Msa1126810:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr7_3:78369849-78369868 Msa1126810:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr7_3:78369940-78369959 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr7_3:78370125-78370144 Msa1126810:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr7_3:78370194-78370213 Msa1126810:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr7_3:78370216-78370235 Msa1126810:intron 40.0%
!! TTTGTTTGCAGGGCTGTTTT+AGG - chr7_3:78370600-78370619 Msa1126810:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr7_3:78370684-78370703 None:intergenic 40.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr7_3:78369378-78369397 Msa1126810:three_prime_UTR 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr7_3:78369429-78369448 Msa1126810:three_prime_UTR 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr7_3:78369671-78369690 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr7_3:78369934-78369953 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr7_3:78370134-78370153 Msa1126810:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr7_3:78370138-78370157 Msa1126810:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr7_3:78370455-78370474 Msa1126810:CDS 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr7_3:78370480-78370499 Msa1126810:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr7_3:78370685-78370704 Msa1126810:CDS 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr7_3:78370690-78370709 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr7_3:78369378-78369397 Msa1126810:three_prime_UTR 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr7_3:78369429-78369448 Msa1126810:three_prime_UTR 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr7_3:78369671-78369690 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr7_3:78369934-78369953 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr7_3:78370134-78370153 Msa1126810:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr7_3:78370138-78370157 Msa1126810:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr7_3:78370455-78370474 Msa1126810:CDS 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr7_3:78370480-78370499 Msa1126810:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr7_3:78370685-78370704 Msa1126810:CDS 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr7_3:78370690-78370709 None:intergenic 45.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr7_3:78369382-78369401 Msa1126810:three_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr7_3:78369526-78369545 Msa1126810:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG - chr7_3:78370474-78370493 Msa1126810:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr7_3:78370691-78370710 None:intergenic 50.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr7_3:78369382-78369401 Msa1126810:three_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr7_3:78369526-78369545 Msa1126810:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG - chr7_3:78370474-78370493 Msa1126810:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr7_3:78370691-78370710 None:intergenic 50.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr7_3:78370486-78370505 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr7_3:78370493-78370512 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr7_3:78370891-78370910 None:intergenic 55.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr7_3:78370486-78370505 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr7_3:78370493-78370512 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr7_3:78370891-78370910 None:intergenic 55.0%
TTTCGACCGGCAAGGACAGG+GGG + chr7_3:78370883-78370902 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr7_3:78370884-78370903 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr7_3:78370885-78370904 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr7_3:78370886-78370905 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr7_3:78370886-78370905 Msa1126810:five_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr7_3:78370883-78370902 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr7_3:78370884-78370903 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr7_3:78370885-78370904 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr7_3:78370886-78370905 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr7_3:78370886-78370905 Msa1126810:five_prime_UTR 60.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr7_3:78370874-78370893 Msa1126810:five_prime_UTR 70.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr7_3:78370874-78370893 Msa1126810:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78369176 78371003 78369176 ID=Msa1126810;Name=Msa1126810
chr7_3 mRNA 78369176 78371003 78369176 ID=Msa1126810-mRNA-1;Parent=Msa1126810;Name=Msa1126810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191|1|1|1|1|1|4|305|162
chr7_3 exon 78369176 78369568 78369176 ID=Msa1126810-mRNA-1:exon:21863;Parent=Msa1126810-mRNA-1
chr7_3 exon 78369929 78370050 78369929 ID=Msa1126810-mRNA-1:exon:21862;Parent=Msa1126810-mRNA-1
chr7_3 exon 78370434 78370531 78370434 ID=Msa1126810-mRNA-1:exon:21861;Parent=Msa1126810-mRNA-1
chr7_3 exon 78370632 78371003 78370632 ID=Msa1126810-mRNA-1:exon:21860;Parent=Msa1126810-mRNA-1
chr7_3 five_prime_UTR 78370813 78371003 78370813 ID=Msa1126810-mRNA-1:five_prime_utr;Parent=Msa1126810-mRNA-1
chr7_3 CDS 78370632 78370812 78370632 ID=Msa1126810-mRNA-1:cds;Parent=Msa1126810-mRNA-1
chr7_3 CDS 78370434 78370531 78370434 ID=Msa1126810-mRNA-1:cds;Parent=Msa1126810-mRNA-1
chr7_3 CDS 78369929 78370050 78369929 ID=Msa1126810-mRNA-1:cds;Parent=Msa1126810-mRNA-1
chr7_3 CDS 78369481 78369568 78369481 ID=Msa1126810-mRNA-1:cds;Parent=Msa1126810-mRNA-1
chr7_3 three_prime_UTR 78369176 78369480 78369176 ID=Msa1126810-mRNA-1:three_prime_utr;Parent=Msa1126810-mRNA-1
Gene Sequence

>Msa1126810

ATGGCTCAAGTTTCAGAGAAGCAAGTGATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCGGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa1126810

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*