AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0948170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948170 MtrunA17_Chr6g0463001 97.059 238 7 0 1 238 1 238 2.90e-171 471
Msa0948170 MtrunA17_Chr6g0462991 77.731 238 34 3 1 238 1 219 3.66e-118 336
Msa0948170 MtrunA17_Chr1g0202361 64.135 237 65 9 1 236 41 258 1.77e-82 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948170 AT5G52900.1 40.891 247 115 12 2 236 7 234 2.16e-34 123

Find 70 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGTTGTTCAACTGATTT+TGG 0.056468 6_3:-31957406 Msa0948170:three_prime_UTR
TCAAGCTTTGCCATCAAATT+TGG 0.083163 6_3:-31957526 Msa0948170:three_prime_UTR
CTACTAGTGATGATGGTTTA+AGG 0.126697 6_3:+31958540 None:intergenic
TGCCGTCGCTGTCTAATTTA+TGG 0.150681 6_3:+31957732 None:intergenic
TTGAACAACTTCGCTGATTT+TGG 0.166089 6_3:+31957416 None:intergenic
GCTTCTTCTATCTTACTCTT+TGG 0.194146 6_3:+31958620 None:intergenic
AGCATGCCATATATCAATTT+TGG 0.195468 6_3:+31957313 None:intergenic
ATATGTATACTTATTTCTTA+TGG 0.213816 6_3:+31957566 None:intergenic
CTTCTAGAAGATGGCATTCT+TGG 0.216433 6_3:+31958443 None:intergenic
GCATATCAAGGTTATGAAAA+AGG 0.264436 6_3:-31957762 Msa0948170:three_prime_UTR
TTTATTTGTTACATGTGATA+TGG 0.284843 6_3:+31958217 None:intergenic
AGCTTCTTCCTTCATTGAAA+TGG 0.311354 6_3:-31958468 Msa0948170:CDS
GATTCACCAAAATTGATATA+TGG 0.315311 6_3:-31957319 Msa0948170:three_prime_UTR
CCTCAATTGTGTTCGTGTTA+TGG 0.317849 6_3:+31957688 None:intergenic
TTCAATGATTCAACAAATAA+TGG 0.323139 6_3:+31958311 None:intergenic
AAGAATATTAGAGGAAATTA+TGG 0.323873 6_3:-31958026 Msa0948170:CDS
CAAGCTTTGCCATCAAATTT+GGG 0.330789 6_3:-31957525 Msa0948170:three_prime_UTR
AGTGAGAGGGGATTGTTGTA+AGG 0.366132 6_3:+31958379 None:intergenic
GAATATGCAACACTAATTCT+TGG 0.384978 6_3:+31957993 None:intergenic
ATTCAACAAATAATGGCATT+AGG 0.397396 6_3:+31958318 None:intergenic
TTTGATGAATCATATTCATA+TGG 0.399205 6_3:+31958281 None:intergenic
CAATCAGTGAAGAATATTAG+AGG 0.410239 6_3:-31958035 Msa0948170:CDS
TCACTAGTAGAAAGCCTTGA+TGG 0.413442 6_3:-31958527 Msa0948170:CDS
TTGCATATTCCGCGGATGAT+TGG 0.414207 6_3:-31957980 Msa0948170:CDS
AGAGGGGATTGTTGTAAGGT+TGG 0.430996 6_3:+31958383 None:intergenic
CAAGAAGCCCTTCATTGAAA+AGG 0.435742 6_3:-31958175 Msa0948170:CDS
ATGAATCTTTGAAGATAACT+TGG 0.435778 6_3:+31958643 None:intergenic
GCCTTTGTGTAGAAGATTGA+GGG 0.450787 6_3:-31958102 Msa0948170:CDS
AGGCTTTCTACTAGTGATGA+TGG 0.454755 6_3:+31958533 None:intergenic
TGGAAAGTGTGAGGGAAAGA+AGG 0.460669 6_3:+31958663 None:intergenic
GAAATAAGTATACATATGAT+TGG 0.461396 6_3:-31957560 Msa0948170:three_prime_UTR
ATTTCTTATGGATACTCCAT+TGG 0.465723 6_3:+31957578 None:intergenic
TCTTGGATCCATTTCAATGA+AGG 0.466142 6_3:+31958460 None:intergenic
TGTTTACATTAAATGAGAAT+CGG 0.468522 6_3:-31957443 Msa0948170:three_prime_UTR
CATATTCCGCGGATGATTGG+CGG 0.479193 6_3:-31957977 Msa0948170:CDS
CTTCATTGCAAAAGATCCAT+TGG 0.491601 6_3:-31957912 Msa0948170:intron
AAGTGTCAGTGTCGTGTCAC+CGG 0.493765 6_3:+31957248 None:intergenic
GCACGGACACTCCTCGGATT+AGG 0.500151 6_3:-31957277 Msa0948170:three_prime_UTR
GGCCTTTGTGTAGAAGATTG+AGG 0.502821 6_3:-31958103 Msa0948170:CDS
GAGTAAGATAGAAGAAGCCA+TGG 0.511798 6_3:-31958615 Msa0948170:exon
TAATGGCATTAGGTAACCAT+TGG 0.512546 6_3:+31958328 None:intergenic
ATCACATGTAACAAATAAAG+TGG 0.516247 6_3:-31958213 Msa0948170:CDS
TTCATCAGAAGAATCAAGAT+AGG 0.516867 6_3:+31958490 None:intergenic
TCCTCGGATTAGGCGTGTCC+CGG 0.522359 6_3:-31957267 Msa0948170:three_prime_UTR
GGAAAGTGTGAGGGAAAGAA+GGG 0.527768 6_3:+31958664 None:intergenic
CATTGGTCTTGTCTGCACCA+TGG 0.530971 6_3:+31957595 None:intergenic
GCATGTTAGAGTGCATATCA+AGG 0.534911 6_3:-31957774 Msa0948170:three_prime_UTR
ATGTGATATGGAAGAAGCTA+AGG 0.537039 6_3:+31958229 None:intergenic
TATGAAGCACGGACACTCCT+CGG 0.547584 6_3:-31957283 Msa0948170:three_prime_UTR
GAGAGGATGAGATGTTTCCA+TGG 0.551109 6_3:+31958598 None:intergenic
AAGATAACTTGGAAAGTGTG+AGG 0.569745 6_3:+31958654 None:intergenic
TTCTAAAAGAAGAACCATCA+AGG 0.577711 6_3:+31958513 None:intergenic
CCATAACACGAACACAATTG+AGG 0.577961 6_3:-31957688 Msa0948170:three_prime_UTR
AAAGGTGTAGAACATTATCA+AGG 0.580857 6_3:-31958157 Msa0948170:CDS
AGTGTCAGTGTCGTGTCACC+GGG 0.591978 6_3:+31957249 None:intergenic
TGCTTTCAATCTATGAAGCA+CGG 0.597624 6_3:-31957294 Msa0948170:three_prime_UTR
AGATAACTTGGAAAGTGTGA+GGG 0.605881 6_3:+31958655 None:intergenic
CATCAACAAGAGTAGTGAGA+GGG 0.614657 6_3:+31958366 None:intergenic
GGGCTTCTTGAATCTTCTCG+AGG 0.622817 6_3:+31958188 None:intergenic
AATTAGTGTTGCATATTCCG+CGG 0.626302 6_3:-31957988 Msa0948170:CDS
ACCGGGACACGCCTAATCCG+AGG 0.629910 6_3:+31957266 None:intergenic
CATGGTGCAGACAAGACCAA+TGG 0.637604 6_3:-31957594 Msa0948170:three_prime_UTR
AAATGAGTTGAAGATAGCAA+AGG 0.638354 6_3:+31958692 None:intergenic
AAGTATACATATGATTGGTG+AGG 0.653104 6_3:-31957555 Msa0948170:three_prime_UTR
GCGACTGCAATTCAAAACCA+TGG 0.655668 6_3:-31957612 Msa0948170:three_prime_UTR
GCATCAACAAGAGTAGTGAG+AGG 0.665674 6_3:+31958365 None:intergenic
CCCCTCAATCTTCTACACAA+AGG 0.666242 6_3:+31958101 None:intergenic
GACCATAAATTAGACAGCGA+CGG 0.675229 6_3:-31957734 Msa0948170:three_prime_UTR
CCTTTGTGTAGAAGATTGAG+GGG 0.676588 6_3:-31958101 Msa0948170:CDS
ATCAACAAGAGTAGTGAGAG+GGG 0.692218 6_3:+31958367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATTTGAAATTTTTA+AGG - chr6_3:31957831-31957850 Msa0948170:intron 10.0%
!!! AAAAGTATTTGAAATTTTTA+AGG - chr6_3:31957831-31957850 Msa0948170:intron 10.0%
!!! TTTTTTTTTTTACATACCAA+TGG + chr6_3:31958062-31958081 None:intergenic 15.0%
!!! ATATGTATACTTATTTCTTA+TGG + chr6_3:31958392-31958411 None:intergenic 15.0%
!!! TTTTTTTTTTTACATACCAA+TGG + chr6_3:31958062-31958081 None:intergenic 15.0%
!!! ATATGTATACTTATTTCTTA+TGG + chr6_3:31958392-31958411 None:intergenic 15.0%
!!! TAGAAAGTTTTTCATATAGT+TGG - chr6_3:31957384-31957403 Msa0948170:three_prime_UTR 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG + chr6_3:31957524-31957543 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG + chr6_3:31957647-31957666 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG + chr6_3:31957677-31957696 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG + chr6_3:31957741-31957760 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG - chr6_3:31957929-31957948 Msa0948170:CDS 20.0%
!!! CAATTATTTTGATACTAACA+TGG - chr6_3:31958123-31958142 Msa0948170:CDS 20.0%
!! GAAATAAGTATACATATGAT+TGG - chr6_3:31958395-31958414 Msa0948170:CDS 20.0%
!! TGTTTACATTAAATGAGAAT+CGG - chr6_3:31958512-31958531 Msa0948170:CDS 20.0%
!!! ATATATCAATTTTGGTGAAT+CGG + chr6_3:31958637-31958656 None:intergenic 20.0%
!!! TAGAAAGTTTTTCATATAGT+TGG - chr6_3:31957384-31957403 Msa0948170:three_prime_UTR 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG + chr6_3:31957524-31957543 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG + chr6_3:31957647-31957666 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG + chr6_3:31957677-31957696 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG + chr6_3:31957741-31957760 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG - chr6_3:31957929-31957948 Msa0948170:CDS 20.0%
!!! CAATTATTTTGATACTAACA+TGG - chr6_3:31958123-31958142 Msa0948170:CDS 20.0%
!! GAAATAAGTATACATATGAT+TGG - chr6_3:31958395-31958414 Msa0948170:CDS 20.0%
!! TGTTTACATTAAATGAGAAT+CGG - chr6_3:31958512-31958531 Msa0948170:CDS 20.0%
!!! ATATATCAATTTTGGTGAAT+CGG + chr6_3:31958637-31958656 None:intergenic 20.0%
!! ATGAATCTTTGAAGATAACT+TGG + chr6_3:31957315-31957334 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG + chr6_3:31957640-31957659 None:intergenic 25.0%
! ATCACATGTAACAAATAAAG+TGG - chr6_3:31957742-31957761 Msa0948170:three_prime_UTR 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG + chr6_3:31958442-31958461 None:intergenic 25.0%
! GATTCACCAAAATTGATATA+TGG - chr6_3:31958636-31958655 Msa0948170:five_prime_UTR 25.0%
!! ATGAATCTTTGAAGATAACT+TGG + chr6_3:31957315-31957334 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG + chr6_3:31957640-31957659 None:intergenic 25.0%
! ATCACATGTAACAAATAAAG+TGG - chr6_3:31957742-31957761 Msa0948170:three_prime_UTR 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG + chr6_3:31958442-31958461 None:intergenic 25.0%
! GATTCACCAAAATTGATATA+TGG - chr6_3:31958636-31958655 Msa0948170:five_prime_UTR 25.0%
! AAATGAGTTGAAGATAGCAA+AGG + chr6_3:31957266-31957285 None:intergenic 30.0%
GAAAAACTTTCTATTGAGAG+AGG + chr6_3:31957377-31957396 None:intergenic 30.0%
! TTCTAAAAGAAGAACCATCA+AGG + chr6_3:31957445-31957464 None:intergenic 30.0%
TTCATCAGAAGAATCAAGAT+AGG + chr6_3:31957468-31957487 None:intergenic 30.0%
! TTCTACACCTTTTCAATGAA+GGG + chr6_3:31957790-31957809 None:intergenic 30.0%
! AAAGGTGTAGAACATTATCA+AGG - chr6_3:31957798-31957817 Msa0948170:intron 30.0%
CAATCAGTGAAGAATATTAG+AGG - chr6_3:31957920-31957939 Msa0948170:CDS 30.0%
GAATATGCAACACTAATTCT+TGG + chr6_3:31957965-31957984 None:intergenic 30.0%
CTACTATCTATTAAGACACA+TGG + chr6_3:31958094-31958113 None:intergenic 30.0%
GCATATCAAGGTTATGAAAA+AGG - chr6_3:31958193-31958212 Msa0948170:CDS 30.0%
TAGACATGCACGAAAAATTT+CGG + chr6_3:31958312-31958331 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG + chr6_3:31958380-31958399 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG - chr6_3:31958400-31958419 Msa0948170:CDS 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG - chr6_3:31958550-31958569 Msa0948170:CDS 30.0%
! TTTTGGTGAATCGGAAATAA+CGG + chr6_3:31958628-31958647 None:intergenic 30.0%
! AGCATGCCATATATCAATTT+TGG + chr6_3:31958645-31958664 None:intergenic 30.0%
! AAATGAGTTGAAGATAGCAA+AGG + chr6_3:31957266-31957285 None:intergenic 30.0%
GAAAAACTTTCTATTGAGAG+AGG + chr6_3:31957377-31957396 None:intergenic 30.0%
! TTCTAAAAGAAGAACCATCA+AGG + chr6_3:31957445-31957464 None:intergenic 30.0%
TTCATCAGAAGAATCAAGAT+AGG + chr6_3:31957468-31957487 None:intergenic 30.0%
! TTCTACACCTTTTCAATGAA+GGG + chr6_3:31957790-31957809 None:intergenic 30.0%
! AAAGGTGTAGAACATTATCA+AGG - chr6_3:31957798-31957817 Msa0948170:intron 30.0%
CAATCAGTGAAGAATATTAG+AGG - chr6_3:31957920-31957939 Msa0948170:CDS 30.0%
GAATATGCAACACTAATTCT+TGG + chr6_3:31957965-31957984 None:intergenic 30.0%
CTACTATCTATTAAGACACA+TGG + chr6_3:31958094-31958113 None:intergenic 30.0%
GCATATCAAGGTTATGAAAA+AGG - chr6_3:31958193-31958212 Msa0948170:CDS 30.0%
TAGACATGCACGAAAAATTT+CGG + chr6_3:31958312-31958331 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG + chr6_3:31958380-31958399 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG - chr6_3:31958400-31958419 Msa0948170:CDS 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG - chr6_3:31958550-31958569 Msa0948170:CDS 30.0%
! TTTTGGTGAATCGGAAATAA+CGG + chr6_3:31958628-31958647 None:intergenic 30.0%
! AGCATGCCATATATCAATTT+TGG + chr6_3:31958645-31958664 None:intergenic 30.0%
! AGATAACTTGGAAAGTGTGA+GGG + chr6_3:31957303-31957322 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG + chr6_3:31957304-31957323 None:intergenic 35.0%
GCTTCTTCTATCTTACTCTT+TGG + chr6_3:31957338-31957357 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG + chr6_3:31957418-31957437 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG - chr6_3:31957487-31957506 Msa0948170:three_prime_UTR 35.0%
TCTTGGATCCATTTCAATGA+AGG + chr6_3:31957498-31957517 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG + chr6_3:31957630-31957649 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+AGG + chr6_3:31957729-31957748 None:intergenic 35.0%
! GTTCTACACCTTTTCAATGA+AGG + chr6_3:31957791-31957810 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG - chr6_3:31957967-31957986 Msa0948170:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG - chr6_3:31958043-31958062 Msa0948170:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG - chr6_3:31958429-31958448 Msa0948170:CDS 35.0%
CAAGCTTTGCCATCAAATTT+GGG - chr6_3:31958430-31958449 Msa0948170:CDS 35.0%
!!! TTGAACAACTTCGCTGATTT+TGG + chr6_3:31958542-31958561 None:intergenic 35.0%
!! CGAAGTTGTTCAACTGATTT+TGG - chr6_3:31958549-31958568 Msa0948170:CDS 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG - chr6_3:31958555-31958574 Msa0948170:CDS 35.0%
TGCTTTCAATCTATGAAGCA+CGG - chr6_3:31958661-31958680 Msa0948170:five_prime_UTR 35.0%
! AGATAACTTGGAAAGTGTGA+GGG + chr6_3:31957303-31957322 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG + chr6_3:31957304-31957323 None:intergenic 35.0%
GCTTCTTCTATCTTACTCTT+TGG + chr6_3:31957338-31957357 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG + chr6_3:31957418-31957437 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG - chr6_3:31957487-31957506 Msa0948170:three_prime_UTR 35.0%
TCTTGGATCCATTTCAATGA+AGG + chr6_3:31957498-31957517 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG + chr6_3:31957630-31957649 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+AGG + chr6_3:31957729-31957748 None:intergenic 35.0%
! GTTCTACACCTTTTCAATGA+AGG + chr6_3:31957791-31957810 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG - chr6_3:31957967-31957986 Msa0948170:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG - chr6_3:31958043-31958062 Msa0948170:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG - chr6_3:31958429-31958448 Msa0948170:CDS 35.0%
CAAGCTTTGCCATCAAATTT+GGG - chr6_3:31958430-31958449 Msa0948170:CDS 35.0%
!!! TTGAACAACTTCGCTGATTT+TGG + chr6_3:31958542-31958561 None:intergenic 35.0%
!! CGAAGTTGTTCAACTGATTT+TGG - chr6_3:31958549-31958568 Msa0948170:CDS 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG - chr6_3:31958555-31958574 Msa0948170:CDS 35.0%
TGCTTTCAATCTATGAAGCA+CGG - chr6_3:31958661-31958680 Msa0948170:five_prime_UTR 35.0%
GAGTAAGATAGAAGAAGCCA+TGG - chr6_3:31957340-31957359 Msa0948170:three_prime_UTR 40.0%
AGGCTTTCTACTAGTGATGA+TGG + chr6_3:31957425-31957444 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG - chr6_3:31957428-31957447 Msa0948170:three_prime_UTR 40.0%
! CTTCTAGAAGATGGCATTCT+TGG + chr6_3:31957515-31957534 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG + chr6_3:31957591-31957610 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG + chr6_3:31957592-31957611 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG - chr6_3:31957611-31957630 Msa0948170:three_prime_UTR 40.0%
CAAGAAGCCCTTCATTGAAA+AGG - chr6_3:31957780-31957799 Msa0948170:exon 40.0%
GCCTTTGTGTAGAAGATTGA+GGG - chr6_3:31957853-31957872 Msa0948170:intron 40.0%
CCTTTGTGTAGAAGATTGAG+GGG - chr6_3:31957854-31957873 Msa0948170:intron 40.0%
AGATTGAGGGGTCAAAAATC+AGG - chr6_3:31957866-31957885 Msa0948170:intron 40.0%
GCATGTTAGAGTGCATATCA+AGG - chr6_3:31958181-31958200 Msa0948170:CDS 40.0%
GACCATAAATTAGACAGCGA+CGG - chr6_3:31958221-31958240 Msa0948170:CDS 40.0%
CCTCAATTGTGTTCGTGTTA+TGG + chr6_3:31958270-31958289 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG - chr6_3:31958267-31958286 Msa0948170:CDS 40.0%
!!! ACAACTTCGCTGATTTTGGA+AGG + chr6_3:31958538-31958557 None:intergenic 40.0%
GAGTAAGATAGAAGAAGCCA+TGG - chr6_3:31957340-31957359 Msa0948170:three_prime_UTR 40.0%
AGGCTTTCTACTAGTGATGA+TGG + chr6_3:31957425-31957444 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG - chr6_3:31957428-31957447 Msa0948170:three_prime_UTR 40.0%
! CTTCTAGAAGATGGCATTCT+TGG + chr6_3:31957515-31957534 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG + chr6_3:31957591-31957610 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG + chr6_3:31957592-31957611 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG - chr6_3:31957611-31957630 Msa0948170:three_prime_UTR 40.0%
CAAGAAGCCCTTCATTGAAA+AGG - chr6_3:31957780-31957799 Msa0948170:exon 40.0%
GCCTTTGTGTAGAAGATTGA+GGG - chr6_3:31957853-31957872 Msa0948170:intron 40.0%
CCTTTGTGTAGAAGATTGAG+GGG - chr6_3:31957854-31957873 Msa0948170:intron 40.0%
AGATTGAGGGGTCAAAAATC+AGG - chr6_3:31957866-31957885 Msa0948170:intron 40.0%
GCATGTTAGAGTGCATATCA+AGG - chr6_3:31958181-31958200 Msa0948170:CDS 40.0%
GACCATAAATTAGACAGCGA+CGG - chr6_3:31958221-31958240 Msa0948170:CDS 40.0%
CCTCAATTGTGTTCGTGTTA+TGG + chr6_3:31958270-31958289 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG - chr6_3:31958267-31958286 Msa0948170:CDS 40.0%
!!! ACAACTTCGCTGATTTTGGA+AGG + chr6_3:31958538-31958557 None:intergenic 40.0%
! GGAAAGTGTGAGGGAAAGAA+GGG + chr6_3:31957294-31957313 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG + chr6_3:31957295-31957314 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG + chr6_3:31957360-31957379 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG + chr6_3:31957575-31957594 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG + chr6_3:31957579-31957598 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG + chr6_3:31957593-31957612 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG - chr6_3:31957852-31957871 Msa0948170:intron 45.0%
CCCCTCAATCTTCTACACAA+AGG + chr6_3:31957857-31957876 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG - chr6_3:31957975-31957994 Msa0948170:CDS 45.0%
TGCCGTCGCTGTCTAATTTA+TGG + chr6_3:31958226-31958245 None:intergenic 45.0%
GCGACTGCAATTCAAAACCA+TGG - chr6_3:31958343-31958362 Msa0948170:CDS 45.0%
! GGAAAGTGTGAGGGAAAGAA+GGG + chr6_3:31957294-31957313 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG + chr6_3:31957295-31957314 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG + chr6_3:31957360-31957379 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG + chr6_3:31957575-31957594 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG + chr6_3:31957579-31957598 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG + chr6_3:31957593-31957612 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG - chr6_3:31957852-31957871 Msa0948170:intron 45.0%
CCCCTCAATCTTCTACACAA+AGG + chr6_3:31957857-31957876 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG - chr6_3:31957975-31957994 Msa0948170:CDS 45.0%
TGCCGTCGCTGTCTAATTTA+TGG + chr6_3:31958226-31958245 None:intergenic 45.0%
GCGACTGCAATTCAAAACCA+TGG - chr6_3:31958343-31958362 Msa0948170:CDS 45.0%
GGGCTTCTTGAATCTTCTCG+AGG + chr6_3:31957770-31957789 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+CGG - chr6_3:31957978-31957997 Msa0948170:CDS 50.0%
!! CATTGGTCTTGTCTGCACCA+TGG + chr6_3:31958363-31958382 None:intergenic 50.0%
CATGGTGCAGACAAGACCAA+TGG - chr6_3:31958361-31958380 Msa0948170:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr6_3:31958672-31958691 Msa0948170:five_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG + chr6_3:31958710-31958729 None:intergenic 50.0%
GGGCTTCTTGAATCTTCTCG+AGG + chr6_3:31957770-31957789 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+CGG - chr6_3:31957978-31957997 Msa0948170:CDS 50.0%
!! CATTGGTCTTGTCTGCACCA+TGG + chr6_3:31958363-31958382 None:intergenic 50.0%
CATGGTGCAGACAAGACCAA+TGG - chr6_3:31958361-31958380 Msa0948170:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr6_3:31958672-31958691 Msa0948170:five_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG + chr6_3:31958710-31958729 None:intergenic 50.0%
AGTGTCAGTGTCGTGTCACC+GGG + chr6_3:31958709-31958728 None:intergenic 55.0%
GGTGACACGACACTGACACT+TGG - chr6_3:31958709-31958728 Msa0948170:five_prime_UTR 55.0%
AGTGTCAGTGTCGTGTCACC+GGG + chr6_3:31958709-31958728 None:intergenic 55.0%
GCACGGACACTCCTCGGATT+AGG - chr6_3:31958678-31958697 Msa0948170:five_prime_UTR 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - chr6_3:31958688-31958707 Msa0948170:five_prime_UTR 60.0%
GCACGGACACTCCTCGGATT+AGG - chr6_3:31958678-31958697 Msa0948170:five_prime_UTR 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - chr6_3:31958688-31958707 Msa0948170:five_prime_UTR 60.0%
ACCGGGACACGCCTAATCCG+AGG + chr6_3:31958692-31958711 None:intergenic 65.0%
ACCGGGACACGCCTAATCCG+AGG + chr6_3:31958692-31958711 None:intergenic 65.0%
CACGCGCCGCCAATCATCCG+CGG + chr6_3:31957987-31958006 None:intergenic 70.0%
CACGCGCCGCCAATCATCCG+CGG + chr6_3:31957987-31958006 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 31957247 31958730 31957247 ID=Msa0948170;Name=Msa0948170
chr6_3 mRNA 31957247 31958730 31957247 ID=Msa0948170-mRNA-1;Parent=Msa0948170;Name=Msa0948170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=112|1|1|1|0|0.5|2|550|238
chr6_3 exon 31957247 31957807 31957247 ID=Msa0948170-mRNA-1:exon:8336;Parent=Msa0948170-mRNA-1
chr6_3 exon 31957913 31958730 31957913 ID=Msa0948170-mRNA-1:exon:8335;Parent=Msa0948170-mRNA-1
chr6_3 five_prime_UTR 31958619 31958730 31958619 ID=Msa0948170-mRNA-1:five_prime_utr;Parent=Msa0948170-mRNA-1
chr6_3 CDS 31957913 31958618 31957913 ID=Msa0948170-mRNA-1:cds;Parent=Msa0948170-mRNA-1
chr6_3 CDS 31957797 31957807 31957797 ID=Msa0948170-mRNA-1:cds;Parent=Msa0948170-mRNA-1
chr6_3 three_prime_UTR 31957247 31957796 31957247 ID=Msa0948170-mRNA-1:three_prime_utr;Parent=Msa0948170-mRNA-1
Gene Sequence

>Msa0948170

ATGGAAACATCTCATCCTCTCTCAATAGAAAGTTTTTCATATAGTTGGTTAGTAAACCTTAAACCATCATCACTAGTAGAAAGCCTTGATGGTTCTTCTTTTAGAACCTATCTTGATTCTTCTGATGAAGCTTCTTCCTTCATTGAAATGGATCCAAGAATGCCATCTTCTAGAAGATTTTTTATAAACTCACAAGATTTAAAATTTGACTTTCCAACCTTACAACAATCCCCTCTCACTACTCTTGTTGATGCAGATCAACTCTTTTCCAATGGTTACCTAATGCCATTATTTGTTGAATCATTGAATATAGAACCATATGAATATGATTCATCAAATTCTAATTCAAATTCAGATTCAAATTCAACCTTAGCTTCTTCCATATCACATGTAACAAATAAAGTGGTTCCTCGAGAAGATTCAAGAAGCCCTTCATTGAAAAGGTGTAGAACATTATCAAGGAGCATGTTTCAAAAGTATTTGAAATTTTTAAGGCCTTTGTGTAGAAGATTGAGGGGTCAAAAATCAGGATCAAAACATGAAAATGTTGTGAAAAGAACTCAATCAGTGAAGAATATTAGAGGAAATTATGGTGATTCTTCTCCAAGAATTAGTGTTGCATATTCCGCGGATGATTGGCGGCGCGTGTCATGTGATTCTGATTGTTCAATTTATGAAGCTGTACTTCATTGCAAAAGATCCATTGAAATGAGTTAA

Protein sequence

>Msa0948170

METSHPLSIESFSYSWLVNLKPSSLVESLDGSSFRTYLDSSDEASSFIEMDPRMPSSRRFFINSQDLKFDFPTLQQSPLTTLVDADQLFSNGYLMPLFVESLNIEPYEYDSSNSNSNSDSNSTLASSISHVTNKVVPREDSRSPSLKRCRTLSRSMFQKYLKFLRPLCRRLRGQKSGSKHENVVKRTQSVKNIRGNYGDSSPRISVAYSADDWRRVSCDSDCSIYEAVLHCKRSIEMS*