AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203510 MtrunA17_Chr8g0374711 98.031 254 3 1 1 254 1 252 0.0 511
Msa1203510 MtrunA17_Chr2g0287951 25.967 181 123 3 14 191 40 212 8.74e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203510 AT3G50560.1 67.164 268 73 2 1 253 2 269 5.84e-126 358

Find 94 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTTGTAACCACTATTT+TGG 0.164809 8_1:+57808933 Msa1203510:five_prime_UTR
TCTTATCATCTGCTACTATT+TGG 0.178737 8_1:+57811019 Msa1203510:three_prime_UTR
GGTTGCTCTGCTTCTTTAAA+TGG 0.216932 8_1:+57809763 Msa1203510:CDS
TTAGAGCTTGTGTTGTTTCT+TGG 0.236020 8_1:+57811163 Msa1203510:three_prime_UTR
CAAGGGAAGTTTGGAAAGTT+TGG 0.239457 8_1:-57809524 None:intergenic
CTTATCATCTGCTACTATTT+GGG 0.245781 8_1:+57811020 Msa1203510:three_prime_UTR
TAAGCATTGAGATGCTTAAA+TGG 0.283471 8_1:-57811143 None:intergenic
GCTTCTTTAAATGGCATTGC+AGG 0.309696 8_1:+57809772 Msa1203510:CDS
ATTGTTAATCATTATGTAAA+GGG 0.319631 8_1:+57811108 Msa1203510:three_prime_UTR
ACAAATAGCAAAACTATATA+TGG 0.323032 8_1:-57808919 None:intergenic
ATGAACGAACATCCATTTCT+TGG 0.333809 8_1:-57810839 None:intergenic
AAACATCATGAATTAATTCA+TGG 0.349882 8_1:-57810997 None:intergenic
TAGAGCTTGTGTTGTTTCTT+GGG 0.350537 8_1:+57811164 Msa1203510:three_prime_UTR
CGCCTTCAACTGTGCTCAAC+AGG 0.354644 8_1:+57809563 Msa1203510:CDS
AGAGAGAGACATGAAAATAA+TGG 0.355572 8_1:-57810933 None:intergenic
ATTAGGACCGACGCCAACTA+TGG 0.357925 8_1:-57809005 None:intergenic
ATGAAACGGCAAGGGAAGTT+TGG 0.367798 8_1:-57809533 None:intergenic
TTTCCTCTTTCAACCATTCC+CGG 0.371758 8_1:-57809721 None:intergenic
TTTCTTGGGTCCATGCATTC+CGG 0.380172 8_1:-57810824 None:intergenic
TCCCTTGCCGTTTCATCCCT+CGG 0.388630 8_1:+57809540 Msa1203510:CDS
ATGCATTGGCTCAAACATAT+TGG 0.404371 8_1:+57810784 Msa1203510:CDS
ATCTGCTACTATTTGGGACT+TGG 0.419999 8_1:+57811026 Msa1203510:three_prime_UTR
ATGTTGAAAAGGAGTTGGTT+TGG 0.421399 8_1:-57809493 None:intergenic
TATGTTTGAGCCAATGCATC+CGG 0.433151 8_1:-57810780 None:intergenic
AAGAATTAAGATTTAGCCTA+AGG 0.435850 8_1:-57808883 None:intergenic
TGGATTGAGAGATGTTGAAA+AGG 0.438146 8_1:-57809504 None:intergenic
TATTGTTAATCATTATGTAA+AGG 0.439250 8_1:+57811107 Msa1203510:three_prime_UTR
TACAAATAAAGAATGTATAT+AGG 0.447052 8_1:-57808859 None:intergenic
CATTCTTTATTTGTAACCTT+AGG 0.448531 8_1:+57808867 Msa1203510:five_prime_UTR
AGTGTAAAAGAAGCATTTGA+AGG 0.449118 8_1:+57809405 Msa1203510:CDS
GCCATCCTCGCCCGTGACTT+AGG 0.454853 8_1:+57809076 Msa1203510:CDS
CTACTTGCTACCTATAGTAT+AGG 0.457899 8_1:+57808817 Msa1203510:five_prime_UTR
TGAACGAACATCCATTTCTT+GGG 0.457910 8_1:-57810838 None:intergenic
GGTAATATTGCAGCCATAGT+TGG 0.459882 8_1:+57808992 Msa1203510:CDS
GAATGCATGGACCCAAGAAA+TGG 0.461502 8_1:+57810827 Msa1203510:CDS
TAATGGAGCGACATAAATTA+CGG 0.467636 8_1:-57810916 None:intergenic
AAAGGAACAATTCTATTCAC+TGG 0.475162 8_1:+57809742 Msa1203510:CDS
TGAATACTAGCCTATACTAT+AGG 0.478254 8_1:-57808827 None:intergenic
TGAAATAGCAAGGGAAGAAA+AGG 0.479373 8_1:+57809341 Msa1203510:CDS
TACCTGTTGAGCACAGTTGA+AGG 0.480690 8_1:-57809565 None:intergenic
GCTCGCAAGTTTGCTCATGA+AGG 0.481049 8_1:+57809043 Msa1203510:CDS
GCGATGGAGAGGCCGAGATT+AGG 0.485603 8_1:-57809022 None:intergenic
GAGAGATGTTGAAAAGGAGT+TGG 0.485715 8_1:-57809498 None:intergenic
AAGTGGTGGTGAGAGTGTTA+TGG 0.486623 8_1:+57810755 Msa1203510:CDS
ATTTATGAATTAGGTGCTGC+CGG 0.492617 8_1:+57809702 Msa1203510:intron
TCGTCGCGAGGAGGAGGAAG+TGG 0.500915 8_1:+57810738 Msa1203510:CDS
ATATTGGCATATACACGTTC+AGG 0.501804 8_1:+57810800 Msa1203510:CDS
ACCTAAGTCACGGGCGAGGA+TGG 0.502538 8_1:-57809077 None:intergenic
GTGCACCTCCACCAAAATAG+TGG 0.508075 8_1:-57808944 None:intergenic
TTTGAAGGTGTACTTTCACT+TGG 0.508660 8_1:+57809420 Msa1203510:CDS
TGTTATGGACCCGGATGCAT+TGG 0.516123 8_1:+57810770 Msa1203510:CDS
GGCATATACACGTTCAGGAC+CGG 0.520194 8_1:+57810805 Msa1203510:CDS
GTAGCTCATATTATTATCGA+TGG 0.524070 8_1:+57809990 Msa1203510:CDS
ACGATGTCGTCGCGAGGAGG+AGG 0.527856 8_1:+57810732 Msa1203510:CDS
CAAACGAAACGCACCTTGGT+GGG 0.529770 8_1:-57810022 None:intergenic
ACAAACGAAACGCACCTTGG+TGG 0.530352 8_1:-57810023 None:intergenic
ATGAGCAAACTTGCGAGCGA+TGG 0.536721 8_1:-57809038 None:intergenic
TACATTCATACCTAAGTCAC+GGG 0.542393 8_1:-57809086 None:intergenic
GAAGGCGCCGAGGGATGAAA+CGG 0.542643 8_1:-57809547 None:intergenic
CAAAACTATATATGGAAGGA+AGG 0.544164 8_1:-57808911 None:intergenic
GAATTAGGTGCTGCCGGGAA+TGG 0.547598 8_1:+57809708 Msa1203510:intron
GACATAAATTACGGACTGGT+AGG 0.548055 8_1:-57810907 None:intergenic
GGAATGGTTGAAAGAGGAAA+AGG 0.550184 8_1:+57809724 Msa1203510:CDS
CGCCGAGGGATGAAACGGCA+AGG 0.552431 8_1:-57809542 None:intergenic
GCTAGAGAATTTCAGCCTCA+AGG 0.567416 8_1:+57809960 Msa1203510:CDS
ACGTTCAGGACCGGAATGCA+TGG 0.567516 8_1:+57810814 Msa1203510:CDS
TTTATGAATTAGGTGCTGCC+GGG 0.568009 8_1:+57809703 Msa1203510:intron
ACATAAATTACGGACTGGTA+GGG 0.571986 8_1:-57810906 None:intergenic
GGAGTTGGTTTGGATTGAAG+AGG 0.572556 8_1:-57809483 None:intergenic
TATGGGGTGCAGAGGATCAT+CGG 0.575217 8_1:+57810698 Msa1203510:intron
GTTGGCGTCGGTCCTAATCT+CGG 0.576317 8_1:+57809010 Msa1203510:CDS
GCCGAGGGATGAAACGGCAA+GGG 0.581874 8_1:-57809541 None:intergenic
AGCACAGTTGAAGGCGCCGA+GGG 0.582313 8_1:-57809556 None:intergenic
ATGTTTGAGCCAATGCATCC+GGG 0.591141 8_1:-57810779 None:intergenic
CAAACTTGCGAGCGATGGAG+AGG 0.595122 8_1:-57809033 None:intergenic
ATACATTCATACCTAAGTCA+CGG 0.596054 8_1:-57809087 None:intergenic
CTGCCGGGAATGGTTGAAAG+AGG 0.597430 8_1:+57809718 Msa1203510:CDS
GTCACGGGCGAGGATGGCAA+CGG 0.598987 8_1:-57809071 None:intergenic
ATAGCAAAACTATATATGGA+AGG 0.611900 8_1:-57808915 None:intergenic
TCGCGAGGAGGAGGAAGTGG+TGG 0.617268 8_1:+57810741 Msa1203510:CDS
AGAAACATGGCAAGCTCACG+AGG 0.620180 8_1:+57808971 Msa1203510:CDS
TGGTGAGAGTGTTATGGACC+CGG 0.622308 8_1:+57810761 Msa1203510:CDS
GATTTGCAGATGAAATAGCA+AGG 0.631251 8_1:+57809331 Msa1203510:CDS
GAGCGACATAAATTACGGAC+TGG 0.631742 8_1:-57810911 None:intergenic
ATTTGCAGATGAAATAGCAA+GGG 0.637104 8_1:+57809332 Msa1203510:CDS
TCATACCTAAGTCACGGGCG+AGG 0.643162 8_1:-57809081 None:intergenic
TGAGCTACATGCACTCCTTG+AGG 0.648657 8_1:-57809975 None:intergenic
GAGCACAGTTGAAGGCGCCG+AGG 0.649759 8_1:-57809557 None:intergenic
CATCAGTAACGACATGATTG+CGG 0.650434 8_1:-57810962 None:intergenic
ATTGCAGCCATAGTTGGCGT+CGG 0.656355 8_1:+57808998 Msa1203510:CDS
ACAACAACGATGTCGTCGCG+AGG 0.673569 8_1:+57810726 Msa1203510:CDS
ACAACGATGTCGTCGCGAGG+AGG 0.685555 8_1:+57810729 Msa1203510:CDS
GAGGTGCACGATGAGAAACA+TGG 0.687039 8_1:+57808958 Msa1203510:exon
GTGTGCATGAGACAGGCTGT+GGG 0.704247 8_1:+57809904 Msa1203510:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr8_1:57810139-57810158 None:intergenic 0.0%
!! TAAATAATGATTTATGAATT+AGG + chr8_1:57809693-57809712 Msa1203510:intron 10.0%
!! TACAAATAAAGAATGTATAT+AGG - chr8_1:57808862-57808881 None:intergenic 15.0%
!! TATTGTTAATCATTATGTAA+AGG + chr8_1:57811107-57811126 Msa1203510:three_prime_UTR 15.0%
!! ATTGTTAATCATTATGTAAA+GGG + chr8_1:57811108-57811127 Msa1203510:three_prime_UTR 15.0%
!! ACAAATAGCAAAACTATATA+TGG - chr8_1:57808922-57808941 None:intergenic 20.0%
!!! TTCATCTATAACATACTTTT+TGG + chr8_1:57809126-57809145 Msa1203510:intron 20.0%
!!! ATTATTATCGATGGTTTTAT+TGG + chr8_1:57809999-57810018 Msa1203510:CDS 20.0%
!! ACATAGATGTATATTAGTTA+TGG - chr8_1:57810214-57810233 None:intergenic 20.0%
!!! TGATTTTCTTAAATTATCAG+CGG + chr8_1:57810311-57810330 Msa1203510:intron 20.0%
!!! AGATACCATTTTAGAAATTT+GGG - chr8_1:57810549-57810568 None:intergenic 20.0%
!!! TAAATGACTTGTTATGTTAT+GGG + chr8_1:57810681-57810700 Msa1203510:intron 20.0%
!! AAACATCATGAATTAATTCA+TGG - chr8_1:57811000-57811019 None:intergenic 20.0%
! TAGCAAGCAAAAATAAAAGT+AGG - chr8_1:57808800-57808819 None:intergenic 25.0%
!! CATTCTTTATTTGTAACCTT+AGG + chr8_1:57808867-57808886 Msa1203510:five_prime_UTR 25.0%
! AAGAATTAAGATTTAGCCTA+AGG - chr8_1:57808886-57808905 None:intergenic 25.0%
! ATAGCAAAACTATATATGGA+AGG - chr8_1:57808918-57808937 None:intergenic 25.0%
! TTTACGTTTGATTGAATTGA+AGG + chr8_1:57809248-57809267 Msa1203510:intron 25.0%
! TTACGTTTGATTGAATTGAA+GGG + chr8_1:57809249-57809268 Msa1203510:intron 25.0%
! ATTATAAATTGAACTGATGC+AGG + chr8_1:57809297-57809316 Msa1203510:intron 25.0%
! TTATAAATTGAACTGATGCA+GGG + chr8_1:57809298-57809317 Msa1203510:intron 25.0%
! TAGATGTATATTAGTTATGG+TGG - chr8_1:57810211-57810230 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr8_1:57810286-57810305 None:intergenic 25.0%
!! AGATAAAACGTTCAATTTTC+AGG + chr8_1:57810486-57810505 Msa1203510:intron 25.0%
!! TCTATCCCAAATTTCTAAAA+TGG + chr8_1:57810541-57810560 Msa1203510:intron 25.0%
!!! CAGATACCATTTTAGAAATT+TGG - chr8_1:57810550-57810569 None:intergenic 25.0%
!! ACAATCATCATTTTACATGT+AGG + chr8_1:57810623-57810642 Msa1203510:intron 25.0%
! TAACAAGTCATTTACACAAT+AGG - chr8_1:57810675-57810694 None:intergenic 25.0%
!!! GTAAATGACTTGTTATGTTA+TGG + chr8_1:57810680-57810699 Msa1203510:intron 25.0%
!!! AAATGACTTGTTATGTTATG+GGG + chr8_1:57810682-57810701 Msa1203510:intron 25.0%
GCAAAAATAAAAGTAGGAAG+TGG - chr8_1:57808794-57808813 None:intergenic 30.0%
! TGAATACTAGCCTATACTAT+AGG - chr8_1:57808830-57808849 None:intergenic 30.0%
CAAAACTATATATGGAAGGA+AGG - chr8_1:57808914-57808933 None:intergenic 30.0%
! GCTATTTGTAACCACTATTT+TGG + chr8_1:57808933-57808952 Msa1203510:five_prime_UTR 30.0%
!! ATTTGTAACCACTATTTTGG+TGG + chr8_1:57808936-57808955 Msa1203510:five_prime_UTR 30.0%
ATACATTCATACCTAAGTCA+CGG - chr8_1:57809090-57809109 None:intergenic 30.0%
ATTTGCAGATGAAATAGCAA+GGG + chr8_1:57809332-57809351 Msa1203510:CDS 30.0%
!! AGTGTAAAAGAAGCATTTGA+AGG + chr8_1:57809405-57809424 Msa1203510:CDS 30.0%
GACAGAAACATTTGATATGT+TGG - chr8_1:57809611-57809630 None:intergenic 30.0%
AAAGGAACAATTCTATTCAC+TGG + chr8_1:57809742-57809761 Msa1203510:CDS 30.0%
GTAGCTCATATTATTATCGA+TGG + chr8_1:57809990-57810009 Msa1203510:CDS 30.0%
TGAATGAGAGGAAAAGAAAA+GGG - chr8_1:57810072-57810091 None:intergenic 30.0%
ATGAATGAGAGGAAAAGAAA+AGG - chr8_1:57810073-57810092 None:intergenic 30.0%
TTCCTCTCATTCATATTCAT+TGG + chr8_1:57810079-57810098 Msa1203510:intron 30.0%
TCCTCTCATTCATATTCATT+GGG + chr8_1:57810080-57810099 Msa1203510:intron 30.0%
GGAATGAAATATATGCAAGT+AGG - chr8_1:57810118-57810137 None:intergenic 30.0%
! AGTTATGGTGGAATTAGAAT+AGG - chr8_1:57810199-57810218 None:intergenic 30.0%
AGATCTATGAAGCACAAATA+CGG - chr8_1:57810383-57810402 None:intergenic 30.0%
CTACATACACACAAGATTTA+AGG + chr8_1:57810401-57810420 Msa1203510:intron 30.0%
ATATTGTCAAGAGTTCTACA+TGG + chr8_1:57810459-57810478 Msa1203510:intron 30.0%
!! TTTTACATGTAGGTTTTGTG+AGG + chr8_1:57810633-57810652 Msa1203510:intron 30.0%
!! TTTACATGTAGGTTTTGTGA+GGG + chr8_1:57810634-57810653 Msa1203510:intron 30.0%
TAATGGAGCGACATAAATTA+CGG - chr8_1:57810919-57810938 None:intergenic 30.0%
AGAGAGAGACATGAAAATAA+TGG - chr8_1:57810936-57810955 None:intergenic 30.0%
TCTTATCATCTGCTACTATT+TGG + chr8_1:57811019-57811038 Msa1203510:three_prime_UTR 30.0%
CTTATCATCTGCTACTATTT+GGG + chr8_1:57811020-57811039 Msa1203510:three_prime_UTR 30.0%
!! TAAGCATTGAGATGCTTAAA+TGG - chr8_1:57811146-57811165 None:intergenic 30.0%
!!! GGAATTATTTTGATGCAACA+TGG - chr8_1:57811250-57811269 None:intergenic 30.0%
! CTACTTGCTACCTATAGTAT+AGG + chr8_1:57808817-57808836 Msa1203510:five_prime_UTR 35.0%
TACATTCATACCTAAGTCAC+GGG - chr8_1:57809089-57809108 None:intergenic 35.0%
GATTTGCAGATGAAATAGCA+AGG + chr8_1:57809331-57809350 Msa1203510:CDS 35.0%
TGAAATAGCAAGGGAAGAAA+AGG + chr8_1:57809341-57809360 Msa1203510:CDS 35.0%
! TTTGAAGGTGTACTTTCACT+TGG + chr8_1:57809420-57809439 Msa1203510:CDS 35.0%
! ATGTTGAAAAGGAGTTGGTT+TGG - chr8_1:57809496-57809515 None:intergenic 35.0%
TGGATTGAGAGATGTTGAAA+AGG - chr8_1:57809507-57809526 None:intergenic 35.0%
! ATTTATGAATTAGGTGCTGC+CGG + chr8_1:57809702-57809721 Msa1203510:intron 35.0%
AGAAAAGGGAAAGAAGATCT+AGG - chr8_1:57810058-57810077 None:intergenic 35.0%
TCCCAATGAATATGAATGAG+AGG - chr8_1:57810084-57810103 None:intergenic 35.0%
ACATCTATGTAGACATTCCT+CGG + chr8_1:57810224-57810243 Msa1203510:intron 35.0%
! TATATGTGTCGGTATCGTAT+CGG - chr8_1:57810275-57810294 None:intergenic 35.0%
TCTTAAATTATCAGCGGTGT+CGG + chr8_1:57810317-57810336 Msa1203510:intron 35.0%
ATGAAGCACAAATACGGATT+TGG - chr8_1:57810377-57810396 None:intergenic 35.0%
!! ATGCATTGGCTCAAACATAT+TGG + chr8_1:57810784-57810803 Msa1203510:CDS 35.0%
ATATTGGCATATACACGTTC+AGG + chr8_1:57810800-57810819 Msa1203510:CDS 35.0%
TGAACGAACATCCATTTCTT+GGG - chr8_1:57810841-57810860 None:intergenic 35.0%
ATGAACGAACATCCATTTCT+TGG - chr8_1:57810842-57810861 None:intergenic 35.0%
!! ACATAAATTACGGACTGGTA+GGG - chr8_1:57810909-57810928 None:intergenic 35.0%
!! TTAGAGCTTGTGTTGTTTCT+TGG + chr8_1:57811163-57811182 Msa1203510:three_prime_UTR 35.0%
!! TAGAGCTTGTGTTGTTTCTT+GGG + chr8_1:57811164-57811183 Msa1203510:three_prime_UTR 35.0%
!!! TGTAACCACTATTTTGGTGG+AGG + chr8_1:57808939-57808958 Msa1203510:five_prime_UTR 40.0%
GGTAATATTGCAGCCATAGT+TGG + chr8_1:57808992-57809011 Msa1203510:CDS 40.0%
TAAATTGAACTGATGCAGGG+AGG + chr8_1:57809301-57809320 Msa1203510:intron 40.0%
GAGAGATGTTGAAAAGGAGT+TGG - chr8_1:57809501-57809520 None:intergenic 40.0%
CAAGGGAAGTTTGGAAAGTT+TGG - chr8_1:57809527-57809546 None:intergenic 40.0%
! TTTATGAATTAGGTGCTGCC+GGG + chr8_1:57809703-57809722 Msa1203510:intron 40.0%
TTTCCTCTTTCAACCATTCC+CGG - chr8_1:57809724-57809743 None:intergenic 40.0%
GGAATGGTTGAAAGAGGAAA+AGG + chr8_1:57809724-57809743 Msa1203510:CDS 40.0%
GGTTGCTCTGCTTCTTTAAA+TGG + chr8_1:57809763-57809782 Msa1203510:CDS 40.0%
GCTTCTTTAAATGGCATTGC+AGG + chr8_1:57809772-57809791 Msa1203510:CDS 40.0%
AGAGAACATTGCATTGCATG+TGG + chr8_1:57809880-57809899 Msa1203510:intron 40.0%
TAAACAAACGAAACGCACCT+TGG - chr8_1:57810029-57810048 None:intergenic 40.0%
CACAAATACGGATTTGGACA+CGG - chr8_1:57810371-57810390 None:intergenic 40.0%
TCGCATAGAGGTAATCAAGT+GGG - chr8_1:57810589-57810608 None:intergenic 40.0%
TACGTAAACTAGTCGCATAG+AGG - chr8_1:57810601-57810620 None:intergenic 40.0%
!! TCTATGCGACTAGTTTACGT+AGG + chr8_1:57810600-57810619 Msa1203510:intron 40.0%
!! AGGTTTTGTGAGGGAGAATT+AGG + chr8_1:57810643-57810662 Msa1203510:intron 40.0%
TATGTTTGAGCCAATGCATC+CGG - chr8_1:57810783-57810802 None:intergenic 40.0%
!! GACATAAATTACGGACTGGT+AGG - chr8_1:57810910-57810929 None:intergenic 40.0%
CATCAGTAACGACATGATTG+CGG - chr8_1:57810965-57810984 None:intergenic 40.0%
! ATCTGCTACTATTTGGGACT+TGG + chr8_1:57811026-57811045 Msa1203510:three_prime_UTR 40.0%
!! GGAGTTGGTTTGGATTGAAG+AGG - chr8_1:57809486-57809505 None:intergenic 45.0%
ATGAAACGGCAAGGGAAGTT+TGG - chr8_1:57809536-57809555 None:intergenic 45.0%
TACCTGTTGAGCACAGTTGA+AGG - chr8_1:57809568-57809587 None:intergenic 45.0%
GCTAGAGAATTTCAGCCTCA+AGG + chr8_1:57809960-57809979 Msa1203510:CDS 45.0%
!!! ATGGTTTTATTGGCCCACCA+AGG + chr8_1:57810009-57810028 Msa1203510:CDS 45.0%
ATCAAGACACGTCTAATCCG+AGG - chr8_1:57810244-57810263 None:intergenic 45.0%
ACGGATTTGGACACGGATAT+CGG - chr8_1:57810364-57810383 None:intergenic 45.0%
GTCGCATAGAGGTAATCAAG+TGG - chr8_1:57810590-57810609 None:intergenic 45.0%
TGTTATGTTATGGGGTGCAG+AGG + chr8_1:57810690-57810709 Msa1203510:intron 45.0%
!! AAGTGGTGGTGAGAGTGTTA+TGG + chr8_1:57810755-57810774 Msa1203510:CDS 45.0%
ATGTTTGAGCCAATGCATCC+GGG - chr8_1:57810782-57810801 None:intergenic 45.0%
TTTCTTGGGTCCATGCATTC+CGG - chr8_1:57810827-57810846 None:intergenic 45.0%
GAATGCATGGACCCAAGAAA+TGG + chr8_1:57810827-57810846 Msa1203510:CDS 45.0%
GAGCGACATAAATTACGGAC+TGG - chr8_1:57810914-57810933 None:intergenic 45.0%
GTGCACCTCCACCAAAATAG+TGG - chr8_1:57808947-57808966 None:intergenic 50.0%
GAGGTGCACGATGAGAAACA+TGG + chr8_1:57808958-57808977 Msa1203510:exon 50.0%
AGAAACATGGCAAGCTCACG+AGG + chr8_1:57808971-57808990 Msa1203510:CDS 50.0%
ATTGCAGCCATAGTTGGCGT+CGG + chr8_1:57808998-57809017 Msa1203510:CDS 50.0%
ATTAGGACCGACGCCAACTA+TGG - chr8_1:57809008-57809027 None:intergenic 50.0%
ATGAGCAAACTTGCGAGCGA+TGG - chr8_1:57809041-57809060 None:intergenic 50.0%
! GCTCGCAAGTTTGCTCATGA+AGG + chr8_1:57809043-57809062 Msa1203510:CDS 50.0%
ATGTGGTGTGTGCATGAGAC+AGG + chr8_1:57809897-57809916 Msa1203510:intron 50.0%
TGAGCTACATGCACTCCTTG+AGG - chr8_1:57809978-57809997 None:intergenic 50.0%
CAAACGAAACGCACCTTGGT+GGG - chr8_1:57810025-57810044 None:intergenic 50.0%
ACAAACGAAACGCACCTTGG+TGG - chr8_1:57810026-57810045 None:intergenic 50.0%
! TGTCGGTATCGTATCGGTGT+CGG - chr8_1:57810269-57810288 None:intergenic 50.0%
CACGGATATCGGACACGATA+TGG - chr8_1:57810353-57810372 None:intergenic 50.0%
TATGGGGTGCAGAGGATCAT+CGG + chr8_1:57810698-57810717 Msa1203510:intron 50.0%
!! TGGTGAGAGTGTTATGGACC+CGG + chr8_1:57810761-57810780 Msa1203510:CDS 50.0%
TGTTATGGACCCGGATGCAT+TGG + chr8_1:57810770-57810789 Msa1203510:CDS 50.0%
GGCATATACACGTTCAGGAC+CGG + chr8_1:57810805-57810824 Msa1203510:CDS 50.0%
!! GTTGGCGTCGGTCCTAATCT+CGG + chr8_1:57809010-57809029 Msa1203510:CDS 55.0%
CAAACTTGCGAGCGATGGAG+AGG - chr8_1:57809036-57809055 None:intergenic 55.0%
TCATACCTAAGTCACGGGCG+AGG - chr8_1:57809084-57809103 None:intergenic 55.0%
! TCCCTTGCCGTTTCATCCCT+CGG + chr8_1:57809540-57809559 Msa1203510:CDS 55.0%
CGCCTTCAACTGTGCTCAAC+AGG + chr8_1:57809563-57809582 Msa1203510:CDS 55.0%
! GAATTAGGTGCTGCCGGGAA+TGG + chr8_1:57809708-57809727 Msa1203510:intron 55.0%
CTGCCGGGAATGGTTGAAAG+AGG + chr8_1:57809718-57809737 Msa1203510:CDS 55.0%
TGTGTGCATGAGACAGGCTG+TGG + chr8_1:57809903-57809922 Msa1203510:intron 55.0%
GTGTGCATGAGACAGGCTGT+GGG + chr8_1:57809904-57809923 Msa1203510:intron 55.0%
!! TTATCAGCGGTGTCGGCTGT+CGG + chr8_1:57810324-57810343 Msa1203510:intron 55.0%
ACAACAACGATGTCGTCGCG+AGG + chr8_1:57810726-57810745 Msa1203510:CDS 55.0%
ACGTTCAGGACCGGAATGCA+TGG + chr8_1:57810814-57810833 Msa1203510:CDS 55.0%
GCGATGGAGAGGCCGAGATT+AGG - chr8_1:57809025-57809044 None:intergenic 60.0%
ACCTAAGTCACGGGCGAGGA+TGG - chr8_1:57809080-57809099 None:intergenic 60.0%
GCCGAGGGATGAAACGGCAA+GGG - chr8_1:57809544-57809563 None:intergenic 60.0%
!! GAAGGCGCCGAGGGATGAAA+CGG - chr8_1:57809550-57809569 None:intergenic 60.0%
!! AGCACAGTTGAAGGCGCCGA+GGG - chr8_1:57809559-57809578 None:intergenic 60.0%
ACAACGATGTCGTCGCGAGG+AGG + chr8_1:57810729-57810748 Msa1203510:CDS 60.0%
GTCACGGGCGAGGATGGCAA+CGG - chr8_1:57809074-57809093 None:intergenic 65.0%
GCCATCCTCGCCCGTGACTT+AGG + chr8_1:57809076-57809095 Msa1203510:CDS 65.0%
CGCCGAGGGATGAAACGGCA+AGG - chr8_1:57809545-57809564 None:intergenic 65.0%
!! GAGCACAGTTGAAGGCGCCG+AGG - chr8_1:57809560-57809579 None:intergenic 65.0%
ACGATGTCGTCGCGAGGAGG+AGG + chr8_1:57810732-57810751 Msa1203510:CDS 65.0%
TCGTCGCGAGGAGGAGGAAG+TGG + chr8_1:57810738-57810757 Msa1203510:CDS 65.0%
TCGCGAGGAGGAGGAAGTGG+TGG + chr8_1:57810741-57810760 Msa1203510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 57808786 57811273 57808786 ID=Msa1203510;Name=Msa1203510
chr8_1 mRNA 57808786 57811273 57808786 ID=Msa1203510-mRNA-1;Parent=Msa1203510;Name=Msa1203510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=182|1|1|1|1|1|5|401|254
chr8_1 exon 57808786 57809097 57808786 ID=Msa1203510-mRNA-1:exon:18893;Parent=Msa1203510-mRNA-1
chr8_1 exon 57809319 57809584 57809319 ID=Msa1203510-mRNA-1:exon:18894;Parent=Msa1203510-mRNA-1
chr8_1 exon 57809715 57809808 57809715 ID=Msa1203510-mRNA-1:exon:18895;Parent=Msa1203510-mRNA-1
chr8_1 exon 57809919 57810030 57809919 ID=Msa1203510-mRNA-1:exon:18896;Parent=Msa1203510-mRNA-1
chr8_1 exon 57810710 57811273 57810710 ID=Msa1203510-mRNA-1:exon:18897;Parent=Msa1203510-mRNA-1
chr8_1 five_prime_UTR 57808786 57808967 57808786 ID=Msa1203510-mRNA-1:five_prime_utr;Parent=Msa1203510-mRNA-1
chr8_1 CDS 57808968 57809097 57808968 ID=Msa1203510-mRNA-1:cds;Parent=Msa1203510-mRNA-1
chr8_1 CDS 57809319 57809584 57809319 ID=Msa1203510-mRNA-1:cds;Parent=Msa1203510-mRNA-1
chr8_1 CDS 57809715 57809808 57809715 ID=Msa1203510-mRNA-1:cds;Parent=Msa1203510-mRNA-1
chr8_1 CDS 57809919 57810030 57809919 ID=Msa1203510-mRNA-1:cds;Parent=Msa1203510-mRNA-1
chr8_1 CDS 57810710 57810872 57810710 ID=Msa1203510-mRNA-1:cds;Parent=Msa1203510-mRNA-1
chr8_1 three_prime_UTR 57810873 57811273 57810873 ID=Msa1203510-mRNA-1:three_prime_utr;Parent=Msa1203510-mRNA-1
Gene Sequence

>Msa1203510

ATGAGAAACATGGCAAGCTCACGAGGTAATATTGCAGCCATAGTTGGCGTCGGTCCTAATCTCGGCCTCTCCATCGCTCGCAAGTTTGCTCATGAAGGTTACACCGTTGCCATCCTCGCCCGTGACTTAGGGAGGTTATCAAGATTTGCAGATGAAATAGCAAGGGAAGAAAAGGCACAAGTGTTTGCTATAAGAATTGATTGTTCAGATTCAAGAAGTGTAAAAGAAGCATTTGAAGGTGTACTTTCACTTGGATTTGTTGAAGTTCTTGTTTATAATGCTAATTATGAGTCACCTCTTCAATCCAAACCAACTCCTTTTCAACATCTCTCAATCCAAACTTTCCAAACTTCCCTTGCCGTTTCATCCCTCGGCGCCTTCAACTGTGCTCAACAGGTGCTGCCGGGAATGGTTGAAAGAGGAAAAGGAACAATTCTATTCACTGGTTGCTCTGCTTCTTTAAATGGCATTGCAGGATACTCAGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCACAATGCATTGCTAGAGAATTTCAGCCTCAAGGAGTGCATGTAGCTCATATTATTATCGATGGTTTTATTGGCCCACCAAGAGGATCATCGGCAACAACAACAACGATGTCGTCGCGAGGAGGAGGAAGTGGTGGTGAGAGTGTTATGGACCCGGATGCATTGGCTCAAACATATTGGCATATACACGTTCAGGACCGGAATGCATGGACCCAAGAAATGGATGTTCGTTCATCGAACTTCTAG

Protein sequence

>Msa1203510

MRNMASSRGNIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVKEAFEGVLSLGFVEVLVYNANYESPLQSKPTPFQHLSIQTFQTSLAVSSLGAFNCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCIAREFQPQGVHVAHIIIDGFIGPPRGSSATTTTMSSRGGGSGGESVMDPDALAQTYWHIHVQDRNAWTQEMDVRSSNF*