AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255880 MtrunA17_Chr8g0374711 98.031 254 3 1 1 254 1 252 0.0 511
Msa1255880 MtrunA17_Chr2g0287951 25.967 181 123 3 14 191 40 212 8.74e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255880 AT3G50560.1 67.164 268 73 2 1 253 2 269 5.84e-126 358

Find 94 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTTGTAACCACTATTT+TGG 0.164809 8_2:-55221202 Msa1255880:five_prime_UTR
TCTTATCATCTGCTACTATT+TGG 0.178737 8_2:-55219115 Msa1255880:three_prime_UTR
GGTTGCTCTGCTTCTTTAAA+TGG 0.216932 8_2:-55220372 Msa1255880:CDS
TTAGAGCTTGTGTTGTTTCT+TGG 0.236020 8_2:-55218971 Msa1255880:three_prime_UTR
CAAGGGAAGTTTGGAAAGTT+TGG 0.239457 8_2:+55220611 None:intergenic
CTTATCATCTGCTACTATTT+GGG 0.245781 8_2:-55219114 Msa1255880:three_prime_UTR
TAAGCATTGAGATGCTTAAA+TGG 0.283471 8_2:+55218991 None:intergenic
GCTTCTTTAAATGGCATTGC+AGG 0.309696 8_2:-55220363 Msa1255880:CDS
ATTGTTAATCATTATGTAAA+GGG 0.319631 8_2:-55219026 Msa1255880:three_prime_UTR
ACAAATAGCAAAACTATATA+TGG 0.323032 8_2:+55221216 None:intergenic
ATGAACGAACATCCATTTCT+TGG 0.333809 8_2:+55219295 None:intergenic
AAACATCATGAATTAATTCA+TGG 0.349882 8_2:+55219137 None:intergenic
TAGAGCTTGTGTTGTTTCTT+GGG 0.350537 8_2:-55218970 Msa1255880:three_prime_UTR
CGCCTTCAACTGTGCTCAAC+AGG 0.354644 8_2:-55220572 Msa1255880:intron
AGAGAGAGACATGAAAATAA+TGG 0.355572 8_2:+55219201 None:intergenic
ATTAGGACCGACGCCAACTA+TGG 0.357925 8_2:+55221130 None:intergenic
ATGAAACGGCAAGGGAAGTT+TGG 0.367798 8_2:+55220602 None:intergenic
TTTCCTCTTTCAACCATTCC+CGG 0.371758 8_2:+55220414 None:intergenic
TTTCTTGGGTCCATGCATTC+CGG 0.380172 8_2:+55219310 None:intergenic
TCCCTTGCCGTTTCATCCCT+CGG 0.388630 8_2:-55220595 Msa1255880:CDS
ATGCATTGGCTCAAACATAT+TGG 0.404371 8_2:-55219350 Msa1255880:CDS
ATCTGCTACTATTTGGGACT+TGG 0.419999 8_2:-55219108 Msa1255880:three_prime_UTR
ATGTTGAAAAGGAGTTGGTT+TGG 0.421399 8_2:+55220642 None:intergenic
TATGTTTGAGCCAATGCATC+CGG 0.433151 8_2:+55219354 None:intergenic
AAGAATTAAGATTTAGCCTA+AGG 0.435850 8_2:+55221252 None:intergenic
TGGATTGAGAGATGTTGAAA+AGG 0.438146 8_2:+55220631 None:intergenic
TATTGTTAATCATTATGTAA+AGG 0.439250 8_2:-55219027 Msa1255880:three_prime_UTR
TACAAATAAAGAATGTATAT+AGG 0.447052 8_2:+55221276 None:intergenic
CATTCTTTATTTGTAACCTT+AGG 0.448531 8_2:-55221268 Msa1255880:five_prime_UTR
AGTGTAAAAGAAGCATTTGA+AGG 0.449118 8_2:-55220730 Msa1255880:CDS
GCCATCCTCGCCCGTGACTT+AGG 0.454853 8_2:-55221059 Msa1255880:intron
CTACTTGCTACCTATAGTAT+AGG 0.457899 8_2:-55221318 Msa1255880:five_prime_UTR
TGAACGAACATCCATTTCTT+GGG 0.457910 8_2:+55219296 None:intergenic
GGTAATATTGCAGCCATAGT+TGG 0.459882 8_2:-55221143 Msa1255880:CDS
GAATGCATGGACCCAAGAAA+TGG 0.461502 8_2:-55219307 Msa1255880:CDS
TAATGGAGCGACATAAATTA+CGG 0.467636 8_2:+55219218 None:intergenic
AAAGGAACAATTCTATTCAC+TGG 0.475162 8_2:-55220393 Msa1255880:CDS
TGAATACTAGCCTATACTAT+AGG 0.478254 8_2:+55221308 None:intergenic
TGAAATAGCAAGGGAAGAAA+AGG 0.479373 8_2:-55220794 Msa1255880:CDS
TACCTGTTGAGCACAGTTGA+AGG 0.480690 8_2:+55220570 None:intergenic
GCTCGCAAGTTTGCTCATGA+AGG 0.481049 8_2:-55221092 Msa1255880:CDS
GCGATGGAGAGGCCGAGATT+AGG 0.485603 8_2:+55221113 None:intergenic
GAGAGATGTTGAAAAGGAGT+TGG 0.485715 8_2:+55220637 None:intergenic
AAGTGGTGGTGAGAGTGTTA+TGG 0.486623 8_2:-55219379 Msa1255880:CDS
ATTTATGAATTAGGTGCTGC+CGG 0.492617 8_2:-55220433 Msa1255880:intron
TCGTCGCGAGGAGGAGGAAG+TGG 0.500915 8_2:-55219396 Msa1255880:CDS
ATATTGGCATATACACGTTC+AGG 0.501804 8_2:-55219334 Msa1255880:CDS
ACCTAAGTCACGGGCGAGGA+TGG 0.502538 8_2:+55221058 None:intergenic
GTGCACCTCCACCAAAATAG+TGG 0.508075 8_2:+55221191 None:intergenic
TTTGAAGGTGTACTTTCACT+TGG 0.508660 8_2:-55220715 Msa1255880:CDS
TGTTATGGACCCGGATGCAT+TGG 0.516123 8_2:-55219364 Msa1255880:CDS
GGCATATACACGTTCAGGAC+CGG 0.520194 8_2:-55219329 Msa1255880:CDS
GTAGCTCATATTATTATCGA+TGG 0.524070 8_2:-55220145 Msa1255880:CDS
ACGATGTCGTCGCGAGGAGG+AGG 0.527856 8_2:-55219402 Msa1255880:CDS
CAAACGAAACGCACCTTGGT+GGG 0.529770 8_2:+55220113 None:intergenic
ACAAACGAAACGCACCTTGG+TGG 0.530352 8_2:+55220112 None:intergenic
ATGAGCAAACTTGCGAGCGA+TGG 0.536721 8_2:+55221097 None:intergenic
TACATTCATACCTAAGTCAC+GGG 0.542393 8_2:+55221049 None:intergenic
GAAGGCGCCGAGGGATGAAA+CGG 0.542643 8_2:+55220588 None:intergenic
CAAAACTATATATGGAAGGA+AGG 0.544164 8_2:+55221224 None:intergenic
GAATTAGGTGCTGCCGGGAA+TGG 0.547598 8_2:-55220427 Msa1255880:intron
GACATAAATTACGGACTGGT+AGG 0.548055 8_2:+55219227 None:intergenic
GGAATGGTTGAAAGAGGAAA+AGG 0.550184 8_2:-55220411 Msa1255880:CDS
CGCCGAGGGATGAAACGGCA+AGG 0.552431 8_2:+55220593 None:intergenic
GCTAGAGAATTTCAGCCTCA+AGG 0.567416 8_2:-55220175 Msa1255880:CDS
ACGTTCAGGACCGGAATGCA+TGG 0.567516 8_2:-55219320 Msa1255880:CDS
TTTATGAATTAGGTGCTGCC+GGG 0.568009 8_2:-55220432 Msa1255880:intron
ACATAAATTACGGACTGGTA+GGG 0.571986 8_2:+55219228 None:intergenic
GGAGTTGGTTTGGATTGAAG+AGG 0.572556 8_2:+55220652 None:intergenic
TATGGGGTGCAGAGGATCAT+CGG 0.575217 8_2:-55219436 Msa1255880:intron
GTTGGCGTCGGTCCTAATCT+CGG 0.576317 8_2:-55221125 Msa1255880:CDS
GCCGAGGGATGAAACGGCAA+GGG 0.581874 8_2:+55220594 None:intergenic
AGCACAGTTGAAGGCGCCGA+GGG 0.582313 8_2:+55220579 None:intergenic
ATGTTTGAGCCAATGCATCC+GGG 0.591141 8_2:+55219355 None:intergenic
CAAACTTGCGAGCGATGGAG+AGG 0.595122 8_2:+55221102 None:intergenic
ATACATTCATACCTAAGTCA+CGG 0.596054 8_2:+55221048 None:intergenic
CTGCCGGGAATGGTTGAAAG+AGG 0.597430 8_2:-55220417 Msa1255880:CDS
GTCACGGGCGAGGATGGCAA+CGG 0.598987 8_2:+55221064 None:intergenic
ATAGCAAAACTATATATGGA+AGG 0.611900 8_2:+55221220 None:intergenic
TCGCGAGGAGGAGGAAGTGG+TGG 0.617268 8_2:-55219393 Msa1255880:CDS
AGAAACATGGCAAGCTCACG+AGG 0.620180 8_2:-55221164 Msa1255880:CDS
TGGTGAGAGTGTTATGGACC+CGG 0.622308 8_2:-55219373 Msa1255880:CDS
GATTTGCAGATGAAATAGCA+AGG 0.631251 8_2:-55220804 Msa1255880:CDS
GAGCGACATAAATTACGGAC+TGG 0.631742 8_2:+55219223 None:intergenic
ATTTGCAGATGAAATAGCAA+GGG 0.637104 8_2:-55220803 Msa1255880:CDS
TCATACCTAAGTCACGGGCG+AGG 0.643162 8_2:+55221054 None:intergenic
TGAGCTACATGCACTCCTTG+AGG 0.648657 8_2:+55220160 None:intergenic
GAGCACAGTTGAAGGCGCCG+AGG 0.649759 8_2:+55220578 None:intergenic
CATCAGTAACGACATGATTG+CGG 0.650434 8_2:+55219172 None:intergenic
ATTGCAGCCATAGTTGGCGT+CGG 0.656355 8_2:-55221137 Msa1255880:CDS
ACAACAACGATGTCGTCGCG+AGG 0.673569 8_2:-55219408 Msa1255880:CDS
ACAACGATGTCGTCGCGAGG+AGG 0.685555 8_2:-55219405 Msa1255880:CDS
GAGGTGCACGATGAGAAACA+TGG 0.687039 8_2:-55221177 Msa1255880:exon
GTGTGCATGAGACAGGCTGT+GGG 0.704247 8_2:-55220231 Msa1255880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAA+TGG + chr8_2:55220236-55220255 None:intergenic 0.0%
!! TAAATAATGATTTATGAATT+AGG - chr8_2:55219790-55219809 Msa1255880:intron 10.0%
!! TACAAATAAAGAATGTATAT+AGG + chr8_2:55218959-55218978 None:intergenic 15.0%
!! TATTGTTAATCATTATGTAA+AGG - chr8_2:55221205-55221224 Msa1255880:five_prime_UTR 15.0%
!! ATTGTTAATCATTATGTAAA+GGG - chr8_2:55221206-55221225 Msa1255880:five_prime_UTR 15.0%
!! ACAAATAGCAAAACTATATA+TGG + chr8_2:55219019-55219038 None:intergenic 20.0%
!!! TTCATCTATAACATACTTTT+TGG - chr8_2:55219223-55219242 Msa1255880:three_prime_UTR 20.0%
!!! ATTATTATCGATGGTTTTAT+TGG - chr8_2:55220096-55220115 Msa1255880:intron 20.0%
!! ACATAGATGTATATTAGTTA+TGG + chr8_2:55220312-55220331 None:intergenic 20.0%
!!! TGATTTTCTTAAATTATCAG+CGG - chr8_2:55220409-55220428 Msa1255880:CDS 20.0%
!!! AGATACCATTTTAGAAATTT+GGG + chr8_2:55220647-55220666 None:intergenic 20.0%
!!! TAAATGACTTGTTATGTTAT+GGG - chr8_2:55220779-55220798 Msa1255880:CDS 20.0%
!! AAACATCATGAATTAATTCA+TGG + chr8_2:55221098-55221117 None:intergenic 20.0%
! TAGCAAGCAAAAATAAAAGT+AGG + chr8_2:55218897-55218916 None:intergenic 25.0%
!! CATTCTTTATTTGTAACCTT+AGG - chr8_2:55218964-55218983 Msa1255880:three_prime_UTR 25.0%
! AAGAATTAAGATTTAGCCTA+AGG + chr8_2:55218983-55219002 None:intergenic 25.0%
! ATAGCAAAACTATATATGGA+AGG + chr8_2:55219015-55219034 None:intergenic 25.0%
! TTTACGTTTGATTGAATTGA+AGG - chr8_2:55219345-55219364 Msa1255880:CDS 25.0%
! TTACGTTTGATTGAATTGAA+GGG - chr8_2:55219346-55219365 Msa1255880:CDS 25.0%
! ATTATAAATTGAACTGATGC+AGG - chr8_2:55219394-55219413 Msa1255880:CDS 25.0%
! TTATAAATTGAACTGATGCA+GGG - chr8_2:55219395-55219414 Msa1255880:CDS 25.0%
! TAGATGTATATTAGTTATGG+TGG + chr8_2:55220309-55220328 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr8_2:55220384-55220403 None:intergenic 25.0%
!! AGATAAAACGTTCAATTTTC+AGG - chr8_2:55220584-55220603 Msa1255880:CDS 25.0%
!! TCTATCCCAAATTTCTAAAA+TGG - chr8_2:55220639-55220658 Msa1255880:CDS 25.0%
!!! CAGATACCATTTTAGAAATT+TGG + chr8_2:55220648-55220667 None:intergenic 25.0%
!! ACAATCATCATTTTACATGT+AGG - chr8_2:55220721-55220740 Msa1255880:CDS 25.0%
! TAACAAGTCATTTACACAAT+AGG + chr8_2:55220773-55220792 None:intergenic 25.0%
!!! GTAAATGACTTGTTATGTTA+TGG - chr8_2:55220778-55220797 Msa1255880:CDS 25.0%
!!! AAATGACTTGTTATGTTATG+GGG - chr8_2:55220780-55220799 Msa1255880:CDS 25.0%
GCAAAAATAAAAGTAGGAAG+TGG + chr8_2:55218891-55218910 None:intergenic 30.0%
! TGAATACTAGCCTATACTAT+AGG + chr8_2:55218927-55218946 None:intergenic 30.0%
CAAAACTATATATGGAAGGA+AGG + chr8_2:55219011-55219030 None:intergenic 30.0%
! GCTATTTGTAACCACTATTT+TGG - chr8_2:55219030-55219049 Msa1255880:three_prime_UTR 30.0%
!! ATTTGTAACCACTATTTTGG+TGG - chr8_2:55219033-55219052 Msa1255880:three_prime_UTR 30.0%
ATACATTCATACCTAAGTCA+CGG + chr8_2:55219187-55219206 None:intergenic 30.0%
ATTTGCAGATGAAATAGCAA+GGG - chr8_2:55219429-55219448 Msa1255880:intron 30.0%
!! AGTGTAAAAGAAGCATTTGA+AGG - chr8_2:55219502-55219521 Msa1255880:intron 30.0%
GACAGAAACATTTGATATGT+TGG + chr8_2:55219708-55219727 None:intergenic 30.0%
AAAGGAACAATTCTATTCAC+TGG - chr8_2:55219839-55219858 Msa1255880:intron 30.0%
GTAGCTCATATTATTATCGA+TGG - chr8_2:55220087-55220106 Msa1255880:intron 30.0%
TGAATGAGAGGAAAAGAAAA+GGG + chr8_2:55220169-55220188 None:intergenic 30.0%
ATGAATGAGAGGAAAAGAAA+AGG + chr8_2:55220170-55220189 None:intergenic 30.0%
TTCCTCTCATTCATATTCAT+TGG - chr8_2:55220176-55220195 Msa1255880:CDS 30.0%
TCCTCTCATTCATATTCATT+GGG - chr8_2:55220177-55220196 Msa1255880:CDS 30.0%
GGAATGAAATATATGCAAGT+AGG + chr8_2:55220215-55220234 None:intergenic 30.0%
! AGTTATGGTGGAATTAGAAT+AGG + chr8_2:55220297-55220316 None:intergenic 30.0%
AGATCTATGAAGCACAAATA+CGG + chr8_2:55220481-55220500 None:intergenic 30.0%
CTACATACACACAAGATTTA+AGG - chr8_2:55220499-55220518 Msa1255880:intron 30.0%
ATATTGTCAAGAGTTCTACA+TGG - chr8_2:55220557-55220576 Msa1255880:intron 30.0%
!! TTTTACATGTAGGTTTTGTG+AGG - chr8_2:55220731-55220750 Msa1255880:CDS 30.0%
!! TTTACATGTAGGTTTTGTGA+GGG - chr8_2:55220732-55220751 Msa1255880:CDS 30.0%
TAATGGAGCGACATAAATTA+CGG + chr8_2:55221017-55221036 None:intergenic 30.0%
AGAGAGAGACATGAAAATAA+TGG + chr8_2:55221034-55221053 None:intergenic 30.0%
TCTTATCATCTGCTACTATT+TGG - chr8_2:55221117-55221136 Msa1255880:CDS 30.0%
CTTATCATCTGCTACTATTT+GGG - chr8_2:55221118-55221137 Msa1255880:CDS 30.0%
!! TAAGCATTGAGATGCTTAAA+TGG + chr8_2:55221244-55221263 None:intergenic 30.0%
!!! GGAATTATTTTGATGCAACA+TGG + chr8_2:55221348-55221367 None:intergenic 30.0%
! CTACTTGCTACCTATAGTAT+AGG - chr8_2:55218914-55218933 Msa1255880:three_prime_UTR 35.0%
TACATTCATACCTAAGTCAC+GGG + chr8_2:55219186-55219205 None:intergenic 35.0%
GATTTGCAGATGAAATAGCA+AGG - chr8_2:55219428-55219447 Msa1255880:intron 35.0%
TGAAATAGCAAGGGAAGAAA+AGG - chr8_2:55219438-55219457 Msa1255880:intron 35.0%
! TTTGAAGGTGTACTTTCACT+TGG - chr8_2:55219517-55219536 Msa1255880:intron 35.0%
! ATGTTGAAAAGGAGTTGGTT+TGG + chr8_2:55219593-55219612 None:intergenic 35.0%
TGGATTGAGAGATGTTGAAA+AGG + chr8_2:55219604-55219623 None:intergenic 35.0%
! ATTTATGAATTAGGTGCTGC+CGG - chr8_2:55219799-55219818 Msa1255880:intron 35.0%
AGAAAAGGGAAAGAAGATCT+AGG + chr8_2:55220155-55220174 None:intergenic 35.0%
TCCCAATGAATATGAATGAG+AGG + chr8_2:55220181-55220200 None:intergenic 35.0%
ACATCTATGTAGACATTCCT+CGG - chr8_2:55220322-55220341 Msa1255880:intron 35.0%
! TATATGTGTCGGTATCGTAT+CGG + chr8_2:55220373-55220392 None:intergenic 35.0%
TCTTAAATTATCAGCGGTGT+CGG - chr8_2:55220415-55220434 Msa1255880:CDS 35.0%
ATGAAGCACAAATACGGATT+TGG + chr8_2:55220475-55220494 None:intergenic 35.0%
!! ATGCATTGGCTCAAACATAT+TGG - chr8_2:55220882-55220901 Msa1255880:intron 35.0%
ATATTGGCATATACACGTTC+AGG - chr8_2:55220898-55220917 Msa1255880:intron 35.0%
TGAACGAACATCCATTTCTT+GGG + chr8_2:55220939-55220958 None:intergenic 35.0%
ATGAACGAACATCCATTTCT+TGG + chr8_2:55220940-55220959 None:intergenic 35.0%
!! ACATAAATTACGGACTGGTA+GGG + chr8_2:55221007-55221026 None:intergenic 35.0%
!! TTAGAGCTTGTGTTGTTTCT+TGG - chr8_2:55221261-55221280 Msa1255880:five_prime_UTR 35.0%
!! TAGAGCTTGTGTTGTTTCTT+GGG - chr8_2:55221262-55221281 Msa1255880:five_prime_UTR 35.0%
!!! TGTAACCACTATTTTGGTGG+AGG - chr8_2:55219036-55219055 Msa1255880:three_prime_UTR 40.0%
GGTAATATTGCAGCCATAGT+TGG - chr8_2:55219089-55219108 Msa1255880:three_prime_UTR 40.0%
TAAATTGAACTGATGCAGGG+AGG - chr8_2:55219398-55219417 Msa1255880:CDS 40.0%
GAGAGATGTTGAAAAGGAGT+TGG + chr8_2:55219598-55219617 None:intergenic 40.0%
CAAGGGAAGTTTGGAAAGTT+TGG + chr8_2:55219624-55219643 None:intergenic 40.0%
! TTTATGAATTAGGTGCTGCC+GGG - chr8_2:55219800-55219819 Msa1255880:intron 40.0%
TTTCCTCTTTCAACCATTCC+CGG + chr8_2:55219821-55219840 None:intergenic 40.0%
GGAATGGTTGAAAGAGGAAA+AGG - chr8_2:55219821-55219840 Msa1255880:intron 40.0%
GGTTGCTCTGCTTCTTTAAA+TGG - chr8_2:55219860-55219879 Msa1255880:intron 40.0%
GCTTCTTTAAATGGCATTGC+AGG - chr8_2:55219869-55219888 Msa1255880:intron 40.0%
AGAGAACATTGCATTGCATG+TGG - chr8_2:55219977-55219996 Msa1255880:intron 40.0%
TAAACAAACGAAACGCACCT+TGG + chr8_2:55220126-55220145 None:intergenic 40.0%
CACAAATACGGATTTGGACA+CGG + chr8_2:55220469-55220488 None:intergenic 40.0%
TCGCATAGAGGTAATCAAGT+GGG + chr8_2:55220687-55220706 None:intergenic 40.0%
TACGTAAACTAGTCGCATAG+AGG + chr8_2:55220699-55220718 None:intergenic 40.0%
!! TCTATGCGACTAGTTTACGT+AGG - chr8_2:55220698-55220717 Msa1255880:CDS 40.0%
!! AGGTTTTGTGAGGGAGAATT+AGG - chr8_2:55220741-55220760 Msa1255880:CDS 40.0%
TATGTTTGAGCCAATGCATC+CGG + chr8_2:55220881-55220900 None:intergenic 40.0%
!! GACATAAATTACGGACTGGT+AGG + chr8_2:55221008-55221027 None:intergenic 40.0%
CATCAGTAACGACATGATTG+CGG + chr8_2:55221063-55221082 None:intergenic 40.0%
! ATCTGCTACTATTTGGGACT+TGG - chr8_2:55221124-55221143 Msa1255880:CDS 40.0%
!! GGAGTTGGTTTGGATTGAAG+AGG + chr8_2:55219583-55219602 None:intergenic 45.0%
ATGAAACGGCAAGGGAAGTT+TGG + chr8_2:55219633-55219652 None:intergenic 45.0%
TACCTGTTGAGCACAGTTGA+AGG + chr8_2:55219665-55219684 None:intergenic 45.0%
GCTAGAGAATTTCAGCCTCA+AGG - chr8_2:55220057-55220076 Msa1255880:intron 45.0%
!!! ATGGTTTTATTGGCCCACCA+AGG - chr8_2:55220106-55220125 Msa1255880:intron 45.0%
ATCAAGACACGTCTAATCCG+AGG + chr8_2:55220342-55220361 None:intergenic 45.0%
ACGGATTTGGACACGGATAT+CGG + chr8_2:55220462-55220481 None:intergenic 45.0%
GTCGCATAGAGGTAATCAAG+TGG + chr8_2:55220688-55220707 None:intergenic 45.0%
TGTTATGTTATGGGGTGCAG+AGG - chr8_2:55220788-55220807 Msa1255880:CDS 45.0%
!! AAGTGGTGGTGAGAGTGTTA+TGG - chr8_2:55220853-55220872 Msa1255880:intron 45.0%
ATGTTTGAGCCAATGCATCC+GGG + chr8_2:55220880-55220899 None:intergenic 45.0%
TTTCTTGGGTCCATGCATTC+CGG + chr8_2:55220925-55220944 None:intergenic 45.0%
GAATGCATGGACCCAAGAAA+TGG - chr8_2:55220925-55220944 Msa1255880:intron 45.0%
GAGCGACATAAATTACGGAC+TGG + chr8_2:55221012-55221031 None:intergenic 45.0%
GTGCACCTCCACCAAAATAG+TGG + chr8_2:55219044-55219063 None:intergenic 50.0%
GAGGTGCACGATGAGAAACA+TGG - chr8_2:55219055-55219074 Msa1255880:three_prime_UTR 50.0%
AGAAACATGGCAAGCTCACG+AGG - chr8_2:55219068-55219087 Msa1255880:three_prime_UTR 50.0%
ATTGCAGCCATAGTTGGCGT+CGG - chr8_2:55219095-55219114 Msa1255880:three_prime_UTR 50.0%
ATTAGGACCGACGCCAACTA+TGG + chr8_2:55219105-55219124 None:intergenic 50.0%
ATGAGCAAACTTGCGAGCGA+TGG + chr8_2:55219138-55219157 None:intergenic 50.0%
! GCTCGCAAGTTTGCTCATGA+AGG - chr8_2:55219140-55219159 Msa1255880:three_prime_UTR 50.0%
ATGTGGTGTGTGCATGAGAC+AGG - chr8_2:55219994-55220013 Msa1255880:intron 50.0%
TGAGCTACATGCACTCCTTG+AGG + chr8_2:55220075-55220094 None:intergenic 50.0%
CAAACGAAACGCACCTTGGT+GGG + chr8_2:55220122-55220141 None:intergenic 50.0%
ACAAACGAAACGCACCTTGG+TGG + chr8_2:55220123-55220142 None:intergenic 50.0%
! TGTCGGTATCGTATCGGTGT+CGG + chr8_2:55220367-55220386 None:intergenic 50.0%
CACGGATATCGGACACGATA+TGG + chr8_2:55220451-55220470 None:intergenic 50.0%
TATGGGGTGCAGAGGATCAT+CGG - chr8_2:55220796-55220815 Msa1255880:CDS 50.0%
!! TGGTGAGAGTGTTATGGACC+CGG - chr8_2:55220859-55220878 Msa1255880:intron 50.0%
TGTTATGGACCCGGATGCAT+TGG - chr8_2:55220868-55220887 Msa1255880:intron 50.0%
GGCATATACACGTTCAGGAC+CGG - chr8_2:55220903-55220922 Msa1255880:intron 50.0%
!! GTTGGCGTCGGTCCTAATCT+CGG - chr8_2:55219107-55219126 Msa1255880:three_prime_UTR 55.0%
CAAACTTGCGAGCGATGGAG+AGG + chr8_2:55219133-55219152 None:intergenic 55.0%
TCATACCTAAGTCACGGGCG+AGG + chr8_2:55219181-55219200 None:intergenic 55.0%
! TCCCTTGCCGTTTCATCCCT+CGG - chr8_2:55219637-55219656 Msa1255880:intron 55.0%
CGCCTTCAACTGTGCTCAAC+AGG - chr8_2:55219660-55219679 Msa1255880:intron 55.0%
! GAATTAGGTGCTGCCGGGAA+TGG - chr8_2:55219805-55219824 Msa1255880:intron 55.0%
CTGCCGGGAATGGTTGAAAG+AGG - chr8_2:55219815-55219834 Msa1255880:intron 55.0%
TGTGTGCATGAGACAGGCTG+TGG - chr8_2:55220000-55220019 Msa1255880:intron 55.0%
GTGTGCATGAGACAGGCTGT+GGG - chr8_2:55220001-55220020 Msa1255880:intron 55.0%
!! TTATCAGCGGTGTCGGCTGT+CGG - chr8_2:55220422-55220441 Msa1255880:CDS 55.0%
ACAACAACGATGTCGTCGCG+AGG - chr8_2:55220824-55220843 Msa1255880:intron 55.0%
ACGTTCAGGACCGGAATGCA+TGG - chr8_2:55220912-55220931 Msa1255880:intron 55.0%
GCGATGGAGAGGCCGAGATT+AGG + chr8_2:55219122-55219141 None:intergenic 60.0%
ACCTAAGTCACGGGCGAGGA+TGG + chr8_2:55219177-55219196 None:intergenic 60.0%
GCCGAGGGATGAAACGGCAA+GGG + chr8_2:55219641-55219660 None:intergenic 60.0%
!! GAAGGCGCCGAGGGATGAAA+CGG + chr8_2:55219647-55219666 None:intergenic 60.0%
!! AGCACAGTTGAAGGCGCCGA+GGG + chr8_2:55219656-55219675 None:intergenic 60.0%
ACAACGATGTCGTCGCGAGG+AGG - chr8_2:55220827-55220846 Msa1255880:intron 60.0%
GTCACGGGCGAGGATGGCAA+CGG + chr8_2:55219171-55219190 None:intergenic 65.0%
GCCATCCTCGCCCGTGACTT+AGG - chr8_2:55219173-55219192 Msa1255880:three_prime_UTR 65.0%
CGCCGAGGGATGAAACGGCA+AGG + chr8_2:55219642-55219661 None:intergenic 65.0%
!! GAGCACAGTTGAAGGCGCCG+AGG + chr8_2:55219657-55219676 None:intergenic 65.0%
ACGATGTCGTCGCGAGGAGG+AGG - chr8_2:55220830-55220849 Msa1255880:intron 65.0%
TCGTCGCGAGGAGGAGGAAG+TGG - chr8_2:55220836-55220855 Msa1255880:intron 65.0%
TCGCGAGGAGGAGGAAGTGG+TGG - chr8_2:55220839-55220858 Msa1255880:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 55218883 55221371 55218883 ID=Msa1255880;Name=Msa1255880
chr8_2 mRNA 55218883 55221371 55218883 ID=Msa1255880-mRNA-1;Parent=Msa1255880;Name=Msa1255880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=182|1|1|1|1|1|5|401|254
chr8_2 exon 55218883 55219446 55218883 ID=Msa1255880-mRNA-1:exon:17073;Parent=Msa1255880-mRNA-1
chr8_2 exon 55220127 55220238 55220127 ID=Msa1255880-mRNA-1:exon:17072;Parent=Msa1255880-mRNA-1
chr8_2 exon 55220349 55220442 55220349 ID=Msa1255880-mRNA-1:exon:17071;Parent=Msa1255880-mRNA-1
chr8_2 exon 55220573 55220838 55220573 ID=Msa1255880-mRNA-1:exon:17070;Parent=Msa1255880-mRNA-1
chr8_2 exon 55221060 55221371 55221060 ID=Msa1255880-mRNA-1:exon:17069;Parent=Msa1255880-mRNA-1
chr8_2 five_prime_UTR 55221190 55221371 55221190 ID=Msa1255880-mRNA-1:five_prime_utr;Parent=Msa1255880-mRNA-1
chr8_2 CDS 55221060 55221189 55221060 ID=Msa1255880-mRNA-1:cds;Parent=Msa1255880-mRNA-1
chr8_2 CDS 55220573 55220838 55220573 ID=Msa1255880-mRNA-1:cds;Parent=Msa1255880-mRNA-1
chr8_2 CDS 55220349 55220442 55220349 ID=Msa1255880-mRNA-1:cds;Parent=Msa1255880-mRNA-1
chr8_2 CDS 55220127 55220238 55220127 ID=Msa1255880-mRNA-1:cds;Parent=Msa1255880-mRNA-1
chr8_2 CDS 55219284 55219446 55219284 ID=Msa1255880-mRNA-1:cds;Parent=Msa1255880-mRNA-1
chr8_2 three_prime_UTR 55218883 55219283 55218883 ID=Msa1255880-mRNA-1:three_prime_utr;Parent=Msa1255880-mRNA-1
Gene Sequence

>Msa1255880

ATGAGAAACATGGCAAGCTCACGAGGTAATATTGCAGCCATAGTTGGCGTCGGTCCTAATCTCGGCCTCTCCATCGCTCGCAAGTTTGCTCATGAAGGTTACACCGTTGCCATCCTCGCCCGTGACTTAGGGAGGTTATCAAGATTTGCAGATGAAATAGCAAGGGAAGAAAAGGCACAAGTGTTTGCTATAAGAATTGATTGTTCAGATTCAAGAAGTGTAAAAGAAGCATTTGAAGGTGTACTTTCACTTGGATTTGTTGAAGTTCTTGTTTATAATGCTAATTATGAGTCACCTCTTCAATCCAAACCAACTCCTTTTCAACATCTCTCAATCCAAACTTTCCAAACTTCCCTTGCCGTTTCATCCCTCGGCGCCTTCAACTGTGCTCAACAGGTGCTGCCGGGAATGGTTGAAAGAGGAAAAGGAACAATTCTATTCACTGGTTGCTCTGCTTCTTTAAATGGCATTGCAGGATACTCAGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCACAATGCATTGCTAGAGAATTTCAGCCTCAAGGAGTGCATGTAGCTCATATTATTATCGATGGTTTTATTGGCCCACCAAGAGGATCATCGGCAACAACAACAACGATGTCGTCGCGAGGAGGAGGAAGTGGTGGTGAGAGTGTTATGGACCCGGATGCATTGGCTCAAACATATTGGCATATACACGTTCAGGACCGGAATGCATGGACCCAAGAAATGGATGTTCGTTCATCGAACTTCTAG

Protein sequence

>Msa1255880

MRNMASSRGNIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVKEAFEGVLSLGFVEVLVYNANYESPLQSKPTPFQHLSIQTFQTSLAVSSLGAFNCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCIAREFQPQGVHVAHIIIDGFIGPPRGSSATTTTMSSRGGGSGGESVMDPDALAQTYWHIHVQDRNAWTQEMDVRSSNF*