AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006710.t1 MTR_4g080200 57.567 337 101 11 1 313 1 319 5.12e-119 347
MS.gene006710.t1 MTR_1g009110 43.836 365 162 14 2 335 13 365 1.12e-79 248
MS.gene006710.t1 MTR_1g023400 43.750 336 140 14 1 308 1 315 2.49e-73 231
MS.gene006710.t1 MTR_1g022200 42.090 335 145 15 1 306 13 327 1.69e-63 206
MS.gene006710.t1 MTR_1g037540 39.329 328 144 12 3 286 5 321 3.37e-53 180
MS.gene006710.t1 MTR_1g022105 35.629 334 134 16 2 308 20 299 1.90e-45 158
MS.gene006710.t1 MTR_8g093280 62.245 98 32 1 3 100 7 99 5.30e-32 116
MS.gene006710.t1 MTR_2g034700 24.176 364 219 12 3 341 14 345 7.70e-17 81.3
MS.gene006710.t1 MTR_1g024125 42.391 92 39 2 227 306 38 127 2.81e-16 75.5
MS.gene006710.t1 MTR_4g109280 25.203 246 171 6 6 249 11 245 5.43e-16 78.6
MS.gene006710.t1 MTR_4g117850 25.246 305 177 13 2 286 22 295 3.63e-15 76.3
MS.gene006710.t1 MTR_2g028140 24.922 321 177 12 10 288 12 310 5.45e-15 75.9
MS.gene006710.t1 MTR_6g065980 27.541 305 151 13 6 288 19 275 7.69e-15 75.1
MS.gene006710.t1 MTR_3g034130 26.894 264 163 9 5 249 11 263 1.66e-14 74.3
MS.gene006710.t1 MTR_7g017170 24.172 302 187 13 2 272 17 307 4.97e-14 72.8
MS.gene006710.t1 MTR_7g017130 24.503 302 186 13 2 272 17 307 5.02e-14 72.8
MS.gene006710.t1 MTR_3g103020 23.904 251 174 6 6 249 23 263 5.42e-14 72.8
MS.gene006710.t1 MTR_3g036430 23.776 286 169 9 6 288 23 262 1.25e-13 71.2
MS.gene006710.t1 MTR_2g021150 25.079 315 170 15 5 289 16 294 1.42e-13 71.2
MS.gene006710.t1 MTR_3g013740 25.573 262 162 10 6 244 47 298 1.51e-13 71.6
MS.gene006710.t1 MTR_7g070440 27.653 311 179 15 3 289 7 295 1.61e-13 71.2
MS.gene006710.t1 MTR_5g094350 25.267 281 155 12 3 246 13 275 2.05e-13 70.1
MS.gene006710.t1 MTR_7g069550 23.301 309 178 12 3 268 14 306 2.17e-13 70.9
MS.gene006710.t1 MTR_7g016930 25.694 288 174 13 3 271 16 282 3.10e-13 70.1
MS.gene006710.t1 MTR_5g074850 26.642 274 151 11 3 236 35 298 3.75e-13 70.9
MS.gene006710.t1 MTR_3g014540 26.421 299 178 14 6 288 32 304 4.13e-13 70.1
MS.gene006710.t1 MTR_2g426090 25.397 315 179 13 6 288 9 299 6.23e-13 69.7
MS.gene006710.t1 MTR_5g057710 25.490 306 170 13 6 288 49 319 7.58e-13 69.3
MS.gene006710.t1 MTR_5g057020 23.026 304 181 11 6 293 49 315 7.90e-13 68.9
MS.gene006710.t1 MTR_4g023090 25.200 250 160 8 5 243 18 251 1.00e-12 68.9
MS.gene006710.t1 MTR_4g117770 27.984 243 151 9 2 236 10 236 1.36e-12 68.6
MS.gene006710.t1 MTR_4g117810 27.984 243 151 9 2 236 10 236 1.36e-12 68.6
MS.gene006710.t1 MTR_3g034180 25.168 298 191 10 5 286 125 406 1.51e-12 68.6
MS.gene006710.t1 MTR_1g056710 24.752 303 162 11 6 279 37 302 1.73e-12 68.2
MS.gene006710.t1 MTR_1g053510 26.990 289 148 14 2 242 14 287 1.88e-12 68.2
MS.gene006710.t1 MTR_8g013010 26.908 249 145 11 1 231 52 281 2.07e-12 67.4
MS.gene006710.t1 MTR_4g023440 26.339 224 135 7 5 218 20 223 2.18e-12 67.4
MS.gene006710.t1 MTR_4g061340 23.460 341 231 9 6 327 29 358 2.18e-12 67.8
MS.gene006710.t1 MTR_4g023080 24.898 245 159 7 5 243 11 236 2.35e-12 67.8
MS.gene006710.t1 MTR_6g090010 63.043 46 16 1 2 47 54 98 2.43e-12 64.7
MS.gene006710.t1 MTR_3g014570 24.579 297 186 13 6 288 32 304 3.34e-12 67.4
MS.gene006710.t1 MTR_2g046920 26.378 254 153 11 3 242 24 257 4.73e-12 67.0
MS.gene006710.t1 MTR_8g467140 25.984 254 151 9 5 242 34 266 4.84e-12 66.6
MS.gene006710.t1 MTR_4g117550 24.028 283 154 11 2 243 16 278 4.84e-12 66.6
MS.gene006710.t1 MTR_7g017040 23.529 306 183 13 3 271 16 307 5.65e-12 66.6
MS.gene006710.t1 MTR_3g006500 24.183 306 173 11 6 288 20 289 5.72e-12 66.6
MS.gene006710.t1 MTR_3g010520 23.630 292 174 11 6 288 28 279 6.58e-12 66.2
MS.gene006710.t1 MTR_2g104340 26.296 270 160 12 2 242 13 272 7.69e-12 66.2
MS.gene006710.t1 MTR_7g013590 24.092 303 182 10 6 288 39 313 8.10e-12 66.2
MS.gene006710.t1 MTR_0115s0020 26.812 276 163 14 2 248 9 274 8.90e-12 66.2
MS.gene006710.t1 MTR_5g057790 26.744 258 147 11 6 243 49 284 1.06e-11 65.9
MS.gene006710.t1 MTR_5g092850 23.158 285 161 10 3 243 16 286 1.30e-11 65.5
MS.gene006710.t1 MTR_5g096910 25.484 310 180 13 5 281 19 310 1.55e-11 65.5
MS.gene006710.t1 MTR_5g027370 25.723 311 173 13 11 288 37 322 1.65e-11 65.5
MS.gene006710.t1 MTR_3g030350 25.095 263 141 10 6 244 38 268 1.72e-11 65.1
MS.gene006710.t1 MTR_5g027330 25.723 311 173 13 11 288 48 333 2.06e-11 65.1
MS.gene006710.t1 MTR_0620s0010 59.524 42 17 0 2 43 5 46 2.11e-11 59.3
MS.gene006710.t1 MTR_1g054725 22.977 309 180 13 6 288 23 299 2.57e-11 64.7
MS.gene006710.t1 MTR_2g055970 25.591 254 152 10 5 242 213 445 2.84e-11 65.1
MS.gene006710.t1 MTR_3g007330 26.000 250 148 11 10 243 55 283 3.03e-11 64.3
MS.gene006710.t1 MTR_5g097680 24.232 293 157 13 3 236 17 303 3.25e-11 64.3
MS.gene006710.t1 MTR_8g033110 24.013 304 167 12 3 255 14 304 4.53e-11 63.9
MS.gene006710.t1 MTR_3g007410 25.163 306 178 14 10 287 59 341 5.67e-11 63.5
MS.gene006710.t1 MTR_2g028130 24.104 307 199 11 6 288 8 304 6.50e-11 63.5
MS.gene006710.t1 MTR_4g117780 27.347 245 150 11 2 236 10 236 6.90e-11 63.2
MS.gene006710.t1 MTR_3g058480 25.000 256 160 8 6 243 42 283 7.70e-11 62.8
MS.gene006710.t1 MTR_5g057690 24.219 256 146 7 6 243 49 274 9.51e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006710.t1 AT3G16210 26.939 245 143 12 5 242 7 222 8.08e-15 75.1
MS.gene006710.t1 AT5G62660 26.144 306 177 14 6 288 44 323 4.35e-13 70.1
MS.gene006710.t1 AT1G11270 27.203 261 142 15 11 249 43 277 2.14e-12 67.4
MS.gene006710.t1 AT1G11270 27.203 261 142 15 11 249 43 277 2.14e-12 67.4
MS.gene006710.t1 AT2G43270 24.576 236 117 10 6 217 7 205 8.46e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAGTATTTATGGTATT+TGG 0.112627 4.1:+26109131 MS.gene006710:CDS
AGGACAATGTTCAGTATTTA+TGG 0.175441 4.1:+26109124 MS.gene006710:intron
TCAATTAATAATTCCTTCTA+TGG 0.178398 4.1:+26108368 MS.gene006710:CDS
GTATGGTTTGGTTGGAAATA+TGG 0.191217 4.1:+26108780 MS.gene006710:CDS
GGGGTTGCATCACGTAAATT+TGG 0.213603 4.1:-26108680 None:intergenic
GGGCTCTCTTGGTTATGTTT+TGG 0.243919 4.1:+26108742 MS.gene006710:CDS
TATGGGTTTGGTACTGTTAA+TGG 0.252297 4.1:+26108386 MS.gene006710:CDS
CTCGATTCTTGCTACGCCTT+TGG 0.258120 4.1:-26108210 None:intergenic
TCGATTCTTGCTACGCCTTT+GGG 0.306887 4.1:-26108209 None:intergenic
GGGTTGCATCACGTAAATTT+GGG 0.309278 4.1:-26108679 None:intergenic
AATGAATATAGGAGAAGATT+TGG 0.309660 4.1:+26107956 None:intergenic
GTGAGGGAGCACGGGGAATA+AGG 0.328030 4.1:-26108334 None:intergenic
AATAATTCCTTCTATGGGTT+TGG 0.329087 4.1:+26108374 MS.gene006710:CDS
TGATGATGTCATTGAGATAA+AGG 0.339225 4.1:+26108721 MS.gene006710:CDS
TTTGTCTCAATGGTATTTAC+CGG 0.354023 4.1:+26108256 MS.gene006710:CDS
CACGGAAATATCGGATAAAC+GGG 0.361146 4.1:-26108700 None:intergenic
GGGCTTCAAGTTGCTGAAAC+TGG 0.367861 4.1:-26108658 None:intergenic
ATAATCTAAGCACTAAATCT+TGG 0.371440 4.1:+26108489 MS.gene006710:CDS
TGACATCATCACGGAAATAT+CGG 0.394315 4.1:-26108709 None:intergenic
AACAAAGATTTGATGAGGAT+TGG 0.402919 4.1:-26108185 None:intergenic
AGATACAATACTCTTGTTAA+CGG 0.404647 4.1:+26108569 MS.gene006710:CDS
ACAAGAGTATTGTATCTTGA+AGG 0.416484 4.1:-26108563 None:intergenic
AACAGTACCAAACCCATAGA+AGG 0.426627 4.1:-26108381 None:intergenic
GGTGAACCTCATTAGTTGTT+GGG 0.430302 4.1:-26108313 None:intergenic
TCACGGAAATATCGGATAAA+CGG 0.431255 4.1:-26108701 None:intergenic
TCCTCAATAGTCCTCCTCCT+TGG 0.438477 4.1:+26108519 MS.gene006710:CDS
TCAAATGTGTTCAAAGATCA+TGG 0.438742 4.1:+26108024 MS.gene006710:CDS
TTGGTTGGAAATATGGCTTA+TGG 0.440734 4.1:+26108787 MS.gene006710:CDS
ATTGAGATAAAGGGCTCTCT+TGG 0.442989 4.1:+26108731 MS.gene006710:CDS
GTAGAGAAGACAATGAATAT+AGG 0.450251 4.1:+26107945 None:intergenic
ATTTATGGTATTTGGAATGA+TGG 0.464558 4.1:+26109139 MS.gene006710:CDS
AATCTCATCAATGGTTTCGC+TGG 0.475632 4.1:-26108002 None:intergenic
ACACATTTGAATCTCATCAA+TGG 0.483025 4.1:-26108011 None:intergenic
CAATTAATAATTCCTTCTAT+GGG 0.499085 4.1:+26108369 MS.gene006710:CDS
GTTCCATGCAATCAATTGAC+CGG 0.504739 4.1:-26108291 None:intergenic
GATGATGTCATTGAGATAAA+GGG 0.508855 4.1:+26108722 MS.gene006710:CDS
AGGTGAACCTCATTAGTTGT+TGG 0.516554 4.1:-26108314 None:intergenic
ATTCCCCGTGCTCCCTCACT+CGG 0.521887 4.1:+26108338 MS.gene006710:CDS
TATGGCTTATGGAACAAAAC+GGG 0.527549 4.1:+26108798 MS.gene006710:CDS
AATTGAATAGTTACCGAGTG+AGG 0.533733 4.1:-26108351 None:intergenic
ATATGGCTTATGGAACAAAA+CGG 0.534037 4.1:+26108797 MS.gene006710:CDS
GTTACCGAGTGAGGGAGCAC+GGG 0.535375 4.1:-26108342 None:intergenic
ATCCCGGTCAATTGATTGCA+TGG 0.536525 4.1:+26108288 MS.gene006710:CDS
ACATGTGAGAAGCTTCATGC+TGG 0.536800 4.1:-26108144 None:intergenic
AGTTACCGAGTGAGGGAGCA+CGG 0.536936 4.1:-26108343 None:intergenic
ATCAAATCTTTGTTTCCCAA+AGG 0.543090 4.1:+26108194 MS.gene006710:CDS
TTTGACAATAGAGCTATGCT+TGG 0.544827 4.1:-26109291 None:intergenic
AATGATGGTGCTGAAATACT+TGG 0.546742 4.1:+26109154 MS.gene006710:CDS
TTTCAATCATAAGAAGACTA+GGG 0.547871 4.1:-26108103 None:intergenic
ACTTCTTCTAGTCATAAAGC+AGG 0.549381 4.1:-26108066 None:intergenic
CTCACATCATACGATCATCA+AGG 0.558086 4.1:+26109192 MS.gene006710:CDS
TGGGAAACAAAGATTTGATG+AGG 0.564142 4.1:-26108190 None:intergenic
CGATTAGTGACAACAGTCCA+AGG 0.571388 4.1:-26108536 None:intergenic
ATTGAATAGTTACCGAGTGA+GGG 0.574008 4.1:-26108350 None:intergenic
TTGTCTCAATGGTATTTACC+GGG 0.575719 4.1:+26108257 MS.gene006710:CDS
TCCAAGGAGGAGGACTATTG+AGG 0.584135 4.1:-26108520 None:intergenic
TTCCATGCAATCAATTGACC+GGG 0.584696 4.1:-26108290 None:intergenic
GTAGCAAGAATCGAGACCTA+TGG 0.587110 4.1:+26108218 MS.gene006710:CDS
GGAGGAGGACTATTGAGGAT+AGG 0.594424 4.1:-26108515 None:intergenic
GGTTGCATCACGTAAATTTG+GGG 0.600619 4.1:-26108678 None:intergenic
GTGACAACAGTCCAAGGAGG+AGG 0.608990 4.1:-26108530 None:intergenic
GAGACCTATGGTAGTTGCAA+CGG 0.622777 4.1:+26108230 MS.gene006710:CDS
ATGGAACCCAACAACTAATG+AGG 0.623538 4.1:+26108307 MS.gene006710:CDS
CTTCTTCTAGTCATAAAGCA+GGG 0.626167 4.1:-26108065 None:intergenic
AACACCGTTGCAACTACCAT+AGG 0.626901 4.1:-26108234 None:intergenic
TTACCGGGCAAAACTCATCC+CGG 0.627001 4.1:+26108272 MS.gene006710:CDS
ATGAAGCTTCTCACATGTGA+CGG 0.628409 4.1:+26108149 MS.gene006710:CDS
GATGGTGCTGAAATACTTGG+AGG 0.632185 4.1:+26109157 MS.gene006710:CDS
TCACATCATACGATCATCAA+GGG 0.640879 4.1:+26109193 MS.gene006710:CDS
TGGAGATAGAGATCTTGTTG+CGG 0.650609 4.1:+26107976 MS.gene006710:CDS
CATGTGAGAAGCTTCATGCT+GGG 0.654748 4.1:-26108143 None:intergenic
TTACCGAGTGAGGGAGCACG+GGG 0.655254 4.1:-26108341 None:intergenic
TTATCTCAATGACATCATCA+CGG 0.687959 4.1:-26108718 None:intergenic
ATGGTGCTGAAATACTTGGA+GGG 0.691236 4.1:+26109158 MS.gene006710:CDS
TTAGTGACAACAGTCCAAGG+AGG 0.781399 4.1:-26108533 None:intergenic
ACGGAAATATCGGATAAACG+GGG 0.811679 4.1:-26108699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAATTAAAGTGTAT+TGG + chr4.1:26109011-26109030 MS.gene006710:intron 15.0%
!!! AAAAATGCTTTATCTTTTAT+CGG + chr4.1:26108457-26108476 MS.gene006710:CDS 15.0%
!!! ATTTCAAATTGATATTTTTG+AGG + chr4.1:26109230-26109249 MS.gene006710:CDS 15.0%
!!! CAAAAATATCAATTTGAAAT+TGG - chr4.1:26109230-26109249 None:intergenic 15.0%
!! CAATTAATAATTCCTTCTAT+GGG + chr4.1:26108369-26108388 MS.gene006710:CDS 20.0%
!! TCAATTAATAATTCCTTCTA+TGG + chr4.1:26108368-26108387 MS.gene006710:CDS 20.0%
!!! TTTAAGTTTGTCTTTTTCTT+GGG - chr4.1:26108933-26108952 None:intergenic 20.0%
! AGATACAATACTCTTGTTAA+CGG + chr4.1:26108569-26108588 MS.gene006710:CDS 25.0%
! ATAATCTAAGCACTAAATCT+TGG + chr4.1:26108489-26108508 MS.gene006710:CDS 25.0%
! GAGATAACATTGATACAAAT+AGG + chr4.1:26109104-26109123 MS.gene006710:intron 25.0%
! TATTTATTGAGGGTAAAGTT+GGG + chr4.1:26108988-26109007 MS.gene006710:intron 25.0%
! TGTTCAGTATTTATGGTATT+TGG + chr4.1:26109131-26109150 MS.gene006710:CDS 25.0%
! TTTCAATCATAAGAAGACTA+GGG - chr4.1:26108106-26108125 None:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + chr4.1:26108977-26108996 MS.gene006710:intron 25.0%
!! AAAATGAGGATGATTGTTTT+TGG + chr4.1:26109253-26109272 MS.gene006710:CDS 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + chr4.1:26108978-26108997 MS.gene006710:intron 25.0%
!! ATTTATGGTATTTGGAATGA+TGG + chr4.1:26109139-26109158 MS.gene006710:CDS 25.0%
!! TTTTCAATCATAAGAAGACT+AGG - chr4.1:26108107-26108126 None:intergenic 25.0%
!!! ATAGGTTTTTTAGTATGGTT+TGG + chr4.1:26108768-26108787 MS.gene006710:CDS 25.0%
!!! CTTTAAGTTTGTCTTTTTCT+TGG - chr4.1:26108934-26108953 None:intergenic 25.0%
!!! TGATATTTTTGAGGAAAATG+AGG + chr4.1:26109239-26109258 MS.gene006710:CDS 25.0%
AACAAAGATTTGATGAGGAT+TGG - chr4.1:26108188-26108207 None:intergenic 30.0%
AAGTGACGCTTATTATGAAA+CGG + chr4.1:26109078-26109097 MS.gene006710:intron 30.0%
AATAATTCCTTCTATGGGTT+TGG + chr4.1:26108374-26108393 MS.gene006710:CDS 30.0%
ACACATTTGAATCTCATCAA+TGG - chr4.1:26108014-26108033 None:intergenic 30.0%
AGGACAATGTTCAGTATTTA+TGG + chr4.1:26109124-26109143 MS.gene006710:intron 30.0%
ATATGGCTTATGGAACAAAA+CGG + chr4.1:26108797-26108816 MS.gene006710:CDS 30.0%
GATGATGTCATTGAGATAAA+GGG + chr4.1:26108722-26108741 MS.gene006710:CDS 30.0%
GTATTTATTGAGGGTAAAGT+TGG + chr4.1:26108987-26109006 MS.gene006710:intron 30.0%
TCAAATGTGTTCAAAGATCA+TGG + chr4.1:26108024-26108043 MS.gene006710:CDS 30.0%
TTATCTCAATGACATCATCA+CGG - chr4.1:26108721-26108740 None:intergenic 30.0%
TTTGTCTCAATGGTATTTAC+CGG + chr4.1:26108256-26108275 MS.gene006710:CDS 30.0%
! ATCAAATCTTTGTTTCCCAA+AGG + chr4.1:26108194-26108213 MS.gene006710:CDS 30.0%
! TGATGATGTCATTGAGATAA+AGG + chr4.1:26108721-26108740 MS.gene006710:CDS 30.0%
! TTGTTAACGGTGTTTTTCAT+TGG + chr4.1:26108582-26108601 MS.gene006710:CDS 30.0%
!! ACAAGAGTATTGTATCTTGA+AGG - chr4.1:26108566-26108585 None:intergenic 30.0%
!! ACGACACTCATTTTAAAAGA+TGG - chr4.1:26108840-26108859 None:intergenic 30.0%
!! TTCCTTAATTTGTGTGCAAT+TGG - chr4.1:26108868-26108887 None:intergenic 30.0%
!!! GGAGTATAGGTTTTTTAGTA+TGG + chr4.1:26108763-26108782 MS.gene006710:CDS 30.0%
!!! GTTTTTTAGTATGGTTTGGT+TGG + chr4.1:26108772-26108791 MS.gene006710:CDS 30.0%
!!! TTGGTTATGTTTTGGAGTAT+AGG + chr4.1:26108750-26108769 MS.gene006710:CDS 30.0%
AAATTGTGCGAGAGAAAAGT+TGG + chr4.1:26108963-26108982 MS.gene006710:intron 35.0%
AATTGAATAGTTACCGAGTG+AGG - chr4.1:26108354-26108373 None:intergenic 35.0%
ACTTCTTCTAGTCATAAAGC+AGG - chr4.1:26108069-26108088 None:intergenic 35.0%
AGCCAATTGCACACAAATTA+AGG + chr4.1:26108863-26108882 MS.gene006710:intron 35.0%
ATTGAATAGTTACCGAGTGA+GGG - chr4.1:26108353-26108372 None:intergenic 35.0%
CTTCTTCTAGTCATAAAGCA+GGG - chr4.1:26108068-26108087 None:intergenic 35.0%
TATGGCTTATGGAACAAAAC+GGG + chr4.1:26108798-26108817 MS.gene006710:CDS 35.0%
TCACATCATACGATCATCAA+GGG + chr4.1:26109193-26109212 MS.gene006710:CDS 35.0%
TCACGGAAATATCGGATAAA+CGG - chr4.1:26108704-26108723 None:intergenic 35.0%
TGACATCATCACGGAAATAT+CGG - chr4.1:26108712-26108731 None:intergenic 35.0%
TGGGAAACAAAGATTTGATG+AGG - chr4.1:26108193-26108212 None:intergenic 35.0%
TTGGTTGGAAATATGGCTTA+TGG + chr4.1:26108787-26108806 MS.gene006710:CDS 35.0%
TTGTCTCAATGGTATTTACC+GGG + chr4.1:26108257-26108276 MS.gene006710:CDS 35.0%
! AATGATGGTGCTGAAATACT+TGG + chr4.1:26109154-26109173 MS.gene006710:CDS 35.0%
! TATGGGTTTGGTACTGTTAA+TGG + chr4.1:26108386-26108405 MS.gene006710:CDS 35.0%
!! GTATGGTTTGGTTGGAAATA+TGG + chr4.1:26108780-26108799 MS.gene006710:CDS 35.0%
AACAGTACCAAACCCATAGA+AGG - chr4.1:26108384-26108403 None:intergenic 40.0%
AATCTCATCAATGGTTTCGC+TGG - chr4.1:26108005-26108024 None:intergenic 40.0%
ACGGAAATATCGGATAAACG+GGG - chr4.1:26108702-26108721 None:intergenic 40.0%
AGGTGAACCTCATTAGTTGT+TGG - chr4.1:26108317-26108336 None:intergenic 40.0%
ATGAAGCTTCTCACATGTGA+CGG + chr4.1:26108149-26108168 MS.gene006710:CDS 40.0%
ATGGAACCCAACAACTAATG+AGG + chr4.1:26108307-26108326 MS.gene006710:CDS 40.0%
ATTGAGATAAAGGGCTCTCT+TGG + chr4.1:26108731-26108750 MS.gene006710:CDS 40.0%
CACGGAAATATCGGATAAAC+GGG - chr4.1:26108703-26108722 None:intergenic 40.0%
CTCACATCATACGATCATCA+AGG + chr4.1:26109192-26109211 MS.gene006710:CDS 40.0%
GACGCTTATTATGAAACGGA+GGG + chr4.1:26109082-26109101 MS.gene006710:intron 40.0%
GGGTTGCATCACGTAAATTT+GGG - chr4.1:26108682-26108701 None:intergenic 40.0%
GGTGAACCTCATTAGTTGTT+GGG - chr4.1:26108316-26108335 None:intergenic 40.0%
GGTTGCATCACGTAAATTTG+GGG - chr4.1:26108681-26108700 None:intergenic 40.0%
GTTCCATGCAATCAATTGAC+CGG - chr4.1:26108294-26108313 None:intergenic 40.0%
TGACGCTTATTATGAAACGG+AGG + chr4.1:26109081-26109100 MS.gene006710:intron 40.0%
TGGAGATAGAGATCTTGTTG+CGG + chr4.1:26107976-26107995 MS.gene006710:CDS 40.0%
TTCCATGCAATCAATTGACC+GGG - chr4.1:26108293-26108312 None:intergenic 40.0%
! ATGGTGCTGAAATACTTGGA+GGG + chr4.1:26109158-26109177 MS.gene006710:CDS 40.0%
! TGCTGGGTGTTTTCAATTTG+CGG - chr4.1:26108130-26108149 None:intergenic 40.0%
AACACCGTTGCAACTACCAT+AGG - chr4.1:26108237-26108256 None:intergenic 45.0%
ACATGTGAGAAGCTTCATGC+TGG - chr4.1:26108147-26108166 None:intergenic 45.0%
ATCCCGGTCAATTGATTGCA+TGG + chr4.1:26108288-26108307 MS.gene006710:CDS 45.0%
CATGTGAGAAGCTTCATGCT+GGG - chr4.1:26108146-26108165 None:intergenic 45.0%
CGATTAGTGACAACAGTCCA+AGG - chr4.1:26108539-26108558 None:intergenic 45.0%
GAGACCTATGGTAGTTGCAA+CGG + chr4.1:26108230-26108249 MS.gene006710:CDS 45.0%
GCTTATGGAACAAAACGGGT+GGG + chr4.1:26108802-26108821 MS.gene006710:intron 45.0%
GGGGTTGCATCACGTAAATT+TGG - chr4.1:26108683-26108702 None:intergenic 45.0%
GTAGCAAGAATCGAGACCTA+TGG + chr4.1:26108218-26108237 MS.gene006710:CDS 45.0%
TCGATTCTTGCTACGCCTTT+GGG - chr4.1:26108212-26108231 None:intergenic 45.0%
TTAGTGACAACAGTCCAAGG+AGG - chr4.1:26108536-26108555 None:intergenic 45.0%
! GATGGTGCTGAAATACTTGG+AGG + chr4.1:26109157-26109176 MS.gene006710:CDS 45.0%
! GCAACGGTGTTTTGTCTCAA+TGG + chr4.1:26108246-26108265 MS.gene006710:CDS 45.0%
! GGGCTCTCTTGGTTATGTTT+TGG + chr4.1:26108742-26108761 MS.gene006710:CDS 45.0%
CTCGATTCTTGCTACGCCTT+TGG - chr4.1:26108213-26108232 None:intergenic 50.0%
GGAGGAGGACTATTGAGGAT+AGG - chr4.1:26108518-26108537 None:intergenic 50.0%
GGCTTATGGAACAAAACGGG+TGG + chr4.1:26108801-26108820 MS.gene006710:intron 50.0%
TCCAAGGAGGAGGACTATTG+AGG - chr4.1:26108523-26108542 None:intergenic 50.0%
TCCTCAATAGTCCTCCTCCT+TGG + chr4.1:26108519-26108538 MS.gene006710:CDS 50.0%
TTACCGGGCAAAACTCATCC+CGG + chr4.1:26108272-26108291 MS.gene006710:CDS 50.0%
!! GGGCTTCAAGTTGCTGAAAC+TGG - chr4.1:26108661-26108680 None:intergenic 50.0%
AGTTACCGAGTGAGGGAGCA+CGG - chr4.1:26108346-26108365 None:intergenic 55.0%
GTGACAACAGTCCAAGGAGG+AGG - chr4.1:26108533-26108552 None:intergenic 55.0%
! TGACCGGGATGAGTTTTGCC+CGG - chr4.1:26108278-26108297 None:intergenic 55.0%
ATTCCCCGTGCTCCCTCACT+CGG + chr4.1:26108338-26108357 MS.gene006710:CDS 60.0%
! GTGAGGGAGCACGGGGAATA+AGG - chr4.1:26108337-26108356 None:intergenic 60.0%
! GTTACCGAGTGAGGGAGCAC+GGG - chr4.1:26108345-26108364 None:intergenic 60.0%
! TTACCGAGTGAGGGAGCACG+GGG - chr4.1:26108344-26108363 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26107957 26109300 26107957 ID=MS.gene006710
chr4.1 mRNA 26107957 26109300 26107957 ID=MS.gene006710.t1;Parent=MS.gene006710
chr4.1 exon 26107957 26108819 26107957 ID=MS.gene006710.t1.exon1;Parent=MS.gene006710.t1
chr4.1 CDS 26107957 26108819 26107957 ID=cds.MS.gene006710.t1;Parent=MS.gene006710.t1
chr4.1 exon 26109126 26109300 26109126 ID=MS.gene006710.t1.exon2;Parent=MS.gene006710.t1
chr4.1 CDS 26109126 26109300 26109126 ID=cds.MS.gene006710.t1;Parent=MS.gene006710.t1
Gene Sequence

>MS.gene006710

ATGAATATAGGAGAAGATTTGGAGATAGAGATCTTGTTGCGGCTACCAGCGAAACCATTGATGAGATTCAAATGTGTTCAAAGATCATGGAACAATCTCATCAAAAGTCCCTGCTTTATGACTAGAAGAAGTAAGTTACACAGAAACCCTAGTCTTCTTATGATTGAAAACCGCAAATTGAAAACACCCAGCATGAAGCTTCTCACATGTGACGGTGACAACGAGAAACCAATCCTCATCAAATCTTTGTTTCCCAAAGGCGTAGCAAGAATCGAGACCTATGGTAGTTGCAACGGTGTTTTGTCTCAATGGTATTTACCGGGCAAAACTCATCCCGGTCAATTGATTGCATGGAACCCAACAACTAATGAGGTTCACCTTATTCCCCGTGCTCCCTCACTCGGTAACTATTCAATTAATAATTCCTTCTATGGGTTTGGTACTGTTAATGGCGACTTCAAAGTTGTCAAATTCAATCTCTCTAATTACAATGAAACTACAAAAATGCTTTATCTTTTATCGGCAGAAGTTTATAATCTAAGCACTAAATCTTGGACACCTATCCTCAATAGTCCTCCTCCTTGGACTGTTGTCACTAATCGACAACCTTCAAGATACAATACTCTTGTTAACGGTGTTTTTCATTGGATTACGAGCTCTTACTTCACTTCAAAAATTATTTGCTTTGACTTTCACAATAACCAGTTTCAGCAACTTGAAGCCCCAAATTTACGTGATGCAACCCCGTTTATCCGATATTTCCGTGATGATGTCATTGAGATAAAGGGCTCTCTTGGTTATGTTTTGGAGTATAGGTTTTTTAGTATGGTTTGGTTGGAAATATGGCTTATGGAACAAAACGGGTGGGTTAAACAGTACTCCATCTTTTAAAATGAGTGTCGTTTTAGCCAATTGCACACAAATTAAGGAATGATATGAAATAATCATTAGACATAACACTTTTACTAAACTGCCCAAGAAAAAGACAAACTTAAAGTTGCATTGAAAATTGTGCGAGAGAAAAGTTGGAGTATTTATTGAGGGTAAAGTTGGGAGAAAAAAATTAAAGTGTATTGGAAATGTAAAGTGACATTCATTTTGAAACAAATTTTTTTTTGCTAAAGTGACGCTTATTATGAAACGGAGGGAGATAACATTGATACAAATAGGACAATGTTCAGTATTTATGGTATTTGGAATGATGGTGCTGAAATACTTGGAGGGAGCATCAGCAGCTCACATCATACGATCATCAAGGGAACGCACTTCGCCAATTTCAAATTGATATTTTTGAGGAAAATGAGGATGATTGTTTTTGGTTTTACGAGTATGTGCCAAGCATAG
Protein sequence

>MS.gene006710.t1

MNIGEDLEIEILLRLPAKPLMRFKCVQRSWNNLIKSPCFMTRRSKLHRNPSLLMIENRKLKTPSMKLLTCDGDNEKPILIKSLFPKGVARIETYGSCNGVLSQWYLPGKTHPGQLIAWNPTTNEVHLIPRAPSLGNYSINNSFYGFGTVNGDFKVVKFNLSNYNETTKMLYLLSAEVYNLSTKSWTPILNSPPPWTVVTNRQPSRYNTLVNGVFHWITSSYFTSKIICFDFHNNQFQQLEAPNLRDATPFIRYFRDDVIEIKGSLGYVLEYRFFSMVWLEIWLMEQNGTMFSIYGIWNDGAEILGGSISSSHHTIIKGTHFANFKLIFLRKMRMIVFGFTSMCQA