Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035262.t1 | AES91738.2 | 88.7 | 151 | 17 | 0 | 21 | 171 | 207 | 357 | 1.30E-74 | 289.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035262.t1 | G7JHV9 | 88.7 | 151 | 17 | 0 | 21 | 171 | 207 | 357 | 9.7e-75 | 289.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035262.t1 | MTR_4g118380 | 87.582 | 153 | 19 | 0 | 19 | 171 | 205 | 357 | 3.53e-96 | 283 |
MS.gene035262.t1 | MTR_4g118400 | 73.563 | 174 | 25 | 1 | 19 | 192 | 142 | 294 | 6.38e-85 | 253 |
MS.gene035262.t1 | MTR_6g060650 | 72.832 | 173 | 38 | 1 | 20 | 192 | 204 | 367 | 4.27e-84 | 253 |
MS.gene035262.t1 | MTR_4g117720 | 66.667 | 180 | 45 | 3 | 19 | 192 | 201 | 371 | 2.80e-73 | 226 |
MS.gene035262.t1 | MTR_3g103020 | 64.596 | 161 | 46 | 2 | 34 | 192 | 221 | 372 | 4.08e-65 | 205 |
MS.gene035262.t1 | MTR_4g109280 | 66.460 | 161 | 42 | 4 | 33 | 191 | 202 | 352 | 8.23e-65 | 203 |
MS.gene035262.t1 | MTR_3g034180 | 62.346 | 162 | 51 | 2 | 31 | 192 | 332 | 483 | 1.07e-61 | 199 |
MS.gene035262.t1 | MTR_4g117850 | 63.030 | 165 | 46 | 4 | 33 | 191 | 218 | 373 | 2.64e-60 | 192 |
MS.gene035262.t1 | MTR_4g109270 | 61.491 | 161 | 51 | 2 | 34 | 192 | 207 | 358 | 1.34e-59 | 190 |
MS.gene035262.t1 | MTR_3g034130 | 60.390 | 154 | 52 | 1 | 31 | 184 | 218 | 362 | 3.08e-58 | 187 |
MS.gene035262.t1 | MTR_4g116320 | 61.446 | 166 | 49 | 5 | 31 | 192 | 98 | 252 | 2.29e-57 | 181 |
MS.gene035262.t1 | MTR_4g122850 | 61.728 | 162 | 49 | 5 | 34 | 192 | 207 | 358 | 6.54e-56 | 181 |
MS.gene035262.t1 | MTR_3g034160 | 61.728 | 162 | 52 | 2 | 31 | 192 | 218 | 369 | 1.50e-55 | 180 |
MS.gene035262.t1 | MTR_8g040935 | 58.182 | 165 | 54 | 4 | 34 | 192 | 47 | 202 | 1.87e-54 | 172 |
MS.gene035262.t1 | MTR_1g055195 | 56.970 | 165 | 62 | 3 | 28 | 192 | 317 | 472 | 3.26e-54 | 179 |
MS.gene035262.t1 | MTR_1g055175 | 56.548 | 168 | 59 | 5 | 28 | 192 | 39 | 195 | 4.22e-53 | 168 |
MS.gene035262.t1 | MTR_1g055165 | 52.660 | 188 | 75 | 5 | 8 | 192 | 136 | 312 | 5.67e-53 | 172 |
MS.gene035262.t1 | MTR_5g097210 | 57.803 | 173 | 59 | 4 | 22 | 193 | 199 | 358 | 8.89e-53 | 173 |
MS.gene035262.t1 | MTR_1g055135 | 55.814 | 172 | 67 | 4 | 23 | 192 | 205 | 369 | 1.62e-52 | 172 |
MS.gene035262.t1 | MTR_4g116330 | 54.819 | 166 | 62 | 3 | 31 | 192 | 218 | 374 | 3.99e-52 | 171 |
MS.gene035262.t1 | MTR_4g094365 | 55.152 | 165 | 62 | 4 | 31 | 192 | 203 | 358 | 8.26e-52 | 170 |
MS.gene035262.t1 | MTR_4g023130 | 58.125 | 160 | 53 | 4 | 34 | 191 | 159 | 306 | 3.11e-50 | 165 |
MS.gene035262.t1 | MTR_4g023090 | 52.299 | 174 | 58 | 4 | 34 | 192 | 215 | 378 | 2.26e-49 | 164 |
MS.gene035262.t1 | MTR_4g023080 | 56.250 | 160 | 56 | 4 | 34 | 191 | 200 | 347 | 3.60e-49 | 163 |
MS.gene035262.t1 | MTR_4g117780 | 52.000 | 175 | 75 | 3 | 21 | 192 | 193 | 361 | 2.15e-48 | 161 |
MS.gene035262.t1 | MTR_4g117770 | 54.268 | 164 | 67 | 2 | 31 | 192 | 204 | 361 | 2.76e-48 | 161 |
MS.gene035262.t1 | MTR_4g117810 | 54.268 | 164 | 67 | 2 | 31 | 192 | 204 | 361 | 2.76e-48 | 161 |
MS.gene035262.t1 | MTR_4g023380 | 48.901 | 182 | 60 | 3 | 34 | 192 | 200 | 371 | 2.86e-47 | 159 |
MS.gene035262.t1 | MTR_4g117750 | 54.819 | 166 | 71 | 2 | 28 | 193 | 193 | 354 | 3.35e-47 | 161 |
MS.gene035262.t1 | MTR_4g117750 | 58.140 | 129 | 51 | 2 | 66 | 192 | 350 | 477 | 1.25e-38 | 138 |
MS.gene035262.t1 | MTR_5g070080 | 56.287 | 167 | 61 | 4 | 28 | 192 | 223 | 379 | 3.66e-47 | 159 |
MS.gene035262.t1 | MTR_8g433030 | 57.059 | 170 | 53 | 8 | 29 | 192 | 181 | 336 | 1.05e-46 | 156 |
MS.gene035262.t1 | MTR_8g032390 | 57.059 | 170 | 53 | 8 | 29 | 192 | 214 | 369 | 2.53e-46 | 156 |
MS.gene035262.t1 | MTR_4g118370 | 50.000 | 166 | 55 | 3 | 28 | 193 | 118 | 255 | 8.91e-46 | 152 |
MS.gene035262.t1 | MTR_5g070130 | 51.852 | 162 | 66 | 3 | 34 | 192 | 218 | 370 | 1.12e-44 | 152 |
MS.gene035262.t1 | MTR_4g023190 | 55.488 | 164 | 58 | 7 | 34 | 192 | 200 | 353 | 1.31e-44 | 151 |
MS.gene035262.t1 | MTR_4g118360 | 67.568 | 111 | 32 | 2 | 84 | 192 | 12 | 120 | 4.17e-44 | 143 |
MS.gene035262.t1 | MTR_1g055250 | 52.500 | 160 | 59 | 6 | 28 | 185 | 109 | 253 | 4.19e-44 | 149 |
MS.gene035262.t1 | MTR_4g021785 | 51.250 | 160 | 64 | 3 | 34 | 191 | 201 | 348 | 4.29e-44 | 150 |
MS.gene035262.t1 | MTR_4g023150 | 54.878 | 164 | 59 | 7 | 34 | 192 | 201 | 354 | 1.06e-43 | 149 |
MS.gene035262.t1 | MTR_4g023070 | 49.419 | 172 | 63 | 4 | 34 | 191 | 202 | 363 | 5.51e-43 | 147 |
MS.gene035262.t1 | MTR_5g070088 | 51.515 | 165 | 68 | 3 | 31 | 192 | 224 | 379 | 1.18e-42 | 147 |
MS.gene035262.t1 | MTR_4g117870 | 62.602 | 123 | 44 | 2 | 71 | 192 | 140 | 261 | 2.79e-42 | 143 |
MS.gene035262.t1 | MTR_4g023200 | 53.049 | 164 | 62 | 7 | 34 | 192 | 201 | 354 | 5.28e-42 | 144 |
MS.gene035262.t1 | MTR_4g023120 | 49.133 | 173 | 62 | 5 | 34 | 191 | 202 | 363 | 5.71e-42 | 145 |
MS.gene035262.t1 | MTR_8g102520 | 45.455 | 165 | 76 | 4 | 31 | 192 | 163 | 316 | 1.79e-39 | 137 |
MS.gene035262.t1 | MTR_6g463430 | 51.235 | 162 | 62 | 5 | 34 | 192 | 49 | 196 | 2.97e-39 | 133 |
MS.gene035262.t1 | MTR_8g433040 | 58.042 | 143 | 46 | 4 | 52 | 192 | 228 | 358 | 3.03e-38 | 135 |
MS.gene035262.t1 | MTR_8g032380 | 58.042 | 143 | 46 | 4 | 52 | 192 | 228 | 358 | 3.03e-38 | 135 |
MS.gene035262.t1 | MTR_7g079400 | 44.512 | 164 | 77 | 3 | 34 | 192 | 177 | 331 | 6.59e-37 | 131 |
MS.gene035262.t1 | MTR_4g117530 | 44.654 | 159 | 48 | 2 | 34 | 192 | 129 | 247 | 2.13e-35 | 125 |
MS.gene035262.t1 | MTR_7g079370 | 46.875 | 160 | 74 | 3 | 34 | 192 | 201 | 350 | 4.17e-34 | 124 |
MS.gene035262.t1 | MTR_5g023000 | 66.292 | 89 | 30 | 0 | 104 | 192 | 5 | 93 | 1.10e-33 | 115 |
MS.gene035262.t1 | MTR_8g098830 | 37.379 | 206 | 82 | 4 | 1 | 169 | 1 | 196 | 2.87e-33 | 119 |
MS.gene035262.t1 | MTR_4g023440 | 44.654 | 159 | 42 | 3 | 34 | 192 | 214 | 326 | 2.10e-32 | 119 |
MS.gene035262.t1 | MTR_7g079450 | 47.917 | 144 | 61 | 4 | 50 | 192 | 1 | 131 | 1.23e-31 | 112 |
MS.gene035262.t1 | MTR_7g079420 | 43.030 | 165 | 75 | 7 | 34 | 192 | 987 | 1138 | 2.68e-31 | 119 |
MS.gene035262.t1 | MTR_4g122860 | 35.659 | 258 | 97 | 8 | 1 | 192 | 60 | 314 | 5.00e-31 | 115 |
MS.gene035262.t1 | MTR_4g116330 | 56.075 | 107 | 43 | 2 | 90 | 192 | 229 | 335 | 3.19e-29 | 110 |
MS.gene035262.t1 | MTR_2g048580 | 40.964 | 166 | 74 | 7 | 31 | 192 | 191 | 336 | 4.81e-26 | 102 |
MS.gene035262.t1 | MTR_7g117720 | 55.446 | 101 | 40 | 3 | 98 | 193 | 172 | 272 | 8.21e-24 | 95.5 |
MS.gene035262.t1 | MTR_4g114700 | 51.546 | 97 | 40 | 2 | 100 | 189 | 122 | 218 | 8.88e-24 | 94.4 |
MS.gene035262.t1 | MTR_4g023430 | 33.831 | 201 | 104 | 6 | 2 | 192 | 35 | 216 | 3.62e-22 | 89.7 |
MS.gene035262.t1 | MTR_4g121580 | 38.854 | 157 | 55 | 6 | 34 | 188 | 222 | 339 | 1.42e-19 | 85.5 |
MS.gene035262.t1 | MTR_8g013005 | 64.151 | 53 | 19 | 0 | 140 | 192 | 1 | 53 | 7.51e-17 | 71.6 |
MS.gene035262.t1 | MTR_4g109290 | 33.333 | 192 | 105 | 6 | 6 | 191 | 7 | 181 | 1.01e-15 | 72.0 |
MS.gene035262.t1 | MTR_8g013010 | 55.072 | 69 | 18 | 2 | 31 | 99 | 254 | 309 | 9.31e-14 | 68.6 |
MS.gene035262.t1 | MTR_4g117430 | 53.846 | 65 | 21 | 2 | 34 | 98 | 96 | 151 | 8.96e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 39 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGGCAACCTCAACAGAATT+AGG | 0.191223 | 8.1:-9319764 | None:intergenic |
GATTGTGATTTGTGGGTATT+TGG | 0.250931 | 8.1:+9320533 | MS.gene035262:CDS |
ATGGTAGGGTCACTCTTTAA+TGG | 0.291271 | 8.1:+9320362 | MS.gene035262:intron |
CCTAATTCTGTTGAGGTTGC+CGG | 0.295115 | 8.1:+9319764 | MS.gene035262:CDS |
AAGATGATGTAGTTGAAATA+TGG | 0.308827 | 8.1:+9320582 | MS.gene035262:CDS |
TGGTAGGGTCACTCTTTAAT+GGG | 0.318907 | 8.1:+9320363 | MS.gene035262:intron |
TTGGTGAGTTTCTCAGTGTA+TGG | 0.351491 | 8.1:+9320552 | MS.gene035262:CDS |
TCTTTAATGGGGCTATTCAC+TGG | 0.387565 | 8.1:+9320375 | MS.gene035262:CDS |
TGTGCAATTCTCTTTATAGT+AGG | 0.427774 | 8.1:-9320786 | None:intergenic |
CGGCAACCTCAACAGAATTA+GGG | 0.445516 | 8.1:-9319763 | None:intergenic |
TAATGGGGCTATTCACTGGT+TGG | 0.454880 | 8.1:+9320379 | MS.gene035262:CDS |
ATTGGAACTGATGGTGAAGT+TGG | 0.456865 | 8.1:+9320719 | MS.gene035262:CDS |
TGCTTACCCTAATTCTGTTG+AGG | 0.477268 | 8.1:+9319757 | MS.gene035262:CDS |
TTTCCTTTCAATTAAATCAA+AGG | 0.478785 | 8.1:-9320438 | None:intergenic |
TTGCCTTTGATTTAATTGAA+AGG | 0.515684 | 8.1:+9320435 | MS.gene035262:CDS |
AGCAAGTCATGAGGCAGATA+CGG | 0.522225 | 8.1:-9319738 | None:intergenic |
AACCTACAGATTGTGATTTG+TGG | 0.524422 | 8.1:+9320525 | MS.gene035262:CDS |
TTGGTGAAGTACGATGAAAA+AGG | 0.527194 | 8.1:+9320743 | MS.gene035262:CDS |
GCAATTCTCTTTATAGTAGG+AGG | 0.528562 | 8.1:-9320783 | None:intergenic |
TAACCTTGTTCGCTATCACC+GGG | 0.528671 | 8.1:-9320849 | None:intergenic |
ACCTACAGATTGTGATTTGT+GGG | 0.529972 | 8.1:+9320526 | MS.gene035262:CDS |
AGATGATGTAGTTGAAATAT+GGG | 0.540044 | 8.1:+9320583 | MS.gene035262:CDS |
AACTGATGGTGAAGTTGGAT+TGG | 0.547756 | 8.1:+9320724 | MS.gene035262:CDS |
AGTCTTTGCTTTCACTCCCC+CGG | 0.553500 | 8.1:+9320831 | MS.gene035262:CDS |
AACCTTGTTCGCTATCACCG+GGG | 0.569785 | 8.1:-9320848 | None:intergenic |
GGTGATATTATTGGAACTGA+TGG | 0.578976 | 8.1:+9320710 | MS.gene035262:CDS |
AGTACAAAGTGCATTCGTCA+TGG | 0.583815 | 8.1:+9320615 | MS.gene035262:CDS |
CTCTGTATACATAGCCACTC+GGG | 0.594887 | 8.1:-9320810 | None:intergenic |
GGTTCATGTTCAAGATCACC+TGG | 0.603390 | 8.1:-9320506 | None:intergenic |
ATTGGAGAGAAGTAATGAGT+GGG | 0.619618 | 8.1:-9320671 | None:intergenic |
ACCTTGTTCGCTATCACCGG+GGG | 0.621298 | 8.1:-9320847 | None:intergenic |
TATTGGAGAGAAGTAATGAG+TGG | 0.628700 | 8.1:-9320672 | None:intergenic |
ACTCTGTATACATAGCCACT+CGG | 0.643817 | 8.1:-9320811 | None:intergenic |
AAACGTAAAAGAGACATCAC+CGG | 0.646155 | 8.1:-9319783 | None:intergenic |
ACCCACAAATCACAATCTGT+AGG | 0.659019 | 8.1:-9320527 | None:intergenic |
GGTAGGGTCACTCTTTAATG+GGG | 0.671605 | 8.1:+9320364 | MS.gene035262:intron |
AAGTCATGAGGCAGATACGG+TGG | 0.683856 | 8.1:-9319735 | None:intergenic |
ATTAGGGTAAGCAAGTCATG+AGG | 0.684869 | 8.1:-9319747 | None:intergenic |
AGAGAATTGCACATCCCGAG+TGG | 0.707706 | 8.1:+9320796 | MS.gene035262:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATTGAAAGAAATTAA+GGG | + | chr8.1:9320302-9320321 | MS.gene035262:intron | 15.0% |
!! | TAATGTATTGAAAGAAATTA+AGG | + | chr8.1:9320301-9320320 | MS.gene035262:intron | 15.0% |
!! | AAAATAATAAAATCCACGAT+GGG | - | chr8.1:9320024-9320043 | None:intergenic | 20.0% |
!! | TAAAATAATAAAATCCACGA+TGG | - | chr8.1:9320025-9320044 | None:intergenic | 20.0% |
!! | TTTCCTTTCAATTAAATCAA+AGG | - | chr8.1:9320441-9320460 | None:intergenic | 20.0% |
!! | TTTGATATGAACAAAATTCT+AGG | - | chr8.1:9319894-9319913 | None:intergenic | 20.0% |
!!! | TGAAGTAGAAGTATAATAAT+CGG | - | chr8.1:9319961-9319980 | None:intergenic | 20.0% |
! | AAACTAAATGTTCATGTAGA+GGG | + | chr8.1:9320048-9320067 | MS.gene035262:intron | 25.0% |
! | AAATAATAAAATCCACGATG+GGG | - | chr8.1:9320023-9320042 | None:intergenic | 25.0% |
! | AAGATGATGTAGTTGAAATA+TGG | + | chr8.1:9320582-9320601 | MS.gene035262:CDS | 25.0% |
! | AAGATGTGAATTTGCAAAAT+GGG | - | chr8.1:9319850-9319869 | None:intergenic | 25.0% |
! | AATCAGAGAAGTTCATATAA+GGG | - | chr8.1:9320337-9320356 | None:intergenic | 25.0% |
! | ACAAAAAGTGGTGATATTAT+TGG | + | chr8.1:9320701-9320720 | MS.gene035262:CDS | 25.0% |
! | AGATGATGTAGTTGAAATAT+GGG | + | chr8.1:9320583-9320602 | MS.gene035262:CDS | 25.0% |
! | CATATAGATGAATGAAATGA+TGG | - | chr8.1:9320175-9320194 | None:intergenic | 25.0% |
! | CATCATTTCATTCATCTATA+TGG | + | chr8.1:9320173-9320192 | MS.gene035262:intron | 25.0% |
! | CCAAATGTGATGAAAAATTA+TGG | - | chr8.1:9320262-9320281 | None:intergenic | 25.0% |
! | TAATCAGAGAAGTTCATATA+AGG | - | chr8.1:9320338-9320357 | None:intergenic | 25.0% |
!! | CCATAATTTTTCATCACATT+TGG | + | chr8.1:9320259-9320278 | MS.gene035262:intron | 25.0% |
!! | TCATTCATCTATATGGTTTT+GGG | + | chr8.1:9320180-9320199 | MS.gene035262:intron | 25.0% |
!! | TTCATTCATCTATATGGTTT+TGG | + | chr8.1:9320179-9320198 | MS.gene035262:intron | 25.0% |
!! | TTGCCTTTGATTTAATTGAA+AGG | + | chr8.1:9320435-9320454 | MS.gene035262:CDS | 25.0% |
CAAACTAAATGTTCATGTAG+AGG | + | chr8.1:9320047-9320066 | MS.gene035262:intron | 30.0% | |
CAAGATGTGAATTTGCAAAA+TGG | - | chr8.1:9319851-9319870 | None:intergenic | 30.0% | |
CCAATATGTTGTACAAAAAG+TGG | + | chr8.1:9320689-9320708 | MS.gene035262:CDS | 30.0% | |
TATTTGTTTGTGAACTCTAG+TGG | - | chr8.1:9320120-9320139 | None:intergenic | 30.0% | |
TCAAGTGTGTTTGTAAGTTA+TGG | + | chr8.1:9319805-9319824 | MS.gene035262:intron | 30.0% | |
TGTGCAATTCTCTTTATAGT+AGG | - | chr8.1:9320789-9320808 | None:intergenic | 30.0% | |
!!! | CCACTTTTTGTACAACATAT+TGG | - | chr8.1:9320692-9320711 | None:intergenic | 30.0% |
AAACGTAAAAGAGACATCAC+CGG | - | chr8.1:9319786-9319805 | None:intergenic | 35.0% | |
AACCTACAGATTGTGATTTG+TGG | + | chr8.1:9320525-9320544 | MS.gene035262:CDS | 35.0% | |
ACACGTAAATTGGAACCATA+AGG | - | chr8.1:9320152-9320171 | None:intergenic | 35.0% | |
ATCAATCGAGTTTCAAGATC+TGG | - | chr8.1:9319918-9319937 | None:intergenic | 35.0% | |
ATTGGAGAGAAGTAATGAGT+GGG | - | chr8.1:9320674-9320693 | None:intergenic | 35.0% | |
CAAATACCTTTGTCTCCTTA+TGG | + | chr8.1:9320134-9320153 | MS.gene035262:intron | 35.0% | |
CCAAATAATCATCTGTTGAC+CGG | - | chr8.1:9320211-9320230 | None:intergenic | 35.0% | |
GAACTTCTCTGATTATTCCA+TGG | + | chr8.1:9320343-9320362 | MS.gene035262:intron | 35.0% | |
GCAATTCTCTTTATAGTAGG+AGG | - | chr8.1:9320786-9320805 | None:intergenic | 35.0% | |
GGTGATATTATTGGAACTGA+TGG | + | chr8.1:9320710-9320729 | MS.gene035262:CDS | 35.0% | |
GTCAACAGATGATTATTTGG+TGG | + | chr8.1:9320211-9320230 | MS.gene035262:intron | 35.0% | |
TATTGGAGAGAAGTAATGAG+TGG | - | chr8.1:9320675-9320694 | None:intergenic | 35.0% | |
TCTCTGATTATTCCATGGTA+GGG | + | chr8.1:9320348-9320367 | MS.gene035262:intron | 35.0% | |
TTCTCTGATTATTCCATGGT+AGG | + | chr8.1:9320347-9320366 | MS.gene035262:intron | 35.0% | |
TTGGTGAAGTACGATGAAAA+AGG | + | chr8.1:9320743-9320762 | MS.gene035262:CDS | 35.0% | |
! | ACCTACAGATTGTGATTTGT+GGG | + | chr8.1:9320526-9320545 | MS.gene035262:CDS | 35.0% |
! | GATTGTGATTTGTGGGTATT+TGG | + | chr8.1:9320533-9320552 | MS.gene035262:CDS | 35.0% |
!! | GAAATGATGGACACGTAAAT+TGG | - | chr8.1:9320162-9320181 | None:intergenic | 35.0% |
!!! | CTTTGCCAGATGATCTTTTT+TGG | + | chr8.1:9320474-9320493 | MS.gene035262:CDS | 35.0% |
!!! | TATATGGTTTTGGGTATGAC+CGG | + | chr8.1:9320189-9320208 | MS.gene035262:intron | 35.0% |
ACAGGTAAAATTGTGTGCCA+CGG | - | chr8.1:9320088-9320107 | None:intergenic | 40.0% | |
ACCCACAAATCACAATCTGT+AGG | - | chr8.1:9320530-9320549 | None:intergenic | 40.0% | |
ACTCTGTATACATAGCCACT+CGG | - | chr8.1:9320814-9320833 | None:intergenic | 40.0% | |
AGTACAAAGTGCATTCGTCA+TGG | + | chr8.1:9320615-9320634 | MS.gene035262:CDS | 40.0% | |
ATGGTAGGGTCACTCTTTAA+TGG | + | chr8.1:9320362-9320381 | MS.gene035262:intron | 40.0% | |
ATTAAAGAGTGACCCTACCA+TGG | - | chr8.1:9320363-9320382 | None:intergenic | 40.0% | |
ATTAGGGTAAGCAAGTCATG+AGG | - | chr8.1:9319750-9319769 | None:intergenic | 40.0% | |
CAGAGAAGTTCATATAAGGG+AGG | - | chr8.1:9320334-9320353 | None:intergenic | 40.0% | |
CCGGTCAACAGATGATTATT+TGG | + | chr8.1:9320208-9320227 | MS.gene035262:intron | 40.0% | |
CCTCTCCAAAAAAGATCATC+TGG | - | chr8.1:9320482-9320501 | None:intergenic | 40.0% | |
TCTTTAATGGGGCTATTCAC+TGG | + | chr8.1:9320375-9320394 | MS.gene035262:CDS | 40.0% | |
TGCTTACCCTAATTCTGTTG+AGG | + | chr8.1:9319757-9319776 | MS.gene035262:CDS | 40.0% | |
TGGTAGGGTCACTCTTTAAT+GGG | + | chr8.1:9320363-9320382 | MS.gene035262:intron | 40.0% | |
TGTTTGTGAACTCTAGTGGA+TGG | - | chr8.1:9320116-9320135 | None:intergenic | 40.0% | |
TTGGAACCATAAGGAGACAA+AGG | - | chr8.1:9320143-9320162 | None:intergenic | 40.0% | |
TTGGTGAGTTTCTCAGTGTA+TGG | + | chr8.1:9320552-9320571 | MS.gene035262:CDS | 40.0% | |
! | AACTGATGGTGAAGTTGGAT+TGG | + | chr8.1:9320724-9320743 | MS.gene035262:CDS | 40.0% |
! | ATTGGAACTGATGGTGAAGT+TGG | + | chr8.1:9320719-9320738 | MS.gene035262:CDS | 40.0% |
!!! | CCAGATGATCTTTTTTGGAG+AGG | + | chr8.1:9320479-9320498 | MS.gene035262:CDS | 40.0% |
AGCAAGTCATGAGGCAGATA+CGG | - | chr8.1:9319741-9319760 | None:intergenic | 45.0% | |
CCTAATTCTGTTGAGGTTGC+CGG | + | chr8.1:9319764-9319783 | MS.gene035262:CDS | 45.0% | |
CGGCAACCTCAACAGAATTA+GGG | - | chr8.1:9319766-9319785 | None:intergenic | 45.0% | |
CTCTGTATACATAGCCACTC+GGG | - | chr8.1:9320813-9320832 | None:intergenic | 45.0% | |
GGTAGGGTCACTCTTTAATG+GGG | + | chr8.1:9320364-9320383 | MS.gene035262:intron | 45.0% | |
GGTTCATGTTCAAGATCACC+TGG | - | chr8.1:9320509-9320528 | None:intergenic | 45.0% | |
TAAAATCCACGATGGGGATG+CGG | - | chr8.1:9320017-9320036 | None:intergenic | 45.0% | |
TAATGGGGCTATTCACTGGT+TGG | + | chr8.1:9320379-9320398 | MS.gene035262:CDS | 45.0% | |
! | GGGTTTATACTTTTGCACCG+TGG | + | chr8.1:9320068-9320087 | MS.gene035262:intron | 45.0% |
! | GTGGCACACAATTTTACCTG+TGG | + | chr8.1:9320087-9320106 | MS.gene035262:intron | 45.0% |
!! | AATTCTAGGACTGTGTGCAG+TGG | - | chr8.1:9319880-9319899 | None:intergenic | 45.0% |
!!! | CTTTTTTGGAGAGGTTTGCC+AGG | + | chr8.1:9320488-9320507 | MS.gene035262:CDS | 45.0% |
AAGTCATGAGGCAGATACGG+TGG | - | chr8.1:9319738-9319757 | None:intergenic | 50.0% | |
AGAGAATTGCACATCCCGAG+TGG | + | chr8.1:9320796-9320815 | MS.gene035262:CDS | 50.0% | |
AGTCTTTGCTTTCACTCCCC+CGG | + | chr8.1:9320831-9320850 | MS.gene035262:CDS | 50.0% | |
CCGGCAACCTCAACAGAATT+AGG | - | chr8.1:9319767-9319786 | None:intergenic | 50.0% | |
GAGGTGGACGGACAAAACTA+AGG | - | chr8.1:9319989-9320008 | None:intergenic | 50.0% | |
! | CTCTAGTGGATGGATTCCAC+AGG | - | chr8.1:9320106-9320125 | None:intergenic | 50.0% |
GATGCGGATCAGGAGGTGGA+CGG | - | chr8.1:9320001-9320020 | None:intergenic | 60.0% | |
CCACGATGGGGATGCGGATC+AGG | - | chr8.1:9320011-9320030 | None:intergenic | 65.0% | |
CCTGATCCGCATCCCCATCG+TGG | + | chr8.1:9320008-9320027 | MS.gene035262:intron | 65.0% | |
CGATGGGGATGCGGATCAGG+AGG | - | chr8.1:9320008-9320027 | None:intergenic | 65.0% | |
TGGGGATGCGGATCAGGAGG+TGG | - | chr8.1:9320005-9320024 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 9319723 | 9320856 | 9319723 | ID=MS.gene035262 |
chr8.1 | mRNA | 9319723 | 9320856 | 9319723 | ID=MS.gene035262.t1;Parent=MS.gene035262 |
chr8.1 | exon | 9319723 | 9319816 | 9319723 | ID=MS.gene035262.t1.exon1;Parent=MS.gene035262.t1 |
chr8.1 | CDS | 9319723 | 9319816 | 9319723 | ID=cds.MS.gene035262.t1;Parent=MS.gene035262.t1 |
chr8.1 | exon | 9320369 | 9320856 | 9320369 | ID=MS.gene035262.t1.exon2;Parent=MS.gene035262.t1 |
chr8.1 | CDS | 9320369 | 9320856 | 9320369 | ID=cds.MS.gene035262.t1;Parent=MS.gene035262.t1 |
Gene Sequence |
Protein sequence |