AlfalfaGEDB | MS.gene40878

M. sativa cultivar XinJiangDaYe / MS.gene40878

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40878.t1	RHN79377.1	76.7	163	36	1	1	163	259	419	2.10E-65	258.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40878.t1	A0A072VJR7	76.7	163	36	1	1	163	158	318	1.5e-65	258.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene40985	MS.gene40878	PPI
MS.gene041474	MS.gene40878	PPI
MS.gene27020	MS.gene40878	PPI
MS.gene40878	MS.gene59637	PPI
MS.gene58321	MS.gene40878	PPI
MS.gene86273	MS.gene40878	PPI
MS.gene041388	MS.gene40878	PPI
MS.gene062698	MS.gene40878	PPI
MS.gene96126	MS.gene40878	PPI
MS.gene51208	MS.gene40878	PPI
MS.gene40878	MS.gene27022	PPI
MS.gene40878	MS.gene88416	PPI
MS.gene016524	MS.gene40878	PPI
MS.gene50304	MS.gene40878	PPI
MS.gene40878	MS.gene003076	PPI
MS.gene045475	MS.gene40878	PPI
MS.gene40878	MS.gene87585	PPI
MS.gene88776	MS.gene40878	PPI
MS.gene40878	MS.gene024009	PPI
MS.gene40878	MS.gene036599	PPI
MS.gene59943	MS.gene40878	PPI
MS.gene90744	MS.gene40878	PPI
MS.gene51204	MS.gene40878	PPI
MS.gene58783	MS.gene40878	PPI
MS.gene036557	MS.gene40878	PPI
MS.gene041393	MS.gene40878	PPI
MS.gene50329	MS.gene40878	PPI
MS.gene40878	MS.gene006705	PPI
MS.gene40878	MS.gene061241	PPI
MS.gene40878	MS.gene035237	PPI
MS.gene57537	MS.gene40878	PPI
MS.gene059156	MS.gene40878	PPI
MS.gene84698	MS.gene40878	PPI
MS.gene40878	MS.gene38220	PPI
MS.gene40878	MS.gene40986	PPI
MS.gene40878	MS.gene041394	PPI
MS.gene009891	MS.gene40878	PPI
MS.gene066641	MS.gene40878	PPI
MS.gene82082	MS.gene40878	PPI
MS.gene40878	MS.gene03060	PPI
MS.gene40878	MS.gene036664	PPI
MS.gene40878	MS.gene024011	PPI
MS.gene40878	MS.gene053257	PPI
MS.gene40878	MS.gene58241	PPI
MS.gene40878	MS.gene064109	PPI
MS.gene90742	MS.gene40878	PPI
MS.gene40878	MS.gene058696	PPI
MS.gene40878	MS.gene009893	PPI
MS.gene57535	MS.gene40878	PPI
MS.gene025887	MS.gene40878	PPI
MS.gene87200	MS.gene40878	PPI
MS.gene058701	MS.gene40878	PPI
MS.gene90743	MS.gene40878	PPI
MS.gene44885	MS.gene40878	PPI
MS.gene060370	MS.gene40878	PPI
MS.gene50327	MS.gene40878	PPI
MS.gene40878	MS.gene036663	PPI
MS.gene066635	MS.gene40878	PPI
MS.gene010758	MS.gene40878	PPI
MS.gene40878	MS.gene57525	PPI
MS.gene87586	MS.gene40878	PPI
MS.gene40878	MS.gene030114	PPI
MS.gene40878	MS.gene045473	PPI
MS.gene68890	MS.gene40878	PPI
MS.gene51200	MS.gene40878	PPI
MS.gene40887	MS.gene40878	PPI
MS.gene40878	MS.gene045474	PPI
MS.gene50339	MS.gene40878	PPI
MS.gene40878	MS.gene036558	PPI
MS.gene046958	MS.gene40878	PPI
MS.gene034688	MS.gene40878	PPI
MS.gene060366	MS.gene40878	PPI
MS.gene40878	MS.gene40984	PPI
MS.gene87564	MS.gene40878	PPI
MS.gene88774	MS.gene40878	PPI
MS.gene40878	MS.gene064108	PPI
MS.gene48221	MS.gene40878	PPI
MS.gene40878	MS.gene016220	PPI
MS.gene57529	MS.gene40878	PPI
MS.gene063414	MS.gene40878	PPI
MS.gene009892	MS.gene40878	PPI
MS.gene40902	MS.gene40878	PPI
MS.gene40878	MS.gene58240	PPI
MS.gene40878	MS.gene27284	PPI
MS.gene40878	MS.gene063472	PPI
MS.gene27051	MS.gene40878	PPI
MS.gene40878	MS.gene034680	PPI
MS.gene021553	MS.gene40878	PPI
MS.gene26957	MS.gene40878	PPI
MS.gene060368	MS.gene40878	PPI
MS.gene033875	MS.gene40878	PPI
MS.gene40878	MS.gene48221	PPI
MS.gene77704	MS.gene40878	PPI
MS.gene036582	MS.gene40878	PPI
MS.gene27021	MS.gene40878	PPI
MS.gene066620	MS.gene40878	PPI
MS.gene035236	MS.gene40878	PPI
MS.gene58320	MS.gene40878	PPI
MS.gene066120	MS.gene40878	PPI
MS.gene041394	MS.gene40878	PPI
MS.gene40878	MS.gene063474	PPI
MS.gene059157	MS.gene40878	PPI
MS.gene40878	MS.gene51190	PPI
MS.gene58781	MS.gene40878	PPI
MS.gene40878	MS.gene044426	PPI
MS.gene57717	MS.gene40878	PPI
MS.gene028390	MS.gene40878	PPI
MS.gene40878	MS.gene034681	PPI
MS.gene011106	MS.gene40878	PPI
MS.gene033440	MS.gene40878	PPI
MS.gene62398	MS.gene40878	PPI
MS.gene60027	MS.gene40878	PPI
MS.gene44886	MS.gene40878	PPI
MS.gene40878	MS.gene57532	PPI
MS.gene038756	MS.gene40878	PPI
MS.gene40878	MS.gene033442	PPI
MS.gene40904	MS.gene40878	PPI
MS.gene35068	MS.gene40878	PPI
MS.gene041390	MS.gene40878	PPI
MS.gene24286	MS.gene40878	PPI
MS.gene058693	MS.gene40878	PPI
MS.gene92376	MS.gene40878	PPI
MS.gene40878	MS.gene009892	PPI
MS.gene000035	MS.gene40878	PPI
MS.gene070462	MS.gene40878	PPI
MS.gene87569	MS.gene40878	PPI
MS.gene31637	MS.gene40878	PPI
MS.gene87573	MS.gene40878	PPI
MS.gene40878	MS.gene058669	PPI
MS.gene40878	MS.gene066120	PPI
MS.gene019504	MS.gene40878	PPI
MS.gene034762	MS.gene40878	PPI
MS.gene51207	MS.gene40878	PPI
MS.gene40878	MS.gene041489	PPI
MS.gene50297	MS.gene40878	PPI
MS.gene40878	MS.gene024000	PPI
MS.gene58716	MS.gene40878	PPI
MS.gene68580	MS.gene40878	PPI
MS.gene033444	MS.gene40878	PPI
MS.gene019505	MS.gene40878	PPI
MS.gene50306	MS.gene40878	PPI
MS.gene40878	MS.gene034677	PPI
MS.gene58785	MS.gene40878	PPI
MS.gene40878	MS.gene035238	PPI
MS.gene066639	MS.gene40878	PPI
MS.gene26949	MS.gene40878	PPI
MS.gene51189	MS.gene40878	PPI
MS.gene40878	MS.gene064114	PPI
MS.gene50309	MS.gene40878	PPI
MS.gene40878	MS.gene87584	PPI
MS.gene036760	MS.gene40878	PPI
MS.gene77857	MS.gene40878	PPI
MS.gene40878	MS.gene58315	PPI
MS.gene58311	MS.gene40878	PPI
MS.gene40878	MS.gene80610	PPI
MS.gene57527	MS.gene40878	PPI
MS.gene033432	MS.gene40878	PPI
MS.gene033426	MS.gene40878	PPI
MS.gene59639	MS.gene40878	PPI
MS.gene031590	MS.gene40878	PPI
MS.gene036584	MS.gene40878	PPI
MS.gene67687	MS.gene40878	PPI
MS.gene40878	MS.gene85454	PPI
MS.gene035261	MS.gene40878	PPI
MS.gene40878	MS.gene041391	PPI
MS.gene063670	MS.gene40878	PPI
MS.gene57530	MS.gene40878	PPI
MS.gene066626	MS.gene40878	PPI
MS.gene019506	MS.gene40878	PPI
MS.gene50326	MS.gene40878	PPI
MS.gene42451	MS.gene40878	PPI
MS.gene69309	MS.gene40878	PPI
MS.gene40878	MS.gene87554	PPI
MS.gene024002	MS.gene40878	PPI
MS.gene40878	MS.gene064083	PPI
MS.gene40878	MS.gene048193	PPI
MS.gene40878	MS.gene58783	PPI
MS.gene40878	MS.gene024420	PPI
MS.gene034686	MS.gene40878	PPI
MS.gene40878	MS.gene024008	PPI
MS.gene40982	MS.gene40878	PPI
MS.gene070461	MS.gene40878	PPI
MS.gene42452	MS.gene40878	PPI
MS.gene40878	MS.gene54541	PPI
MS.gene40878	MS.gene053299	PPI
MS.gene40878	MS.gene28758	PPI
MS.gene40878	MS.gene42451	PPI
MS.gene036662	MS.gene40878	PPI
MS.gene87563	MS.gene40878	PPI
MS.gene57526	MS.gene40878	PPI
MS.gene24212	MS.gene40878	PPI
MS.gene051820	MS.gene40878	PPI
MS.gene97996	MS.gene40878	PPI
MS.gene035235	MS.gene40878	PPI
MS.gene40988	MS.gene40878	PPI
MS.gene81242	MS.gene40878	PPI
MS.gene26101	MS.gene40878	PPI
MS.gene27283	MS.gene40878	PPI
MS.gene64203	MS.gene40878	PPI
MS.gene045140	MS.gene40878	PPI
MS.gene024004	MS.gene40878	PPI
MS.gene42444	MS.gene40878	PPI
MS.gene40878	MS.gene58319	PPI
MS.gene51202	MS.gene40878	PPI
MS.gene059101	MS.gene40878	PPI
MS.gene87562	MS.gene40878	PPI
MS.gene066623	MS.gene40878	PPI
MS.gene064104	MS.gene40878	PPI
MS.gene40878	MS.gene44428	PPI
MS.gene041491	MS.gene40878	PPI
MS.gene033443	MS.gene40878	PPI
MS.gene50337	MS.gene40878	PPI
MS.gene40878	MS.gene058703	PPI
MS.gene43789	MS.gene40878	PPI
MS.gene059096	MS.gene40878	PPI
MS.gene57528	MS.gene40878	PPI
MS.gene40878	MS.gene012215	PPI
MS.gene006711	MS.gene40878	PPI
MS.gene50332	MS.gene40878	PPI
MS.gene27285	MS.gene40878	PPI
MS.gene072177	MS.gene40878	PPI
MS.gene064091	MS.gene40878	PPI
MS.gene064112	MS.gene40878	PPI
MS.gene045476	MS.gene40878	PPI
MS.gene24208	MS.gene40878	PPI
MS.gene061241	MS.gene40878	PPI
MS.gene50307	MS.gene40878	PPI
MS.gene24213	MS.gene40878	PPI
MS.gene43796	MS.gene40878	PPI
MS.gene034690	MS.gene40878	PPI
MS.gene044429	MS.gene40878	PPI
MS.gene40878	MS.gene22715	PPI
MS.gene40878	MS.gene58316	PPI
MS.gene85454	MS.gene40878	PPI
MS.gene58312	MS.gene40878	PPI
MS.gene96407	MS.gene40878	PPI
MS.gene40878	MS.gene87564	PPI
MS.gene40878	MS.gene36595	PPI
MS.gene51191	MS.gene40878	PPI
MS.gene40878	MS.gene061240	PPI
MS.gene85043	MS.gene40878	PPI
MS.gene064086	MS.gene40878	PPI
MS.gene40878	MS.gene041473	PPI
MS.gene033430	MS.gene40878	PPI
MS.gene50298	MS.gene40878	PPI
MS.gene40878	MS.gene50311	PPI
MS.gene40878	MS.gene058989	PPI
MS.gene036583	MS.gene40878	PPI
MS.gene88780	MS.gene40878	PPI
MS.gene40878	MS.gene57538	PPI
MS.gene40878	MS.gene041468	PPI
MS.gene055694	MS.gene40878	PPI
MS.gene40878	MS.gene058693	PPI
MS.gene40878	MS.gene27319	PPI
MS.gene40878	MS.gene041395	PPI
MS.gene71159	MS.gene40878	PPI
MS.gene40878	MS.gene42447	PPI
MS.gene96448	MS.gene40878	PPI
MS.gene40878	MS.gene51189	PPI
MS.gene77858	MS.gene40878	PPI
MS.gene058692	MS.gene40878	PPI
MS.gene041392	MS.gene40878	PPI
MS.gene033083	MS.gene40878	PPI
MS.gene63658	MS.gene40878	PPI
MS.gene033081	MS.gene40878	PPI
MS.gene40878	MS.gene044425	PPI
MS.gene031591	MS.gene40878	PPI
MS.gene035262	MS.gene40878	PPI
MS.gene40878	MS.gene40988	PPI
MS.gene51199	MS.gene40878	PPI
MS.gene40878	MS.gene24173	PPI
MS.gene40878	MS.gene036584	PPI
MS.gene064108	MS.gene40878	PPI
MS.gene58315	MS.gene40878	PPI
MS.gene57536	MS.gene40878	PPI
MS.gene019503	MS.gene40878	PPI
MS.gene87559	MS.gene40878	PPI
MS.gene041473	MS.gene40878	PPI
MS.gene033431	MS.gene40878	PPI
MS.gene40878	MS.gene023999	PPI
MS.gene40878	MS.gene69307	PPI
MS.gene041475	MS.gene40878	PPI
MS.gene31587	MS.gene40878	PPI
MS.gene033441	MS.gene40878	PPI
MS.gene40878	MS.gene036581	PPI
MS.gene063826	MS.gene40878	PPI
MS.gene40878	MS.gene000036	PPI
MS.gene060367	MS.gene40878	PPI
MS.gene40878	MS.gene50320	PPI
MS.gene44892	MS.gene40878	PPI
MS.gene40878	MS.gene58314	PPI
MS.gene40878	MS.gene87557	PPI
MS.gene036664	MS.gene40878	PPI
MS.gene40878	MS.gene035263	PPI
MS.gene58239	MS.gene40878	PPI
MS.gene40878	MS.gene67501	PPI
MS.gene40878	MS.gene96406	PPI
MS.gene000038	MS.gene40878	PPI
MS.gene57531	MS.gene40878	PPI
MS.gene064111	MS.gene40878	PPI
MS.gene40878	MS.gene51201	PPI
MS.gene67501	MS.gene40878	PPI
MS.gene26829	MS.gene40878	PPI
MS.gene39262	MS.gene40878	PPI
MS.gene40878	MS.gene50336	PPI
MS.gene58241	MS.gene40878	PPI
MS.gene053256	MS.gene40878	PPI
MS.gene019507	MS.gene40878	PPI
MS.gene045474	MS.gene40878	PPI
MS.gene75875	MS.gene40878	PPI
MS.gene40878	MS.gene77704	PPI
MS.gene041470	MS.gene40878	PPI
MS.gene058694	MS.gene40878	PPI
MS.gene064090	MS.gene40878	PPI
MS.gene54049	MS.gene40878	PPI
MS.gene40878	MS.gene047279	PPI
MS.gene40878	MS.gene50305	PPI
MS.gene015089	MS.gene40878	PPI
MS.gene006710	MS.gene40878	PPI
MS.gene40878	MS.gene032969	PPI
MS.gene58722	MS.gene40878	PPI
MS.gene40878	MS.gene68890	PPI
MS.gene011679	MS.gene40878	PPI
MS.gene40878	MS.gene42445	PPI
MS.gene033079	MS.gene40878	PPI
MS.gene40878	MS.gene86273	PPI
MS.gene64001	MS.gene40878	PPI
MS.gene40878	MS.gene26830	PPI
MS.gene57533	MS.gene40878	PPI
MS.gene58317	MS.gene40878	PPI
MS.gene36704	MS.gene40878	PPI
MS.gene032970	MS.gene40878	PPI
MS.gene40878	MS.gene51207	PPI
MS.gene40878	MS.gene63657	PPI
MS.gene40878	MS.gene023996	PPI
MS.gene77856	MS.gene40878	PPI
MS.gene24826	MS.gene40878	PPI
MS.gene40878	MS.gene50301	PPI
MS.gene036556	MS.gene40878	PPI
MS.gene58313	MS.gene40878	PPI
MS.gene40878	MS.gene031590	PPI
MS.gene066622	MS.gene40878	PPI
MS.gene44887	MS.gene40878	PPI
MS.gene39265	MS.gene40878	PPI
MS.gene51188	MS.gene40878	PPI
MS.gene63655	MS.gene40878	PPI
MS.gene44883	MS.gene40878	PPI
MS.gene40878	MS.gene064086	PPI
MS.gene40878	MS.gene035234	PPI
MS.gene41046	MS.gene40878	PPI
MS.gene063472	MS.gene40878	PPI
MS.gene87588	MS.gene40878	PPI
MS.gene017412	MS.gene40878	PPI
MS.gene40878	MS.gene90742	PPI
MS.gene80884	MS.gene40878	PPI
MS.gene40878	MS.gene50332	PPI
MS.gene40878	MS.gene024979	PPI
MS.gene51192	MS.gene40878	PPI
MS.gene009883	MS.gene40878	PPI
MS.gene041395	MS.gene40878	PPI
MS.gene40886	MS.gene40878	PPI
MS.gene044563	MS.gene40878	PPI
MS.gene069075	MS.gene40878	PPI
MS.gene033427	MS.gene40878	PPI
MS.gene40878	MS.gene24826	PPI
MS.gene40878	MS.gene43790	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40878.t1	MTR_1g055175	76.687	163	36	1	1	163	41	201	6.03e-87	253
MS.gene40878.t1	MTR_1g055165	76.687	163	36	1	1	163	158	318	9.05e-86	254
MS.gene40878.t1	MTR_1g055135	72.727	165	42	2	1	163	212	375	2.80e-76	232
MS.gene40878.t1	MTR_1g055195	63.804	163	56	3	1	163	319	478	2.36e-61	197
MS.gene40878.t1	MTR_5g097210	65.823	158	50	3	2	159	206	359	8.60e-60	190
MS.gene40878.t1	MTR_1g055250	65.693	137	43	3	1	137	111	243	8.57e-55	176
MS.gene40878.t1	MTR_4g117720	57.988	169	61	7	2	163	213	378	4.03e-51	167
MS.gene40878.t1	MTR_6g060650	55.828	163	67	4	1	162	214	372	5.52e-51	167
MS.gene40878.t1	MTR_4g109280	57.055	163	62	6	4	163	202	359	1.67e-48	160
MS.gene40878.t1	MTR_4g118370	54.375	160	51	5	1	160	120	257	1.18e-46	152
MS.gene40878.t1	MTR_4g117750	56.098	164	64	4	1	159	195	355	2.83e-46	157
MS.gene40878.t1	MTR_4g117750	48.182	110	54	3	54	161	373	481	9.64e-23	93.6
MS.gene40878.t1	MTR_4g094365	51.829	164	75	3	2	163	203	364	9.22e-45	150
MS.gene40878.t1	MTR_3g103020	55.556	162	65	5	5	163	221	378	2.23e-44	150
MS.gene40878.t1	MTR_4g116330	51.786	168	72	6	1	163	217	380	3.00e-44	150
MS.gene40878.t1	MTR_4g116320	53.049	164	66	5	2	160	98	255	8.77e-44	145
MS.gene40878.t1	MTR_6g463430	52.201	159	69	4	6	163	50	202	8.55e-43	141
MS.gene40878.t1	MTR_5g070080	52.976	168	66	7	2	163	226	386	9.52e-42	143
MS.gene40878.t1	MTR_4g122850	49.689	161	76	4	5	163	207	364	3.73e-41	142
MS.gene40878.t1	MTR_5g070088	51.572	159	73	4	1	157	223	379	4.20e-41	142
MS.gene40878.t1	MTR_3g034180	50.617	162	74	5	2	162	332	488	7.91e-41	143
MS.gene40878.t1	MTR_4g118380	54.930	142	53	4	1	133	216	355	1.11e-39	137
MS.gene40878.t1	MTR_8g433030	53.503	157	65	6	4	157	185	336	2.35e-39	136
MS.gene40878.t1	MTR_8g032390	53.503	157	65	6	4	157	218	369	6.15e-39	135
MS.gene40878.t1	MTR_4g117850	50.943	159	69	5	4	156	218	373	7.77e-39	135
MS.gene40878.t1	MTR_8g040935	50.898	167	69	7	5	163	47	208	9.36e-39	131
MS.gene40878.t1	MTR_5g070130	52.258	155	68	5	6	157	219	370	1.13e-38	135
MS.gene40878.t1	MTR_4g109270	50.311	161	73	5	6	163	208	364	1.78e-38	134
MS.gene40878.t1	MTR_4g023130	50.311	161	70	6	5	162	159	312	2.85e-38	132
MS.gene40878.t1	MTR_4g023070	49.419	172	69	6	5	162	202	369	3.37e-38	134
MS.gene40878.t1	MTR_4g023080	50.311	161	70	6	5	162	200	353	3.66e-38	133
MS.gene40878.t1	MTR_4g021785	48.447	161	75	5	5	163	201	355	5.81e-37	130
MS.gene40878.t1	MTR_4g023380	44.324	185	72	7	5	163	200	379	8.53e-37	130
MS.gene40878.t1	MTR_8g433040	51.408	142	63	3	23	163	228	364	5.39e-36	128
MS.gene40878.t1	MTR_8g032380	51.408	142	63	3	23	163	228	364	5.39e-36	128
MS.gene40878.t1	MTR_4g118400	49.686	159	61	6	1	157	153	294	1.00e-35	125
MS.gene40878.t1	MTR_4g023090	45.143	175	75	7	5	162	215	385	1.25e-35	127
MS.gene40878.t1	MTR_3g034160	50.000	162	75	4	2	162	218	374	3.41e-35	126
MS.gene40878.t1	MTR_3g034130	47.651	149	73	4	2	149	218	362	2.73e-34	123
MS.gene40878.t1	MTR_4g023120	46.023	176	71	6	5	163	202	370	2.85e-34	123
MS.gene40878.t1	MTR_7g079400	45.062	162	83	3	6	163	178	337	5.23e-34	122
MS.gene40878.t1	MTR_4g118360	50.000	128	61	3	37	163	1	126	6.47e-34	116
MS.gene40878.t1	MTR_4g023150	47.239	163	75	6	5	161	201	358	1.53e-33	121
MS.gene40878.t1	MTR_4g023190	47.853	163	74	6	5	161	200	357	5.65e-33	120
MS.gene40878.t1	MTR_4g117780	45.122	164	86	4	2	162	204	366	7.72e-33	119
MS.gene40878.t1	MTR_7g079420	44.375	160	84	4	6	163	988	1144	1.37e-32	122
MS.gene40878.t1	MTR_4g117770	45.732	164	85	4	2	162	204	366	1.66e-32	119
MS.gene40878.t1	MTR_4g117810	45.732	164	85	4	2	162	204	366	1.66e-32	119
MS.gene40878.t1	MTR_4g023200	46.012	163	77	6	5	161	201	358	2.77e-32	118
MS.gene40878.t1	MTR_8g102520	40.741	162	94	2	2	163	163	322	1.91e-30	112
MS.gene40878.t1	MTR_4g117530	41.875	160	57	4	5	163	129	253	7.78e-30	109
MS.gene40878.t1	MTR_4g117870	46.923	130	66	2	34	163	141	267	2.01e-29	108
MS.gene40878.t1	MTR_7g079370	43.871	155	80	5	6	158	202	351	1.13e-28	108
MS.gene40878.t1	MTR_5g023000	56.250	96	34	5	72	163	8	99	1.92e-24	91.3
MS.gene40878.t1	MTR_7g079450	40.426	141	78	3	23	163	3	137	2.21e-24	92.4
MS.gene40878.t1	MTR_4g116330	39.286	168	54	6	1	163	217	341	2.71e-23	94.0
MS.gene40878.t1	MTR_2g048580	36.585	164	90	6	2	163	191	342	2.86e-23	94.0
MS.gene40878.t1	MTR_4g023440	38.125	160	55	5	5	162	214	331	1.24e-22	92.0
MS.gene40878.t1	MTR_1g055145	61.039	77	27	1	3	79	129	202	1.31e-21	88.6
MS.gene40878.t1	MTR_4g122860	37.500	168	70	6	1	162	181	319	2.05e-21	89.0
MS.gene40878.t1	MTR_8g098830	37.692	130	78	3	2	131	68	194	5.22e-17	75.5
MS.gene40878.t1	MTR_7g117720	38.710	124	64	4	43	158	153	272	4.36e-15	70.9
MS.gene40878.t1	MTR_4g121580	39.370	127	45	6	5	129	222	318	1.52e-13	67.4
MS.gene40878.t1	MTR_8g013005	55.000	60	26	1	104	163	1	59	1.52e-13	62.0
MS.gene40878.t1	MTR_4g114700	43.182	88	47	2	70	154	131	218	2.30e-13	65.9
MS.gene40878.t1	MTR_4g023100	34.454	119	68	5	49	162	5	118	5.90e-13	62.4
MS.gene40878.t1	MTR_8g013010	56.452	62	21	1	2	63	254	309	7.25e-12	62.4
MS.gene40878.t1	MTR_4g117430	54.237	59	25	1	5	63	96	152	2.88e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 36 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTGTTGCCTTTCATTTAA+TGG	0.113478	1.4:+46541337	MS.gene40878:CDS
GTTTCAAAGAATCTAATTTA+TGG	0.175078	1.4:+46541411	MS.gene40878:CDS
TTTCTCAGTCTATGGGTTTC+GGG	0.238313	1.4:+46541446	MS.gene40878:CDS
TTAGAGGATTTCTCAGTCTA+TGG	0.277856	1.4:+46541438	MS.gene40878:CDS
ACAAGGGTAAAGTTGATATA+TGG	0.287530	1.4:+46541471	MS.gene40878:CDS
ATTTCTCAGTCTATGGGTTT+CGG	0.288923	1.4:+46541445	MS.gene40878:CDS
TATTCAAAATCATCATCATT+TGG	0.309421	1.4:-46541386	None:intergenic
TTTCAAAGAATCTAATTTAT+GGG	0.327158	1.4:+46541412	MS.gene40878:CDS
TCTAATTTATGGGTATTTAG+AGG	0.356771	1.4:+46541422	MS.gene40878:CDS
ATTCAAAATCATCATCATTT+GGG	0.373726	1.4:-46541385	None:intergenic
TCTTCAATGGGGCTATTCAC+TGG	0.419380	1.4:+46541282	MS.gene40878:CDS
CAAGGGTAAAGTTGATATAT+GGG	0.420388	1.4:+46541472	MS.gene40878:CDS
AATACAAAGTGCAGTCATCT+TGG	0.424763	1.4:+46541504	MS.gene40878:CDS
TGGTAGAGTCAGTCTTCAAT+GGG	0.445013	1.4:+46541270	MS.gene40878:CDS
ATGGTAGAGTCAGTCTTCAA+TGG	0.450181	1.4:+46541269	MS.gene40878:CDS
CAATGGGGCTATTCACTGGT+TGG	0.483990	1.4:+46541286	MS.gene40878:CDS
TTGCCTTTCATTTAATGGAA+AGG	0.488920	1.4:+46541342	MS.gene40878:CDS
TAGAGGATTTCTCAGTCTAT+GGG	0.489737	1.4:+46541439	MS.gene40878:CDS
TTCTCAGTCTATGGGTTTCG+GGG	0.502147	1.4:+46541447	MS.gene40878:CDS
TAAGCTTCCTCATTGTCACT+AGG	0.504127	1.4:-46541737	None:intergenic
TATCCTTTCCATTAAATGAA+AGG	0.507802	1.4:-46541345	None:intergenic
GTTGGAACAGATTACCGTAC+TGG	0.514745	1.4:+46541605	MS.gene40878:CDS
TACAAGGGCAACGTTATGAA+TGG	0.537235	1.4:-46541558	None:intergenic
AAATCATCATCATTTGGGAG+AGG	0.551980	1.4:-46541380	None:intergenic
AAGCTTCCTCATTGTCACTA+GGG	0.552135	1.4:-46541736	None:intergenic
TTCACGAAATGAATTCCGAT+TGG	0.558524	1.4:+46541685	MS.gene40878:CDS
GAACAGATTACCGTACTGGA+TGG	0.571251	1.4:+46541609	MS.gene40878:CDS
ACTCTGTATACATAGCCAAT+CGG	0.573189	1.4:-46541700	None:intergenic
CATATCTCACCCATCCAGTA+CGG	0.584321	1.4:-46541619	None:intergenic
AACAGATTACCGTACTGGAT+GGG	0.623237	1.4:+46541610	MS.gene40878:CDS
TTCACTCCCTAGTGACAATG+AGG	0.626833	1.4:+46541730	MS.gene40878:CDS
TCTCAGTCTATGGGTTTCGG+GGG	0.637073	1.4:+46541448	MS.gene40878:CDS
GCTATTCGTCACGATAGACG+TGG	0.699166	1.4:+46541308	MS.gene40878:CDS
CTATTCGTCACGATAGACGT+GGG	0.735650	1.4:+46541309	MS.gene40878:CDS
TGGGTGAGATATGATGACAA+AGG	0.747254	1.4:+46541629	MS.gene40878:CDS
GGTAGAGTCAGTCTTCAATG+GGG	0.775884	1.4:+46541271	MS.gene40878:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCAAAGAATCTAATTTAT+GGG	+	chr1.4:46541412-46541431	MS.gene40878:CDS	15.0%
!!	ATTCAAAATCATCATCATTT+GGG	-	chr1.4:46541388-46541407	None:intergenic	20.0%
!!	GTTTCAAAGAATCTAATTTA+TGG	+	chr1.4:46541411-46541430	MS.gene40878:CDS	20.0%
!!	TATTCAAAATCATCATCATT+TGG	-	chr1.4:46541389-46541408	None:intergenic	20.0%
!	TATCCTTTCCATTAAATGAA+AGG	-	chr1.4:46541348-46541367	None:intergenic	25.0%
!	TATTGTTGCCTTTCATTTAA+TGG	+	chr1.4:46541337-46541356	MS.gene40878:CDS	25.0%
!	TCTAATTTATGGGTATTTAG+AGG	+	chr1.4:46541422-46541441	MS.gene40878:CDS	25.0%
	ACAAAAAGTGGTGATATTGT+TGG	+	chr1.4:46541587-46541606	MS.gene40878:CDS	30.0%
	TTGCCTTTCATTTAATGGAA+AGG	+	chr1.4:46541342-46541361	MS.gene40878:CDS	30.0%
!	ACTTTTTGTGCAACATACAA+GGG	-	chr1.4:46541576-46541595	None:intergenic	30.0%
!!	ACAAGGGTAAAGTTGATATA+TGG	+	chr1.4:46541471-46541490	MS.gene40878:CDS	30.0%
!!	CAAGGGTAAAGTTGATATAT+GGG	+	chr1.4:46541472-46541491	MS.gene40878:CDS	30.0%
	AAATCATCATCATTTGGGAG+AGG	-	chr1.4:46541383-46541402	None:intergenic	35.0%
	AATACAAAGTGCAGTCATCT+TGG	+	chr1.4:46541504-46541523	MS.gene40878:CDS	35.0%
	ACTCTGTATACATAGCCAAT+CGG	-	chr1.4:46541703-46541722	None:intergenic	35.0%
	ATTTCTCAGTCTATGGGTTT+CGG	+	chr1.4:46541445-46541464	MS.gene40878:CDS	35.0%
	CTTGTATGTTGCACAAAAAG+TGG	+	chr1.4:46541575-46541594	MS.gene40878:CDS	35.0%
	TAGAGGATTTCTCAGTCTAT+GGG	+	chr1.4:46541439-46541458	MS.gene40878:CDS	35.0%
	TTAGAGGATTTCTCAGTCTA+TGG	+	chr1.4:46541438-46541457	MS.gene40878:CDS	35.0%
	TTCACGAAATGAATTCCGAT+TGG	+	chr1.4:46541685-46541704	MS.gene40878:CDS	35.0%
!!	CACTTTTTGTGCAACATACA+AGG	-	chr1.4:46541577-46541596	None:intergenic	35.0%
	AACAGATTACCGTACTGGAT+GGG	+	chr1.4:46541610-46541629	MS.gene40878:CDS	40.0%
	AAGCTTCCTCATTGTCACTA+GGG	-	chr1.4:46541739-46541758	None:intergenic	40.0%
	ATGGTAGAGTCAGTCTTCAA+TGG	+	chr1.4:46541269-46541288	MS.gene40878:CDS	40.0%
	TAAGCTTCCTCATTGTCACT+AGG	-	chr1.4:46541740-46541759	None:intergenic	40.0%
	TACAAGGGCAACGTTATGAA+TGG	-	chr1.4:46541561-46541580	None:intergenic	40.0%
	TGGGTGAGATATGATGACAA+AGG	+	chr1.4:46541629-46541648	MS.gene40878:CDS	40.0%
	TGGTAGAGTCAGTCTTCAAT+GGG	+	chr1.4:46541270-46541289	MS.gene40878:CDS	40.0%
	TTTCTCAGTCTATGGGTTTC+GGG	+	chr1.4:46541446-46541465	MS.gene40878:CDS	40.0%
	CATATCTCACCCATCCAGTA+CGG	-	chr1.4:46541622-46541641	None:intergenic	45.0%
	CTATTCGTCACGATAGACGT+GGG	+	chr1.4:46541309-46541328	MS.gene40878:CDS	45.0%
	GAACAGATTACCGTACTGGA+TGG	+	chr1.4:46541609-46541628	MS.gene40878:CDS	45.0%
	GGTAGAGTCAGTCTTCAATG+GGG	+	chr1.4:46541271-46541290	MS.gene40878:CDS	45.0%
	GTTGGAACAGATTACCGTAC+TGG	+	chr1.4:46541605-46541624	MS.gene40878:CDS	45.0%
	TCTTCAATGGGGCTATTCAC+TGG	+	chr1.4:46541282-46541301	MS.gene40878:CDS	45.0%
	TTCACTCCCTAGTGACAATG+AGG	+	chr1.4:46541730-46541749	MS.gene40878:CDS	45.0%
	TTCTCAGTCTATGGGTTTCG+GGG	+	chr1.4:46541447-46541466	MS.gene40878:CDS	45.0%
	CAATGGGGCTATTCACTGGT+TGG	+	chr1.4:46541286-46541305	MS.gene40878:CDS	50.0%
	GCTATTCGTCACGATAGACG+TGG	+	chr1.4:46541308-46541327	MS.gene40878:CDS	50.0%
	TCTCAGTCTATGGGTTTCGG+GGG	+	chr1.4:46541448-46541467	MS.gene40878:CDS	50.0%
	CTATGGGTTTCGGGGGACAA+GGG	+	chr1.4:46541455-46541474	MS.gene40878:CDS	55.0%
	TCTATGGGTTTCGGGGGACA+AGG	+	chr1.4:46541454-46541473	MS.gene40878:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	46541269	46541760	46541269	ID=MS.gene40878
chr1.4	mRNA	46541269	46541760	46541269	ID=MS.gene40878.t1;Parent=MS.gene40878
chr1.4	exon	46541269	46541760	46541269	ID=MS.gene40878.t1.exon1;Parent=MS.gene40878.t1
chr1.4	CDS	46541269	46541760	46541269	ID=cds.MS.gene40878.t1;Parent=MS.gene40878.t1

Gene Sequence

>MS.gene40878

ATGGTAGAGTCAGTCTTCAATGGGGCTATTCACTGGTTGGCTATTCGTCACGATAGACGTGGGTATGTTATTGTTGCCTTTCATTTAATGGAAAGGATACTTCTAGAAATTCCTCTCCCAAATGATGATGATTTTGAATATAGTTTCAAAGAATCTAATTTATGGGTATTTAGAGGATTTCTCAGTCTATGGGTTTCGGGGGACAAGGGTAAAGTTGATATATGGGTGATGAAAGAATACAAAGTGCAGTCATCTTGGACTAAAACTCTTGTTCTTACTACTTATGATACCATTCATAACGTTGCCCTTGTATGTTGCACAAAAAGTGGTGATATTGTTGGAACAGATTACCGTACTGGATGGGTGAGATATGATGACAAAGGAGAGTTTCTAGAGCATATCTACTATTGCATAGATTCACGAAATGAATTCCGATTGGCTATGTATACAGAGTCTTTGCTTTCACTCCCTAGTGACAATGAGGAAGCTTAA

Protein sequence

>MS.gene40878.t1

MVESVFNGAIHWLAIRHDRRGYVIVAFHLMERILLEIPLPNDDDFEYSFKESNLWVFRGFLSLWVSGDKGKVDIWVMKEYKVQSSWTKTLVLTTYDTIHNVALVCCTKSGDIVGTDYRTGWVRYDDKGEFLEHIYYCIDSRNEFRLAMYTESLLSLPSDNEEA