Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71159.t1 | GAU19787.1 | 52.8 | 305 | 129 | 6 | 1 | 301 | 74 | 367 | 7.70E-77 | 297.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71159.t1 | A0A2Z6MNC9 | 52.8 | 305 | 129 | 6 | 1 | 301 | 74 | 367 | 5.6e-77 | 297.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71159.t1 | MTR_7g079400 | 53.333 | 300 | 124 | 6 | 8 | 301 | 48 | 337 | 1.06e-96 | 288 |
MS.gene71159.t1 | MTR_7g079370 | 51.780 | 309 | 131 | 8 | 1 | 298 | 52 | 353 | 1.56e-92 | 279 |
MS.gene71159.t1 | MTR_8g102520 | 53.668 | 259 | 108 | 5 | 46 | 301 | 73 | 322 | 2.70e-80 | 246 |
MS.gene71159.t1 | MTR_7g079420 | 50.336 | 298 | 91 | 9 | 16 | 301 | 892 | 1144 | 2.29e-74 | 247 |
MS.gene71159.t1 | MTR_2g048580 | 47.249 | 309 | 117 | 12 | 1 | 301 | 72 | 342 | 4.45e-73 | 228 |
MS.gene71159.t1 | MTR_4g117720 | 44.590 | 305 | 150 | 9 | 1 | 297 | 80 | 373 | 6.99e-69 | 219 |
MS.gene71159.t1 | MTR_6g060650 | 42.540 | 315 | 152 | 10 | 1 | 300 | 72 | 372 | 4.08e-64 | 206 |
MS.gene71159.t1 | MTR_3g103020 | 41.883 | 308 | 160 | 9 | 1 | 301 | 83 | 378 | 6.52e-60 | 196 |
MS.gene71159.t1 | MTR_4g109280 | 40.836 | 311 | 153 | 10 | 1 | 301 | 70 | 359 | 6.06e-58 | 190 |
MS.gene71159.t1 | MTR_5g097210 | 40.924 | 303 | 149 | 10 | 4 | 296 | 76 | 358 | 6.23e-57 | 187 |
MS.gene71159.t1 | MTR_4g109270 | 40.584 | 308 | 159 | 9 | 1 | 301 | 74 | 364 | 4.33e-56 | 185 |
MS.gene71159.t1 | MTR_8g098830 | 57.407 | 162 | 66 | 2 | 108 | 267 | 34 | 194 | 7.88e-55 | 178 |
MS.gene71159.t1 | MTR_4g094365 | 39.145 | 304 | 168 | 8 | 2 | 301 | 74 | 364 | 5.03e-54 | 180 |
MS.gene71159.t1 | MTR_3g034180 | 39.744 | 312 | 165 | 10 | 1 | 300 | 188 | 488 | 5.65e-54 | 183 |
MS.gene71159.t1 | MTR_4g118380 | 40.816 | 294 | 139 | 11 | 1 | 269 | 72 | 355 | 6.07e-54 | 179 |
MS.gene71159.t1 | MTR_7g079450 | 61.972 | 142 | 48 | 2 | 160 | 301 | 2 | 137 | 4.16e-52 | 167 |
MS.gene71159.t1 | MTR_5g070130 | 38.387 | 310 | 162 | 11 | 1 | 295 | 75 | 370 | 4.20e-52 | 176 |
MS.gene71159.t1 | MTR_3g034130 | 38.652 | 282 | 160 | 6 | 1 | 273 | 74 | 351 | 4.56e-52 | 175 |
MS.gene71159.t1 | MTR_8g433040 | 38.436 | 307 | 160 | 10 | 1 | 301 | 81 | 364 | 5.60e-52 | 174 |
MS.gene71159.t1 | MTR_8g032380 | 38.436 | 307 | 160 | 10 | 1 | 301 | 81 | 364 | 5.60e-52 | 174 |
MS.gene71159.t1 | MTR_4g117770 | 40.065 | 307 | 166 | 8 | 1 | 301 | 73 | 367 | 2.14e-51 | 173 |
MS.gene71159.t1 | MTR_4g117810 | 40.065 | 307 | 166 | 8 | 1 | 301 | 73 | 367 | 2.14e-51 | 173 |
MS.gene71159.t1 | MTR_4g023080 | 40.000 | 300 | 148 | 10 | 1 | 294 | 74 | 347 | 1.70e-50 | 171 |
MS.gene71159.t1 | MTR_4g122850 | 37.662 | 308 | 175 | 10 | 1 | 301 | 67 | 364 | 1.78e-50 | 171 |
MS.gene71159.t1 | MTR_5g070088 | 40.357 | 280 | 150 | 9 | 25 | 297 | 112 | 381 | 2.42e-50 | 171 |
MS.gene71159.t1 | MTR_4g023380 | 36.697 | 327 | 149 | 9 | 1 | 300 | 81 | 376 | 3.18e-50 | 171 |
MS.gene71159.t1 | MTR_4g023090 | 38.050 | 318 | 162 | 10 | 1 | 299 | 81 | 382 | 3.85e-50 | 170 |
MS.gene71159.t1 | MTR_1g055135 | 39.000 | 300 | 168 | 8 | 8 | 301 | 85 | 375 | 2.06e-48 | 166 |
MS.gene71159.t1 | MTR_4g117780 | 37.785 | 307 | 173 | 8 | 1 | 301 | 73 | 367 | 2.31e-48 | 165 |
MS.gene71159.t1 | MTR_8g032390 | 40.809 | 272 | 141 | 10 | 33 | 297 | 113 | 371 | 3.52e-48 | 165 |
MS.gene71159.t1 | MTR_1g055195 | 36.424 | 302 | 160 | 6 | 9 | 301 | 200 | 478 | 4.23e-48 | 167 |
MS.gene71159.t1 | MTR_4g023120 | 38.782 | 312 | 157 | 9 | 1 | 294 | 68 | 363 | 4.43e-48 | 164 |
MS.gene71159.t1 | MTR_3g034160 | 37.864 | 309 | 175 | 7 | 1 | 300 | 74 | 374 | 9.38e-48 | 164 |
MS.gene71159.t1 | MTR_4g021785 | 36.721 | 305 | 166 | 8 | 1 | 301 | 74 | 355 | 1.37e-47 | 163 |
MS.gene71159.t1 | MTR_5g070080 | 40.072 | 277 | 149 | 9 | 30 | 301 | 122 | 386 | 2.15e-47 | 163 |
MS.gene71159.t1 | MTR_4g023070 | 38.782 | 312 | 157 | 9 | 1 | 294 | 68 | 363 | 5.78e-47 | 162 |
MS.gene71159.t1 | MTR_4g023130 | 39.474 | 266 | 134 | 7 | 33 | 294 | 64 | 306 | 1.37e-46 | 159 |
MS.gene71159.t1 | MTR_4g117750 | 37.338 | 308 | 160 | 10 | 1 | 296 | 68 | 354 | 4.49e-46 | 162 |
MS.gene71159.t1 | MTR_4g117750 | 37.748 | 151 | 72 | 7 | 166 | 299 | 336 | 481 | 1.19e-16 | 80.5 |
MS.gene71159.t1 | MTR_4g117850 | 39.130 | 276 | 145 | 10 | 28 | 294 | 112 | 373 | 1.21e-45 | 158 |
MS.gene71159.t1 | MTR_4g023190 | 38.742 | 302 | 155 | 11 | 1 | 295 | 75 | 353 | 2.86e-45 | 157 |
MS.gene71159.t1 | MTR_4g116330 | 36.709 | 316 | 163 | 9 | 1 | 301 | 87 | 380 | 4.43e-45 | 157 |
MS.gene71159.t1 | MTR_4g118400 | 37.329 | 292 | 134 | 12 | 14 | 295 | 42 | 294 | 2.57e-44 | 153 |
MS.gene71159.t1 | MTR_4g117870 | 36.393 | 305 | 142 | 11 | 1 | 301 | 11 | 267 | 2.86e-43 | 149 |
MS.gene71159.t1 | MTR_4g116320 | 43.519 | 216 | 110 | 8 | 85 | 296 | 46 | 253 | 6.43e-42 | 145 |
MS.gene71159.t1 | MTR_4g023150 | 37.086 | 302 | 161 | 11 | 1 | 295 | 75 | 354 | 1.95e-41 | 147 |
MS.gene71159.t1 | MTR_4g023200 | 36.424 | 302 | 163 | 11 | 1 | 295 | 75 | 354 | 3.40e-41 | 146 |
MS.gene71159.t1 | MTR_1g055175 | 43.000 | 200 | 100 | 7 | 109 | 301 | 9 | 201 | 4.95e-40 | 139 |
MS.gene71159.t1 | MTR_4g023440 | 35.314 | 303 | 140 | 8 | 1 | 301 | 84 | 332 | 6.65e-40 | 142 |
MS.gene71159.t1 | MTR_8g040935 | 40.704 | 199 | 108 | 6 | 109 | 301 | 14 | 208 | 3.82e-39 | 137 |
MS.gene71159.t1 | MTR_4g118370 | 38.039 | 255 | 121 | 8 | 47 | 296 | 33 | 255 | 6.32e-38 | 135 |
MS.gene71159.t1 | MTR_4g121580 | 38.489 | 278 | 130 | 12 | 1 | 270 | 79 | 323 | 1.65e-37 | 137 |
MS.gene71159.t1 | MTR_8g433030 | 38.783 | 263 | 130 | 12 | 53 | 297 | 89 | 338 | 4.22e-37 | 135 |
MS.gene71159.t1 | MTR_6g463430 | 40.909 | 198 | 107 | 5 | 106 | 301 | 13 | 202 | 8.29e-37 | 130 |
MS.gene71159.t1 | MTR_1g055165 | 33.333 | 279 | 118 | 9 | 28 | 301 | 103 | 318 | 6.24e-35 | 129 |
MS.gene71159.t1 | MTR_8g013010 | 41.176 | 204 | 104 | 7 | 1 | 201 | 119 | 309 | 7.00e-32 | 120 |
MS.gene71159.t1 | MTR_4g116330 | 33.228 | 316 | 135 | 9 | 1 | 301 | 87 | 341 | 8.59e-32 | 121 |
MS.gene71159.t1 | MTR_4g117530 | 34.677 | 248 | 111 | 7 | 58 | 301 | 53 | 253 | 4.85e-29 | 111 |
MS.gene71159.t1 | MTR_1g055250 | 37.563 | 197 | 111 | 7 | 81 | 272 | 53 | 242 | 1.57e-28 | 112 |
MS.gene71159.t1 | MTR_5g069120 | 48.800 | 125 | 55 | 4 | 1 | 118 | 56 | 178 | 2.19e-24 | 97.4 |
MS.gene71159.t1 | MTR_4g116340 | 39.286 | 168 | 93 | 5 | 2 | 165 | 85 | 247 | 6.98e-24 | 97.8 |
MS.gene71159.t1 | MTR_4g118360 | 42.149 | 121 | 69 | 1 | 175 | 295 | 1 | 120 | 8.18e-24 | 94.4 |
MS.gene71159.t1 | MTR_4g117430 | 36.095 | 169 | 85 | 5 | 35 | 200 | 3 | 151 | 1.57e-23 | 94.4 |
MS.gene71159.t1 | MTR_4g114700 | 31.061 | 264 | 122 | 8 | 35 | 292 | 9 | 218 | 1.31e-21 | 91.7 |
MS.gene71159.t1 | MTR_5g023000 | 48.454 | 97 | 45 | 2 | 207 | 301 | 6 | 99 | 7.49e-20 | 82.8 |
MS.gene71159.t1 | MTR_7g117720 | 47.059 | 102 | 50 | 3 | 200 | 297 | 172 | 273 | 8.78e-17 | 79.0 |
MS.gene71159.t1 | MTR_7g117720 | 42.857 | 126 | 66 | 4 | 1 | 123 | 56 | 178 | 1.42e-16 | 78.6 |
MS.gene71159.t1 | MTR_4g122860 | 31.034 | 203 | 97 | 9 | 107 | 301 | 153 | 320 | 1.50e-15 | 76.3 |
MS.gene71159.t1 | MTR_5g022420 | 26.460 | 291 | 174 | 15 | 20 | 293 | 110 | 377 | 3.13e-12 | 66.6 |
MS.gene71159.t1 | MTR_1g068835 | 24.609 | 256 | 161 | 11 | 24 | 263 | 83 | 322 | 5.23e-12 | 66.2 |
MS.gene71159.t1 | MTR_3g036290 | 28.070 | 228 | 122 | 11 | 30 | 248 | 117 | 311 | 3.25e-11 | 63.5 |
MS.gene71159.t1 | MTR_8g467140 | 27.143 | 210 | 129 | 8 | 24 | 225 | 120 | 313 | 4.00e-11 | 63.2 |
MS.gene71159.t1 | MTR_3g009310 | 26.984 | 189 | 111 | 8 | 48 | 230 | 160 | 327 | 6.17e-11 | 63.2 |
MS.gene71159.t1 | MTR_3g013740 | 28.507 | 221 | 116 | 11 | 32 | 233 | 149 | 346 | 8.28e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGATTGTTTGGTAGTTT+TGG | 0.197353 | 4.1:-58110514 | MS.gene71159:CDS |
GAATTTGATTTGTTTGTATT+TGG | 0.208660 | 4.1:-58110204 | MS.gene71159:CDS |
CAGCAATTTGTAAAGGATAT+TGG | 0.237693 | 4.1:+58110054 | None:intergenic |
AGCAATTTGTAAAGGATATT+GGG | 0.249473 | 4.1:+58110055 | None:intergenic |
TCATTGTAGGTAAGAGTTAT+AGG | 0.249562 | 4.1:+58110582 | None:intergenic |
TCTTGAATGGGGCTATTCAT+TGG | 0.332825 | 4.1:-58110341 | MS.gene71159:CDS |
GTTGATAATATATTCATTGT+AGG | 0.332965 | 4.1:+58110569 | None:intergenic |
GACTCGGGTCCTTCTTGAAT+GGG | 0.334330 | 4.1:-58110353 | MS.gene71159:CDS |
ATTCCATATGTAGAGGCATT+TGG | 0.336974 | 4.1:+58110641 | None:intergenic |
ACAAATTGCTGTGATATAGT+TGG | 0.370684 | 4.1:-58110042 | MS.gene71159:CDS |
AAGTGGAAACAAATTGAGTT+TGG | 0.375069 | 4.1:-58110417 | MS.gene71159:CDS |
TGTGATATAGTTGGAATTGA+TGG | 0.385757 | 4.1:-58110033 | MS.gene71159:CDS |
TCAATGTATGGACTGTGAAT+AGG | 0.390592 | 4.1:-58110173 | MS.gene71159:CDS |
CAATGTATGGACTGTGAATA+GGG | 0.395265 | 4.1:-58110172 | MS.gene71159:CDS |
GTTCCAAATGCCTCTACATA+TGG | 0.396399 | 4.1:-58110644 | MS.gene71159:CDS |
ACCGTCAACTGATGATTGTT+TGG | 0.400020 | 4.1:-58110523 | MS.gene71159:CDS |
GAATGGGGCTATTCATTGGC+TGG | 0.402811 | 4.1:-58110337 | MS.gene71159:CDS |
TTGGTGGAATTATCAATGTA+TGG | 0.426613 | 4.1:-58110185 | MS.gene71159:CDS |
CAATAACCATCAAAATCATT+TGG | 0.431730 | 4.1:+58110237 | None:intergenic |
TGTACTAGATAGAAACGAAA+TGG | 0.438992 | 4.1:-58109938 | MS.gene71159:CDS |
ATAGGGATACAATTAAGATA+TGG | 0.440562 | 4.1:-58110155 | MS.gene71159:CDS |
TCTCATTGAGAGCTAATAAG+TGG | 0.462649 | 4.1:-58110434 | MS.gene71159:CDS |
TTTGATTTGTTTGTATTTGG+TGG | 0.462886 | 4.1:-58110201 | MS.gene71159:CDS |
GGAATCTGGTTTAACTGACT+TGG | 0.464618 | 4.1:-58110463 | MS.gene71159:CDS |
AGACTCGGGTCCTTCTTGAA+TGG | 0.471841 | 4.1:-58110354 | MS.gene71159:CDS |
AATTAAGATATGGGCGATGC+AGG | 0.474257 | 4.1:-58110145 | MS.gene71159:CDS |
TAGGGATACAATTAAGATAT+GGG | 0.477650 | 4.1:-58110154 | MS.gene71159:CDS |
AGTCTGTGACAAGCGTCATA+TGG | 0.483630 | 4.1:+58110372 | None:intergenic |
ATTGGGGAAAAGTGCAGAGC+AGG | 0.502347 | 4.1:+58110072 | None:intergenic |
AGTAATAATTACATCTCTAT+CGG | 0.511013 | 4.1:+58110299 | None:intergenic |
GCGTCATATGGAGACTTGTA+AGG | 0.515952 | 4.1:+58110384 | None:intergenic |
AATATGCAGTGGATTCATCT+TGG | 0.525537 | 4.1:-58110122 | MS.gene71159:CDS |
ACCAAACAATCATCAGTTGA+CGG | 0.527773 | 4.1:+58110522 | None:intergenic |
AAATTGGAGGTTCATGTAGA+GGG | 0.532856 | 4.1:-58110683 | MS.gene71159:CDS |
TATTTGTTTGTTGACAGCAA+TGG | 0.534444 | 4.1:+58110614 | None:intergenic |
ATCGACTAGATATAAAATCA+AGG | 0.541263 | 4.1:+58110721 | None:intergenic |
TATATCACAGCAATTTGTAA+AGG | 0.545767 | 4.1:+58110047 | None:intergenic |
GATATAGTTGGAATTGATGG+TGG | 0.548435 | 4.1:-58110030 | MS.gene71159:CDS |
GTAAGAGTTATAGGAGACAG+AGG | 0.550272 | 4.1:+58110591 | None:intergenic |
AAAATTGGAGGTTCATGTAG+AGG | 0.551879 | 4.1:-58110684 | MS.gene71159:CDS |
TAAGCTTGATCAGTGGCACT+AGG | 0.560092 | 4.1:+58109886 | None:intergenic |
ATGACGCTTGTCACAGACTC+GGG | 0.560671 | 4.1:-58110368 | MS.gene71159:CDS |
GCAATTTGTAAAGGATATTG+GGG | 0.562747 | 4.1:+58110056 | None:intergenic |
ATATAGTTGGAATTGATGGT+GGG | 0.577281 | 4.1:-58110029 | MS.gene71159:CDS |
TATGGAGACTTGTAAGGCAA+AGG | 0.577299 | 4.1:+58110390 | None:intergenic |
GAGCGATGCATCAAAATCCA+TGG | 0.577889 | 4.1:+58110770 | None:intergenic |
ATAGTTGGAATTGATGGTGG+GGG | 0.586551 | 4.1:-58110027 | MS.gene71159:CDS |
ATGAATAGCCCCATTCAAGA+AGG | 0.587589 | 4.1:+58110344 | None:intergenic |
AAGCAGAGACTCTGTGTACA+CGG | 0.596268 | 4.1:+58109915 | None:intergenic |
TATAGTTGGAATTGATGGTG+GGG | 0.601451 | 4.1:-58110028 | MS.gene71159:CDS |
CTGGTGAAGATTAATGATGA+AGG | 0.609780 | 4.1:-58110000 | MS.gene71159:CDS |
GGCGATGCAGGAATATGCAG+TGG | 0.620349 | 4.1:-58110133 | MS.gene71159:CDS |
TGGATTGATTCCATATGTAG+AGG | 0.622229 | 4.1:+58110634 | None:intergenic |
TATGACGCTTGTCACAGACT+CGG | 0.622517 | 4.1:-58110369 | MS.gene71159:CDS |
TATATTATCAACTTTCTGTG+TGG | 0.626819 | 4.1:-58110558 | MS.gene71159:CDS |
ATCTTCTTAAGCTTGATCAG+TGG | 0.637772 | 4.1:+58109879 | None:intergenic |
ACTCGGGTCCTTCTTGAATG+GGG | 0.674657 | 4.1:-58110352 | MS.gene71159:CDS |
GAGCATCACATATATCATCG+TGG | 0.756792 | 4.1:-58109967 | MS.gene71159:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATTACTTTTGATTCAA+AGG | - | chr4.1:58110367-58110386 | MS.gene71159:CDS | 15.0% |
!! | AGTAATAATTACATCTCTAT+CGG | + | chr4.1:58110357-58110376 | None:intergenic | 20.0% |
!!! | GAATTTGATTTGTTTGTATT+TGG | - | chr4.1:58110449-58110468 | MS.gene71159:CDS | 20.0% |
!!! | GTTGATAATATATTCATTGT+AGG | + | chr4.1:58110087-58110106 | None:intergenic | 20.0% |
!!! | TCTCGATCTTATTTTAAAAT+TGG | - | chr4.1:58109954-58109973 | MS.gene71159:CDS | 20.0% |
! | AGCAATTTGTAAAGGATATT+GGG | + | chr4.1:58110601-58110620 | None:intergenic | 25.0% |
! | ATAGGGATACAATTAAGATA+TGG | - | chr4.1:58110498-58110517 | MS.gene71159:CDS | 25.0% |
! | ATCGACTAGATATAAAATCA+AGG | + | chr4.1:58109935-58109954 | None:intergenic | 25.0% |
! | CAATAACCATCAAAATCATT+TGG | + | chr4.1:58110419-58110438 | None:intergenic | 25.0% |
! | TAGGGATACAATTAAGATAT+GGG | - | chr4.1:58110499-58110518 | MS.gene71159:CDS | 25.0% |
! | TATATCACAGCAATTTGTAA+AGG | + | chr4.1:58110609-58110628 | None:intergenic | 25.0% |
! | TATATTATCAACTTTCTGTG+TGG | - | chr4.1:58110095-58110114 | MS.gene71159:CDS | 25.0% |
!!! | CGATCTTATTTTAAAATTGG+AGG | - | chr4.1:58109957-58109976 | MS.gene71159:CDS | 25.0% |
!!! | TTTGATTTGTTTGTATTTGG+TGG | - | chr4.1:58110452-58110471 | MS.gene71159:CDS | 25.0% |
AAGTGGAAACAAATTGAGTT+TGG | - | chr4.1:58110236-58110255 | MS.gene71159:CDS | 30.0% | |
ACAAATTGCTGTGATATAGT+TGG | - | chr4.1:58110611-58110630 | MS.gene71159:CDS | 30.0% | |
CAGCAATTTGTAAAGGATAT+TGG | + | chr4.1:58110602-58110621 | None:intergenic | 30.0% | |
GCAATTTGTAAAGGATATTG+GGG | + | chr4.1:58110600-58110619 | None:intergenic | 30.0% | |
TCATTGTAGGTAAGAGTTAT+AGG | + | chr4.1:58110074-58110093 | None:intergenic | 30.0% | |
TGTACTAGATAGAAACGAAA+TGG | - | chr4.1:58110715-58110734 | MS.gene71159:CDS | 30.0% | |
TGTGATATAGTTGGAATTGA+TGG | - | chr4.1:58110620-58110639 | MS.gene71159:CDS | 30.0% | |
TTGGTGGAATTATCAATGTA+TGG | - | chr4.1:58110468-58110487 | MS.gene71159:CDS | 30.0% | |
! | ATATAGTTGGAATTGATGGT+GGG | - | chr4.1:58110624-58110643 | MS.gene71159:CDS | 30.0% |
! | CGAATACGATGATAACTTTT+TGG | - | chr4.1:58110169-58110188 | MS.gene71159:CDS | 30.0% |
! | TATTTGTTTGTTGACAGCAA+TGG | + | chr4.1:58110042-58110061 | None:intergenic | 30.0% |
!! | ATGATTGTTTGGTAGTTTTG+GGG | - | chr4.1:58110141-58110160 | MS.gene71159:CDS | 30.0% |
!! | GATGATTGTTTGGTAGTTTT+GGG | - | chr4.1:58110140-58110159 | MS.gene71159:CDS | 30.0% |
!! | TGATGATTGTTTGGTAGTTT+TGG | - | chr4.1:58110139-58110158 | MS.gene71159:CDS | 30.0% |
!!! | GATGATAACTTTTTGGAATC+TGG | - | chr4.1:58110176-58110195 | MS.gene71159:CDS | 30.0% |
AAAATTGGAGGTTCATGTAG+AGG | - | chr4.1:58109969-58109988 | MS.gene71159:CDS | 35.0% | |
AAATTGGAGGTTCATGTAGA+GGG | - | chr4.1:58109970-58109989 | MS.gene71159:CDS | 35.0% | |
ACCAAACAATCATCAGTTGA+CGG | + | chr4.1:58110134-58110153 | None:intergenic | 35.0% | |
CTGGTGAAGATTAATGATGA+AGG | - | chr4.1:58110653-58110672 | MS.gene71159:CDS | 35.0% | |
GATATAGTTGGAATTGATGG+TGG | - | chr4.1:58110623-58110642 | MS.gene71159:CDS | 35.0% | |
TCTCATTGAGAGCTAATAAG+TGG | - | chr4.1:58110219-58110238 | MS.gene71159:CDS | 35.0% | |
! | AATATGCAGTGGATTCATCT+TGG | - | chr4.1:58110531-58110550 | MS.gene71159:CDS | 35.0% |
! | CAATGTATGGACTGTGAATA+GGG | - | chr4.1:58110481-58110500 | MS.gene71159:CDS | 35.0% |
! | GCTTTGCCAAATGATTTTGA+TGG | - | chr4.1:58110410-58110429 | MS.gene71159:CDS | 35.0% |
! | TCAATGTATGGACTGTGAAT+AGG | - | chr4.1:58110480-58110499 | MS.gene71159:CDS | 35.0% |
! | TGGATTGATTCCATATGTAG+AGG | + | chr4.1:58110022-58110041 | None:intergenic | 35.0% |
!! | ATTCCATATGTAGAGGCATT+TGG | + | chr4.1:58110015-58110034 | None:intergenic | 35.0% |
!! | TATAGTTGGAATTGATGGTG+GGG | - | chr4.1:58110625-58110644 | MS.gene71159:CDS | 35.0% |
AATTAAGATATGGGCGATGC+AGG | - | chr4.1:58110508-58110527 | MS.gene71159:CDS | 40.0% | |
ACCGTCAACTGATGATTGTT+TGG | - | chr4.1:58110130-58110149 | MS.gene71159:CDS | 40.0% | |
ATGAATAGCCCCATTCAAGA+AGG | + | chr4.1:58110312-58110331 | None:intergenic | 40.0% | |
GAGCATCACATATATCATCG+TGG | - | chr4.1:58110686-58110705 | MS.gene71159:CDS | 40.0% | |
GTAAGAGTTATAGGAGACAG+AGG | + | chr4.1:58110065-58110084 | None:intergenic | 40.0% | |
GTTCCAAATGCCTCTACATA+TGG | - | chr4.1:58110009-58110028 | MS.gene71159:CDS | 40.0% | |
TATGGAGACTTGTAAGGCAA+AGG | + | chr4.1:58110266-58110285 | None:intergenic | 40.0% | |
TCTTGAATGGGGCTATTCAT+TGG | - | chr4.1:58110312-58110331 | MS.gene71159:CDS | 40.0% | |
! | GGAATCTGGTTTAACTGACT+TGG | - | chr4.1:58110190-58110209 | MS.gene71159:CDS | 40.0% |
!! | ATAGTTGGAATTGATGGTGG+GGG | - | chr4.1:58110626-58110645 | MS.gene71159:CDS | 40.0% |
AAGCAGAGACTCTGTGTACA+CGG | + | chr4.1:58110741-58110760 | None:intergenic | 45.0% | |
AGTCTGTGACAAGCGTCATA+TGG | + | chr4.1:58110284-58110303 | None:intergenic | 45.0% | |
GCGTCATATGGAGACTTGTA+AGG | + | chr4.1:58110272-58110291 | None:intergenic | 45.0% | |
TAAGCTTGATCAGTGGCACT+AGG | + | chr4.1:58110770-58110789 | None:intergenic | 45.0% | |
TATGACGCTTGTCACAGACT+CGG | - | chr4.1:58110284-58110303 | MS.gene71159:CDS | 45.0% | |
ACTCGGGTCCTTCTTGAATG+GGG | - | chr4.1:58110301-58110320 | MS.gene71159:CDS | 50.0% | |
AGACTCGGGTCCTTCTTGAA+TGG | - | chr4.1:58110299-58110318 | MS.gene71159:CDS | 50.0% | |
ATGACGCTTGTCACAGACTC+GGG | - | chr4.1:58110285-58110304 | MS.gene71159:CDS | 50.0% | |
GAATGGGGCTATTCATTGGC+TGG | - | chr4.1:58110316-58110335 | MS.gene71159:CDS | 50.0% | |
GACTCGGGTCCTTCTTGAAT+GGG | - | chr4.1:58110300-58110319 | MS.gene71159:CDS | 50.0% | |
! | ATTGGGGAAAAGTGCAGAGC+AGG | + | chr4.1:58110584-58110603 | None:intergenic | 50.0% |
GGCGATGCAGGAATATGCAG+TGG | - | chr4.1:58110520-58110539 | MS.gene71159:CDS | 55.0% | |
!! | AATTGATGGTGGGGGTGCAC+TGG | - | chr4.1:58110634-58110653 | MS.gene71159:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 58109885 | 58110790 | 58109885 | ID=MS.gene71159 |
chr4.1 | mRNA | 58109885 | 58110790 | 58109885 | ID=MS.gene71159.t1;Parent=MS.gene71159 |
chr4.1 | exon | 58109885 | 58110790 | 58109885 | ID=MS.gene71159.t1.exon1;Parent=MS.gene71159.t1 |
chr4.1 | CDS | 58109885 | 58110790 | 58109885 | ID=cds.MS.gene71159.t1;Parent=MS.gene71159.t1 |
Gene Sequence |
Protein sequence |