AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036558


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036558.t1 MTR_4g117750 84.437 302 40 1 1 295 57 358 5.54e-179 503
MS.gene036558.t1 MTR_4g117750 48.872 133 56 3 174 294 349 481 3.52e-32 124
MS.gene036558.t1 MTR_4g118370 85.950 242 17 1 52 293 33 257 4.09e-150 421
MS.gene036558.t1 MTR_5g097210 62.329 292 107 3 3 293 71 360 7.09e-123 356
MS.gene036558.t1 MTR_1g055135 58.387 310 115 5 1 296 66 375 2.29e-116 340
MS.gene036558.t1 MTR_1g055195 58.633 278 99 3 24 295 210 477 5.85e-107 320
MS.gene036558.t1 MTR_3g103020 57.051 312 113 7 1 296 72 378 5.16e-105 311
MS.gene036558.t1 MTR_3g034180 54.221 308 118 7 8 295 184 488 4.11e-101 305
MS.gene036558.t1 MTR_4g117720 54.870 308 112 10 5 291 71 372 1.90e-97 291
MS.gene036558.t1 MTR_4g117850 55.369 298 120 7 5 292 82 376 3.33e-96 288
MS.gene036558.t1 MTR_3g034130 51.505 299 123 6 4 282 66 362 4.18e-93 280
MS.gene036558.t1 MTR_3g034160 53.571 308 120 7 8 295 70 374 2.86e-92 278
MS.gene036558.t1 MTR_6g060650 54.613 271 109 5 33 295 108 372 1.27e-90 274
MS.gene036558.t1 MTR_4g109270 49.838 309 129 7 4 296 66 364 2.37e-89 270
MS.gene036558.t1 MTR_4g109280 53.177 299 125 8 8 296 66 359 1.00e-87 266
MS.gene036558.t1 MTR_5g070130 50.492 305 129 9 12 296 75 377 2.49e-87 266
MS.gene036558.t1 MTR_4g122850 49.508 305 133 9 8 295 63 363 5.71e-85 260
MS.gene036558.t1 MTR_5g070088 48.287 321 123 9 12 295 71 385 1.68e-81 251
MS.gene036558.t1 MTR_4g094365 48.208 307 134 8 5 295 66 363 1.47e-80 248
MS.gene036558.t1 MTR_5g070080 47.335 319 128 10 12 296 74 386 2.04e-80 248
MS.gene036558.t1 MTR_4g023080 48.185 303 131 9 4 295 66 353 9.72e-80 246
MS.gene036558.t1 MTR_1g055250 64.141 198 64 5 78 272 51 244 2.74e-76 236
MS.gene036558.t1 MTR_4g023070 45.886 316 139 11 6 296 62 370 2.52e-75 235
MS.gene036558.t1 MTR_4g116330 46.865 303 134 9 12 296 87 380 1.42e-74 233
MS.gene036558.t1 MTR_4g118380 47.973 296 114 8 8 269 68 357 2.32e-74 232
MS.gene036558.t1 MTR_4g023120 45.570 316 140 10 6 296 62 370 3.96e-74 232
MS.gene036558.t1 MTR_4g021785 46.026 302 138 9 6 296 68 355 4.22e-73 229
MS.gene036558.t1 MTR_4g023130 47.872 282 126 8 20 295 46 312 4.84e-73 227
MS.gene036558.t1 MTR_4g117870 44.771 306 115 9 5 296 2 267 1.06e-72 224
MS.gene036558.t1 MTR_1g055165 44.444 306 108 7 1 295 63 317 3.82e-72 225
MS.gene036558.t1 MTR_4g117770 47.059 306 134 8 10 296 71 367 1.83e-70 222
MS.gene036558.t1 MTR_4g117810 47.059 306 134 8 10 296 71 367 1.83e-70 222
MS.gene036558.t1 MTR_1g055175 57.513 193 79 3 106 295 8 200 6.63e-70 215
MS.gene036558.t1 MTR_4g023090 42.857 322 141 12 6 295 75 385 6.06e-69 219
MS.gene036558.t1 MTR_4g023190 46.078 306 131 13 6 294 69 357 1.78e-68 217
MS.gene036558.t1 MTR_4g023380 41.692 331 127 11 6 296 75 379 2.21e-68 217
MS.gene036558.t1 MTR_4g023150 45.098 306 135 12 6 294 69 358 6.17e-68 216
MS.gene036558.t1 MTR_4g118400 46.043 278 111 9 23 290 46 294 1.57e-67 213
MS.gene036558.t1 MTR_8g032390 46.441 295 124 11 7 290 98 369 1.28e-66 213
MS.gene036558.t1 MTR_4g117780 46.382 304 135 8 12 296 73 367 1.65e-66 212
MS.gene036558.t1 MTR_4g023200 44.444 306 137 12 6 294 69 358 1.96e-66 211
MS.gene036558.t1 MTR_7g079400 42.667 300 149 7 15 296 43 337 1.69e-64 206
MS.gene036558.t1 MTR_8g433040 43.506 308 139 9 6 296 75 364 2.03e-62 201
MS.gene036558.t1 MTR_8g032380 43.506 308 139 9 6 296 75 364 2.03e-62 201
MS.gene036558.t1 MTR_4g116320 53.604 222 85 7 81 293 43 255 5.82e-61 194
MS.gene036558.t1 MTR_7g079370 42.951 305 150 8 8 290 48 350 1.60e-60 196
MS.gene036558.t1 MTR_4g023440 41.722 302 120 12 4 295 76 331 1.70e-59 193
MS.gene036558.t1 MTR_8g102520 42.230 296 145 8 7 296 47 322 4.65e-59 191
MS.gene036558.t1 MTR_4g116330 41.528 301 114 11 12 296 87 341 2.16e-55 182
MS.gene036558.t1 MTR_8g433030 50.909 220 96 8 76 290 124 336 1.07e-54 181
MS.gene036558.t1 MTR_8g013010 48.585 212 86 6 1 199 108 309 7.11e-51 170
MS.gene036558.t1 MTR_6g463430 47.368 209 99 6 92 296 1 202 2.30e-50 165
MS.gene036558.t1 MTR_8g040935 47.196 214 98 7 92 296 1 208 1.72e-49 163
MS.gene036558.t1 MTR_4g121580 41.060 302 124 15 5 286 72 339 1.23e-47 164
MS.gene036558.t1 MTR_2g048580 36.364 275 146 8 27 296 92 342 1.92e-42 149
MS.gene036558.t1 MTR_7g079420 38.686 274 116 9 39 295 905 1143 7.80e-42 154
MS.gene036558.t1 MTR_4g114700 36.567 268 106 9 33 287 2 218 1.38e-39 139
MS.gene036558.t1 MTR_4g117530 40.444 225 89 7 74 296 72 253 1.72e-39 139
MS.gene036558.t1 MTR_4g117430 49.080 163 67 4 40 199 3 152 7.48e-37 129
MS.gene036558.t1 MTR_4g118360 49.600 125 59 2 175 295 1 125 2.39e-33 119
MS.gene036558.t1 MTR_8g098830 43.210 162 87 3 107 265 35 194 5.12e-32 119
MS.gene036558.t1 MTR_4g116340 43.333 180 76 7 4 165 76 247 4.55e-31 117
MS.gene036558.t1 MTR_7g117720 47.407 135 55 5 8 128 52 184 1.80e-29 113
MS.gene036558.t1 MTR_7g117720 55.172 87 33 3 211 291 186 272 1.23e-18 84.0
MS.gene036558.t1 MTR_5g023000 57.609 92 37 1 206 295 7 98 2.72e-27 102
MS.gene036558.t1 MTR_4g122860 36.598 194 84 6 111 295 156 319 5.29e-27 108
MS.gene036558.t1 MTR_7g079450 44.526 137 73 2 161 296 3 137 9.46e-27 102
MS.gene036558.t1 MTR_1g055200 58.025 81 33 1 36 115 5 85 1.13e-23 93.2
MS.gene036558.t1 MTR_6g034720 41.447 152 71 4 34 178 31 171 3.69e-23 95.1
MS.gene036558.t1 MTR_4g133170 30.508 236 135 9 33 247 86 313 4.53e-23 98.2
MS.gene036558.t1 MTR_1g068875 27.645 293 177 13 11 281 67 346 4.59e-21 92.4
MS.gene036558.t1 MTR_2g026010 29.310 232 143 7 37 247 90 321 5.78e-21 92.4
MS.gene036558.t1 MTR_2g031640 29.924 264 154 12 37 277 92 347 8.82e-20 89.0
MS.gene036558.t1 MTR_1g068835 29.108 213 125 9 33 227 87 291 1.10e-19 88.6
MS.gene036558.t1 MTR_2g021050 27.203 261 144 8 29 263 87 327 2.17e-19 87.8
MS.gene036558.t1 MTR_2g025960 28.736 261 151 11 48 281 26 278 2.34e-19 86.7
MS.gene036558.t1 MTR_2g028160 31.047 277 142 14 37 274 113 379 5.25e-19 87.0
MS.gene036558.t1 MTR_2g426020 27.986 293 166 12 37 293 100 383 1.01e-18 85.9
MS.gene036558.t1 MTR_1g068860 28.111 217 132 7 29 227 83 293 1.08e-18 85.5
MS.gene036558.t1 MTR_2g426070 31.651 218 123 7 49 247 127 337 4.41e-18 84.0
MS.gene036558.t1 MTR_0667s0010 29.021 286 157 14 31 278 88 365 4.98e-18 84.0
MS.gene036558.t1 MTR_2g025420 29.197 274 143 13 53 288 132 392 6.30e-18 83.6
MS.gene036558.t1 MTR_3g083010 27.759 299 172 10 31 290 102 395 8.51e-18 83.2
MS.gene036558.t1 MTR_4g055060 32.579 221 117 12 22 227 118 321 1.03e-17 82.8
MS.gene036558.t1 MTR_1g054725 27.941 272 163 12 37 288 117 375 1.93e-17 82.0
MS.gene036558.t1 MTR_2g021150 26.829 287 184 10 16 288 94 368 1.96e-17 82.0
MS.gene036558.t1 MTR_2g425980 28.479 309 165 13 29 293 87 383 3.20e-17 81.6
MS.gene036558.t1 MTR_2g426090 26.351 296 168 12 31 290 94 375 6.36e-17 80.9
MS.gene036558.t1 MTR_5g069120 39.683 126 58 3 8 115 52 177 7.87e-17 77.0
MS.gene036558.t1 MTR_2g028140 31.336 217 106 11 37 223 114 317 1.04e-16 80.1
MS.gene036558.t1 MTR_2g426060 28.063 253 137 10 31 247 93 336 1.11e-16 80.1
MS.gene036558.t1 MTR_2g024100 26.959 319 182 12 8 282 63 374 1.13e-16 80.1
MS.gene036558.t1 MTR_2g028130 28.269 283 155 11 31 275 100 372 1.26e-16 79.7
MS.gene036558.t1 MTR_2g028110 26.871 294 175 11 31 295 84 366 1.85e-16 79.3
MS.gene036558.t1 MTR_1g055145 58.667 75 29 2 141 214 129 202 4.04e-16 77.0
MS.gene036558.t1 MTR_4g070550 29.091 220 122 8 33 223 97 311 4.69e-16 78.2
MS.gene036558.t1 MTR_2g031720 26.230 305 182 12 26 296 78 373 6.27e-16 77.8
MS.gene036558.t1 MTR_2g078870 28.934 197 119 8 37 228 57 237 8.33e-16 76.6
MS.gene036558.t1 MTR_4g023430 46.341 82 39 2 220 296 141 222 1.56e-15 74.3
MS.gene036558.t1 MTR_5g057790 34.314 204 108 12 37 228 142 331 1.77e-15 76.3
MS.gene036558.t1 MTR_2g031680 26.689 296 181 11 22 291 73 358 2.63e-15 75.9
MS.gene036558.t1 MTR_8g013005 55.172 58 26 0 238 295 1 58 3.50e-15 68.9
MS.gene036558.t1 MTR_1g094210 25.556 270 164 8 34 288 151 398 3.92e-15 75.5
MS.gene036558.t1 MTR_1g094210 26.316 247 146 7 34 265 151 376 4.19e-15 75.5
MS.gene036558.t1 MTR_2g078900 29.648 199 115 9 38 228 133 314 9.27e-15 73.9
MS.gene036558.t1 MTR_3g010970 29.231 195 112 8 35 228 152 321 2.11e-14 73.2
MS.gene036558.t1 MTR_2g021155 29.237 236 131 11 31 252 687 900 3.16e-14 73.6
MS.gene036558.t1 MTR_3g023930 28.788 198 108 8 37 228 129 299 3.16e-14 72.4
MS.gene036558.t1 MTR_5g007610 32.287 223 110 13 32 227 128 336 3.95e-14 72.4
MS.gene036558.t1 MTR_2g021190 27.626 257 166 9 22 264 99 349 4.33e-14 72.4
MS.gene036558.t1 MTR_5g086590 28.440 218 129 10 45 247 8 213 5.96e-14 70.5
MS.gene036558.t1 MTR_3g083660 31.361 169 97 6 60 228 62 211 8.05e-14 70.5
MS.gene036558.t1 MTR_1g055065 29.469 207 124 8 37 228 20 219 1.20e-13 70.1
MS.gene036558.t1 MTR_3g014540 31.220 205 117 10 37 228 123 316 1.25e-13 70.9
MS.gene036558.t1 MTR_0054s0100 25.430 291 168 11 37 287 121 402 1.70e-13 70.5
MS.gene036558.t1 MTR_8g064890 32.567 261 138 16 49 286 136 381 1.80e-13 70.5
MS.gene036558.t1 MTR_5g046300 27.411 197 117 9 37 223 99 279 2.00e-13 70.1
MS.gene036558.t1 MTR_5g046290 27.411 197 117 9 37 223 99 279 2.00e-13 70.1
MS.gene036558.t1 MTR_4g117550 26.937 271 148 9 41 289 127 369 2.05e-13 70.1
MS.gene036558.t1 MTR_3g011060 33.014 209 106 12 33 228 138 325 2.29e-13 70.1
MS.gene036558.t1 MTR_3g014570 31.707 205 114 9 37 227 123 315 2.87e-13 69.7
MS.gene036558.t1 MTR_0054s0090 25.357 280 163 10 51 293 136 406 2.98e-13 69.7
MS.gene036558.t1 MTR_8g099460 25.172 290 162 10 31 282 87 359 3.92e-13 69.7
MS.gene036558.t1 MTR_3g010920 26.500 200 117 7 33 228 138 311 6.90e-13 68.6
MS.gene036558.t1 MTR_3g010870 28.986 207 115 9 34 228 130 316 1.05e-12 68.2
MS.gene036558.t1 MTR_2g021770 26.582 316 182 14 14 289 98 403 1.15e-12 68.2
MS.gene036558.t1 MTR_5g057690 30.693 202 112 9 35 228 140 321 1.57e-12 67.8
MS.gene036558.t1 MTR_3g007330 29.907 214 118 9 37 234 137 334 1.57e-12 67.8
MS.gene036558.t1 MTR_1g058190 28.804 184 114 6 57 228 127 305 1.82e-12 67.4
MS.gene036558.t1 MTR_5g011200 30.882 204 115 9 37 228 117 306 2.32e-12 67.0
MS.gene036558.t1 MTR_3g011120 30.263 228 129 12 45 255 130 344 2.77e-12 67.0
MS.gene036558.t1 MTR_8g046200 28.992 238 112 10 37 227 129 356 3.22e-12 67.0
MS.gene036558.t1 MTR_8g467670 27.885 208 116 9 35 223 118 310 3.58e-12 66.6
MS.gene036558.t1 MTR_6g065980 28.421 190 116 8 37 223 110 282 3.92e-12 66.2
MS.gene036558.t1 MTR_5g059430 25.965 285 174 13 37 293 151 426 4.49e-12 66.2
MS.gene036558.t1 MTR_3g007430 28.111 217 130 9 26 227 123 328 4.82e-12 66.2
MS.gene036558.t1 MTR_5g097330 27.941 272 164 12 41 289 137 399 5.12e-12 66.2
MS.gene036558.t1 MTR_5g057710 31.373 204 114 11 37 228 142 331 5.57e-12 66.2
MS.gene036558.t1 MTR_5g043605 28.829 222 123 12 48 250 92 297 6.29e-12 65.9
MS.gene036558.t1 MTR_2g029990 25.660 265 176 9 35 288 148 402 8.07e-12 65.5
MS.gene036558.t1 MTR_3g006640 28.774 212 121 8 37 228 20 221 8.67e-12 64.7
MS.gene036558.t1 MTR_2g066200 29.630 216 119 9 53 246 137 341 9.57e-12 65.5
MS.gene036558.t1 MTR_2g022000 28.279 244 126 11 45 246 134 370 1.15e-11 65.1
MS.gene036558.t1 MTR_3g010590 27.638 199 115 9 35 228 137 311 1.22e-11 65.1
MS.gene036558.t1 MTR_5g097680 29.858 211 108 10 53 227 159 365 1.33e-11 65.1
MS.gene036558.t1 MTR_1g056710 30.732 205 117 9 37 228 127 319 1.46e-11 64.7
MS.gene036558.t1 MTR_8g464770 27.778 288 172 14 26 290 103 377 1.58e-11 64.7
MS.gene036558.t1 MTR_8g063440 26.054 261 159 11 51 289 131 379 1.92e-11 64.3
MS.gene036558.t1 MTR_2g043410 27.129 317 173 14 15 288 115 416 1.92e-11 64.3
MS.gene036558.t1 MTR_1g097490 24.046 262 180 7 34 288 141 390 2.33e-11 64.3
MS.gene036558.t1 MTR_4g122840 37.121 132 47 5 167 295 165 263 2.60e-11 63.2
MS.gene036558.t1 MTR_3g072470 29.339 242 127 12 10 225 106 329 3.41e-11 63.9
MS.gene036558.t1 MTR_3g024130 28.571 210 118 10 34 227 57 250 4.42e-11 63.2
MS.gene036558.t1 MTR_1g053510 26.645 304 152 14 37 290 121 403 4.47e-11 63.5
MS.gene036558.t1 MTR_4g108820 26.991 226 146 8 14 234 84 295 4.77e-11 62.8
MS.gene036558.t1 MTR_4g130330 25.000 240 136 9 53 261 125 351 5.66e-11 63.2
MS.gene036558.t1 MTR_4g031770 28.061 196 132 5 37 228 100 290 5.87e-11 62.8
MS.gene036558.t1 MTR_3g030250 25.792 221 131 9 15 228 117 311 6.01e-11 62.8
MS.gene036558.t1 MTR_6g007150 27.941 204 127 8 38 229 72 267 6.84e-11 62.4
MS.gene036558.t1 MTR_2g104340 25.000 304 183 13 22 289 98 392 7.05e-11 62.8
MS.gene036558.t1 MTR_5g092850 27.692 260 139 13 32 250 106 357 7.52e-11 62.8
MS.gene036558.t1 MTR_6g478230 24.188 277 156 10 47 287 143 401 7.57e-11 62.8
MS.gene036558.t1 MTR_5g046260 28.649 185 99 10 43 223 94 249 8.17e-11 62.0
MS.gene036558.t1 MTR_4g023100 52.727 55 24 2 241 295 66 118 8.71e-11 58.9
MS.gene036558.t1 MTR_6g053260 28.641 206 123 7 34 228 433 625 9.93e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036558.t1 AT3G06240 28.947 304 161 14 18 291 143 421 8.95e-20 89.4
MS.gene036558.t1 AT4G22390 23.214 224 145 9 43 242 98 318 5.68e-11 63.2
MS.gene036558.t1 AT4G22390 23.214 224 145 9 43 242 98 318 6.13e-11 63.2

Find 75 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAGGATTTCTCAGTTTA+TGG 0.140685 8.3:+8131329 MS.gene036558:CDS
ATTCTAATGATCGTGATTTA+TGG 0.152161 8.3:+8131302 MS.gene036558:CDS
TATTTAAATTTCTCCGGTTT+TGG 0.173697 8.3:+8130965 MS.gene036558:CDS
TTTCTCAGTTTATGGGTTTC+GGG 0.242345 8.3:+8131337 MS.gene036558:CDS
ATTTCTCAGTTTATGGGTTT+CGG 0.261395 8.3:+8131336 MS.gene036558:CDS
GGGATCATGCGGTTGATATA+TGG 0.274318 8.3:+8131359 MS.gene036558:CDS
TAAGTTTGCTCACTGTCATT+GGG 0.306241 8.3:-8131619 None:intergenic
TATTGTTGCCTTTCATTTAA+CGG 0.314412 8.3:+8131234 MS.gene036558:CDS
TTAATATTAAGATCTGAATA+AGG 0.321863 8.3:-8130836 None:intergenic
CGTGATTTATGGGTATTTAG+AGG 0.332628 8.3:+8131313 MS.gene036558:CDS
TTAAGTTTGCTCACTGTCAT+TGG 0.355949 8.3:-8131620 None:intergenic
TCTTCAACGGGGCTATTCAT+TGG 0.371853 8.3:+8131179 MS.gene036558:CDS
TAGAGGATTTCTCAGTTTAT+GGG 0.379392 8.3:+8131330 MS.gene036558:CDS
AAATTTAAATAATAATCATT+AGG 0.380093 8.3:-8130953 None:intergenic
TTCTAATGATCGTGATTTAT+GGG 0.390140 8.3:+8131303 MS.gene036558:CDS
TGGTAGACTCGTTCTTCAAC+GGG 0.393166 8.3:+8131167 MS.gene036558:CDS
ATTAAGATCTGAATAAGGTT+GGG 0.401705 8.3:-8130831 None:intergenic
GTTGCATCAAATGGCTGTAT+TGG 0.407918 8.3:+8131490 MS.gene036558:CDS
AGGTATGGAATAACATCAAT+AGG 0.416709 8.3:-8131433 None:intergenic
GAAACGACCTTACTACAATA+AGG 0.419998 8.3:-8131130 None:intergenic
GGCAATATTGTTGCATCAAA+TGG 0.423457 8.3:+8131481 MS.gene036558:CDS
ACTCTGTATACAAAGTCATT+TGG 0.424137 8.3:-8131582 None:intergenic
GAATCATTGTCAATATCATC+TGG 0.424654 8.3:-8131283 None:intergenic
GATAGCATGTCATCTGAGTT+TGG 0.425188 8.3:-8131043 None:intergenic
GGATCATGCGGTTGATATAT+GGG 0.427140 8.3:+8131360 MS.gene036558:CDS
GATTATTATTTAAATTTCTC+CGG 0.427925 8.3:+8130959 MS.gene036558:CDS
TATTAAGATCTGAATAAGGT+TGG 0.434280 8.3:-8130832 None:intergenic
TGCCTTTCATTTAACGGAAA+GGG 0.435719 8.3:+8131240 MS.gene036558:CDS
AATACGGAGTGCATTCATCT+TGG 0.435954 8.3:+8131392 MS.gene036558:CDS
CAACGGGGCTATTCATTGGT+TGG 0.441989 8.3:+8131183 MS.gene036558:CDS
CCATTGGCCTTATTGTAGTA+AGG 0.461493 8.3:+8131123 MS.gene036558:CDS
CTCCTATTGTGAAGATGCAC+CGG 0.482349 8.3:+8131555 MS.gene036558:CDS
TCCCGGTGCATCTTCACAAT+AGG 0.484145 8.3:-8131557 None:intergenic
TGACGGATCATACCCAAAAC+CGG 0.487754 8.3:-8130978 None:intergenic
AGGTATTTGTTTCTGAGCTC+CGG 0.488475 8.3:-8130924 None:intergenic
TGTTTCTGAGCTCCGGTGGA+TGG 0.488540 8.3:-8130917 None:intergenic
GTCTACCATGGGATAATAAG+AGG 0.488611 8.3:-8131152 None:intergenic
TACAAAGTCATTTGGAATCC+CGG 0.499164 8.3:-8131574 None:intergenic
CTCCCTTTCCGTTAAATGAA+AGG 0.499639 8.3:-8131242 None:intergenic
GTCAAAAGATGATTACTTGG+TGG 0.513191 8.3:+8130997 MS.gene036558:CDS
ATGGTAGACTCGTTCTTCAA+CGG 0.514560 8.3:+8131166 MS.gene036558:CDS
GTGCTTCAAACATCTACCTA+TGG 0.527518 8.3:+8130891 MS.gene036558:CDS
TTTAAATAATAATCATTAGG+AGG 0.528009 8.3:-8130950 None:intergenic
CGTTTCCTCTTATTATCCCA+TGG 0.529752 8.3:+8131147 MS.gene036558:CDS
TCCGTCAAAAGATGATTACT+TGG 0.531304 8.3:+8130994 MS.gene036558:CDS
TTGCCTTTCATTTAACGGAA+AGG 0.535974 8.3:+8131239 MS.gene036558:CDS
TAATGTGTGGAAGGAAATTG+TGG 0.535979 8.3:+8131093 MS.gene036558:CDS
TTGTATAGCATATAGGGGAA+AGG 0.540123 8.3:-8131453 None:intergenic
TTCTCAGTTTATGGGTTTCG+GGG 0.541239 8.3:+8131338 MS.gene036558:CDS
TTAAGATCTGAATAAGGTTG+GGG 0.543906 8.3:-8130830 None:intergenic
AATATTAAAGCTTCATGCAG+AGG 0.549301 8.3:+8130851 MS.gene036558:CDS
ATATGGGTGATGGAAGAATA+CGG 0.552348 8.3:+8131376 MS.gene036558:CDS
TAATAATCATTAGGAGGCAA+AGG 0.552914 8.3:-8130944 None:intergenic
CTTACTACAATAAGGCCAAT+GGG 0.558158 8.3:-8131122 None:intergenic
CCTTACTACAATAAGGCCAA+TGG 0.561063 8.3:-8131123 None:intergenic
ATTAAGAGCTAATGTGTGGA+AGG 0.563079 8.3:+8131084 MS.gene036558:CDS
AAGTTTGCTCACTGTCATTG+GGG 0.566685 8.3:-8131618 None:intergenic
TAGCATATAGGGGAAAGGTA+TGG 0.569968 8.3:-8131448 None:intergenic
TGCGGTTGATATATGGGTGA+TGG 0.581161 8.3:+8131366 MS.gene036558:CDS
AATCATTGTCAATATCATCT+GGG 0.593681 8.3:-8131282 None:intergenic
TACCTATGGAATCCATCCAC+CGG 0.596523 8.3:+8130905 MS.gene036558:CDS
AAATTGTGGGTACTACCCAT+TGG 0.598868 8.3:+8131107 MS.gene036558:CDS
TCCTATTGTGAAGATGCACC+GGG 0.610791 8.3:+8131556 MS.gene036558:CDS
ATCAAATGGCTGTATTGGAC+TGG 0.615482 8.3:+8131495 MS.gene036558:CDS
TATTTGTTTCTGAGCTCCGG+TGG 0.615695 8.3:-8130921 None:intergenic
GTTGAAGAACGAGTCTACCA+TGG 0.621164 8.3:-8131164 None:intergenic
TTGTCAATATCATCTGGGAG+AGG 0.622358 8.3:-8131277 None:intergenic
CTGGTGAAATATAATGACAA+AGG 0.628366 8.3:+8131514 MS.gene036558:CDS
TCTCAGTTTATGGGTTTCGG+GGG 0.639556 8.3:+8131339 MS.gene036558:CDS
TCTCATTAAGAGCTAATGTG+TGG 0.640834 8.3:+8131080 MS.gene036558:CDS
TTGAAGAACGAGTCTACCAT+GGG 0.641041 8.3:-8131163 None:intergenic
CTCCGGTGGATGGATTCCAT+AGG 0.643424 8.3:-8130907 None:intergenic
AGATGACATGCTATCTCACA+TGG 0.656192 8.3:+8131051 MS.gene036558:CDS
AATGTGTGGAAGGAAATTGT+GGG 0.721472 8.3:+8131094 MS.gene036558:CDS
GGTAGACTCGTTCTTCAACG+GGG 0.728525 8.3:+8131168 MS.gene036558:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTATTATTTAAATTTCTC+CGG + chr8.3:8130959-8130978 MS.gene036558:CDS 15.0%
!! TTAATATTAAGATCTGAATA+AGG - chr8.3:8130839-8130858 None:intergenic 15.0%
!! TTTAAATAATAATCATTAGG+AGG - chr8.3:8130953-8130972 None:intergenic 15.0%
! AATCATTGTCAATATCATCT+GGG - chr8.3:8131285-8131304 None:intergenic 25.0%
! ATTAAGATCTGAATAAGGTT+GGG - chr8.3:8130834-8130853 None:intergenic 25.0%
! ATTCTAATGATCGTGATTTA+TGG + chr8.3:8131302-8131321 MS.gene036558:CDS 25.0%
! TATTAAGATCTGAATAAGGT+TGG - chr8.3:8130835-8130854 None:intergenic 25.0%
! TATTGTTGCCTTTCATTTAA+CGG + chr8.3:8131234-8131253 MS.gene036558:CDS 25.0%
! TTCTAATGATCGTGATTTAT+GGG + chr8.3:8131303-8131322 MS.gene036558:CDS 25.0%
!! ACTTTTTGTATAGCATATAG+GGG - chr8.3:8131461-8131480 None:intergenic 25.0%
!! ATTTAAATTTCTCCGGTTTT+GGG + chr8.3:8130966-8130985 MS.gene036558:CDS 25.0%
!! TATTTAAATTTCTCCGGTTT+TGG + chr8.3:8130965-8130984 MS.gene036558:CDS 25.0%
!!! CACTTTTTGTATAGCATATA+GGG - chr8.3:8131462-8131481 None:intergenic 25.0%
AATATTAAAGCTTCATGCAG+AGG + chr8.3:8130851-8130870 MS.gene036558:CDS 30.0%
ACTCTGTATACAAAGTCATT+TGG - chr8.3:8131585-8131604 None:intergenic 30.0%
AGGTATGGAATAACATCAAT+AGG - chr8.3:8131436-8131455 None:intergenic 30.0%
ATTTCTCAGTTTATGGGTTT+CGG + chr8.3:8131336-8131355 MS.gene036558:CDS 30.0%
CCTATATGCTATACAAAAAG+TGG + chr8.3:8131460-8131479 MS.gene036558:CDS 30.0%
CTGGTGAAATATAATGACAA+AGG + chr8.3:8131514-8131533 MS.gene036558:CDS 30.0%
GAATCATTGTCAATATCATC+TGG - chr8.3:8131286-8131305 None:intergenic 30.0%
TAATAATCATTAGGAGGCAA+AGG - chr8.3:8130947-8130966 None:intergenic 30.0%
TAGAGGATTTCTCAGTTTAT+GGG + chr8.3:8131330-8131349 MS.gene036558:CDS 30.0%
TTAAGATCTGAATAAGGTTG+GGG - chr8.3:8130833-8130852 None:intergenic 30.0%
TTAGAGGATTTCTCAGTTTA+TGG + chr8.3:8131329-8131348 MS.gene036558:CDS 30.0%
! ACCAAGTAATCATCTTTTGA+CGG - chr8.3:8130998-8131017 None:intergenic 30.0%
!!! CCACTTTTTGTATAGCATAT+AGG - chr8.3:8131463-8131482 None:intergenic 30.0%
AATGTGTGGAAGGAAATTGT+GGG + chr8.3:8131094-8131113 MS.gene036558:CDS 35.0%
ATTAAGAGCTAATGTGTGGA+AGG + chr8.3:8131084-8131103 MS.gene036558:CDS 35.0%
CGTGATTTATGGGTATTTAG+AGG + chr8.3:8131313-8131332 MS.gene036558:CDS 35.0%
CTTACTACAATAAGGCCAAT+GGG - chr8.3:8131125-8131144 None:intergenic 35.0%
GAAACGACCTTACTACAATA+AGG - chr8.3:8131133-8131152 None:intergenic 35.0%
GGCAATATTGTTGCATCAAA+TGG + chr8.3:8131481-8131500 MS.gene036558:CDS 35.0%
GTCAAAAGATGATTACTTGG+TGG + chr8.3:8130997-8131016 MS.gene036558:CDS 35.0%
TAATGTGTGGAAGGAAATTG+TGG + chr8.3:8131093-8131112 MS.gene036558:CDS 35.0%
TCCGTCAAAAGATGATTACT+TGG + chr8.3:8130994-8131013 MS.gene036558:CDS 35.0%
TCTCATTAAGAGCTAATGTG+TGG + chr8.3:8131080-8131099 MS.gene036558:CDS 35.0%
TGCCTTTCATTTAACGGAAA+GGG + chr8.3:8131240-8131259 MS.gene036558:CDS 35.0%
TTGCCTTTCATTTAACGGAA+AGG + chr8.3:8131239-8131258 MS.gene036558:CDS 35.0%
TTGTATAGCATATAGGGGAA+AGG - chr8.3:8131456-8131475 None:intergenic 35.0%
TTTCTCAGTTTATGGGTTTC+GGG + chr8.3:8131337-8131356 MS.gene036558:CDS 35.0%
! TAAGTTTGCTCACTGTCATT+GGG - chr8.3:8131622-8131641 None:intergenic 35.0%
! TACAAAGTCATTTGGAATCC+CGG - chr8.3:8131577-8131596 None:intergenic 35.0%
! TTAAGTTTGCTCACTGTCAT+TGG - chr8.3:8131623-8131642 None:intergenic 35.0%
!! ATATGGGTGATGGAAGAATA+CGG + chr8.3:8131376-8131395 MS.gene036558:CDS 35.0%
AAATTGTGGGTACTACCCAT+TGG + chr8.3:8131107-8131126 MS.gene036558:CDS 40.0%
AATACGGAGTGCATTCATCT+TGG + chr8.3:8131392-8131411 MS.gene036558:CDS 40.0%
AGATGACATGCTATCTCACA+TGG + chr8.3:8131051-8131070 MS.gene036558:CDS 40.0%
ATCAAATGGCTGTATTGGAC+TGG + chr8.3:8131495-8131514 MS.gene036558:CDS 40.0%
ATGGTAGACTCGTTCTTCAA+CGG + chr8.3:8131166-8131185 MS.gene036558:CDS 40.0%
CCTTACTACAATAAGGCCAA+TGG - chr8.3:8131126-8131145 None:intergenic 40.0%
CGTTTCCTCTTATTATCCCA+TGG + chr8.3:8131147-8131166 MS.gene036558:CDS 40.0%
CTCCCTTTCCGTTAAATGAA+AGG - chr8.3:8131245-8131264 None:intergenic 40.0%
GATAGCATGTCATCTGAGTT+TGG - chr8.3:8131046-8131065 None:intergenic 40.0%
GTCTACCATGGGATAATAAG+AGG - chr8.3:8131155-8131174 None:intergenic 40.0%
GTGCTTCAAACATCTACCTA+TGG + chr8.3:8130891-8130910 MS.gene036558:CDS 40.0%
GTTGCATCAAATGGCTGTAT+TGG + chr8.3:8131490-8131509 MS.gene036558:CDS 40.0%
TAGCATATAGGGGAAAGGTA+TGG - chr8.3:8131451-8131470 None:intergenic 40.0%
TTCTCAGTTTATGGGTTTCG+GGG + chr8.3:8131338-8131357 MS.gene036558:CDS 40.0%
TTGAAGAACGAGTCTACCAT+GGG - chr8.3:8131166-8131185 None:intergenic 40.0%
TTGTCAATATCATCTGGGAG+AGG - chr8.3:8131280-8131299 None:intergenic 40.0%
! AAGTTTGCTCACTGTCATTG+GGG - chr8.3:8131621-8131640 None:intergenic 40.0%
! GGATCATGCGGTTGATATAT+GGG + chr8.3:8131360-8131379 MS.gene036558:CDS 40.0%
!! AGGTATTTGTTTCTGAGCTC+CGG - chr8.3:8130927-8130946 None:intergenic 40.0%
!! CCATTGGCCTTATTGTAGTA+AGG + chr8.3:8131123-8131142 MS.gene036558:CDS 40.0%
CTCCTATTGTGAAGATGCAC+CGG + chr8.3:8131555-8131574 MS.gene036558:CDS 45.0%
GTTGAAGAACGAGTCTACCA+TGG - chr8.3:8131167-8131186 None:intergenic 45.0%
TACCTATGGAATCCATCCAC+CGG + chr8.3:8130905-8130924 MS.gene036558:CDS 45.0%
TCCTATTGTGAAGATGCACC+GGG + chr8.3:8131556-8131575 MS.gene036558:CDS 45.0%
TCTCAGTTTATGGGTTTCGG+GGG + chr8.3:8131339-8131358 MS.gene036558:CDS 45.0%
TCTTCAACGGGGCTATTCAT+TGG + chr8.3:8131179-8131198 MS.gene036558:CDS 45.0%
TGGTAGACTCGTTCTTCAAC+GGG + chr8.3:8131167-8131186 MS.gene036558:CDS 45.0%
! GGGATCATGCGGTTGATATA+TGG + chr8.3:8131359-8131378 MS.gene036558:CDS 45.0%
! TGACGGATCATACCCAAAAC+CGG - chr8.3:8130981-8131000 None:intergenic 45.0%
! TGCGGTTGATATATGGGTGA+TGG + chr8.3:8131366-8131385 MS.gene036558:CDS 45.0%
!! TATTTGTTTCTGAGCTCCGG+TGG - chr8.3:8130924-8130943 None:intergenic 45.0%
!! AAATTTAAATAATAATCATT+AGG - chr8.3:8130956-8130975 None:intergenic 5.0%
CAACGGGGCTATTCATTGGT+TGG + chr8.3:8131183-8131202 MS.gene036558:CDS 50.0%
GGTAGACTCGTTCTTCAACG+GGG + chr8.3:8131168-8131187 MS.gene036558:CDS 50.0%
TCCCGGTGCATCTTCACAAT+AGG - chr8.3:8131560-8131579 None:intergenic 50.0%
ATGGGTTTCGGGGGATCATG+CGG + chr8.3:8131348-8131367 MS.gene036558:CDS 55.0%
! CTCCGGTGGATGGATTCCAT+AGG - chr8.3:8130910-8130929 None:intergenic 55.0%
! TGTTTCTGAGCTCCGGTGGA+TGG - chr8.3:8130920-8130939 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 8130752 8131642 8130752 ID=MS.gene036558
chr8.3 mRNA 8130752 8131642 8130752 ID=MS.gene036558.t1;Parent=MS.gene036558
chr8.3 exon 8130752 8131642 8130752 ID=MS.gene036558.t1.exon1;Parent=MS.gene036558.t1
chr8.3 CDS 8130752 8131642 8130752 ID=cds.MS.gene036558.t1;Parent=MS.gene036558.t1
Gene Sequence

>MS.gene036558

ATGTTCAGAACATCAACTTCTGAAATTCGTTATATAGATTTAGAAGCATCGATTCACGATGATTCTGCTTTTATGCTTCCCCAACCTTATTCAGATCTTAATATTAAAGCTTCATGCAGAGGCTTTATTGTTTTCTACTGTGCTTCAAACATCTACCTATGGAATCCATCCACCGGAGCTCAGAAACAAATACCTTTGCCTCCTAATGATTATTATTTAAATTTCTCCGGTTTTGGGTATGATCCGTCAAAAGATGATTACTTGGTGGTTTCAGTATCGTATGATAGTATTCCAAACTCAGATGACATGCTATCTCACATGGAGATTTTCTCATTAAGAGCTAATGTGTGGAAGGAAATTGTGGGTACTACCCATTGGCCTTATTGTAGTAAGGTCGTTTCCTCTTATTATCCCATGGTAGACTCGTTCTTCAACGGGGCTATTCATTGGTTGGCTTTTCGTCATGACATATGTGTTTATGTTATTGTTGCCTTTCATTTAACGGAAAGGGAGCTTCTATTGATACCTCTCCCAGATGATATTGACAATGATTCTAATGATCGTGATTTATGGGTATTTAGAGGATTTCTCAGTTTATGGGTTTCGGGGGATCATGCGGTTGATATATGGGTGATGGAAGAATACGGAGTGCATTCATCTTGGATTAAAACTCTTGTGCTTCCTATTGATGTTATTCCATACCTTTCCCCTATATGCTATACAAAAAGTGGCAATATTGTTGCATCAAATGGCTGTATTGGACTGGTGAAATATAATGACAAAGGAGAGTTTCTAGAGCATAACTCCTATTGTGAAGATGCACCGGGATTCCAAATGACTTTGTATACAGAGTCTCTGCTTTCACTCCCCAATGACAGTGAGCAAACTTAA

Protein sequence

>MS.gene036558.t1

MFRTSTSEIRYIDLEASIHDDSAFMLPQPYSDLNIKASCRGFIVFYCASNIYLWNPSTGAQKQIPLPPNDYYLNFSGFGYDPSKDDYLVVSVSYDSIPNSDDMLSHMEIFSLRANVWKEIVGTTHWPYCSKVVSSYYPMVDSFFNGAIHWLAFRHDICVYVIVAFHLTERELLLIPLPDDIDNDSNDRDLWVFRGFLSLWVSGDHAVDIWVMEEYGVHSSWIKTLVLPIDVIPYLSPICYTKSGNIVASNGCIGLVKYNDKGEFLEHNSYCEDAPGFQMTLYTESLLSLPNDSEQT