AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27022

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27022.t1 MTR_1g023400 72.853 361 85 5 1 357 1 352 0.0 517
MS.gene27022.t1 MTR_1g022200 64.439 374 118 7 1 365 13 380 1.07e-160 455
MS.gene27022.t1 MTR_1g023430 92.105 152 12 0 214 365 29 180 2.58e-102 300
MS.gene27022.t1 MTR_1g009110 48.000 375 169 12 2 358 13 379 1.61e-98 297
MS.gene27022.t1 MTR_4g080200 45.430 372 165 12 1 357 1 349 5.00e-93 282
MS.gene27022.t1 MTR_1g037540 42.615 413 162 20 3 357 5 400 1.00e-71 229
MS.gene27022.t1 MTR_1g022105 39.773 352 148 8 2 339 20 321 1.42e-71 226
MS.gene27022.t1 MTR_1g024125 69.492 118 32 2 230 343 38 155 1.51e-52 171
MS.gene27022.t1 MTR_1g008000 33.871 310 138 16 63 358 13 269 9.31e-32 120
MS.gene27022.t1 MTR_7g016930 28.269 283 159 11 6 266 19 279 1.07e-15 77.8
MS.gene27022.t1 MTR_8g093280 47.573 103 44 4 3 101 7 103 1.51e-15 72.4
MS.gene27022.t1 MTR_6g080680 24.781 343 203 13 6 310 22 347 2.47e-15 77.0
MS.gene27022.t1 MTR_5g027370 22.959 392 237 15 9 356 35 405 5.60e-15 76.3
MS.gene27022.t1 MTR_8g046310 28.076 317 180 16 6 295 19 314 5.85e-15 75.9
MS.gene27022.t1 MTR_5g027330 23.214 392 236 16 9 356 46 416 9.49e-15 75.5
MS.gene27022.t1 MTR_7g079640 25.272 368 210 15 6 337 16 354 1.36e-13 71.6
MS.gene27022.t1 MTR_8g012090 24.340 341 180 15 6 310 19 317 1.77e-13 70.9
MS.gene27022.t1 MTR_6g053260 26.019 319 179 18 2 293 336 624 2.07e-13 72.0
MS.gene27022.t1 MTR_8g073550 32.500 200 106 11 3 187 30 215 3.05e-13 68.9
MS.gene27022.t1 MTR_5g057790 27.532 316 167 17 6 293 49 330 3.48e-13 70.5
MS.gene27022.t1 MTR_3g058480 27.468 233 142 9 2 217 38 260 5.27e-13 69.7
MS.gene27022.t1 MTR_2g021950 24.786 351 206 17 6 313 19 354 8.71e-13 69.3
MS.gene27022.t1 MTR_5g097220 22.967 418 236 17 2 357 12 405 8.98e-13 69.3
MS.gene27022.t1 MTR_3g006670 32.075 212 98 10 3 188 49 240 9.07e-13 69.3
MS.gene27022.t1 MTR_5g057710 26.708 322 184 15 6 304 49 341 1.08e-12 68.9
MS.gene27022.t1 MTR_6g027910 24.619 394 233 20 3 357 9 377 1.29e-12 68.9
MS.gene27022.t1 MTR_3g011100 24.661 369 214 20 2 331 234 577 1.83e-12 68.9
MS.gene27022.t1 MTR_4g027370 23.557 433 234 16 2 356 29 442 2.05e-12 68.6
MS.gene27022.t1 MTR_3g030250 26.452 310 169 14 3 291 37 308 3.16e-12 67.8
MS.gene27022.t1 MTR_2g021150 25.843 356 207 18 6 331 17 345 3.67e-12 67.4
MS.gene27022.t1 MTR_5g010660 24.219 384 217 15 2 356 33 371 4.30e-12 67.4
MS.gene27022.t1 MTR_2g028140 25.680 331 174 16 6 289 8 313 5.22e-12 67.0
MS.gene27022.t1 MTR_2g034700 23.167 341 213 14 6 319 17 335 5.78e-12 66.6
MS.gene27022.t1 MTR_5g046300 26.266 316 178 16 3 296 4 286 6.12e-12 66.6
MS.gene27022.t1 MTR_5g046290 26.266 316 178 16 3 296 4 286 6.12e-12 66.6
MS.gene27022.t1 MTR_4g033495 25.468 267 157 12 6 245 30 281 6.66e-12 67.0
MS.gene27022.t1 MTR_4g031770 23.151 311 190 10 5 293 6 289 9.17e-12 66.2
MS.gene27022.t1 MTR_0044s0300 26.019 319 173 16 2 293 37 319 1.02e-11 66.2
MS.gene27022.t1 MTR_5g037680 24.355 349 207 15 6 316 11 340 1.25e-11 66.2
MS.gene27022.t1 MTR_2g055970 28.125 192 106 9 11 188 219 392 1.61e-11 65.9
MS.gene27022.t1 MTR_3g009240 23.739 337 203 15 2 313 35 342 1.73e-11 65.5
MS.gene27022.t1 MTR_2g031720 26.059 307 178 15 6 288 9 290 2.68e-11 64.7
MS.gene27022.t1 MTR_3g009310 26.571 350 195 18 3 322 42 359 2.70e-11 64.7
MS.gene27022.t1 MTR_5g057643 32.308 195 98 10 6 183 49 226 2.74e-11 63.9
MS.gene27022.t1 MTR_8g064790 22.552 337 182 11 6 319 18 298 3.22e-11 64.3
MS.gene27022.t1 MTR_3g013740 26.038 265 156 10 6 245 47 296 3.23e-11 64.7
MS.gene27022.t1 MTR_2g426090 26.230 305 191 13 6 288 9 301 3.34e-11 64.7
MS.gene27022.t1 MTR_3g436150 26.332 319 190 15 2 293 31 331 3.50e-11 64.3
MS.gene27022.t1 MTR_5g011200 25.581 258 154 11 6 245 20 257 3.74e-11 64.3
MS.gene27022.t1 MTR_6g048140 22.609 345 205 14 2 313 38 353 3.78e-11 64.3
MS.gene27022.t1 MTR_4g055060 26.800 250 153 10 3 235 30 266 4.04e-11 64.3
MS.gene27022.t1 MTR_3g058440 27.948 229 138 9 3 215 35 252 4.48e-11 63.5
MS.gene27022.t1 MTR_5g097330 24.931 361 208 16 6 319 19 363 4.94e-11 63.9
MS.gene27022.t1 MTR_4g070550 25.253 396 223 20 6 351 8 380 5.64e-11 63.9
MS.gene27022.t1 MTR_4g028510 24.576 354 200 19 6 310 19 354 5.85e-11 63.9
MS.gene27022.t1 MTR_6g007135 23.867 331 207 15 3 309 26 335 6.03e-11 63.5
MS.gene27022.t1 MTR_4g107820 26.238 202 114 9 6 190 39 222 6.05e-11 63.5
MS.gene27022.t1 MTR_4g107780 26.238 202 114 9 6 190 39 222 6.05e-11 63.5
MS.gene27022.t1 MTR_2g426060 25.737 373 210 20 6 345 9 347 6.33e-11 63.9
MS.gene27022.t1 MTR_3g030350 25.714 315 185 16 2 296 34 319 6.33e-11 63.5
MS.gene27022.t1 MTR_4g117550 25.648 347 175 15 6 310 20 325 6.48e-11 63.5
MS.gene27022.t1 MTR_4g107820 25.743 202 115 9 6 190 39 222 7.13e-11 63.5
MS.gene27022.t1 MTR_4g021785 25.895 363 203 19 6 338 12 338 7.39e-11 63.2
MS.gene27022.t1 MTR_4g023080 25.410 366 200 18 6 338 12 337 7.42e-11 63.2
MS.gene27022.t1 MTR_5g070080 26.168 321 184 14 3 289 10 311 7.53e-11 63.5
MS.gene27022.t1 MTR_8g467140 25.079 315 171 17 6 290 35 314 7.59e-11 63.2
MS.gene27022.t1 MTR_4g107780 26.238 202 114 9 6 190 39 222 7.60e-11 63.5
MS.gene27022.t1 MTR_4g117780 27.481 262 137 11 2 242 10 239 9.14e-11 63.2
MS.gene27022.t1 MTR_7g066850 30.172 232 128 11 6 224 26 236 9.15e-11 63.5
MS.gene27022.t1 MTR_8g464770 24.709 344 192 15 6 309 15 331 9.84e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27022.t1 AT3G23260 26.210 248 163 7 2 245 5 236 2.41e-14 73.9

Find 76 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACATCAATTTGAAAT+TGG 0.185453 1.3:-2006019 None:intergenic
AAATACAACACTCTTGTTAA+TGG 0.207720 1.3:+2005627 MS.gene27022:CDS
AGATTTGGAGACTGAGATTT+TGG 0.210631 1.3:+2005038 MS.gene27022:CDS
CTCCTGTCGTCTTGCACATT+TGG 0.210715 1.3:+2005841 MS.gene27022:CDS
ATAATCTAAGTACTAAATTA+TGG 0.229738 1.3:+2005550 MS.gene27022:CDS
TTGAGCAAGAAGATGAATTT+AGG 0.236481 1.3:+2005012 None:intergenic
ACATGAAAGAAGGGTTAAAT+AGG 0.250391 1.3:-2005205 None:intergenic
GATGAATTTAGGAATAGATT+TGG 0.291115 1.3:+2005023 None:intergenic
TCCTGTCGTCTTGCACATTT+GGG 0.292237 1.3:+2005842 MS.gene27022:CDS
CAACTCCTTGGAGGAAAGTT+TGG 0.295354 1.3:+2005954 MS.gene27022:CDS
GTTTGGTGTCCTAGCTATCT+TGG 0.313901 1.3:-2006096 None:intergenic
ACAAGAGTGTTGTATTTAGA+AGG 0.319163 1.3:-2005621 None:intergenic
TCTTCTCTCGCAACTTTCAA+TGG 0.354491 1.3:+2005760 MS.gene27022:CDS
ATATATAATATATCCTAGTT+TGG 0.355918 1.3:-2006113 None:intergenic
TGACGTGTGATGATAGTTAA+AGG 0.366005 1.3:-2005594 None:intergenic
GGCAAAATGAGTTGCCTTGA+TGG 0.369019 1.3:-2005998 None:intergenic
TTGTTAATGGCGTTTATCAT+TGG 0.379442 1.3:+2005640 MS.gene27022:CDS
TATAAAGAATCATGAGACTA+TGG 0.393080 1.3:-2005173 None:intergenic
GACTCATGCATGTATGGTTT+TGG 0.395961 1.3:+2005429 MS.gene27022:CDS
ATGTTTGGCCTTTGGAAGAA+TGG 0.411360 1.3:+2005927 MS.gene27022:CDS
AAAAGCATCAATGACTTTAG+TGG 0.415657 1.3:-2005069 None:intergenic
GACAACGACTCATGCATGTA+TGG 0.419933 1.3:+2005423 MS.gene27022:CDS
AAAGGAGGAGGATGTTGAGT+AGG 0.426239 1.3:-2005576 None:intergenic
TGTTTCGTATGTTTGGCCTT+TGG 0.429988 1.3:+2005919 MS.gene27022:CDS
AAGGAGGAGGATGTTGAGTA+GGG 0.432055 1.3:-2005575 None:intergenic
CTTCTCTCGCAACTTTCAAT+GGG 0.434082 1.3:+2005761 MS.gene27022:CDS
GCTTTGAAGTTGATGTTGTC+GGG 0.441312 1.3:-2005462 None:intergenic
GGAAAATGTTGCCGAGATCA+AGG 0.444536 1.3:+2005782 MS.gene27022:CDS
TGAAAGTTGCGAGAGAAGAT+TGG 0.450386 1.3:-2005756 None:intergenic
AGCTTTGAAGTTGATGTTGT+CGG 0.460508 1.3:-2005463 None:intergenic
CGGTGAACCTCTCTAGTTGT+TGG 0.473040 1.3:-2005378 None:intergenic
GGTGAACCTCTCTAGTTGTT+GGG 0.479668 1.3:-2005377 None:intergenic
TTAGACGTGTTCAAAAGTCT+TGG 0.486723 1.3:+2005091 MS.gene27022:CDS
AAAGACGTTGTTGGAAAAGA+GGG 0.491814 1.3:-2005250 None:intergenic
CCATAAGATTCTATTCGTAC+AGG 0.495381 1.3:-2005276 None:intergenic
CGTCTTGCACATTTGGGCAA+TGG 0.495898 1.3:+2005848 MS.gene27022:CDS
GCCCAAATGTGCAAGACGAC+AGG 0.509229 1.3:-2005843 None:intergenic
CTTTGTCAACCAAGATAGCT+AGG 0.511992 1.3:+2006087 MS.gene27022:CDS
GCAACAAGTTTCACACACTC+AGG 0.511993 1.3:+2005730 MS.gene27022:CDS
AAGAATGGCGATCAACTCCT+TGG 0.512877 1.3:+2005942 MS.gene27022:CDS
CCTGTACGAATAGAATCTTA+TGG 0.516975 1.3:+2005276 MS.gene27022:CDS
TACAGGGTGAAAGACGTTGT+TGG 0.517337 1.3:-2005259 None:intergenic
CATGAAAGAAGGGTTAAATA+GGG 0.524259 1.3:-2005204 None:intergenic
GAAAGACGTTGTTGGAAAAG+AGG 0.525259 1.3:-2005251 None:intergenic
TCTGTCTCAAACGTTTATGT+CGG 0.526472 1.3:+2005316 MS.gene27022:CDS
AGCAAGGGAACCCTTGATCT+CGG 0.527450 1.3:-2005793 None:intergenic
CTACGTTGTCACATGAAAGA+AGG 0.527676 1.3:-2005215 None:intergenic
GTTGACAAAGGAGCTATGCT+TGG 0.537962 1.3:-2006074 None:intergenic
GTGATGATAGTTAAAGGAGG+AGG 0.543019 1.3:-2005588 None:intergenic
GATAGCTAGGACACCAAACT+AGG 0.547828 1.3:+2006100 MS.gene27022:CDS
GTCTCAATGAGTTAATTATG+TGG 0.554609 1.3:+2005352 MS.gene27022:CDS
CAACAAGTTTCACACACTCA+GGG 0.557197 1.3:+2005731 MS.gene27022:CDS
AATGGCGATCAACTCCTTGG+AGG 0.570585 1.3:+2005945 MS.gene27022:CDS
GTTGATCGCCATTCTTCCAA+AGG 0.574741 1.3:-2005935 None:intergenic
AACAAGTTTCACACACTCAG+GGG 0.576953 1.3:+2005732 MS.gene27022:CDS
TCAATTATTGTTCTGTGACA+AGG 0.579061 1.3:+2005499 MS.gene27022:CDS
AAGACGTTGTTGGAAAAGAG+GGG 0.584987 1.3:-2005249 None:intergenic
GAAAATGTTGCCGAGATCAA+GGG 0.586335 1.3:+2005783 MS.gene27022:CDS
GAATCTTATGGTAGTTGCAA+CGG 0.589540 1.3:+2005288 MS.gene27022:CDS
CTAGCTATCTTGGTTGACAA+AGG 0.595687 1.3:-2006086 None:intergenic
ACATGCATGAGTCGTTGTCA+AGG 0.608520 1.3:-2005419 None:intergenic
CTCACATCATATGACCATCA+AGG 0.608996 1.3:+2005984 MS.gene27022:CDS
GGGCAATGGATCAAAGTGGA+TGG 0.609401 1.3:+2005862 MS.gene27022:CDS
CGTGTGATGATAGTTAAAGG+AGG 0.609950 1.3:-2005591 None:intergenic
GATTCTGCACAACATAAGCA+AGG 0.613750 1.3:-2005809 None:intergenic
CATAAGATTCTATTCGTACA+GGG 0.614653 1.3:-2005275 None:intergenic
TCGTTGTCAAGGCAGAGACT+CGG 0.619869 1.3:-2005408 None:intergenic
TGATGGTCATATGATGTGAG+TGG 0.624286 1.3:-2005981 None:intergenic
TACGTTGTCACATGAAAGAA+GGG 0.624496 1.3:-2005214 None:intergenic
GGCAGAGACTCGGAGGAACA+CGG 0.631574 1.3:-2005398 None:intergenic
GTGGAACCCAACAACTAGAG+AGG 0.665628 1.3:+2005371 MS.gene27022:CDS
ATTTGGGCAATGGATCAAAG+TGG 0.667392 1.3:+2005858 MS.gene27022:CDS
ATTCTGCACAACATAAGCAA+GGG 0.674457 1.3:-2005808 None:intergenic
ACAAGTTTCACACACTCAGG+GGG 0.679816 1.3:+2005733 MS.gene27022:CDS
TTGTCAAGGCAGAGACTCGG+AGG 0.701974 1.3:-2005405 None:intergenic
AGGAGGAGGATGTTGAGTAG+GGG 0.705269 1.3:-2005574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCTAAGTACTAAATTA+TGG + chr1.3:2005550-2005569 MS.gene27022:CDS 15.0%
!!! GAAACATTATATTTCATTTT+CGG + chr1.3:2005521-2005540 MS.gene27022:CDS 15.0%
!!! TTGATGATAATGAATATTTT+TGG + chr1.3:2006036-2006055 MS.gene27022:CDS 15.0%
! AAATACAACACTCTTGTTAA+TGG + chr1.3:2005627-2005646 MS.gene27022:CDS 25.0%
! ATACGAAACATTGAAAAAAC+TGG - chr1.3:2005909-2005928 None:intergenic 25.0%
! TACGAAACATTGAAAAAACT+GGG - chr1.3:2005908-2005927 None:intergenic 25.0%
! TATAAAGAATCATGAGACTA+TGG - chr1.3:2005176-2005195 None:intergenic 25.0%
!! CATCAACATCAATTTGAAAT+TGG - chr1.3:2006022-2006041 None:intergenic 25.0%
!! TTTTCAATGTTTCGTATGTT+TGG + chr1.3:2005912-2005931 MS.gene27022:CDS 25.0%
ACATGAAAGAAGGGTTAAAT+AGG - chr1.3:2005208-2005227 None:intergenic 30.0%
CATAAGATTCTATTCGTACA+GGG - chr1.3:2005278-2005297 None:intergenic 30.0%
CATGAAAGAAGGGTTAAATA+GGG - chr1.3:2005207-2005226 None:intergenic 30.0%
GTCTCAATGAGTTAATTATG+TGG + chr1.3:2005352-2005371 MS.gene27022:CDS 30.0%
TCAATTATTGTTCTGTGACA+AGG + chr1.3:2005499-2005518 MS.gene27022:CDS 30.0%
TGGAGAAAAATGTACAACAT+TGG + chr1.3:2005882-2005901 MS.gene27022:CDS 30.0%
TTGTTAATGGCGTTTATCAT+TGG + chr1.3:2005640-2005659 MS.gene27022:CDS 30.0%
!! AAAAGCATCAATGACTTTAG+TGG - chr1.3:2005072-2005091 None:intergenic 30.0%
!! ACAAGAGTGTTGTATTTAGA+AGG - chr1.3:2005624-2005643 None:intergenic 30.0%
AAAGACGTTGTTGGAAAAGA+GGG - chr1.3:2005253-2005272 None:intergenic 35.0%
ATTCTGCACAACATAAGCAA+GGG - chr1.3:2005811-2005830 None:intergenic 35.0%
CCATAAGATTCTATTCGTAC+AGG - chr1.3:2005279-2005298 None:intergenic 35.0%
CCTGTACGAATAGAATCTTA+TGG + chr1.3:2005276-2005295 MS.gene27022:CDS 35.0%
GAATCTTATGGTAGTTGCAA+CGG + chr1.3:2005288-2005307 MS.gene27022:CDS 35.0%
TACGTTGTCACATGAAAGAA+GGG - chr1.3:2005217-2005236 None:intergenic 35.0%
TCTGTCTCAAACGTTTATGT+CGG + chr1.3:2005316-2005335 MS.gene27022:CDS 35.0%
TGACGTGTGATGATAGTTAA+AGG - chr1.3:2005597-2005616 None:intergenic 35.0%
TTAGACGTGTTCAAAAGTCT+TGG + chr1.3:2005091-2005110 MS.gene27022:CDS 35.0%
! AGATTTGGAGACTGAGATTT+TGG + chr1.3:2005038-2005057 MS.gene27022:CDS 35.0%
!! AGCTTTGAAGTTGATGTTGT+CGG - chr1.3:2005466-2005485 None:intergenic 35.0%
AACAAGTTTCACACACTCAG+GGG + chr1.3:2005732-2005751 MS.gene27022:CDS 40.0%
AAGACGTTGTTGGAAAAGAG+GGG - chr1.3:2005252-2005271 None:intergenic 40.0%
ATTTGGGCAATGGATCAAAG+TGG + chr1.3:2005858-2005877 MS.gene27022:CDS 40.0%
CAACAAGTTTCACACACTCA+GGG + chr1.3:2005731-2005750 MS.gene27022:CDS 40.0%
CGTGTGATGATAGTTAAAGG+AGG - chr1.3:2005594-2005613 None:intergenic 40.0%
CTACGTTGTCACATGAAAGA+AGG - chr1.3:2005218-2005237 None:intergenic 40.0%
CTAGCTATCTTGGTTGACAA+AGG - chr1.3:2006089-2006108 None:intergenic 40.0%
CTCACATCATATGACCATCA+AGG + chr1.3:2005984-2006003 MS.gene27022:CDS 40.0%
CTTCTCTCGCAACTTTCAAT+GGG + chr1.3:2005761-2005780 MS.gene27022:CDS 40.0%
CTTTGTCAACCAAGATAGCT+AGG + chr1.3:2006087-2006106 MS.gene27022:CDS 40.0%
GAAAATGTTGCCGAGATCAA+GGG + chr1.3:2005783-2005802 MS.gene27022:CDS 40.0%
GAAAGACGTTGTTGGAAAAG+AGG - chr1.3:2005254-2005273 None:intergenic 40.0%
GATTCTGCACAACATAAGCA+AGG - chr1.3:2005812-2005831 None:intergenic 40.0%
GTGATGATAGTTAAAGGAGG+AGG - chr1.3:2005591-2005610 None:intergenic 40.0%
TCTTCTCTCGCAACTTTCAA+TGG + chr1.3:2005760-2005779 MS.gene27022:CDS 40.0%
TGAAAGTTGCGAGAGAAGAT+TGG - chr1.3:2005759-2005778 None:intergenic 40.0%
TGATGGTCATATGATGTGAG+TGG - chr1.3:2005984-2006003 None:intergenic 40.0%
! ATGTTTGGCCTTTGGAAGAA+TGG + chr1.3:2005927-2005946 MS.gene27022:CDS 40.0%
! GACTCATGCATGTATGGTTT+TGG + chr1.3:2005429-2005448 MS.gene27022:CDS 40.0%
! GTTTTCCAAACTTTCCTCCA+AGG - chr1.3:2005962-2005981 None:intergenic 40.0%
! TGTTTCGTATGTTTGGCCTT+TGG + chr1.3:2005919-2005938 MS.gene27022:CDS 40.0%
!! CATGTGCCTCCTTTTTAGAA+AGG - chr1.3:2005139-2005158 None:intergenic 40.0%
!! GCTTTGAAGTTGATGTTGTC+GGG - chr1.3:2005465-2005484 None:intergenic 40.0%
!! TGCCTCCTTTTTAGAAAGGT+GGG - chr1.3:2005135-2005154 None:intergenic 40.0%
AAAGGAGGAGGATGTTGAGT+AGG - chr1.3:2005579-2005598 None:intergenic 45.0%
AAGAATGGCGATCAACTCCT+TGG + chr1.3:2005942-2005961 MS.gene27022:CDS 45.0%
AAGGAGGAGGATGTTGAGTA+GGG - chr1.3:2005578-2005597 None:intergenic 45.0%
ACAAGTTTCACACACTCAGG+GGG + chr1.3:2005733-2005752 MS.gene27022:CDS 45.0%
ACATGCATGAGTCGTTGTCA+AGG - chr1.3:2005422-2005441 None:intergenic 45.0%
CAACTCCTTGGAGGAAAGTT+TGG + chr1.3:2005954-2005973 MS.gene27022:CDS 45.0%
GACAACGACTCATGCATGTA+TGG + chr1.3:2005423-2005442 MS.gene27022:CDS 45.0%
GCAACAAGTTTCACACACTC+AGG + chr1.3:2005730-2005749 MS.gene27022:CDS 45.0%
GGAAAATGTTGCCGAGATCA+AGG + chr1.3:2005782-2005801 MS.gene27022:CDS 45.0%
GGCAAAATGAGTTGCCTTGA+TGG - chr1.3:2006001-2006020 None:intergenic 45.0%
GGTGAACCTCTCTAGTTGTT+GGG - chr1.3:2005380-2005399 None:intergenic 45.0%
GTTGACAAAGGAGCTATGCT+TGG - chr1.3:2006077-2006096 None:intergenic 45.0%
GTTGATCGCCATTCTTCCAA+AGG - chr1.3:2005938-2005957 None:intergenic 45.0%
TACAGGGTGAAAGACGTTGT+TGG - chr1.3:2005262-2005281 None:intergenic 45.0%
TCCTGTCGTCTTGCACATTT+GGG + chr1.3:2005842-2005861 MS.gene27022:CDS 45.0%
! AGACCCCCACCTTTCTAAAA+AGG + chr1.3:2005127-2005146 MS.gene27022:CDS 45.0%
!! CCTCCTTTTTAGAAAGGTGG+GGG - chr1.3:2005133-2005152 None:intergenic 45.0%
!! GCCTCCTTTTTAGAAAGGTG+GGG - chr1.3:2005134-2005153 None:intergenic 45.0%
!! GTGCCTCCTTTTTAGAAAGG+TGG - chr1.3:2005136-2005155 None:intergenic 45.0%
!! GTTTGGTGTCCTAGCTATCT+TGG - chr1.3:2006099-2006118 None:intergenic 45.0%
!! TGGAGACTGAGATTTTGGTG+TGG + chr1.3:2005043-2005062 MS.gene27022:CDS 45.0%
AATGGCGATCAACTCCTTGG+AGG + chr1.3:2005945-2005964 MS.gene27022:CDS 50.0%
AGCAAGGGAACCCTTGATCT+CGG - chr1.3:2005796-2005815 None:intergenic 50.0%
AGGAGGAGGATGTTGAGTAG+GGG - chr1.3:2005577-2005596 None:intergenic 50.0%
CGGTGAACCTCTCTAGTTGT+TGG - chr1.3:2005381-2005400 None:intergenic 50.0%
CGTCTTGCACATTTGGGCAA+TGG + chr1.3:2005848-2005867 MS.gene27022:CDS 50.0%
CTCCTGTCGTCTTGCACATT+TGG + chr1.3:2005841-2005860 MS.gene27022:CDS 50.0%
GGGCAATGGATCAAAGTGGA+TGG + chr1.3:2005862-2005881 MS.gene27022:CDS 50.0%
GTGGAACCCAACAACTAGAG+AGG + chr1.3:2005371-2005390 MS.gene27022:CDS 50.0%
TCGTTGTCAAGGCAGAGACT+CGG - chr1.3:2005411-2005430 None:intergenic 50.0%
! CCCCCACCTTTCTAAAAAGG+AGG + chr1.3:2005130-2005149 MS.gene27022:CDS 50.0%
GCCCAAATGTGCAAGACGAC+AGG - chr1.3:2005846-2005865 None:intergenic 55.0%
TTGTCAAGGCAGAGACTCGG+AGG - chr1.3:2005408-2005427 None:intergenic 55.0%
GGCAGAGACTCGGAGGAACA+CGG - chr1.3:2005401-2005420 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 2005024 2006121 2005024 ID=MS.gene27022
chr1.3 mRNA 2005024 2006121 2005024 ID=MS.gene27022.t1;Parent=MS.gene27022
chr1.3 exon 2005024 2006121 2005024 ID=MS.gene27022.t1.exon1;Parent=MS.gene27022.t1
chr1.3 CDS 2005024 2006121 2005024 ID=cds.MS.gene27022.t1;Parent=MS.gene27022.t1
Gene Sequence

>MS.gene27022

ATGAATTTAGGAATAGATTTGGAGACTGAGATTTTGGTGTGGCTGCCACTAAAGTCATTGATGCTTTTTAGACGTGTTCAAAAGTCTTGGAATGTTCTTATTCAGACCCCCACCTTTCTAAAAAGGAGGCACATGAACATGTCTGATAGCCATAGTCTCATGATTCTTTATAAAACAATACCCTATTTAACCCTTCTTTCATGTGACAACGTAGCACACATCAAACCCCTCTTTTCCAACAACGTCTTTCACCCTGTACGAATAGAATCTTATGGTAGTTGCAACGGTGTTTTCTGTCTCAAACGTTTATGTCGGTTTCATAAAAGTTGTCTCAATGAGTTAATTATGTGGAACCCAACAACTAGAGAGGTTCACCGTGTTCCTCCGAGTCTCTGCCTTGACAACGACTCATGCATGTATGGTTTTGGTGCTGATGATCCCGACAACATCAACTTCAAAGCTGTGAAACTTCATATCAATTATTGTTCTGTGACAAGGAAACATTATATTTCATTTTCGGAAGTTTATAATCTAAGTACTAAATTATGGACCCCTACTCAACATCCTCCTCCTTTAACTATCATCACACGTCAATGTCCTTCTAAATACAACACTCTTGTTAATGGCGTTTATCATTGGATTACAGAGAATACATACTACTATCACAATGATTATGCTGCAAATATTCTATGTTTTGACTTTCACAGCAACAAGTTTCACACACTCAGGGGGCCAATCTTCTCTCGCAACTTTCAATGGGAAAATGTTGCCGAGATCAAGGGTTCCCTTGCTTATGTTGTGCAGAATCACTTCAATGCTCCTGTCGTCTTGCACATTTGGGCAATGGATCAAAGTGGATGGAGAAAAATGTACAACATTGGCCCAGTTTTTTCAATGTTTCGTATGTTTGGCCTTTGGAAGAATGGCGATCAACTCCTTGGAGGAAAGTTTGGAAAACCACTCACATCATATGACCATCAAGGCAACTCATTTTGCCAATTTCAAATTGATGTTGATGATAATGAATATTTTTGGATTCATGAGTATGTGCCAAGCATAGCTCCTTTGTCAACCAAGATAGCTAGGACACCAAACTAG
Protein sequence

>MS.gene27022.t1

MNLGIDLETEILVWLPLKSLMLFRRVQKSWNVLIQTPTFLKRRHMNMSDSHSLMILYKTIPYLTLLSCDNVAHIKPLFSNNVFHPVRIESYGSCNGVFCLKRLCRFHKSCLNELIMWNPTTREVHRVPPSLCLDNDSCMYGFGADDPDNINFKAVKLHINYCSVTRKHYISFSEVYNLSTKLWTPTQHPPPLTIITRQCPSKYNTLVNGVYHWITENTYYYHNDYAANILCFDFHSNKFHTLRGPIFSRNFQWENVAEIKGSLAYVVQNHFNAPVVLHIWAMDQSGWRKMYNIGPVFSMFRMFGLWKNGDQLLGGKFGKPLTSYDHQGNSFCQFQIDVDDNEYFWIHEYVPSIAPLSTKIARTPN