AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63657


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63657.t1 MTR_3g034160 89.103 312 33 1 1 312 64 374 0.0 557
MS.gene63657.t1 MTR_3g034180 86.218 312 42 1 1 312 178 488 0.0 554
MS.gene63657.t1 MTR_3g034130 85.619 299 43 0 1 299 64 362 0.0 526
MS.gene63657.t1 MTR_3g103020 63.810 315 99 6 3 313 75 378 4.73e-134 385
MS.gene63657.t1 MTR_4g117720 62.229 323 98 10 1 313 70 378 2.55e-126 366
MS.gene63657.t1 MTR_6g060650 60.870 322 105 6 1 312 62 372 2.26e-120 350
MS.gene63657.t1 MTR_4g109280 61.093 311 102 8 6 313 65 359 1.78e-109 322
MS.gene63657.t1 MTR_4g109270 56.740 319 114 7 1 313 64 364 2.18e-109 322
MS.gene63657.t1 MTR_4g122850 55.732 314 122 9 6 313 62 364 2.97e-107 317
MS.gene63657.t1 MTR_4g117770 56.592 311 115 5 9 313 71 367 8.51e-105 311
MS.gene63657.t1 MTR_4g117810 56.592 311 115 5 9 313 71 367 8.51e-105 311
MS.gene63657.t1 MTR_4g117850 55.375 307 112 9 7 306 85 373 4.91e-101 301
MS.gene63657.t1 MTR_4g094365 52.665 319 128 8 1 313 63 364 9.75e-101 300
MS.gene63657.t1 MTR_4g117780 54.487 312 120 7 9 313 71 367 1.05e-99 298
MS.gene63657.t1 MTR_4g023080 53.503 314 120 8 1 312 64 353 8.71e-98 292
MS.gene63657.t1 MTR_4g118380 54.305 302 106 6 6 286 67 357 9.07e-98 292
MS.gene63657.t1 MTR_4g023090 50.152 329 129 8 1 311 71 382 3.43e-96 289
MS.gene63657.t1 MTR_5g097210 50.492 305 135 6 7 310 71 360 1.34e-95 287
MS.gene63657.t1 MTR_4g021785 51.429 315 128 7 1 313 64 355 7.68e-95 285
MS.gene63657.t1 MTR_4g116330 51.603 312 130 7 8 313 84 380 1.47e-94 285
MS.gene63657.t1 MTR_5g070080 50.602 332 126 8 6 313 69 386 2.94e-94 285
MS.gene63657.t1 MTR_4g023380 48.094 341 117 9 1 313 71 379 1.68e-90 275
MS.gene63657.t1 MTR_4g117870 50.318 314 108 7 1 313 1 267 8.41e-90 269
MS.gene63657.t1 MTR_5g070130 49.533 321 136 10 6 313 70 377 2.26e-89 272
MS.gene63657.t1 MTR_4g023070 48.788 330 133 11 1 312 58 369 8.66e-88 268
MS.gene63657.t1 MTR_4g023120 48.632 329 137 10 1 313 58 370 8.45e-86 262
MS.gene63657.t1 MTR_4g117750 49.679 312 128 7 7 309 64 355 1.12e-85 266
MS.gene63657.t1 MTR_4g117750 61.468 109 40 1 205 311 373 481 5.42e-35 132
MS.gene63657.t1 MTR_1g055135 47.619 315 145 8 7 313 73 375 1.22e-85 262
MS.gene63657.t1 MTR_4g023130 54.244 271 100 7 44 312 64 312 3.62e-84 256
MS.gene63657.t1 MTR_8g433040 49.679 312 124 9 9 313 79 364 2.14e-82 253
MS.gene63657.t1 MTR_8g032380 49.679 312 124 9 9 313 79 364 2.14e-82 253
MS.gene63657.t1 MTR_5g070088 45.783 332 145 8 6 313 66 386 2.57e-81 251
MS.gene63657.t1 MTR_1g055195 47.484 318 140 8 2 313 182 478 2.60e-81 254
MS.gene63657.t1 MTR_4g023190 49.527 317 130 11 1 311 65 357 8.27e-81 249
MS.gene63657.t1 MTR_4g023200 48.580 317 134 11 1 311 65 358 1.45e-80 248
MS.gene63657.t1 MTR_4g023150 48.265 317 135 11 1 311 65 358 7.52e-79 244
MS.gene63657.t1 MTR_4g023440 46.965 313 112 8 1 313 74 332 2.56e-78 242
MS.gene63657.t1 MTR_8g032390 47.619 315 109 11 7 308 99 370 3.98e-78 243
MS.gene63657.t1 MTR_4g116320 57.589 224 80 6 91 310 43 255 8.03e-76 233
MS.gene63657.t1 MTR_4g118400 46.844 301 112 8 16 307 33 294 1.52e-74 231
MS.gene63657.t1 MTR_8g040935 56.338 213 81 4 107 313 2 208 1.06e-72 223
MS.gene63657.t1 MTR_4g118370 45.357 280 121 6 33 310 8 257 2.10e-69 216
MS.gene63657.t1 MTR_8g013010 57.870 216 74 6 1 214 109 309 2.66e-69 218
MS.gene63657.t1 MTR_7g079400 42.071 309 156 8 14 313 43 337 7.21e-69 218
MS.gene63657.t1 MTR_8g433030 54.626 227 84 8 87 308 125 337 4.32e-66 211
MS.gene63657.t1 MTR_7g079370 42.500 320 148 11 7 307 48 350 5.65e-66 211
MS.gene63657.t1 MTR_4g121580 46.230 305 116 12 7 303 75 339 1.10e-64 209
MS.gene63657.t1 MTR_4g116330 43.590 312 116 8 8 313 84 341 1.17e-64 207
MS.gene63657.t1 MTR_6g463430 51.905 210 85 5 109 313 4 202 1.08e-56 182
MS.gene63657.t1 MTR_8g102520 40.385 312 144 10 7 313 48 322 1.51e-56 186
MS.gene63657.t1 MTR_1g055175 49.000 200 92 5 118 313 8 201 1.44e-54 177
MS.gene63657.t1 MTR_1g055250 43.290 231 116 8 74 300 34 253 8.78e-52 173
MS.gene63657.t1 MTR_4g117430 51.149 174 62 4 46 217 3 155 3.85e-50 164
MS.gene63657.t1 MTR_4g117530 38.966 290 117 10 28 313 20 253 8.22e-50 166
MS.gene63657.t1 MTR_1g055165 52.761 163 74 3 153 313 157 318 1.21e-47 162
MS.gene63657.t1 MTR_4g114700 40.149 269 100 6 42 304 5 218 2.25e-46 157
MS.gene63657.t1 MTR_4g116340 50.279 179 73 5 7 180 80 247 1.06e-45 155
MS.gene63657.t1 MTR_2g048580 33.548 310 160 11 10 313 73 342 1.38e-42 150
MS.gene63657.t1 MTR_4g118360 57.812 128 48 3 190 313 1 126 3.61e-41 139
MS.gene63657.t1 MTR_7g079420 34.043 282 131 9 45 313 905 1144 8.49e-38 143
MS.gene63657.t1 MTR_4g122860 41.709 199 74 8 123 313 156 320 3.93e-36 133
MS.gene63657.t1 MTR_8g098830 43.750 176 81 6 114 282 30 194 5.19e-36 129
MS.gene63657.t1 MTR_5g023000 66.667 93 31 0 221 313 7 99 6.63e-34 120
MS.gene63657.t1 MTR_6g034720 45.000 160 69 5 40 196 31 174 9.21e-31 115
MS.gene63657.t1 MTR_7g117720 52.083 144 53 7 7 145 52 184 9.12e-30 114
MS.gene63657.t1 MTR_7g117720 49.505 101 46 3 213 308 172 272 1.27e-17 81.6
MS.gene63657.t1 MTR_7g079450 41.781 146 70 4 174 313 1 137 2.45e-25 99.0
MS.gene63657.t1 MTR_5g069120 45.736 129 61 2 6 127 51 177 7.13e-24 96.3
MS.gene63657.t1 MTR_2g028130 26.523 279 163 12 11 264 78 339 8.08e-21 92.4
MS.gene63657.t1 MTR_1g068875 28.405 257 151 12 3 243 52 291 1.12e-20 91.7
MS.gene63657.t1 MTR_4g122840 41.176 136 42 4 181 313 164 264 5.82e-20 87.8
MS.gene63657.t1 MTR_4g133170 29.572 257 147 13 2 242 51 289 2.00e-19 88.2
MS.gene63657.t1 MTR_0667s0010 26.923 260 149 10 37 268 88 334 2.31e-19 88.2
MS.gene63657.t1 MTR_2g028160 27.113 284 159 11 21 274 86 351 2.51e-19 88.2
MS.gene63657.t1 MTR_4g023430 54.878 82 34 1 235 313 141 222 2.95e-19 85.1
MS.gene63657.t1 MTR_2g426020 24.627 268 166 9 31 276 88 341 1.63e-18 85.5
MS.gene63657.t1 MTR_8g013005 67.797 59 19 0 255 313 1 59 4.50e-18 77.0
MS.gene63657.t1 MTR_2g024110 25.090 279 168 11 8 269 70 324 4.56e-18 84.0
MS.gene63657.t1 MTR_2g026010 26.820 261 163 11 32 276 78 326 5.43e-18 84.0
MS.gene63657.t1 MTR_4g070550 26.316 285 162 11 3 250 53 326 7.88e-18 83.6
MS.gene63657.t1 MTR_2g031640 27.111 225 139 7 33 242 81 295 1.87e-17 82.4
MS.gene63657.t1 MTR_2g025960 25.926 270 159 11 39 282 1 255 2.02e-17 81.6
MS.gene63657.t1 MTR_2g426070 29.224 219 128 8 57 261 129 334 3.63e-17 81.6
MS.gene63657.t1 MTR_1g055200 49.451 91 40 3 42 131 5 90 1.46e-16 74.3
MS.gene63657.t1 MTR_1g068835 26.749 243 145 11 19 243 65 292 1.79e-16 79.7
MS.gene63657.t1 MTR_2g426090 24.354 271 165 11 29 276 86 339 2.70e-16 79.3
MS.gene63657.t1 MTR_2g078870 32.338 201 104 11 44 238 58 232 2.98e-16 78.2
MS.gene63657.t1 MTR_2g028140 26.378 254 146 9 25 250 91 331 3.38e-16 79.0
MS.gene63657.t1 MTR_3g083010 25.087 287 176 9 17 276 83 357 6.73e-16 78.2
MS.gene63657.t1 MTR_2g025420 24.528 265 151 10 44 274 107 356 1.26e-15 77.4
MS.gene63657.t1 MTR_3g083640 27.206 272 162 11 44 305 157 402 1.65e-15 77.0
MS.gene63657.t1 MTR_1g054725 29.437 231 131 11 21 238 95 306 3.24e-15 75.9
MS.gene63657.t1 MTR_5g037680 25.795 283 173 10 38 305 121 381 3.33e-15 76.3
MS.gene63657.t1 MTR_2g021770 27.160 324 193 13 17 308 93 405 3.92e-15 75.9
MS.gene63657.t1 MTR_1g068860 27.016 248 139 9 27 243 58 294 4.83e-15 75.5
MS.gene63657.t1 MTR_4g117550 27.619 315 174 14 17 311 94 374 5.18e-15 75.1
MS.gene63657.t1 MTR_2g021150 27.413 259 162 10 15 264 87 328 6.18e-15 75.1
MS.gene63657.t1 MTR_6g053240 25.604 207 130 5 41 238 125 316 1.45e-14 73.9
MS.gene63657.t1 MTR_4g055060 27.823 248 147 10 9 243 94 322 1.97e-14 73.6
MS.gene63657.t1 MTR_2g031720 24.710 259 168 9 39 280 92 340 2.89e-14 73.2
MS.gene63657.t1 MTR_6g053260 28.230 209 129 7 34 238 429 620 4.16e-14 73.2
MS.gene63657.t1 MTR_4g030830 24.422 303 166 13 44 305 113 393 4.55e-14 72.4
MS.gene63657.t1 MTR_3g010970 27.372 274 156 11 41 305 152 391 4.66e-14 72.4
MS.gene63657.t1 MTR_2g021155 27.876 226 138 7 26 238 669 882 5.10e-14 73.2
MS.gene63657.t1 MTR_2g021155 29.756 205 124 8 44 242 131 321 8.22e-13 69.3
MS.gene63657.t1 MTR_4g031770 28.054 221 126 11 31 242 93 289 6.24e-14 72.0
MS.gene63657.t1 MTR_2g031680 25.333 225 142 7 32 242 80 292 7.84e-14 71.6
MS.gene63657.t1 MTR_3g010870 28.037 214 123 9 32 238 122 311 1.03e-13 71.6
MS.gene63657.t1 MTR_2g461450 26.667 225 139 8 34 251 99 304 1.33e-13 70.9
MS.gene63657.t1 MTR_2g425980 27.948 229 132 9 54 262 119 334 2.04e-13 70.9
MS.gene63657.t1 MTR_8g467670 26.710 307 183 15 17 303 88 372 3.77e-13 69.7
MS.gene63657.t1 MTR_7g056390 27.622 286 139 12 41 285 130 388 4.09e-13 69.7
MS.gene63657.t1 MTR_2g024100 29.167 216 113 11 47 238 107 306 4.60e-13 69.7
MS.gene63657.t1 MTR_0044s0300 28.780 205 109 8 44 238 138 315 4.62e-13 69.7
MS.gene63657.t1 MTR_7g070880 25.941 239 138 9 56 264 146 375 5.44e-13 69.3
MS.gene63657.t1 MTR_4g023100 63.158 57 19 1 257 313 65 119 5.71e-13 65.1
MS.gene63657.t1 MTR_3g030250 25.267 281 158 9 46 305 130 379 5.90e-13 69.3
MS.gene63657.t1 MTR_7g070830 25.941 239 138 9 56 264 146 375 6.92e-13 68.9
MS.gene63657.t1 MTR_3g006670 26.818 220 137 8 31 242 133 336 7.73e-13 68.9
MS.gene63657.t1 MTR_5g064700 25.347 288 158 13 59 308 98 366 8.41e-13 68.6
MS.gene63657.t1 MTR_1g094210 27.888 251 140 11 40 278 151 372 9.70e-13 68.6
MS.gene63657.t1 MTR_2g021190 27.228 202 130 7 41 238 116 304 1.09e-12 68.2
MS.gene63657.t1 MTR_0129s0070 25.725 276 172 9 57 312 136 398 1.27e-12 68.2
MS.gene63657.t1 MTR_2g043410 29.386 228 124 8 40 251 133 339 1.43e-12 68.2
MS.gene63657.t1 MTR_2g078900 30.220 182 100 8 59 238 153 309 1.44e-12 67.8
MS.gene63657.t1 MTR_6g027910 26.761 213 132 5 38 238 106 306 1.69e-12 67.8
MS.gene63657.t1 MTR_7g077910 25.652 230 137 7 41 251 42 256 2.18e-12 67.4
MS.gene63657.t1 MTR_3g023930 27.206 272 154 11 44 305 130 367 2.26e-12 67.4
MS.gene63657.t1 MTR_3g072470 26.408 284 148 11 41 286 130 390 2.27e-12 67.4
MS.gene63657.t1 MTR_8g099460 22.924 301 183 10 4 283 56 328 2.30e-12 67.4
MS.gene63657.t1 MTR_5g097680 25.442 283 162 12 59 308 159 425 2.54e-12 67.4
MS.gene63657.t1 MTR_7g445890 26.383 235 140 9 41 251 87 312 2.99e-12 67.0
MS.gene63657.t1 MTR_2g426060 24.715 263 153 11 33 264 88 336 3.17e-12 67.0
MS.gene63657.t1 MTR_7g013590 28.155 206 131 6 44 242 129 324 3.55e-12 67.0
MS.gene63657.t1 MTR_3g009310 26.804 194 113 6 56 243 157 327 4.49e-12 66.6
MS.gene63657.t1 MTR_7g056290 27.305 282 145 11 41 285 134 392 4.51e-12 66.6
MS.gene63657.t1 MTR_5g022040 25.984 254 142 11 18 247 161 392 6.96e-12 66.2
MS.gene63657.t1 MTR_1g055145 45.946 74 38 2 157 229 130 202 7.18e-12 65.1
MS.gene63657.t1 MTR_0054s0090 25.087 287 170 10 56 311 135 407 8.89e-12 65.9
MS.gene63657.t1 MTR_6g090180 25.795 283 164 10 54 306 168 434 9.08e-12 65.9
MS.gene63657.t1 MTR_3g030320 26.877 253 140 14 1 238 1 223 1.29e-11 64.7
MS.gene63657.t1 MTR_7g057270 26.295 251 139 11 31 248 107 344 1.36e-11 65.1
MS.gene63657.t1 MTR_0464s0020 27.826 230 134 9 41 251 136 352 1.37e-11 65.1
MS.gene63657.t1 MTR_4g109290 60.377 53 21 0 261 313 136 188 1.40e-11 62.8
MS.gene63657.t1 MTR_2g038680 24.465 327 181 15 27 308 104 409 1.43e-11 65.1
MS.gene63657.t1 MTR_0129s0050 26.403 303 166 13 47 308 120 406 1.68e-11 65.1
MS.gene63657.t1 MTR_4g108820 27.519 258 138 12 21 260 85 311 1.70e-11 64.3
MS.gene63657.t1 MTR_8g464770 25.000 308 196 11 17 307 88 377 1.90e-11 64.7
MS.gene63657.t1 MTR_3g006500 25.850 294 168 11 32 305 106 369 2.01e-11 64.7
MS.gene63657.t1 MTR_4g037465 25.769 260 142 11 36 264 110 349 2.22e-11 64.3
MS.gene63657.t1 MTR_7g056503 25.589 297 175 13 40 305 116 397 2.41e-11 64.3
MS.gene63657.t1 MTR_3g010590 26.977 215 117 10 32 238 124 306 2.92e-11 63.9
MS.gene63657.t1 MTR_0054s0100 25.347 288 168 11 56 311 137 409 3.63e-11 63.9
MS.gene63657.t1 MTR_7g056003 26.840 231 132 7 41 251 118 331 3.98e-11 63.9
MS.gene63657.t1 MTR_5g086590 27.778 198 120 9 54 242 11 194 4.42e-11 62.4
MS.gene63657.t1 MTR_2g078850 28.713 202 115 8 44 238 130 309 4.43e-11 63.5
MS.gene63657.t1 MTR_2g021252 26.633 199 115 6 44 238 145 316 5.56e-11 63.2
MS.gene63657.t1 MTR_4g028510 27.018 285 154 12 59 310 139 402 6.15e-11 63.2
MS.gene63657.t1 MTR_2g064960 64.286 42 15 0 272 313 18 59 7.81e-11 57.4
MS.gene63657.t1 MTR_3g030240 24.653 288 155 12 41 305 129 377 8.18e-11 62.8
MS.gene63657.t1 MTR_7g069550 27.985 268 136 13 46 283 133 373 8.61e-11 62.8
MS.gene63657.t1 MTR_5g046260 23.860 285 148 11 32 305 71 297 9.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63657.t1 AT3G06240 29.060 234 130 10 39 260 163 372 8.27e-19 86.7
MS.gene63657.t1 AT4G12560 28.063 253 164 10 40 276 90 340 9.11e-16 77.8
MS.gene63657.t1 AT4G12560 28.063 253 164 10 40 276 90 340 9.11e-16 77.8
MS.gene63657.t1 AT4G12560 28.063 253 164 10 40 276 90 340 9.11e-16 77.8

Find 73 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGCATTCATATAATA+AGG 0.164755 3.2:+23065265 None:intergenic
CATGTTGTCTGTATGGTTTC+GGG 0.207498 3.2:-23065450 MS.gene63657:CDS
GATTGTGATTTGTGGATATT+TGG 0.226311 3.2:-23065091 MS.gene63657:CDS
TGAATATTGGCCATCTAAAT+TGG 0.231444 3.2:+23065471 None:intergenic
TTGGAGAGTTTCTCAGTCTA+TGG 0.234107 3.2:-23065072 MS.gene63657:CDS
AGGATGGAACAATTGAAATA+TGG 0.245076 3.2:-23065042 MS.gene63657:CDS
TCATGTTGTCTGTATGGTTT+CGG 0.250972 3.2:-23065451 MS.gene63657:CDS
GTTCTTCAAGCATTTATCTA+TGG 0.293765 3.2:-23065537 MS.gene63657:CDS
GATGAAATATTATCTTCTAT+TGG 0.305333 3.2:+23065367 None:intergenic
AAAGTAGGGACGCTCTTTAA+TGG 0.309047 3.2:-23065235 MS.gene63657:CDS
ATGAAATATTATCTTCTATT+GGG 0.319010 3.2:+23065368 None:intergenic
AGATAATATTTCATCACATT+TGG 0.320818 3.2:-23065359 MS.gene63657:CDS
AAGCGATGCTTCAAAATCTA+TGG 0.326989 3.2:+23065666 None:intergenic
ATTAAAGAGCGTCCCTACTT+TGG 0.358272 3.2:+23065237 None:intergenic
TTTCCTCCTTCCAATTTAGA+TGG 0.363656 3.2:-23065481 MS.gene63657:CDS
CATACAGACAACATGAATAT+TGG 0.369761 3.2:+23065458 None:intergenic
TATTGTTGGCTTTGATTTAG+TGG 0.370118 3.2:-23065167 MS.gene63657:CDS
TTCAAGATTAGAATAAGATT+CGG 0.374154 3.2:+23065597 None:intergenic
TTAAAGAGCGTCCCTACTTT+GGG 0.374951 3.2:+23065238 None:intergenic
TCAAGATTAGAATAAGATTC+GGG 0.381250 3.2:+23065598 None:intergenic
TCTTTAATGGGACTATTCAT+TGG 0.384035 3.2:-23065222 MS.gene63657:CDS
CAATATTCATGTTGTCTGTA+TGG 0.390156 3.2:-23065457 MS.gene63657:CDS
TGGAAATGTCATCAATAGAT+AGG 0.410119 3.2:+23064972 None:intergenic
AAGTAGGGACGCTCTTTAAT+GGG 0.430028 3.2:-23065234 MS.gene63657:CDS
AGGCATTTGTTTGTGATGTC+CGG 0.432534 3.2:+23065504 None:intergenic
GGATGGAACAATTGAAATAT+GGG 0.445935 3.2:-23065041 MS.gene63657:CDS
CATTTGCATTCATATAATAA+GGG 0.448554 3.2:+23065266 None:intergenic
GAGTCTCTGCTTTCACTCCC+TGG 0.452167 3.2:-23064794 MS.gene63657:CDS
TCTAAATTGGAAGGAGGAAA+AGG 0.452281 3.2:+23065484 None:intergenic
TGATTATGCGTCACCAATCC+AGG 0.453563 3.2:+23065292 None:intergenic
AATACAAAGTGCATTCGTCT+TGG 0.453817 3.2:-23065009 MS.gene63657:CDS
ATACAAAGTGCATTCGTCTT+GGG 0.456469 3.2:-23065008 MS.gene63657:CDS
GGTTCATGGTCAAAACCATC+TGG 0.456773 3.2:+23065118 None:intergenic
AATCACAATCTGTAGGTTCA+TGG 0.459736 3.2:+23065104 None:intergenic
TGGGTCTTTACTCGTATCAT+AGG 0.461190 3.2:+23065387 None:intergenic
AACCTACAGATTGTGATTTG+TGG 0.464144 3.2:-23065099 MS.gene63657:CDS
ATTGGAACAAACGGTGGCAC+TGG 0.477184 3.2:-23064905 MS.gene63657:CDS
TTATCAATGGATGTTATTGT+TGG 0.479970 3.2:-23065181 MS.gene63657:CDS
CTCTGTATACATAGCCACTA+GGG 0.483092 3.2:+23064814 None:intergenic
CCATTCAAGAGATGATTACT+TGG 0.492530 3.2:-23065422 MS.gene63657:CDS
TGGAGAGTTTCTCAGTCTAT+GGG 0.499899 3.2:-23065071 MS.gene63657:CDS
TGGTCAAAACCATCTGGAAA+AGG 0.508561 3.2:+23065124 None:intergenic
GCAAATGATGATCCCAAAGT+AGG 0.511115 3.2:-23065250 MS.gene63657:CDS
GTTTCTCAGTCTATGGGCTA+TGG 0.513547 3.2:-23065065 MS.gene63657:CDS
TGGAAAGATATTGAGTGTCC+TGG 0.515552 3.2:-23065310 MS.gene63657:CDS
CCAAGTAATCATCTCTTGAA+TGG 0.518868 3.2:+23065422 None:intergenic
AGTCTATGGGCTATGGAGGA+TGG 0.527414 3.2:-23065058 MS.gene63657:CDS
TTTCATTGAGAGCTAATACA+TGG 0.531728 3.2:-23065330 MS.gene63657:CDS
GAAATTAAAAGTTCATGTAG+AGG 0.538733 3.2:-23065577 MS.gene63657:CDS
ATTCGGGAGGCATAAAATCA+AGG 0.540291 3.2:+23065614 None:intergenic
GGTGGTATTATTGGAACAAA+CGG 0.557309 3.2:-23064914 MS.gene63657:CDS
TTCAAGAGATGATTACTTGG+TGG 0.560339 3.2:-23065419 MS.gene63657:CDS
GGAGGCATAAAATCAAGGTT+CGG 0.562610 3.2:+23065619 None:intergenic
TTGGCTTTGATTTAGTGGAA+AGG 0.565737 3.2:-23065162 MS.gene63657:CDS
CAAATGATGATCCCAAAGTA+GGG 0.565983 3.2:-23065249 MS.gene63657:CDS
TATTGGCCATCTAAATTGGA+AGG 0.567363 3.2:+23065475 None:intergenic
AACAAACGGTGGCACTGGAT+TGG 0.570072 3.2:-23064900 MS.gene63657:CDS
AGATATTGAGTGTCCTGGAT+TGG 0.574538 3.2:-23065305 MS.gene63657:CDS
TGTTTGTGATGTCCGGTCGA+TGG 0.577681 3.2:+23065511 None:intergenic
TAAGCTTGATCACTGTCACC+AGG 0.583359 3.2:+23064776 None:intergenic
ACTGGATTGGTGAAGTATGA+TGG 0.588559 3.2:-23064887 MS.gene63657:CDS
TATCTATGGAATCCATCGAC+CGG 0.592196 3.2:-23065523 MS.gene63657:CDS
AAGCTTGATCACTGTCACCA+GGG 0.598347 3.2:+23064777 None:intergenic
ACTCTGTATACATAGCCACT+AGG 0.618200 3.2:+23064813 None:intergenic
TCTCAGTCTATGGGCTATGG+AGG 0.622849 3.2:-23065062 MS.gene63657:CDS
ATCCACAAATCACAATCTGT+AGG 0.646600 3.2:+23065097 None:intergenic
TGGCCATCTAAATTGGAAGG+AGG 0.651013 3.2:+23065478 None:intergenic
CGAACCATGTGAACCCCTAG+TGG 0.657467 3.2:-23064828 MS.gene63657:CDS
AGATTAGAATAAGATTCGGG+AGG 0.659056 3.2:+23065601 None:intergenic
TCTGTATACATAGCCACTAG+GGG 0.693139 3.2:+23064815 None:intergenic
ATAGCCACTAGGGGTTCACA+TGG 0.697094 3.2:+23064824 None:intergenic
GGTATTATTGGAACAAACGG+TGG 0.700731 3.2:-23064911 MS.gene63657:CDS
TTGGTGAAGTATGATGGCAA+TGG 0.739876 3.2:-23064881 MS.gene63657:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATATTATCTTCTATT+GGG + chr3.2:23065104-23065123 None:intergenic 15.0%
!! AGATAATATTTCATCACATT+TGG - chr3.2:23065110-23065129 MS.gene63657:CDS 20.0%
!! CATTTGCATTCATATAATAA+GGG + chr3.2:23065206-23065225 None:intergenic 20.0%
!! GATGAAATATTATCTTCTAT+TGG + chr3.2:23065105-23065124 None:intergenic 20.0%
!! TCATTTGCATTCATATAATA+AGG + chr3.2:23065207-23065226 None:intergenic 20.0%
!! TTCAAGATTAGAATAAGATT+CGG + chr3.2:23064875-23064894 None:intergenic 20.0%
! GAAATTAAAAGTTCATGTAG+AGG - chr3.2:23064892-23064911 MS.gene63657:CDS 25.0%
! TCAAGATTAGAATAAGATTC+GGG + chr3.2:23064874-23064893 None:intergenic 25.0%
! TTATCAATGGATGTTATTGT+TGG - chr3.2:23065288-23065307 MS.gene63657:CDS 25.0%
!! TTTTCGCAATGATTTATCAA+TGG - chr3.2:23065275-23065294 MS.gene63657:CDS 25.0%
ACAAAAAGTGGTGGTATTAT+TGG - chr3.2:23065546-23065565 MS.gene63657:CDS 30.0%
AGGATGGAACAATTGAAATA+TGG - chr3.2:23065427-23065446 MS.gene63657:CDS 30.0%
CAATATTCATGTTGTCTGTA+TGG - chr3.2:23065012-23065031 MS.gene63657:CDS 30.0%
CATACAGACAACATGAATAT+TGG + chr3.2:23065014-23065033 None:intergenic 30.0%
GGATGGAACAATTGAAATAT+GGG - chr3.2:23065428-23065447 MS.gene63657:CDS 30.0%
GTTCTTCAAGCATTTATCTA+TGG - chr3.2:23064932-23064951 MS.gene63657:CDS 30.0%
TCTTTAATGGGACTATTCAT+TGG - chr3.2:23065247-23065266 MS.gene63657:CDS 30.0%
TGAATATTGGCCATCTAAAT+TGG + chr3.2:23065001-23065020 None:intergenic 30.0%
TGGAAATGTCATCAATAGAT+AGG + chr3.2:23065500-23065519 None:intergenic 30.0%
TTTCATTGAGAGCTAATACA+TGG - chr3.2:23065139-23065158 MS.gene63657:CDS 30.0%
! ACTTTTTGTAGAGCATATTG+GGG + chr3.2:23065535-23065554 None:intergenic 30.0%
! GATTGTGATTTGTGGATATT+TGG - chr3.2:23065378-23065397 MS.gene63657:CDS 30.0%
!! CACTTTTTGTAGAGCATATT+GGG + chr3.2:23065536-23065555 None:intergenic 30.0%
!! TATTGTTGGCTTTGATTTAG+TGG - chr3.2:23065302-23065321 MS.gene63657:CDS 30.0%
AACCTACAGATTGTGATTTG+TGG - chr3.2:23065370-23065389 MS.gene63657:CDS 35.0%
AAGCGATGCTTCAAAATCTA+TGG + chr3.2:23064806-23064825 None:intergenic 35.0%
AATACAAAGTGCATTCGTCT+TGG - chr3.2:23065460-23065479 MS.gene63657:CDS 35.0%
AATCACAATCTGTAGGTTCA+TGG + chr3.2:23065368-23065387 None:intergenic 35.0%
AGATTAGAATAAGATTCGGG+AGG + chr3.2:23064871-23064890 None:intergenic 35.0%
ATACAAAGTGCATTCGTCTT+GGG - chr3.2:23065461-23065480 MS.gene63657:CDS 35.0%
ATATGCTCTACAAAAAGTGG+TGG - chr3.2:23065537-23065556 MS.gene63657:CDS 35.0%
ATCCACAAATCACAATCTGT+AGG + chr3.2:23065375-23065394 None:intergenic 35.0%
CAAATGATGATCCCAAAGTA+GGG - chr3.2:23065220-23065239 MS.gene63657:CDS 35.0%
CCAAGTAATCATCTCTTGAA+TGG + chr3.2:23065050-23065069 None:intergenic 35.0%
CCAATATGCTCTACAAAAAG+TGG - chr3.2:23065534-23065553 MS.gene63657:CDS 35.0%
CCATTCAAGAGATGATTACT+TGG - chr3.2:23065047-23065066 MS.gene63657:CDS 35.0%
GGTGGTATTATTGGAACAAA+CGG - chr3.2:23065555-23065574 MS.gene63657:CDS 35.0%
TATTGGCCATCTAAATTGGA+AGG + chr3.2:23064997-23065016 None:intergenic 35.0%
TCATGTTGTCTGTATGGTTT+CGG - chr3.2:23065018-23065037 MS.gene63657:CDS 35.0%
TCTAAATTGGAAGGAGGAAA+AGG + chr3.2:23064988-23065007 None:intergenic 35.0%
TTCAAGAGATGATTACTTGG+TGG - chr3.2:23065050-23065069 MS.gene63657:CDS 35.0%
TTTCCTCCTTCCAATTTAGA+TGG - chr3.2:23064988-23065007 MS.gene63657:CDS 35.0%
! CTTTTTGTAGAGCATATTGG+GGG + chr3.2:23065534-23065553 None:intergenic 35.0%
!! TTGGCTTTGATTTAGTGGAA+AGG - chr3.2:23065307-23065326 MS.gene63657:CDS 35.0%
!!! CCACTTTTTGTAGAGCATAT+TGG + chr3.2:23065537-23065556 None:intergenic 35.0%
AAAGTAGGGACGCTCTTTAA+TGG - chr3.2:23065234-23065253 MS.gene63657:CDS 40.0%
AAGTAGGGACGCTCTTTAAT+GGG - chr3.2:23065235-23065254 MS.gene63657:CDS 40.0%
ACTCTGTATACATAGCCACT+AGG + chr3.2:23065659-23065678 None:intergenic 40.0%
AGATATTGAGTGTCCTGGAT+TGG - chr3.2:23065164-23065183 MS.gene63657:CDS 40.0%
AGGCATTTGTTTGTGATGTC+CGG + chr3.2:23064968-23064987 None:intergenic 40.0%
CATGTTGTCTGTATGGTTTC+GGG - chr3.2:23065019-23065038 MS.gene63657:CDS 40.0%
CTCTGTATACATAGCCACTA+GGG + chr3.2:23065658-23065677 None:intergenic 40.0%
GCAAATGATGATCCCAAAGT+AGG - chr3.2:23065219-23065238 MS.gene63657:CDS 40.0%
GGTATTATTGGAACAAACGG+TGG - chr3.2:23065558-23065577 MS.gene63657:CDS 40.0%
TATCTATGGAATCCATCGAC+CGG - chr3.2:23064946-23064965 MS.gene63657:CDS 40.0%
TATTGGGGGATAGTACTCAA+TGG + chr3.2:23065520-23065539 None:intergenic 40.0%
TCTGTATACATAGCCACTAG+GGG + chr3.2:23065657-23065676 None:intergenic 40.0%
TGGAAAGATATTGAGTGTCC+TGG - chr3.2:23065159-23065178 MS.gene63657:CDS 40.0%
TGGAGAGTTTCTCAGTCTAT+GGG - chr3.2:23065398-23065417 MS.gene63657:CDS 40.0%
TGGGTCTTTACTCGTATCAT+AGG + chr3.2:23065085-23065104 None:intergenic 40.0%
TGGTCAAAACCATCTGGAAA+AGG + chr3.2:23065348-23065367 None:intergenic 40.0%
TTGGAGAGTTTCTCAGTCTA+TGG - chr3.2:23065397-23065416 MS.gene63657:CDS 40.0%
TTGGTGAAGTATGATGGCAA+TGG - chr3.2:23065588-23065607 MS.gene63657:CDS 40.0%
! ATTCGGGAGGCATAAAATCA+AGG + chr3.2:23064858-23064877 None:intergenic 40.0%
! GGAGGCATAAAATCAAGGTT+CGG + chr3.2:23064853-23064872 None:intergenic 40.0%
!! ACTGGATTGGTGAAGTATGA+TGG - chr3.2:23065582-23065601 MS.gene63657:CDS 40.0%
!! ATTAAAGAGCGTCCCTACTT+TGG + chr3.2:23065235-23065254 None:intergenic 40.0%
!! TTAAAGAGCGTCCCTACTTT+GGG + chr3.2:23065234-23065253 None:intergenic 40.0%
AAGCTTGATCACTGTCACCA+GGG + chr3.2:23065695-23065714 None:intergenic 45.0%
GGTTCATGGTCAAAACCATC+TGG + chr3.2:23065354-23065373 None:intergenic 45.0%
TAAGCTTGATCACTGTCACC+AGG + chr3.2:23065696-23065715 None:intergenic 45.0%
TGATTATGCGTCACCAATCC+AGG + chr3.2:23065180-23065199 None:intergenic 45.0%
TGGCCATCTAAATTGGAAGG+AGG + chr3.2:23064994-23065013 None:intergenic 45.0%
! GTTTCTCAGTCTATGGGCTA+TGG - chr3.2:23065404-23065423 MS.gene63657:CDS 45.0%
! TTCGAGATGCCTTTTCCAGA+TGG - chr3.2:23065336-23065355 MS.gene63657:CDS 45.0%
ATAGCCACTAGGGGTTCACA+TGG + chr3.2:23065648-23065667 None:intergenic 50.0%
ATTGGAACAAACGGTGGCAC+TGG - chr3.2:23065564-23065583 MS.gene63657:CDS 50.0%
TGTTTGTGATGTCCGGTCGA+TGG + chr3.2:23064961-23064980 None:intergenic 50.0%
! AACAAACGGTGGCACTGGAT+TGG - chr3.2:23065569-23065588 MS.gene63657:CDS 50.0%
! AGTCTATGGGCTATGGAGGA+TGG - chr3.2:23065411-23065430 MS.gene63657:CDS 50.0%
! TCTCAGTCTATGGGCTATGG+AGG - chr3.2:23065407-23065426 MS.gene63657:CDS 50.0%
CGAACCATGTGAACCCCTAG+TGG - chr3.2:23065641-23065660 MS.gene63657:CDS 55.0%
GAGTCTCTGCTTTCACTCCC+TGG - chr3.2:23065675-23065694 MS.gene63657:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 23064775 23065716 23064775 ID=MS.gene63657
chr3.2 mRNA 23064775 23065716 23064775 ID=MS.gene63657.t1;Parent=MS.gene63657
chr3.2 exon 23064775 23065716 23064775 ID=MS.gene63657.t1.exon1;Parent=MS.gene63657.t1
chr3.2 CDS 23064775 23065716 23064775 ID=cds.MS.gene63657.t1;Parent=MS.gene63657.t1
Gene Sequence

>MS.gene63657

ATGTCAACTCTAGCTCTTGAAACTCGATCCATAGATTTTGAAGCATCGCTTAACGATGATTCTGCTTCTACTTCACCGAACCTTGATTTTATGCCTCCCGAATCTTATTCTAATCTTGAAATTAAAAGTTCATGTAGAGGATTTATAGTTTTGACTTGTTCTTCAAGCATTTATCTATGGAATCCATCGACCGGACATCACAAACAAATGCCTTTTCCTCCTTCCAATTTAGATGGCCAATATTCATGTTGTCTGTATGGTTTCGGGTACGACCATTCAAGAGATGATTACTTGGTGGTATCAGTGTCCTATGATACGAGTAAAGACCCAATAGAAGATAATATTTCATCACATTTGGAGTTTTTTTCATTGAGAGCTAATACATGGAAAGATATTGAGTGTCCTGGATTGGTGACGCATAATCACTTCCCTTATTATATGAATGCAAATGATGATCCCAAAGTAGGGACGCTCTTTAATGGGACTATTCATTGGTTCTCTTTTCGCAATGATTTATCAATGGATGTTATTGTTGGCTTTGATTTAGTGGAAAGGAAACTTTTCGAGATGCCTTTTCCAGATGGTTTTGACCATGAACCTACAGATTGTGATTTGTGGATATTTGGAGAGTTTCTCAGTCTATGGGCTATGGAGGATGGAACAATTGAAATATGGGTTATGAAAGAATACAAAGTGCATTCGTCTTGGGTTAAAACTCTTGTCCTATCTATTGATGACATTTCCATTGAGTACTATCCCCCAATATGCTCTACAAAAAGTGGTGGTATTATTGGAACAAACGGTGGCACTGGATTGGTGAAGTATGATGGCAATGGTCAGTTGCTAGAGAATCGCTCGTACTATAACGAACCATGTGAACCCCTAGTGGCTATGTATACAGAGTCTCTGCTTTCACTCCCTGGTGACAGTGATCAAGCTTAA

Protein sequence

>MS.gene63657.t1

MSTLALETRSIDFEASLNDDSASTSPNLDFMPPESYSNLEIKSSCRGFIVLTCSSSIYLWNPSTGHHKQMPFPPSNLDGQYSCCLYGFGYDHSRDDYLVVSVSYDTSKDPIEDNISSHLEFFSLRANTWKDIECPGLVTHNHFPYYMNANDDPKVGTLFNGTIHWFSFRNDLSMDVIVGFDLVERKLFEMPFPDGFDHEPTDCDLWIFGEFLSLWAMEDGTIEIWVMKEYKVHSSWVKTLVLSIDDISIEYYPPICSTKSGGIIGTNGGTGLVKYDGNGQLLENRSYYNEPCEPLVAMYTESLLSLPGDSDQA