Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048193.t1 | XP_013441647.1 | 90.5 | 179 | 17 | 0 | 1 | 179 | 1 | 179 | 9.90E-88 | 332.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048193.t1 | Q9SU30 | 29.8 | 168 | 99 | 5 | 6 | 169 | 4 | 156 | 2.0e-12 | 73.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048193.t1 | A0A072TE54 | 90.5 | 179 | 17 | 0 | 1 | 179 | 1 | 179 | 7.1e-88 | 332.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048193.t1 | MTR_0667s0010 | 90.503 | 179 | 17 | 0 | 1 | 179 | 1 | 179 | 4.08e-115 | 333 |
MS.gene048193.t1 | MTR_2g426070 | 65.285 | 193 | 52 | 5 | 1 | 179 | 1 | 192 | 1.15e-78 | 239 |
MS.gene048193.t1 | MTR_3g083010 | 65.816 | 196 | 49 | 5 | 1 | 179 | 1 | 195 | 4.20e-78 | 239 |
MS.gene048193.t1 | MTR_2g028110 | 70.930 | 172 | 47 | 2 | 6 | 177 | 4 | 172 | 8.48e-78 | 237 |
MS.gene048193.t1 | MTR_2g426060 | 70.166 | 181 | 43 | 6 | 1 | 172 | 1 | 179 | 1.91e-76 | 234 |
MS.gene048193.t1 | MTR_2g425980 | 67.553 | 188 | 49 | 5 | 1 | 179 | 1 | 185 | 1.94e-76 | 234 |
MS.gene048193.t1 | MTR_2g024100 | 76.250 | 160 | 37 | 1 | 21 | 179 | 22 | 181 | 1.11e-73 | 227 |
MS.gene048193.t1 | MTR_2g426020 | 65.027 | 183 | 50 | 5 | 1 | 172 | 1 | 180 | 1.01e-72 | 224 |
MS.gene048193.t1 | MTR_8g099460 | 67.978 | 178 | 54 | 2 | 1 | 176 | 1 | 177 | 7.05e-72 | 222 |
MS.gene048193.t1 | MTR_2g028130 | 64.948 | 194 | 49 | 6 | 1 | 179 | 1 | 190 | 1.95e-71 | 221 |
MS.gene048193.t1 | MTR_2g426090 | 64.865 | 185 | 53 | 5 | 1 | 175 | 1 | 183 | 8.12e-71 | 220 |
MS.gene048193.t1 | MTR_2g025420 | 59.067 | 193 | 65 | 4 | 1 | 179 | 1 | 193 | 1.24e-70 | 220 |
MS.gene048193.t1 | MTR_2g028140 | 65.816 | 196 | 48 | 6 | 1 | 179 | 1 | 194 | 1.76e-70 | 219 |
MS.gene048193.t1 | MTR_4g070550 | 66.316 | 190 | 51 | 6 | 1 | 179 | 1 | 188 | 3.10e-70 | 218 |
MS.gene048193.t1 | MTR_2g028160 | 60.825 | 194 | 57 | 5 | 1 | 179 | 1 | 190 | 4.94e-68 | 213 |
MS.gene048193.t1 | MTR_2g021050 | 61.749 | 183 | 40 | 5 | 1 | 179 | 1 | 157 | 5.43e-64 | 201 |
MS.gene048193.t1 | MTR_2g031720 | 61.326 | 181 | 51 | 6 | 1 | 177 | 1 | 166 | 1.66e-61 | 196 |
MS.gene048193.t1 | MTR_2g031700 | 58.757 | 177 | 59 | 4 | 1 | 177 | 1 | 163 | 3.31e-60 | 189 |
MS.gene048193.t1 | MTR_2g031640 | 58.989 | 178 | 58 | 5 | 1 | 177 | 1 | 164 | 9.64e-59 | 188 |
MS.gene048193.t1 | MTR_1g068875 | 59.649 | 171 | 58 | 3 | 6 | 176 | 4 | 163 | 8.88e-57 | 183 |
MS.gene048193.t1 | MTR_1g068835 | 58.046 | 174 | 59 | 4 | 6 | 177 | 4 | 165 | 1.07e-56 | 182 |
MS.gene048193.t1 | MTR_2g031680 | 56.742 | 178 | 63 | 4 | 1 | 178 | 1 | 164 | 1.85e-54 | 177 |
MS.gene048193.t1 | MTR_1g068905 | 58.025 | 162 | 56 | 3 | 6 | 166 | 4 | 154 | 9.19e-53 | 171 |
MS.gene048193.t1 | MTR_2g026010 | 57.803 | 173 | 59 | 4 | 6 | 177 | 4 | 163 | 2.25e-52 | 172 |
MS.gene048193.t1 | MTR_1g068860 | 58.621 | 174 | 59 | 4 | 6 | 177 | 4 | 166 | 4.97e-52 | 171 |
MS.gene048193.t1 | MTR_4g006270 | 55.152 | 165 | 59 | 4 | 6 | 170 | 4 | 153 | 1.78e-48 | 162 |
MS.gene048193.t1 | MTR_2g024110 | 51.176 | 170 | 66 | 5 | 6 | 172 | 4 | 159 | 6.46e-47 | 157 |
MS.gene048193.t1 | MTR_2g022170 | 56.934 | 137 | 46 | 3 | 9 | 145 | 7 | 130 | 2.01e-43 | 141 |
MS.gene048193.t1 | MTR_7g110360 | 45.143 | 175 | 75 | 5 | 6 | 170 | 39 | 202 | 8.41e-36 | 127 |
MS.gene048193.t1 | MTR_2g025960 | 70.455 | 88 | 21 | 1 | 90 | 172 | 1 | 88 | 1.94e-35 | 126 |
MS.gene048193.t1 | MTR_4g133170 | 40.000 | 175 | 91 | 3 | 6 | 177 | 4 | 167 | 5.84e-34 | 124 |
MS.gene048193.t1 | MTR_5g083940 | 42.424 | 165 | 48 | 5 | 6 | 170 | 4 | 121 | 1.79e-27 | 105 |
MS.gene048193.t1 | MTR_2g437190 | 52.212 | 113 | 37 | 4 | 48 | 155 | 56 | 156 | 8.97e-23 | 89.7 |
MS.gene048193.t1 | MTR_2g025995 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.21e-20 | 84.7 |
MS.gene048193.t1 | MTR_2g040050 | 43.137 | 102 | 47 | 3 | 69 | 169 | 16 | 107 | 1.20e-19 | 83.2 |
MS.gene048193.t1 | MTR_3g034180 | 30.857 | 175 | 96 | 3 | 6 | 171 | 123 | 281 | 3.50e-19 | 84.3 |
MS.gene048193.t1 | MTR_3g034160 | 30.857 | 175 | 96 | 3 | 6 | 171 | 9 | 167 | 6.09e-19 | 83.2 |
MS.gene048193.t1 | MTR_4g102410 | 27.273 | 187 | 108 | 5 | 2 | 169 | 57 | 234 | 1.04e-17 | 80.1 |
MS.gene048193.t1 | MTR_7g070440 | 32.418 | 182 | 93 | 8 | 9 | 178 | 10 | 173 | 1.83e-17 | 79.0 |
MS.gene048193.t1 | MTR_3g014540 | 30.286 | 175 | 92 | 4 | 6 | 169 | 29 | 184 | 2.14e-17 | 79.0 |
MS.gene048193.t1 | MTR_4g061340 | 32.749 | 171 | 96 | 6 | 6 | 169 | 26 | 184 | 5.80e-17 | 77.4 |
MS.gene048193.t1 | MTR_3g086970 | 39.568 | 139 | 55 | 6 | 32 | 170 | 14 | 123 | 8.15e-17 | 74.3 |
MS.gene048193.t1 | MTR_7g017040 | 30.168 | 179 | 98 | 7 | 6 | 168 | 16 | 183 | 1.81e-16 | 76.3 |
MS.gene048193.t1 | MTR_2g021155 | 33.136 | 169 | 91 | 6 | 9 | 171 | 39 | 191 | 2.18e-16 | 76.6 |
MS.gene048193.t1 | MTR_1g056710 | 32.955 | 176 | 86 | 7 | 5 | 169 | 33 | 187 | 3.17e-16 | 75.5 |
MS.gene048193.t1 | MTR_6g053260 | 31.892 | 185 | 102 | 7 | 6 | 179 | 337 | 508 | 8.93e-16 | 74.7 |
MS.gene048193.t1 | MTR_3g058470 | 29.670 | 182 | 97 | 6 | 6 | 169 | 37 | 205 | 9.58e-16 | 74.3 |
MS.gene048193.t1 | MTR_3g014570 | 29.825 | 171 | 90 | 4 | 6 | 165 | 29 | 180 | 1.01e-15 | 73.9 |
MS.gene048193.t1 | MTR_3g007330 | 30.303 | 165 | 99 | 4 | 6 | 167 | 48 | 199 | 1.31e-15 | 73.9 |
MS.gene048193.t1 | MTR_5g046300 | 31.977 | 172 | 94 | 7 | 6 | 169 | 4 | 160 | 2.13e-15 | 73.2 |
MS.gene048193.t1 | MTR_5g046290 | 31.977 | 172 | 94 | 7 | 6 | 169 | 4 | 160 | 2.13e-15 | 73.2 |
MS.gene048193.t1 | MTR_3g006670 | 31.214 | 173 | 96 | 4 | 6 | 169 | 49 | 207 | 2.84e-15 | 72.8 |
MS.gene048193.t1 | MTR_4g080200 | 30.120 | 166 | 98 | 4 | 5 | 169 | 2 | 150 | 4.52e-15 | 72.0 |
MS.gene048193.t1 | MTR_5g069760 | 32.143 | 140 | 74 | 2 | 1 | 126 | 1 | 133 | 4.90e-15 | 72.0 |
MS.gene048193.t1 | MTR_3g058440 | 28.889 | 180 | 100 | 6 | 5 | 169 | 34 | 200 | 6.05e-15 | 71.2 |
MS.gene048193.t1 | MTR_3g058480 | 27.222 | 180 | 104 | 5 | 6 | 169 | 39 | 207 | 1.02e-14 | 70.9 |
MS.gene048193.t1 | MTR_2g022000 | 28.866 | 194 | 99 | 7 | 2 | 168 | 12 | 193 | 1.05e-14 | 71.2 |
MS.gene048193.t1 | MTR_8g073550 | 28.571 | 175 | 98 | 5 | 6 | 169 | 30 | 188 | 1.35e-14 | 69.7 |
MS.gene048193.t1 | MTR_1g055070 | 31.148 | 183 | 96 | 7 | 5 | 169 | 48 | 218 | 2.24e-14 | 70.5 |
MS.gene048193.t1 | MTR_3g009310 | 31.073 | 177 | 94 | 5 | 6 | 169 | 42 | 203 | 4.29e-14 | 69.7 |
MS.gene048193.t1 | MTR_7g078900 | 31.937 | 191 | 94 | 9 | 9 | 172 | 15 | 196 | 4.64e-14 | 69.3 |
MS.gene048193.t1 | MTR_7g077070 | 31.217 | 189 | 93 | 7 | 6 | 167 | 16 | 194 | 4.74e-14 | 69.3 |
MS.gene048193.t1 | MTR_4g013180 | 32.308 | 130 | 73 | 5 | 6 | 126 | 11 | 134 | 5.26e-14 | 69.3 |
MS.gene048193.t1 | MTR_8g039500 | 27.684 | 177 | 106 | 4 | 2 | 168 | 8 | 172 | 6.04e-14 | 68.9 |
MS.gene048193.t1 | MTR_3g007410 | 33.929 | 168 | 92 | 9 | 9 | 169 | 55 | 210 | 7.71e-14 | 68.9 |
MS.gene048193.t1 | MTR_8g013010 | 28.161 | 174 | 102 | 5 | 6 | 170 | 54 | 213 | 8.91e-14 | 68.2 |
MS.gene048193.t1 | MTR_1g029650 | 32.867 | 143 | 70 | 5 | 6 | 125 | 8 | 147 | 1.02e-13 | 68.6 |
MS.gene048193.t1 | MTR_3g024040 | 33.537 | 164 | 84 | 8 | 12 | 169 | 37 | 181 | 1.14e-13 | 68.2 |
MS.gene048193.t1 | MTR_3g036290 | 30.337 | 178 | 88 | 7 | 6 | 169 | 22 | 177 | 1.27e-13 | 68.2 |
MS.gene048193.t1 | MTR_2g029990 | 30.857 | 175 | 92 | 7 | 7 | 169 | 52 | 209 | 1.29e-13 | 68.2 |
MS.gene048193.t1 | MTR_5g097220 | 28.947 | 190 | 100 | 9 | 2 | 168 | 9 | 186 | 1.66e-13 | 67.8 |
MS.gene048193.t1 | MTR_6g053240 | 29.688 | 192 | 102 | 8 | 6 | 179 | 28 | 204 | 1.70e-13 | 67.8 |
MS.gene048193.t1 | MTR_2g021190 | 32.571 | 175 | 89 | 7 | 6 | 169 | 21 | 177 | 1.72e-13 | 67.8 |
MS.gene048193.t1 | MTR_5g096630 | 29.508 | 183 | 101 | 9 | 6 | 169 | 18 | 191 | 1.87e-13 | 67.8 |
MS.gene048193.t1 | MTR_5g057643 | 34.857 | 175 | 89 | 7 | 6 | 169 | 46 | 206 | 1.97e-13 | 67.0 |
MS.gene048193.t1 | MTR_6g065980 | 30.636 | 173 | 93 | 5 | 6 | 170 | 16 | 169 | 1.98e-13 | 67.4 |
MS.gene048193.t1 | MTR_4g024890 | 28.090 | 178 | 101 | 6 | 1 | 167 | 5 | 166 | 2.27e-13 | 67.4 |
MS.gene048193.t1 | MTR_5g057790 | 34.857 | 175 | 89 | 7 | 6 | 169 | 46 | 206 | 2.28e-13 | 67.4 |
MS.gene048193.t1 | MTR_8g062660 | 30.159 | 189 | 104 | 7 | 6 | 175 | 22 | 201 | 2.34e-13 | 67.8 |
MS.gene048193.t1 | MTR_3g011100 | 30.682 | 176 | 96 | 8 | 6 | 169 | 235 | 396 | 3.51e-13 | 67.0 |
MS.gene048193.t1 | MTR_5g097330 | 25.269 | 186 | 117 | 5 | 2 | 168 | 12 | 194 | 3.63e-13 | 67.0 |
MS.gene048193.t1 | MTR_5g007610 | 29.213 | 178 | 98 | 6 | 6 | 169 | 41 | 204 | 3.64e-13 | 67.0 |
MS.gene048193.t1 | MTR_3g007360 | 30.723 | 166 | 100 | 6 | 9 | 169 | 55 | 210 | 3.93e-13 | 66.6 |
MS.gene048193.t1 | MTR_4g030830 | 28.652 | 178 | 94 | 7 | 6 | 167 | 9 | 169 | 4.05e-13 | 66.6 |
MS.gene048193.t1 | MTR_7g078840 | 35.172 | 145 | 68 | 5 | 6 | 126 | 10 | 152 | 5.05e-13 | 66.6 |
MS.gene048193.t1 | MTR_6g465360 | 30.319 | 188 | 97 | 8 | 6 | 168 | 62 | 240 | 5.12e-13 | 65.9 |
MS.gene048193.t1 | MTR_5g069930 | 33.803 | 142 | 73 | 4 | 1 | 126 | 1 | 137 | 5.12e-13 | 66.2 |
MS.gene048193.t1 | MTR_4g129190 | 29.050 | 179 | 103 | 5 | 1 | 167 | 1 | 167 | 5.22e-13 | 66.2 |
MS.gene048193.t1 | MTR_5g057710 | 29.944 | 177 | 95 | 6 | 6 | 169 | 46 | 206 | 5.81e-13 | 66.2 |
MS.gene048193.t1 | MTR_3g083640 | 30.939 | 181 | 97 | 6 | 6 | 173 | 55 | 220 | 6.93e-13 | 66.2 |
MS.gene048193.t1 | MTR_2g021252 | 28.736 | 174 | 91 | 6 | 9 | 169 | 50 | 203 | 7.04e-13 | 65.9 |
MS.gene048193.t1 | MTR_2g021800 | 26.943 | 193 | 105 | 5 | 2 | 168 | 12 | 194 | 7.26e-13 | 65.9 |
MS.gene048193.t1 | MTR_4g031770 | 29.379 | 177 | 89 | 7 | 5 | 170 | 3 | 154 | 7.51e-13 | 65.9 |
MS.gene048193.t1 | MTR_6g070880 | 25.789 | 190 | 116 | 6 | 6 | 175 | 32 | 216 | 8.14e-13 | 65.1 |
MS.gene048193.t1 | MTR_6g071420 | 25.789 | 190 | 116 | 6 | 6 | 175 | 32 | 216 | 8.14e-13 | 65.1 |
MS.gene048193.t1 | MTR_4g019990 | 28.804 | 184 | 99 | 7 | 1 | 167 | 1 | 169 | 8.35e-13 | 65.9 |
MS.gene048193.t1 | MTR_5g011200 | 32.796 | 186 | 85 | 10 | 3 | 169 | 14 | 178 | 8.40e-13 | 65.9 |
MS.gene048193.t1 | MTR_6g086825 | 27.638 | 199 | 111 | 7 | 1 | 177 | 65 | 252 | 1.06e-12 | 65.5 |
MS.gene048193.t1 | MTR_5g096710 | 28.729 | 181 | 101 | 8 | 6 | 171 | 23 | 190 | 1.13e-12 | 65.5 |
MS.gene048193.t1 | MTR_7g079160 | 31.188 | 202 | 92 | 8 | 6 | 167 | 8 | 202 | 1.51e-12 | 65.1 |
MS.gene048193.t1 | MTR_4g023090 | 31.638 | 177 | 99 | 6 | 6 | 174 | 16 | 178 | 1.76e-12 | 64.7 |
MS.gene048193.t1 | MTR_6g007135 | 28.409 | 176 | 103 | 5 | 6 | 169 | 26 | 190 | 1.80e-12 | 64.7 |
MS.gene048193.t1 | MTR_3g013770 | 29.609 | 179 | 85 | 6 | 6 | 165 | 33 | 189 | 1.97e-12 | 64.7 |
MS.gene048193.t1 | MTR_5g046260 | 30.460 | 174 | 79 | 7 | 6 | 169 | 4 | 145 | 2.33e-12 | 64.3 |
MS.gene048193.t1 | MTR_4g014370 | 25.728 | 206 | 108 | 8 | 2 | 168 | 7 | 206 | 2.37e-12 | 64.7 |
MS.gene048193.t1 | MTR_8g064890 | 30.108 | 186 | 102 | 8 | 1 | 168 | 11 | 186 | 2.47e-12 | 64.3 |
MS.gene048193.t1 | MTR_5g057040 | 29.379 | 177 | 96 | 5 | 6 | 169 | 46 | 206 | 2.55e-12 | 64.7 |
MS.gene048193.t1 | MTR_0267s0050 | 29.348 | 184 | 110 | 6 | 1 | 171 | 1 | 177 | 3.11e-12 | 64.3 |
MS.gene048193.t1 | MTR_6g027910 | 27.222 | 180 | 106 | 7 | 9 | 171 | 12 | 183 | 3.45e-12 | 63.9 |
MS.gene048193.t1 | MTR_1g015740 | 32.353 | 136 | 76 | 2 | 6 | 127 | 8 | 141 | 3.70e-12 | 63.9 |
MS.gene048193.t1 | MTR_8g467670 | 27.624 | 181 | 102 | 6 | 6 | 168 | 14 | 183 | 4.00e-12 | 63.9 |
MS.gene048193.t1 | MTR_7g016930 | 25.731 | 171 | 108 | 5 | 2 | 168 | 12 | 167 | 4.21e-12 | 63.5 |
MS.gene048193.t1 | MTR_3g006570 | 29.545 | 176 | 101 | 7 | 6 | 172 | 21 | 182 | 4.22e-12 | 63.9 |
MS.gene048193.t1 | MTR_4g116330 | 29.121 | 182 | 95 | 6 | 2 | 170 | 19 | 179 | 4.36e-12 | 63.5 |
MS.gene048193.t1 | MTR_4g116330 | 29.121 | 182 | 95 | 6 | 2 | 170 | 19 | 179 | 4.91e-12 | 63.5 |
MS.gene048193.t1 | MTR_3g464470 | 31.214 | 173 | 96 | 7 | 2 | 167 | 3 | 159 | 6.19e-12 | 63.2 |
MS.gene048193.t1 | MTR_8g033110 | 27.895 | 190 | 103 | 8 | 1 | 170 | 9 | 184 | 6.27e-12 | 63.2 |
MS.gene048193.t1 | MTR_3g034130 | 26.857 | 175 | 103 | 3 | 6 | 171 | 9 | 167 | 6.36e-12 | 63.2 |
MS.gene048193.t1 | MTR_3g007430 | 27.976 | 168 | 102 | 6 | 9 | 169 | 46 | 201 | 7.39e-12 | 63.2 |
MS.gene048193.t1 | MTR_2g066150 | 27.429 | 175 | 101 | 7 | 6 | 168 | 12 | 172 | 7.41e-12 | 63.2 |
MS.gene048193.t1 | MTR_3g103020 | 30.460 | 174 | 93 | 5 | 6 | 170 | 20 | 174 | 8.46e-12 | 62.8 |
MS.gene048193.t1 | MTR_3g010430 | 32.184 | 174 | 95 | 8 | 6 | 170 | 36 | 195 | 8.95e-12 | 62.8 |
MS.gene048193.t1 | MTR_7g077970 | 29.947 | 187 | 97 | 7 | 6 | 167 | 7 | 184 | 1.04e-11 | 62.8 |
MS.gene048193.t1 | MTR_7g066030 | 29.508 | 183 | 98 | 8 | 6 | 167 | 21 | 193 | 1.13e-11 | 62.4 |
MS.gene048193.t1 | MTR_7g070830 | 29.032 | 186 | 101 | 7 | 6 | 167 | 21 | 199 | 1.21e-11 | 62.4 |
MS.gene048193.t1 | MTR_6g017270 | 28.492 | 179 | 97 | 6 | 6 | 167 | 9 | 173 | 1.34e-11 | 62.4 |
MS.gene048193.t1 | MTR_4g037465 | 31.319 | 182 | 92 | 8 | 6 | 171 | 21 | 185 | 1.63e-11 | 62.0 |
MS.gene048193.t1 | MTR_3g010450 | 29.518 | 166 | 93 | 7 | 10 | 169 | 1 | 148 | 1.67e-11 | 61.2 |
MS.gene048193.t1 | MTR_7g013590 | 31.325 | 166 | 97 | 7 | 9 | 170 | 39 | 191 | 1.69e-11 | 62.0 |
MS.gene048193.t1 | MTR_2g066200 | 27.027 | 185 | 106 | 5 | 2 | 168 | 8 | 181 | 1.99e-11 | 62.0 |
MS.gene048193.t1 | MTR_7g066060 | 31.034 | 174 | 106 | 4 | 6 | 168 | 23 | 193 | 2.53e-11 | 61.6 |
MS.gene048193.t1 | MTR_3g036430 | 30.909 | 165 | 86 | 6 | 6 | 170 | 20 | 156 | 2.91e-11 | 61.2 |
MS.gene048193.t1 | MTR_2g021150 | 29.947 | 187 | 100 | 10 | 6 | 179 | 14 | 182 | 3.24e-11 | 61.2 |
MS.gene048193.t1 | MTR_3g011120 | 28.649 | 185 | 103 | 8 | 1 | 168 | 9 | 181 | 3.45e-11 | 61.2 |
MS.gene048193.t1 | MTR_7g061060 | 28.261 | 184 | 99 | 6 | 6 | 170 | 13 | 182 | 3.48e-11 | 61.2 |
MS.gene048193.t1 | MTR_4g030760 | 28.495 | 186 | 92 | 8 | 9 | 177 | 76 | 237 | 4.04e-11 | 60.8 |
MS.gene048193.t1 | MTR_4g116340 | 30.539 | 167 | 93 | 8 | 6 | 170 | 36 | 181 | 4.20e-11 | 60.1 |
MS.gene048193.t1 | MTR_3g013950 | 29.189 | 185 | 111 | 6 | 1 | 171 | 1 | 179 | 4.72e-11 | 60.8 |
MS.gene048193.t1 | MTR_7g077990 | 31.429 | 140 | 72 | 4 | 6 | 126 | 17 | 151 | 4.81e-11 | 60.8 |
MS.gene048193.t1 | MTR_7g056760 | 32.117 | 137 | 74 | 7 | 6 | 127 | 23 | 155 | 4.90e-11 | 60.8 |
MS.gene048193.t1 | MTR_1g055135 | 28.889 | 180 | 101 | 5 | 6 | 177 | 13 | 173 | 5.06e-11 | 60.5 |
MS.gene048193.t1 | MTR_6g048120 | 26.519 | 181 | 107 | 6 | 6 | 169 | 36 | 207 | 5.11e-11 | 60.8 |
MS.gene048193.t1 | MTR_7g066010 | 30.556 | 180 | 100 | 7 | 6 | 167 | 21 | 193 | 5.59e-11 | 60.5 |
MS.gene048193.t1 | MTR_0649s0020 | 29.714 | 175 | 102 | 5 | 6 | 170 | 11 | 174 | 5.75e-11 | 60.5 |
MS.gene048193.t1 | MTR_3g010390 | 28.571 | 182 | 95 | 7 | 6 | 169 | 33 | 197 | 6.00e-11 | 60.5 |
MS.gene048193.t1 | MTR_4g117780 | 27.273 | 165 | 99 | 4 | 6 | 164 | 11 | 160 | 6.53e-11 | 60.5 |
MS.gene048193.t1 | MTR_3g007300 | 31.538 | 130 | 73 | 4 | 6 | 132 | 49 | 165 | 6.76e-11 | 60.1 |
MS.gene048193.t1 | MTR_7g066850 | 27.624 | 181 | 90 | 4 | 6 | 168 | 23 | 180 | 6.80e-11 | 60.5 |
MS.gene048193.t1 | MTR_1g097490 | 28.902 | 173 | 95 | 6 | 3 | 165 | 46 | 200 | 7.11e-11 | 60.1 |
MS.gene048193.t1 | MTR_1g088120 | 34.815 | 135 | 70 | 4 | 9 | 127 | 13 | 145 | 7.43e-11 | 60.1 |
MS.gene048193.t1 | MTR_4g109270 | 31.034 | 174 | 97 | 7 | 6 | 170 | 8 | 167 | 7.57e-11 | 60.1 |
MS.gene048193.t1 | MTR_2g078900 | 28.492 | 179 | 95 | 6 | 6 | 170 | 33 | 192 | 8.56e-11 | 60.1 |
MS.gene048193.t1 | MTR_1g007410 | 27.222 | 180 | 104 | 6 | 6 | 168 | 22 | 191 | 9.80e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048193.t1 | AT4G12560 | 29.762 | 168 | 99 | 5 | 6 | 169 | 4 | 156 | 3.59e-16 | 75.5 |
MS.gene048193.t1 | AT4G12560 | 29.762 | 168 | 99 | 5 | 6 | 169 | 4 | 156 | 3.59e-16 | 75.5 |
MS.gene048193.t1 | AT4G12560 | 29.762 | 168 | 99 | 5 | 6 | 169 | 4 | 156 | 3.59e-16 | 75.5 |
MS.gene048193.t1 | AT4G22390 | 29.341 | 167 | 99 | 5 | 7 | 169 | 5 | 156 | 9.35e-15 | 71.6 |
MS.gene048193.t1 | AT4G22390 | 29.341 | 167 | 99 | 5 | 7 | 169 | 5 | 156 | 1.03e-14 | 71.2 |
Find 51 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTCGATTTGGTAGATAT+TGG | 0.244692 | 2.3:-63247961 | None:intergenic |
GGATTTGTGTCGAAGGATTA+AGG | 0.273818 | 2.3:-63247940 | None:intergenic |
ATGTGATGTTTACGGGTGTT+AGG | 0.295789 | 2.3:-63248146 | None:intergenic |
GATGGAGAACGAGGAGTAAT+AGG | 0.320641 | 2.3:-63248188 | None:intergenic |
AGGATGCCTGAGAGCAATTT+CGG | 0.345910 | 2.3:-63248093 | None:intergenic |
AGCACCAACATTGCTCTTAT+CGG | 0.348918 | 2.3:+63248038 | MS.gene048193:CDS |
AAGGGATAATGTGATGTTTA+CGG | 0.350529 | 2.3:-63248154 | None:intergenic |
TTGAGAAATCATCTTCGATT+TGG | 0.351223 | 2.3:-63247971 | None:intergenic |
GTAATAGGAAGAGGGAGAAA+AGG | 0.363689 | 2.3:-63248173 | None:intergenic |
AACTGCTCCTTATGCGTTCA+CGG | 0.364330 | 2.3:+63248218 | MS.gene048193:CDS |
TCCTTATGCGTTCACGGCTT+CGG | 0.368899 | 2.3:+63248224 | MS.gene048193:CDS |
AGGGATAATGTGATGTTTAC+GGG | 0.384452 | 2.3:-63248153 | None:intergenic |
AGTTTATAATCGCCGGATAA+AGG | 0.385894 | 2.3:-63248254 | None:intergenic |
GAAGTTGTGAGAATCGATTA+TGG | 0.404310 | 2.3:-63247883 | None:intergenic |
TAATAGGAAGAGGGAGAAAA+GGG | 0.406280 | 2.3:-63248172 | None:intergenic |
ACCGAAGCCGTGAACGCATA+AGG | 0.407096 | 2.3:-63248225 | None:intergenic |
CCAGATTGCGATTTCGTTGG+CGG | 0.427544 | 2.3:-63248120 | None:intergenic |
AGCAATTTCGGCGTTGGAAA+CGG | 0.434717 | 2.3:-63248081 | None:intergenic |
TGTGATGTTTACGGGTGTTA+GGG | 0.440912 | 2.3:-63248145 | None:intergenic |
CCGCCAACGAAATCGCAATC+TGG | 0.442067 | 2.3:+63248120 | MS.gene048193:CDS |
AAGATCTCGGCGAGTATGTC+CGG | 0.446974 | 2.3:-63247801 | None:intergenic |
GCGATTTCGTTGGCGGCGTT+AGG | 0.448985 | 2.3:-63248113 | None:intergenic |
GAACGAGGAGTAATAGGAAG+AGG | 0.470462 | 2.3:-63248182 | None:intergenic |
CCTGAGAGCAATTTCGGCGT+TGG | 0.474684 | 2.3:-63248087 | None:intergenic |
ATAAACTCCTCCGAATCTCT+TGG | 0.483957 | 2.3:+63248270 | MS.gene048193:CDS |
GGCAGCCGACCGCCTTCCGC+CGG | 0.491056 | 2.3:+63247782 | MS.gene048193:CDS |
GCTCTTATCGGTTCATGTAA+CGG | 0.491720 | 2.3:+63248050 | MS.gene048193:CDS |
AAGGATTAAGGATCGATTGA+AGG | 0.495979 | 2.3:-63247928 | None:intergenic |
GGAAGGCGGTCGGCTGCCAT+TGG | 0.496546 | 2.3:-63247777 | None:intergenic |
AACGAGGAGTAATAGGAAGA+GGG | 0.510510 | 2.3:-63248181 | None:intergenic |
GAGAGACTAACCAAGAGATT+CGG | 0.512216 | 2.3:-63248280 | None:intergenic |
CCAACGCCGAAATTGCTCTC+AGG | 0.515843 | 2.3:+63248087 | MS.gene048193:CDS |
TCGGAGGAGTTTATAATCGC+CGG | 0.546909 | 2.3:-63248261 | None:intergenic |
CGCGTGAAAGGGTGGTTGAG+TGG | 0.547753 | 2.3:-63248011 | None:intergenic |
GTTCCAGATTGCGATTTCGT+TGG | 0.549130 | 2.3:-63248123 | None:intergenic |
AAGGAGCAGTTCATGTCAGA+TGG | 0.552669 | 2.3:-63248206 | None:intergenic |
TATGTCCGGCGGAAGGCGGT+CGG | 0.553897 | 2.3:-63247787 | None:intergenic |
TGAACCGATAAGAGCAATGT+TGG | 0.565475 | 2.3:-63248042 | None:intergenic |
TTGGTGCTGTTACGCGTGAA+AGG | 0.566043 | 2.3:-63248023 | None:intergenic |
CGAGTATGTCCGGCGGAAGG+CGG | 0.575156 | 2.3:-63247791 | None:intergenic |
AGATATTGGATTTGTGTCGA+AGG | 0.576356 | 2.3:-63247947 | None:intergenic |
TGGTAAGCGGGAGAAGATCT+CGG | 0.588003 | 2.3:-63247814 | None:intergenic |
AGACTAACCAAGAGATTCGG+AGG | 0.591475 | 2.3:-63248277 | None:intergenic |
CGGCGAGTATGTCCGGCGGA+AGG | 0.594596 | 2.3:-63247794 | None:intergenic |
TGGTGCTGTTACGCGTGAAA+GGG | 0.604289 | 2.3:-63248022 | None:intergenic |
TGCTGTTACGCGTGAAAGGG+TGG | 0.622819 | 2.3:-63248019 | None:intergenic |
CGGCGTTGGAAACGGCGATG+AGG | 0.663369 | 2.3:-63248073 | None:intergenic |
TTCATGTCAGATGGAGAACG+AGG | 0.664298 | 2.3:-63248197 | None:intergenic |
ATCTCGGCGAGTATGTCCGG+CGG | 0.701579 | 2.3:-63247798 | None:intergenic |
TTTCTCAAACTTCACCACTG+CGG | 0.737321 | 2.3:+63247986 | MS.gene048193:CDS |
GTGGTTGAGTGGAACCGCAG+TGG | 0.738561 | 2.3:-63248000 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAGTGATTTTGAAGTTGAT+CGG | - | chr2.3:63247860-63247879 | None:intergenic | 25.0% |
AAGGGATAATGTGATGTTTA+CGG | - | chr2.3:63248157-63248176 | None:intergenic | 30.0% | |
TTGAGAAATCATCTTCGATT+TGG | - | chr2.3:63247974-63247993 | None:intergenic | 30.0% | |
! | ATCGATTGAAGGAATTTTTG+AGG | - | chr2.3:63247920-63247939 | None:intergenic | 30.0% |
!! | ATCTTCGATTTGGTAGATAT+TGG | - | chr2.3:63247964-63247983 | None:intergenic | 30.0% |
!!! | ATTTTGAAGTTGATCGGAAT+CGG | - | chr2.3:63247854-63247873 | None:intergenic | 30.0% |
AAGGATTAAGGATCGATTGA+AGG | - | chr2.3:63247931-63247950 | None:intergenic | 35.0% | |
AGATATTGGATTTGTGTCGA+AGG | - | chr2.3:63247950-63247969 | None:intergenic | 35.0% | |
AGGGATAATGTGATGTTTAC+GGG | - | chr2.3:63248156-63248175 | None:intergenic | 35.0% | |
AGTTTATAATCGCCGGATAA+AGG | - | chr2.3:63248257-63248276 | None:intergenic | 35.0% | |
GAAGTTGTGAGAATCGATTA+TGG | - | chr2.3:63247886-63247905 | None:intergenic | 35.0% | |
TAATAGGAAGAGGGAGAAAA+GGG | - | chr2.3:63248175-63248194 | None:intergenic | 35.0% | |
! | AAGTGATTTTACTGGTAAGC+GGG | - | chr2.3:63247829-63247848 | None:intergenic | 35.0% |
! | AATCGGAGAAGTGATTTTAC+TGG | - | chr2.3:63247837-63247856 | None:intergenic | 35.0% |
! | GAAGTGATTTTACTGGTAAG+CGG | - | chr2.3:63247830-63247849 | None:intergenic | 35.0% |
!! | TTCGGTTTTGATCCTTTATC+CGG | + | chr2.3:63248242-63248261 | MS.gene048193:CDS | 35.0% |
!!! | TGAAGGAATTTTTGAGGTGA+AGG | - | chr2.3:63247914-63247933 | None:intergenic | 35.0% |
AACGAGGAGTAATAGGAAGA+GGG | - | chr2.3:63248184-63248203 | None:intergenic | 40.0% | |
AGCACCAACATTGCTCTTAT+CGG | + | chr2.3:63248038-63248057 | MS.gene048193:CDS | 40.0% | |
ATAAACTCCTCCGAATCTCT+TGG | + | chr2.3:63248270-63248289 | MS.gene048193:CDS | 40.0% | |
ATGTGATGTTTACGGGTGTT+AGG | - | chr2.3:63248149-63248168 | None:intergenic | 40.0% | |
GAGAGACTAACCAAGAGATT+CGG | - | chr2.3:63248283-63248302 | None:intergenic | 40.0% | |
GGATTTGTGTCGAAGGATTA+AGG | - | chr2.3:63247943-63247962 | None:intergenic | 40.0% | |
GTAATAGGAAGAGGGAGAAA+AGG | - | chr2.3:63248176-63248195 | None:intergenic | 40.0% | |
TGAACCGATAAGAGCAATGT+TGG | - | chr2.3:63248045-63248064 | None:intergenic | 40.0% | |
TGTGATGTTTACGGGTGTTA+GGG | - | chr2.3:63248148-63248167 | None:intergenic | 40.0% | |
TTTCTCAAACTTCACCACTG+CGG | + | chr2.3:63247986-63248005 | MS.gene048193:CDS | 40.0% | |
!! | GCTCTTATCGGTTCATGTAA+CGG | + | chr2.3:63248050-63248069 | MS.gene048193:CDS | 40.0% |
AACTGCTCCTTATGCGTTCA+CGG | + | chr2.3:63248218-63248237 | MS.gene048193:CDS | 45.0% | |
AAGGAGCAGTTCATGTCAGA+TGG | - | chr2.3:63248209-63248228 | None:intergenic | 45.0% | |
AGACTAACCAAGAGATTCGG+AGG | - | chr2.3:63248280-63248299 | None:intergenic | 45.0% | |
AGGATGCCTGAGAGCAATTT+CGG | - | chr2.3:63248096-63248115 | None:intergenic | 45.0% | |
GAACGAGGAGTAATAGGAAG+AGG | - | chr2.3:63248185-63248204 | None:intergenic | 45.0% | |
GATGGAGAACGAGGAGTAAT+AGG | - | chr2.3:63248191-63248210 | None:intergenic | 45.0% | |
GTTCCAGATTGCGATTTCGT+TGG | - | chr2.3:63248126-63248145 | None:intergenic | 45.0% | |
TCGGAGGAGTTTATAATCGC+CGG | - | chr2.3:63248264-63248283 | None:intergenic | 45.0% | |
TTCATGTCAGATGGAGAACG+AGG | - | chr2.3:63248200-63248219 | None:intergenic | 45.0% | |
! | AGCAATTTCGGCGTTGGAAA+CGG | - | chr2.3:63248084-63248103 | None:intergenic | 45.0% |
AAGATCTCGGCGAGTATGTC+CGG | - | chr2.3:63247804-63247823 | None:intergenic | 50.0% | |
CCAGATTGCGATTTCGTTGG+CGG | - | chr2.3:63248123-63248142 | None:intergenic | 50.0% | |
TCCTTATGCGTTCACGGCTT+CGG | + | chr2.3:63248224-63248243 | MS.gene048193:CDS | 50.0% | |
TGGTAAGCGGGAGAAGATCT+CGG | - | chr2.3:63247817-63247836 | None:intergenic | 50.0% | |
!! | TGGTGCTGTTACGCGTGAAA+GGG | - | chr2.3:63248025-63248044 | None:intergenic | 50.0% |
!! | TTGGTGCTGTTACGCGTGAA+AGG | - | chr2.3:63248026-63248045 | None:intergenic | 50.0% |
ACCGAAGCCGTGAACGCATA+AGG | - | chr2.3:63248228-63248247 | None:intergenic | 55.0% | |
CCAACGCCGAAATTGCTCTC+AGG | + | chr2.3:63248087-63248106 | MS.gene048193:CDS | 55.0% | |
CCGCCAACGAAATCGCAATC+TGG | + | chr2.3:63248120-63248139 | MS.gene048193:CDS | 55.0% | |
CCTGAGAGCAATTTCGGCGT+TGG | - | chr2.3:63248090-63248109 | None:intergenic | 55.0% | |
TGCTGTTACGCGTGAAAGGG+TGG | - | chr2.3:63248022-63248041 | None:intergenic | 55.0% | |
ATCTCGGCGAGTATGTCCGG+CGG | - | chr2.3:63247801-63247820 | None:intergenic | 60.0% | |
CGCGTGAAAGGGTGGTTGAG+TGG | - | chr2.3:63248014-63248033 | None:intergenic | 60.0% | |
GCGATTTCGTTGGCGGCGTT+AGG | - | chr2.3:63248116-63248135 | None:intergenic | 60.0% | |
GTGGTTGAGTGGAACCGCAG+TGG | - | chr2.3:63248003-63248022 | None:intergenic | 60.0% | |
CGAGTATGTCCGGCGGAAGG+CGG | - | chr2.3:63247794-63247813 | None:intergenic | 65.0% | |
TATGTCCGGCGGAAGGCGGT+CGG | - | chr2.3:63247790-63247809 | None:intergenic | 65.0% | |
! | CGGCGTTGGAAACGGCGATG+AGG | - | chr2.3:63248076-63248095 | None:intergenic | 65.0% |
CGGCGAGTATGTCCGGCGGA+AGG | - | chr2.3:63247797-63247816 | None:intergenic | 70.0% | |
! | GGCAGCCGACCGCCTTCCGC+CGG | + | chr2.3:63247782-63247801 | MS.gene048193:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 63247780 | 63248322 | 63247780 | ID=MS.gene048193 |
chr2.3 | mRNA | 63247780 | 63248322 | 63247780 | ID=MS.gene048193.t1;Parent=MS.gene048193 |
chr2.3 | exon | 63247780 | 63248322 | 63247780 | ID=MS.gene048193.t1.exon1;Parent=MS.gene048193.t1 |
chr2.3 | CDS | 63247780 | 63248322 | 63247780 | ID=cds.MS.gene048193.t1;Parent=MS.gene048193.t1 |
Gene Sequence |
Protein sequence |