AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048193


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048193.t1 MTR_0667s0010 90.503 179 17 0 1 179 1 179 4.08e-115 333
MS.gene048193.t1 MTR_2g426070 65.285 193 52 5 1 179 1 192 1.15e-78 239
MS.gene048193.t1 MTR_3g083010 65.816 196 49 5 1 179 1 195 4.20e-78 239
MS.gene048193.t1 MTR_2g028110 70.930 172 47 2 6 177 4 172 8.48e-78 237
MS.gene048193.t1 MTR_2g426060 70.166 181 43 6 1 172 1 179 1.91e-76 234
MS.gene048193.t1 MTR_2g425980 67.553 188 49 5 1 179 1 185 1.94e-76 234
MS.gene048193.t1 MTR_2g024100 76.250 160 37 1 21 179 22 181 1.11e-73 227
MS.gene048193.t1 MTR_2g426020 65.027 183 50 5 1 172 1 180 1.01e-72 224
MS.gene048193.t1 MTR_8g099460 67.978 178 54 2 1 176 1 177 7.05e-72 222
MS.gene048193.t1 MTR_2g028130 64.948 194 49 6 1 179 1 190 1.95e-71 221
MS.gene048193.t1 MTR_2g426090 64.865 185 53 5 1 175 1 183 8.12e-71 220
MS.gene048193.t1 MTR_2g025420 59.067 193 65 4 1 179 1 193 1.24e-70 220
MS.gene048193.t1 MTR_2g028140 65.816 196 48 6 1 179 1 194 1.76e-70 219
MS.gene048193.t1 MTR_4g070550 66.316 190 51 6 1 179 1 188 3.10e-70 218
MS.gene048193.t1 MTR_2g028160 60.825 194 57 5 1 179 1 190 4.94e-68 213
MS.gene048193.t1 MTR_2g021050 61.749 183 40 5 1 179 1 157 5.43e-64 201
MS.gene048193.t1 MTR_2g031720 61.326 181 51 6 1 177 1 166 1.66e-61 196
MS.gene048193.t1 MTR_2g031700 58.757 177 59 4 1 177 1 163 3.31e-60 189
MS.gene048193.t1 MTR_2g031640 58.989 178 58 5 1 177 1 164 9.64e-59 188
MS.gene048193.t1 MTR_1g068875 59.649 171 58 3 6 176 4 163 8.88e-57 183
MS.gene048193.t1 MTR_1g068835 58.046 174 59 4 6 177 4 165 1.07e-56 182
MS.gene048193.t1 MTR_2g031680 56.742 178 63 4 1 178 1 164 1.85e-54 177
MS.gene048193.t1 MTR_1g068905 58.025 162 56 3 6 166 4 154 9.19e-53 171
MS.gene048193.t1 MTR_2g026010 57.803 173 59 4 6 177 4 163 2.25e-52 172
MS.gene048193.t1 MTR_1g068860 58.621 174 59 4 6 177 4 166 4.97e-52 171
MS.gene048193.t1 MTR_4g006270 55.152 165 59 4 6 170 4 153 1.78e-48 162
MS.gene048193.t1 MTR_2g024110 51.176 170 66 5 6 172 4 159 6.46e-47 157
MS.gene048193.t1 MTR_2g022170 56.934 137 46 3 9 145 7 130 2.01e-43 141
MS.gene048193.t1 MTR_7g110360 45.143 175 75 5 6 170 39 202 8.41e-36 127
MS.gene048193.t1 MTR_2g025960 70.455 88 21 1 90 172 1 88 1.94e-35 126
MS.gene048193.t1 MTR_4g133170 40.000 175 91 3 6 177 4 167 5.84e-34 124
MS.gene048193.t1 MTR_5g083940 42.424 165 48 5 6 170 4 121 1.79e-27 105
MS.gene048193.t1 MTR_2g437190 52.212 113 37 4 48 155 56 156 8.97e-23 89.7
MS.gene048193.t1 MTR_2g025995 85.714 49 7 0 1 49 1 49 3.21e-20 84.7
MS.gene048193.t1 MTR_2g040050 43.137 102 47 3 69 169 16 107 1.20e-19 83.2
MS.gene048193.t1 MTR_3g034180 30.857 175 96 3 6 171 123 281 3.50e-19 84.3
MS.gene048193.t1 MTR_3g034160 30.857 175 96 3 6 171 9 167 6.09e-19 83.2
MS.gene048193.t1 MTR_4g102410 27.273 187 108 5 2 169 57 234 1.04e-17 80.1
MS.gene048193.t1 MTR_7g070440 32.418 182 93 8 9 178 10 173 1.83e-17 79.0
MS.gene048193.t1 MTR_3g014540 30.286 175 92 4 6 169 29 184 2.14e-17 79.0
MS.gene048193.t1 MTR_4g061340 32.749 171 96 6 6 169 26 184 5.80e-17 77.4
MS.gene048193.t1 MTR_3g086970 39.568 139 55 6 32 170 14 123 8.15e-17 74.3
MS.gene048193.t1 MTR_7g017040 30.168 179 98 7 6 168 16 183 1.81e-16 76.3
MS.gene048193.t1 MTR_2g021155 33.136 169 91 6 9 171 39 191 2.18e-16 76.6
MS.gene048193.t1 MTR_1g056710 32.955 176 86 7 5 169 33 187 3.17e-16 75.5
MS.gene048193.t1 MTR_6g053260 31.892 185 102 7 6 179 337 508 8.93e-16 74.7
MS.gene048193.t1 MTR_3g058470 29.670 182 97 6 6 169 37 205 9.58e-16 74.3
MS.gene048193.t1 MTR_3g014570 29.825 171 90 4 6 165 29 180 1.01e-15 73.9
MS.gene048193.t1 MTR_3g007330 30.303 165 99 4 6 167 48 199 1.31e-15 73.9
MS.gene048193.t1 MTR_5g046300 31.977 172 94 7 6 169 4 160 2.13e-15 73.2
MS.gene048193.t1 MTR_5g046290 31.977 172 94 7 6 169 4 160 2.13e-15 73.2
MS.gene048193.t1 MTR_3g006670 31.214 173 96 4 6 169 49 207 2.84e-15 72.8
MS.gene048193.t1 MTR_4g080200 30.120 166 98 4 5 169 2 150 4.52e-15 72.0
MS.gene048193.t1 MTR_5g069760 32.143 140 74 2 1 126 1 133 4.90e-15 72.0
MS.gene048193.t1 MTR_3g058440 28.889 180 100 6 5 169 34 200 6.05e-15 71.2
MS.gene048193.t1 MTR_3g058480 27.222 180 104 5 6 169 39 207 1.02e-14 70.9
MS.gene048193.t1 MTR_2g022000 28.866 194 99 7 2 168 12 193 1.05e-14 71.2
MS.gene048193.t1 MTR_8g073550 28.571 175 98 5 6 169 30 188 1.35e-14 69.7
MS.gene048193.t1 MTR_1g055070 31.148 183 96 7 5 169 48 218 2.24e-14 70.5
MS.gene048193.t1 MTR_3g009310 31.073 177 94 5 6 169 42 203 4.29e-14 69.7
MS.gene048193.t1 MTR_7g078900 31.937 191 94 9 9 172 15 196 4.64e-14 69.3
MS.gene048193.t1 MTR_7g077070 31.217 189 93 7 6 167 16 194 4.74e-14 69.3
MS.gene048193.t1 MTR_4g013180 32.308 130 73 5 6 126 11 134 5.26e-14 69.3
MS.gene048193.t1 MTR_8g039500 27.684 177 106 4 2 168 8 172 6.04e-14 68.9
MS.gene048193.t1 MTR_3g007410 33.929 168 92 9 9 169 55 210 7.71e-14 68.9
MS.gene048193.t1 MTR_8g013010 28.161 174 102 5 6 170 54 213 8.91e-14 68.2
MS.gene048193.t1 MTR_1g029650 32.867 143 70 5 6 125 8 147 1.02e-13 68.6
MS.gene048193.t1 MTR_3g024040 33.537 164 84 8 12 169 37 181 1.14e-13 68.2
MS.gene048193.t1 MTR_3g036290 30.337 178 88 7 6 169 22 177 1.27e-13 68.2
MS.gene048193.t1 MTR_2g029990 30.857 175 92 7 7 169 52 209 1.29e-13 68.2
MS.gene048193.t1 MTR_5g097220 28.947 190 100 9 2 168 9 186 1.66e-13 67.8
MS.gene048193.t1 MTR_6g053240 29.688 192 102 8 6 179 28 204 1.70e-13 67.8
MS.gene048193.t1 MTR_2g021190 32.571 175 89 7 6 169 21 177 1.72e-13 67.8
MS.gene048193.t1 MTR_5g096630 29.508 183 101 9 6 169 18 191 1.87e-13 67.8
MS.gene048193.t1 MTR_5g057643 34.857 175 89 7 6 169 46 206 1.97e-13 67.0
MS.gene048193.t1 MTR_6g065980 30.636 173 93 5 6 170 16 169 1.98e-13 67.4
MS.gene048193.t1 MTR_4g024890 28.090 178 101 6 1 167 5 166 2.27e-13 67.4
MS.gene048193.t1 MTR_5g057790 34.857 175 89 7 6 169 46 206 2.28e-13 67.4
MS.gene048193.t1 MTR_8g062660 30.159 189 104 7 6 175 22 201 2.34e-13 67.8
MS.gene048193.t1 MTR_3g011100 30.682 176 96 8 6 169 235 396 3.51e-13 67.0
MS.gene048193.t1 MTR_5g097330 25.269 186 117 5 2 168 12 194 3.63e-13 67.0
MS.gene048193.t1 MTR_5g007610 29.213 178 98 6 6 169 41 204 3.64e-13 67.0
MS.gene048193.t1 MTR_3g007360 30.723 166 100 6 9 169 55 210 3.93e-13 66.6
MS.gene048193.t1 MTR_4g030830 28.652 178 94 7 6 167 9 169 4.05e-13 66.6
MS.gene048193.t1 MTR_7g078840 35.172 145 68 5 6 126 10 152 5.05e-13 66.6
MS.gene048193.t1 MTR_6g465360 30.319 188 97 8 6 168 62 240 5.12e-13 65.9
MS.gene048193.t1 MTR_5g069930 33.803 142 73 4 1 126 1 137 5.12e-13 66.2
MS.gene048193.t1 MTR_4g129190 29.050 179 103 5 1 167 1 167 5.22e-13 66.2
MS.gene048193.t1 MTR_5g057710 29.944 177 95 6 6 169 46 206 5.81e-13 66.2
MS.gene048193.t1 MTR_3g083640 30.939 181 97 6 6 173 55 220 6.93e-13 66.2
MS.gene048193.t1 MTR_2g021252 28.736 174 91 6 9 169 50 203 7.04e-13 65.9
MS.gene048193.t1 MTR_2g021800 26.943 193 105 5 2 168 12 194 7.26e-13 65.9
MS.gene048193.t1 MTR_4g031770 29.379 177 89 7 5 170 3 154 7.51e-13 65.9
MS.gene048193.t1 MTR_6g070880 25.789 190 116 6 6 175 32 216 8.14e-13 65.1
MS.gene048193.t1 MTR_6g071420 25.789 190 116 6 6 175 32 216 8.14e-13 65.1
MS.gene048193.t1 MTR_4g019990 28.804 184 99 7 1 167 1 169 8.35e-13 65.9
MS.gene048193.t1 MTR_5g011200 32.796 186 85 10 3 169 14 178 8.40e-13 65.9
MS.gene048193.t1 MTR_6g086825 27.638 199 111 7 1 177 65 252 1.06e-12 65.5
MS.gene048193.t1 MTR_5g096710 28.729 181 101 8 6 171 23 190 1.13e-12 65.5
MS.gene048193.t1 MTR_7g079160 31.188 202 92 8 6 167 8 202 1.51e-12 65.1
MS.gene048193.t1 MTR_4g023090 31.638 177 99 6 6 174 16 178 1.76e-12 64.7
MS.gene048193.t1 MTR_6g007135 28.409 176 103 5 6 169 26 190 1.80e-12 64.7
MS.gene048193.t1 MTR_3g013770 29.609 179 85 6 6 165 33 189 1.97e-12 64.7
MS.gene048193.t1 MTR_5g046260 30.460 174 79 7 6 169 4 145 2.33e-12 64.3
MS.gene048193.t1 MTR_4g014370 25.728 206 108 8 2 168 7 206 2.37e-12 64.7
MS.gene048193.t1 MTR_8g064890 30.108 186 102 8 1 168 11 186 2.47e-12 64.3
MS.gene048193.t1 MTR_5g057040 29.379 177 96 5 6 169 46 206 2.55e-12 64.7
MS.gene048193.t1 MTR_0267s0050 29.348 184 110 6 1 171 1 177 3.11e-12 64.3
MS.gene048193.t1 MTR_6g027910 27.222 180 106 7 9 171 12 183 3.45e-12 63.9
MS.gene048193.t1 MTR_1g015740 32.353 136 76 2 6 127 8 141 3.70e-12 63.9
MS.gene048193.t1 MTR_8g467670 27.624 181 102 6 6 168 14 183 4.00e-12 63.9
MS.gene048193.t1 MTR_7g016930 25.731 171 108 5 2 168 12 167 4.21e-12 63.5
MS.gene048193.t1 MTR_3g006570 29.545 176 101 7 6 172 21 182 4.22e-12 63.9
MS.gene048193.t1 MTR_4g116330 29.121 182 95 6 2 170 19 179 4.36e-12 63.5
MS.gene048193.t1 MTR_4g116330 29.121 182 95 6 2 170 19 179 4.91e-12 63.5
MS.gene048193.t1 MTR_3g464470 31.214 173 96 7 2 167 3 159 6.19e-12 63.2
MS.gene048193.t1 MTR_8g033110 27.895 190 103 8 1 170 9 184 6.27e-12 63.2
MS.gene048193.t1 MTR_3g034130 26.857 175 103 3 6 171 9 167 6.36e-12 63.2
MS.gene048193.t1 MTR_3g007430 27.976 168 102 6 9 169 46 201 7.39e-12 63.2
MS.gene048193.t1 MTR_2g066150 27.429 175 101 7 6 168 12 172 7.41e-12 63.2
MS.gene048193.t1 MTR_3g103020 30.460 174 93 5 6 170 20 174 8.46e-12 62.8
MS.gene048193.t1 MTR_3g010430 32.184 174 95 8 6 170 36 195 8.95e-12 62.8
MS.gene048193.t1 MTR_7g077970 29.947 187 97 7 6 167 7 184 1.04e-11 62.8
MS.gene048193.t1 MTR_7g066030 29.508 183 98 8 6 167 21 193 1.13e-11 62.4
MS.gene048193.t1 MTR_7g070830 29.032 186 101 7 6 167 21 199 1.21e-11 62.4
MS.gene048193.t1 MTR_6g017270 28.492 179 97 6 6 167 9 173 1.34e-11 62.4
MS.gene048193.t1 MTR_4g037465 31.319 182 92 8 6 171 21 185 1.63e-11 62.0
MS.gene048193.t1 MTR_3g010450 29.518 166 93 7 10 169 1 148 1.67e-11 61.2
MS.gene048193.t1 MTR_7g013590 31.325 166 97 7 9 170 39 191 1.69e-11 62.0
MS.gene048193.t1 MTR_2g066200 27.027 185 106 5 2 168 8 181 1.99e-11 62.0
MS.gene048193.t1 MTR_7g066060 31.034 174 106 4 6 168 23 193 2.53e-11 61.6
MS.gene048193.t1 MTR_3g036430 30.909 165 86 6 6 170 20 156 2.91e-11 61.2
MS.gene048193.t1 MTR_2g021150 29.947 187 100 10 6 179 14 182 3.24e-11 61.2
MS.gene048193.t1 MTR_3g011120 28.649 185 103 8 1 168 9 181 3.45e-11 61.2
MS.gene048193.t1 MTR_7g061060 28.261 184 99 6 6 170 13 182 3.48e-11 61.2
MS.gene048193.t1 MTR_4g030760 28.495 186 92 8 9 177 76 237 4.04e-11 60.8
MS.gene048193.t1 MTR_4g116340 30.539 167 93 8 6 170 36 181 4.20e-11 60.1
MS.gene048193.t1 MTR_3g013950 29.189 185 111 6 1 171 1 179 4.72e-11 60.8
MS.gene048193.t1 MTR_7g077990 31.429 140 72 4 6 126 17 151 4.81e-11 60.8
MS.gene048193.t1 MTR_7g056760 32.117 137 74 7 6 127 23 155 4.90e-11 60.8
MS.gene048193.t1 MTR_1g055135 28.889 180 101 5 6 177 13 173 5.06e-11 60.5
MS.gene048193.t1 MTR_6g048120 26.519 181 107 6 6 169 36 207 5.11e-11 60.8
MS.gene048193.t1 MTR_7g066010 30.556 180 100 7 6 167 21 193 5.59e-11 60.5
MS.gene048193.t1 MTR_0649s0020 29.714 175 102 5 6 170 11 174 5.75e-11 60.5
MS.gene048193.t1 MTR_3g010390 28.571 182 95 7 6 169 33 197 6.00e-11 60.5
MS.gene048193.t1 MTR_4g117780 27.273 165 99 4 6 164 11 160 6.53e-11 60.5
MS.gene048193.t1 MTR_3g007300 31.538 130 73 4 6 132 49 165 6.76e-11 60.1
MS.gene048193.t1 MTR_7g066850 27.624 181 90 4 6 168 23 180 6.80e-11 60.5
MS.gene048193.t1 MTR_1g097490 28.902 173 95 6 3 165 46 200 7.11e-11 60.1
MS.gene048193.t1 MTR_1g088120 34.815 135 70 4 9 127 13 145 7.43e-11 60.1
MS.gene048193.t1 MTR_4g109270 31.034 174 97 7 6 170 8 167 7.57e-11 60.1
MS.gene048193.t1 MTR_2g078900 28.492 179 95 6 6 170 33 192 8.56e-11 60.1
MS.gene048193.t1 MTR_1g007410 27.222 180 104 6 6 168 22 191 9.80e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048193.t1 AT4G12560 29.762 168 99 5 6 169 4 156 3.59e-16 75.5
MS.gene048193.t1 AT4G12560 29.762 168 99 5 6 169 4 156 3.59e-16 75.5
MS.gene048193.t1 AT4G12560 29.762 168 99 5 6 169 4 156 3.59e-16 75.5
MS.gene048193.t1 AT4G22390 29.341 167 99 5 7 169 5 156 9.35e-15 71.6
MS.gene048193.t1 AT4G22390 29.341 167 99 5 7 169 5 156 1.03e-14 71.2

Find 51 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCGATTTGGTAGATAT+TGG 0.244692 2.3:-63247961 None:intergenic
GGATTTGTGTCGAAGGATTA+AGG 0.273818 2.3:-63247940 None:intergenic
ATGTGATGTTTACGGGTGTT+AGG 0.295789 2.3:-63248146 None:intergenic
GATGGAGAACGAGGAGTAAT+AGG 0.320641 2.3:-63248188 None:intergenic
AGGATGCCTGAGAGCAATTT+CGG 0.345910 2.3:-63248093 None:intergenic
AGCACCAACATTGCTCTTAT+CGG 0.348918 2.3:+63248038 MS.gene048193:CDS
AAGGGATAATGTGATGTTTA+CGG 0.350529 2.3:-63248154 None:intergenic
TTGAGAAATCATCTTCGATT+TGG 0.351223 2.3:-63247971 None:intergenic
GTAATAGGAAGAGGGAGAAA+AGG 0.363689 2.3:-63248173 None:intergenic
AACTGCTCCTTATGCGTTCA+CGG 0.364330 2.3:+63248218 MS.gene048193:CDS
TCCTTATGCGTTCACGGCTT+CGG 0.368899 2.3:+63248224 MS.gene048193:CDS
AGGGATAATGTGATGTTTAC+GGG 0.384452 2.3:-63248153 None:intergenic
AGTTTATAATCGCCGGATAA+AGG 0.385894 2.3:-63248254 None:intergenic
GAAGTTGTGAGAATCGATTA+TGG 0.404310 2.3:-63247883 None:intergenic
TAATAGGAAGAGGGAGAAAA+GGG 0.406280 2.3:-63248172 None:intergenic
ACCGAAGCCGTGAACGCATA+AGG 0.407096 2.3:-63248225 None:intergenic
CCAGATTGCGATTTCGTTGG+CGG 0.427544 2.3:-63248120 None:intergenic
AGCAATTTCGGCGTTGGAAA+CGG 0.434717 2.3:-63248081 None:intergenic
TGTGATGTTTACGGGTGTTA+GGG 0.440912 2.3:-63248145 None:intergenic
CCGCCAACGAAATCGCAATC+TGG 0.442067 2.3:+63248120 MS.gene048193:CDS
AAGATCTCGGCGAGTATGTC+CGG 0.446974 2.3:-63247801 None:intergenic
GCGATTTCGTTGGCGGCGTT+AGG 0.448985 2.3:-63248113 None:intergenic
GAACGAGGAGTAATAGGAAG+AGG 0.470462 2.3:-63248182 None:intergenic
CCTGAGAGCAATTTCGGCGT+TGG 0.474684 2.3:-63248087 None:intergenic
ATAAACTCCTCCGAATCTCT+TGG 0.483957 2.3:+63248270 MS.gene048193:CDS
GGCAGCCGACCGCCTTCCGC+CGG 0.491056 2.3:+63247782 MS.gene048193:CDS
GCTCTTATCGGTTCATGTAA+CGG 0.491720 2.3:+63248050 MS.gene048193:CDS
AAGGATTAAGGATCGATTGA+AGG 0.495979 2.3:-63247928 None:intergenic
GGAAGGCGGTCGGCTGCCAT+TGG 0.496546 2.3:-63247777 None:intergenic
AACGAGGAGTAATAGGAAGA+GGG 0.510510 2.3:-63248181 None:intergenic
GAGAGACTAACCAAGAGATT+CGG 0.512216 2.3:-63248280 None:intergenic
CCAACGCCGAAATTGCTCTC+AGG 0.515843 2.3:+63248087 MS.gene048193:CDS
TCGGAGGAGTTTATAATCGC+CGG 0.546909 2.3:-63248261 None:intergenic
CGCGTGAAAGGGTGGTTGAG+TGG 0.547753 2.3:-63248011 None:intergenic
GTTCCAGATTGCGATTTCGT+TGG 0.549130 2.3:-63248123 None:intergenic
AAGGAGCAGTTCATGTCAGA+TGG 0.552669 2.3:-63248206 None:intergenic
TATGTCCGGCGGAAGGCGGT+CGG 0.553897 2.3:-63247787 None:intergenic
TGAACCGATAAGAGCAATGT+TGG 0.565475 2.3:-63248042 None:intergenic
TTGGTGCTGTTACGCGTGAA+AGG 0.566043 2.3:-63248023 None:intergenic
CGAGTATGTCCGGCGGAAGG+CGG 0.575156 2.3:-63247791 None:intergenic
AGATATTGGATTTGTGTCGA+AGG 0.576356 2.3:-63247947 None:intergenic
TGGTAAGCGGGAGAAGATCT+CGG 0.588003 2.3:-63247814 None:intergenic
AGACTAACCAAGAGATTCGG+AGG 0.591475 2.3:-63248277 None:intergenic
CGGCGAGTATGTCCGGCGGA+AGG 0.594596 2.3:-63247794 None:intergenic
TGGTGCTGTTACGCGTGAAA+GGG 0.604289 2.3:-63248022 None:intergenic
TGCTGTTACGCGTGAAAGGG+TGG 0.622819 2.3:-63248019 None:intergenic
CGGCGTTGGAAACGGCGATG+AGG 0.663369 2.3:-63248073 None:intergenic
TTCATGTCAGATGGAGAACG+AGG 0.664298 2.3:-63248197 None:intergenic
ATCTCGGCGAGTATGTCCGG+CGG 0.701579 2.3:-63247798 None:intergenic
TTTCTCAAACTTCACCACTG+CGG 0.737321 2.3:+63247986 MS.gene048193:CDS
GTGGTTGAGTGGAACCGCAG+TGG 0.738561 2.3:-63248000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTGATTTTGAAGTTGAT+CGG - chr2.3:63247860-63247879 None:intergenic 25.0%
AAGGGATAATGTGATGTTTA+CGG - chr2.3:63248157-63248176 None:intergenic 30.0%
TTGAGAAATCATCTTCGATT+TGG - chr2.3:63247974-63247993 None:intergenic 30.0%
! ATCGATTGAAGGAATTTTTG+AGG - chr2.3:63247920-63247939 None:intergenic 30.0%
!! ATCTTCGATTTGGTAGATAT+TGG - chr2.3:63247964-63247983 None:intergenic 30.0%
!!! ATTTTGAAGTTGATCGGAAT+CGG - chr2.3:63247854-63247873 None:intergenic 30.0%
AAGGATTAAGGATCGATTGA+AGG - chr2.3:63247931-63247950 None:intergenic 35.0%
AGATATTGGATTTGTGTCGA+AGG - chr2.3:63247950-63247969 None:intergenic 35.0%
AGGGATAATGTGATGTTTAC+GGG - chr2.3:63248156-63248175 None:intergenic 35.0%
AGTTTATAATCGCCGGATAA+AGG - chr2.3:63248257-63248276 None:intergenic 35.0%
GAAGTTGTGAGAATCGATTA+TGG - chr2.3:63247886-63247905 None:intergenic 35.0%
TAATAGGAAGAGGGAGAAAA+GGG - chr2.3:63248175-63248194 None:intergenic 35.0%
! AAGTGATTTTACTGGTAAGC+GGG - chr2.3:63247829-63247848 None:intergenic 35.0%
! AATCGGAGAAGTGATTTTAC+TGG - chr2.3:63247837-63247856 None:intergenic 35.0%
! GAAGTGATTTTACTGGTAAG+CGG - chr2.3:63247830-63247849 None:intergenic 35.0%
!! TTCGGTTTTGATCCTTTATC+CGG + chr2.3:63248242-63248261 MS.gene048193:CDS 35.0%
!!! TGAAGGAATTTTTGAGGTGA+AGG - chr2.3:63247914-63247933 None:intergenic 35.0%
AACGAGGAGTAATAGGAAGA+GGG - chr2.3:63248184-63248203 None:intergenic 40.0%
AGCACCAACATTGCTCTTAT+CGG + chr2.3:63248038-63248057 MS.gene048193:CDS 40.0%
ATAAACTCCTCCGAATCTCT+TGG + chr2.3:63248270-63248289 MS.gene048193:CDS 40.0%
ATGTGATGTTTACGGGTGTT+AGG - chr2.3:63248149-63248168 None:intergenic 40.0%
GAGAGACTAACCAAGAGATT+CGG - chr2.3:63248283-63248302 None:intergenic 40.0%
GGATTTGTGTCGAAGGATTA+AGG - chr2.3:63247943-63247962 None:intergenic 40.0%
GTAATAGGAAGAGGGAGAAA+AGG - chr2.3:63248176-63248195 None:intergenic 40.0%
TGAACCGATAAGAGCAATGT+TGG - chr2.3:63248045-63248064 None:intergenic 40.0%
TGTGATGTTTACGGGTGTTA+GGG - chr2.3:63248148-63248167 None:intergenic 40.0%
TTTCTCAAACTTCACCACTG+CGG + chr2.3:63247986-63248005 MS.gene048193:CDS 40.0%
!! GCTCTTATCGGTTCATGTAA+CGG + chr2.3:63248050-63248069 MS.gene048193:CDS 40.0%
AACTGCTCCTTATGCGTTCA+CGG + chr2.3:63248218-63248237 MS.gene048193:CDS 45.0%
AAGGAGCAGTTCATGTCAGA+TGG - chr2.3:63248209-63248228 None:intergenic 45.0%
AGACTAACCAAGAGATTCGG+AGG - chr2.3:63248280-63248299 None:intergenic 45.0%
AGGATGCCTGAGAGCAATTT+CGG - chr2.3:63248096-63248115 None:intergenic 45.0%
GAACGAGGAGTAATAGGAAG+AGG - chr2.3:63248185-63248204 None:intergenic 45.0%
GATGGAGAACGAGGAGTAAT+AGG - chr2.3:63248191-63248210 None:intergenic 45.0%
GTTCCAGATTGCGATTTCGT+TGG - chr2.3:63248126-63248145 None:intergenic 45.0%
TCGGAGGAGTTTATAATCGC+CGG - chr2.3:63248264-63248283 None:intergenic 45.0%
TTCATGTCAGATGGAGAACG+AGG - chr2.3:63248200-63248219 None:intergenic 45.0%
! AGCAATTTCGGCGTTGGAAA+CGG - chr2.3:63248084-63248103 None:intergenic 45.0%
AAGATCTCGGCGAGTATGTC+CGG - chr2.3:63247804-63247823 None:intergenic 50.0%
CCAGATTGCGATTTCGTTGG+CGG - chr2.3:63248123-63248142 None:intergenic 50.0%
TCCTTATGCGTTCACGGCTT+CGG + chr2.3:63248224-63248243 MS.gene048193:CDS 50.0%
TGGTAAGCGGGAGAAGATCT+CGG - chr2.3:63247817-63247836 None:intergenic 50.0%
!! TGGTGCTGTTACGCGTGAAA+GGG - chr2.3:63248025-63248044 None:intergenic 50.0%
!! TTGGTGCTGTTACGCGTGAA+AGG - chr2.3:63248026-63248045 None:intergenic 50.0%
ACCGAAGCCGTGAACGCATA+AGG - chr2.3:63248228-63248247 None:intergenic 55.0%
CCAACGCCGAAATTGCTCTC+AGG + chr2.3:63248087-63248106 MS.gene048193:CDS 55.0%
CCGCCAACGAAATCGCAATC+TGG + chr2.3:63248120-63248139 MS.gene048193:CDS 55.0%
CCTGAGAGCAATTTCGGCGT+TGG - chr2.3:63248090-63248109 None:intergenic 55.0%
TGCTGTTACGCGTGAAAGGG+TGG - chr2.3:63248022-63248041 None:intergenic 55.0%
ATCTCGGCGAGTATGTCCGG+CGG - chr2.3:63247801-63247820 None:intergenic 60.0%
CGCGTGAAAGGGTGGTTGAG+TGG - chr2.3:63248014-63248033 None:intergenic 60.0%
GCGATTTCGTTGGCGGCGTT+AGG - chr2.3:63248116-63248135 None:intergenic 60.0%
GTGGTTGAGTGGAACCGCAG+TGG - chr2.3:63248003-63248022 None:intergenic 60.0%
CGAGTATGTCCGGCGGAAGG+CGG - chr2.3:63247794-63247813 None:intergenic 65.0%
TATGTCCGGCGGAAGGCGGT+CGG - chr2.3:63247790-63247809 None:intergenic 65.0%
! CGGCGTTGGAAACGGCGATG+AGG - chr2.3:63248076-63248095 None:intergenic 65.0%
CGGCGAGTATGTCCGGCGGA+AGG - chr2.3:63247797-63247816 None:intergenic 70.0%
! GGCAGCCGACCGCCTTCCGC+CGG + chr2.3:63247782-63247801 MS.gene048193:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 63247780 63248322 63247780 ID=MS.gene048193
chr2.3 mRNA 63247780 63248322 63247780 ID=MS.gene048193.t1;Parent=MS.gene048193
chr2.3 exon 63247780 63248322 63247780 ID=MS.gene048193.t1.exon1;Parent=MS.gene048193.t1
chr2.3 CDS 63247780 63248322 63247780 ID=cds.MS.gene048193.t1;Parent=MS.gene048193.t1
Gene Sequence

>MS.gene048193

ATGGCAGCCGACCGCCTTCCGCCGGACATACTCGCCGAGATCTTCTCCCGCTTACCAGTAAAATCACTTCTCCGATTCCGATCAACTTCAAAATCACTTAAATCCATAATCGATTCTCACAACTTCATCAACCTTCACCTCAAAAATTCCTTCAATCGATCCTTAATCCTTCGACACAAATCCAATATCTACCAAATCGAAGATGATTTCTCAAACTTCACCACTGCGGTTCCACTCAACCACCCTTTCACGCGTAACAGCACCAACATTGCTCTTATCGGTTCATGTAACGGCCTCATCGCCGTTTCCAACGCCGAAATTGCTCTCAGGCATCCTAACGCCGCCAACGAAATCGCAATCTGGAACCCTAACACCCGTAAACATCACATTATCCCTTTTCTCCCTCTTCCTATTACTCCTCGTTCTCCATCTGACATGAACTGCTCCTTATGCGTTCACGGCTTCGGTTTTGATCCTTTATCCGGCGATTATAAACTCCTCCGAATCTCTTGGTTAGTCTCTCCACAAAACTTTTTTTTATGA

Protein sequence

>MS.gene048193.t1

MAADRLPPDILAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHLKNSFNRSLILRHKSNIYQIEDDFSNFTTAVPLNHPFTRNSTNIALIGSCNGLIAVSNAEIALRHPNAANEIAIWNPNTRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLSGDYKLLRISWLVSPQNFFL