Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96448.t1 | XP_013466878.1 | 84.8 | 355 | 29 | 6 | 1 | 330 | 46 | 400 | 1.60E-168 | 602.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96448.t1 | Q9LIR8 | 25.8 | 209 | 135 | 8 | 63 | 266 | 111 | 304 | 2.4e-11 | 71.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96448.t1 | A0A072VFZ3 | 84.8 | 355 | 29 | 6 | 1 | 330 | 46 | 400 | 1.2e-168 | 602.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96448.t1 | MTR_1g037540 | 85.070 | 355 | 28 | 6 | 1 | 330 | 46 | 400 | 0.0 | 592 |
MS.gene96448.t1 | MTR_1g022200 | 46.429 | 280 | 125 | 13 | 66 | 331 | 102 | 370 | 2.20e-58 | 192 |
MS.gene96448.t1 | MTR_4g080200 | 40.741 | 297 | 143 | 13 | 54 | 330 | 66 | 349 | 2.54e-51 | 174 |
MS.gene96448.t1 | MTR_1g023400 | 43.525 | 278 | 128 | 13 | 65 | 330 | 92 | 352 | 2.71e-51 | 174 |
MS.gene96448.t1 | MTR_1g009110 | 38.596 | 285 | 142 | 11 | 63 | 331 | 112 | 379 | 3.58e-47 | 163 |
MS.gene96448.t1 | MTR_1g023430 | 50.000 | 136 | 61 | 5 | 197 | 331 | 44 | 173 | 1.28e-29 | 112 |
MS.gene96448.t1 | MTR_1g008000 | 36.559 | 279 | 114 | 17 | 65 | 331 | 42 | 269 | 1.86e-29 | 114 |
MS.gene96448.t1 | MTR_1g022105 | 34.426 | 244 | 98 | 11 | 65 | 301 | 123 | 311 | 4.53e-26 | 106 |
MS.gene96448.t1 | MTR_1g024125 | 43.966 | 116 | 61 | 4 | 198 | 311 | 38 | 151 | 1.73e-20 | 87.0 |
MS.gene96448.t1 | MTR_2g034700 | 31.381 | 239 | 131 | 11 | 61 | 288 | 116 | 332 | 1.33e-16 | 80.1 |
MS.gene96448.t1 | MTR_0129s0070 | 29.600 | 250 | 138 | 13 | 69 | 293 | 123 | 359 | 2.58e-14 | 73.6 |
MS.gene96448.t1 | MTR_7g079640 | 27.165 | 254 | 149 | 11 | 69 | 308 | 122 | 353 | 7.07e-14 | 72.0 |
MS.gene96448.t1 | MTR_0129s0120 | 29.600 | 250 | 138 | 13 | 69 | 293 | 123 | 359 | 1.07e-13 | 71.6 |
MS.gene96448.t1 | MTR_4g102410 | 27.523 | 218 | 127 | 9 | 69 | 261 | 171 | 382 | 7.68e-13 | 69.3 |
MS.gene96448.t1 | MTR_7g069550 | 27.203 | 261 | 138 | 12 | 66 | 293 | 123 | 364 | 9.36e-13 | 68.9 |
MS.gene96448.t1 | MTR_3g013740 | 24.812 | 266 | 150 | 13 | 66 | 305 | 149 | 390 | 6.86e-12 | 66.2 |
MS.gene96448.t1 | MTR_8g063350 | 28.326 | 233 | 139 | 10 | 70 | 287 | 81 | 300 | 8.57e-12 | 65.9 |
MS.gene96448.t1 | MTR_5g059430 | 24.549 | 277 | 177 | 10 | 66 | 321 | 151 | 416 | 1.30e-11 | 65.5 |
MS.gene96448.t1 | MTR_7g016930 | 30.542 | 203 | 109 | 10 | 53 | 236 | 90 | 279 | 3.05e-11 | 63.9 |
MS.gene96448.t1 | MTR_0831s0010 | 28.177 | 181 | 99 | 7 | 53 | 214 | 132 | 300 | 4.07e-11 | 63.9 |
MS.gene96448.t1 | MTR_3g011120 | 29.675 | 246 | 135 | 16 | 69 | 297 | 122 | 346 | 4.48e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96448.t1 | AT3G17530 | 24.651 | 215 | 147 | 7 | 44 | 255 | 81 | 283 | 7.85e-11 | 63.2 |
MS.gene96448.t1 | AT5G42460 | 26.582 | 237 | 139 | 13 | 67 | 288 | 112 | 328 | 7.93e-11 | 63.2 |
Find 79 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTCCATCCATTTAATTTA+TGG | 0.124102 | 1.2:+22453150 | None:intergenic |
AAATACAACATTCTTGTTAA+TGG | 0.179334 | 1.2:-22453383 | MS.gene96448:CDS |
GTATGATCGGAATGAGAATT+TGG | 0.191400 | 1.2:-22453178 | MS.gene96448:CDS |
GGCATTTATCATTGGATTAC+AGG | 0.202107 | 1.2:-22453362 | MS.gene96448:CDS |
TGAAACAAAATTGTATAATT+TGG | 0.231697 | 1.2:+22453130 | None:intergenic |
ATAACCCAAGCTTAATTCTT+TGG | 0.231708 | 1.2:-22453670 | MS.gene96448:CDS |
TGGGTCATCCATAAATTAAA+TGG | 0.273652 | 1.2:-22453158 | MS.gene96448:CDS |
AGAGCTTGTCATTGTGGTTA+TGG | 0.279029 | 1.2:+22453822 | None:intergenic |
CTAGAATACTTGATTGGTTT+CGG | 0.305996 | 1.2:-22453590 | MS.gene96448:CDS |
GTTGTATTTGTTAGGTCGTT+TGG | 0.313615 | 1.2:+22453397 | None:intergenic |
ACACGTTTGGCTTCGGAGTT+TGG | 0.314559 | 1.2:-22453260 | MS.gene96448:CDS |
GAGCTTGTCATTGTGGTTAT+GGG | 0.333567 | 1.2:+22453823 | None:intergenic |
TGGTATACTTGACGCTTTCT+TGG | 0.344842 | 1.2:-22452970 | MS.gene96448:CDS |
ACAAGAATGTTGTATTTGTT+AGG | 0.356694 | 1.2:+22453389 | None:intergenic |
GAAGCATTAGGTGAGTTTCT+AGG | 0.362538 | 1.2:+22453774 | None:intergenic |
TCCTATCACACGTTTGGCTT+CGG | 0.382337 | 1.2:-22453267 | MS.gene96448:CDS |
ATTAATCTAGAATACTTGAT+TGG | 0.389689 | 1.2:-22453596 | MS.gene96448:CDS |
TACAATTTGTTTATTCGTAT+GGG | 0.392879 | 1.2:+22453731 | None:intergenic |
TTGTTAATGGCATTTATCAT+TGG | 0.396640 | 1.2:-22453370 | MS.gene96448:CDS |
CCGGAGGAAGAGTAGGGTTA+TGG | 0.409215 | 1.2:+22453444 | None:intergenic |
CAAGTATTCTAGATTAATAT+AGG | 0.416865 | 1.2:+22453601 | None:intergenic |
TTAATATAGGAGGCTGGATG+TGG | 0.427563 | 1.2:+22453614 | None:intergenic |
CACGGGTCCTATCACACGTT+TGG | 0.429407 | 1.2:-22453273 | MS.gene96448:CDS |
CAGTTTCAAATTGTTCTACA+TGG | 0.444058 | 1.2:-22452990 | MS.gene96448:CDS |
TATCGCATGGTGGCTTGATC+CGG | 0.450483 | 1.2:+22453425 | None:intergenic |
GTACAATTTGTTTATTCGTA+TGG | 0.452348 | 1.2:+22453730 | None:intergenic |
TTTGGAAAGAGAGAAGCATT+AGG | 0.452858 | 1.2:+22453762 | None:intergenic |
TCCGAAGCCAAACGTGTGAT+AGG | 0.463322 | 1.2:+22453266 | None:intergenic |
TATGATCGGAATGAGAATTT+GGG | 0.463772 | 1.2:-22453177 | MS.gene96448:CDS |
GGTGGTCATCGTTAGACATA+TGG | 0.465141 | 1.2:+22453894 | None:intergenic |
GGTTCCAAAGAATTAAGCTT+GGG | 0.470207 | 1.2:+22453666 | None:intergenic |
GATAAACATGCTATTTGCAA+GGG | 0.475366 | 1.2:-22453092 | MS.gene96448:CDS |
TAATATAGGAGGCTGGATGT+GGG | 0.493058 | 1.2:+22453615 | None:intergenic |
GCTATTTGCAAGGGGAAGAA+TGG | 0.493846 | 1.2:-22453083 | MS.gene96448:CDS |
CCATAACCCTACTCTTCCTC+CGG | 0.506484 | 1.2:-22453444 | MS.gene96448:CDS |
GAAATCAAAGCAGAGAATGA+TGG | 0.509070 | 1.2:+22453319 | None:intergenic |
ATTGGTTAATGATCATGAAA+TGG | 0.512572 | 1.2:+22453870 | None:intergenic |
CAATTCATCGGAGGAAAGCC+AGG | 0.517630 | 1.2:-22453056 | MS.gene96448:CDS |
TATAATGTCAGCAGTTGTCC+TGG | 0.525454 | 1.2:+22453038 | None:intergenic |
AAATTGTACGGTCATTGTAA+TGG | 0.527504 | 1.2:-22453716 | MS.gene96448:CDS |
TCATCCATAAATTAAATGGA+TGG | 0.534246 | 1.2:-22453154 | MS.gene96448:CDS |
ATTACAGGCTACAGTGTGAA+AGG | 0.538662 | 1.2:-22453347 | MS.gene96448:CDS |
CAGTGTTACCATCGTATGAT+CGG | 0.539041 | 1.2:-22453191 | MS.gene96448:CDS |
AACAAGTTTCACACGCTCAC+GGG | 0.539414 | 1.2:-22453290 | MS.gene96448:CDS |
TGATAAACATGCTATTTGCA+AGG | 0.543912 | 1.2:-22453093 | MS.gene96448:CDS |
CGCATGGTGGCTTGATCCGG+AGG | 0.543956 | 1.2:+22453428 | None:intergenic |
TTTGACAACTTTGAAATCGT+TGG | 0.545174 | 1.2:+22453553 | None:intergenic |
GATGAAAGAGAAAAGACAAA+GGG | 0.546402 | 1.2:+22453509 | None:intergenic |
AAATGGACCTCTCTAGTGGT+AGG | 0.547452 | 1.2:+22453644 | None:intergenic |
ACAATTTGTTTATTCGTATG+GGG | 0.548232 | 1.2:+22453732 | None:intergenic |
GCTTGATCCGGAGGAAGAGT+AGG | 0.549101 | 1.2:+22453437 | None:intergenic |
ATACGAATAAACAAATTGTA+CGG | 0.552456 | 1.2:-22453728 | MS.gene96448:CDS |
GGGTTCCAAAGAATTAAGCT+TGG | 0.557185 | 1.2:+22453665 | None:intergenic |
TCTAGATTAATATAGGAGGC+TGG | 0.565590 | 1.2:+22453608 | None:intergenic |
AATATAGGAGGCTGGATGTG+GGG | 0.566500 | 1.2:+22453616 | None:intergenic |
AAGAATGGTGTTCAATTCAT+CGG | 0.571747 | 1.2:-22453068 | MS.gene96448:CDS |
CTGACATTATACGACCATCA+TGG | 0.581550 | 1.2:-22453026 | MS.gene96448:CDS |
AACACTGCACAACATAAGCA+AGG | 0.585434 | 1.2:+22453207 | None:intergenic |
ATATAGGAGGCTGGATGTGG+GGG | 0.587028 | 1.2:+22453617 | None:intergenic |
CAACAAGTTTCACACGCTCA+CGG | 0.588066 | 1.2:-22453291 | MS.gene96448:CDS |
CTTGATCCGGAGGAAGAGTA+GGG | 0.588273 | 1.2:+22453438 | None:intergenic |
TACAAAATGGACCTCTCTAG+TGG | 0.591454 | 1.2:+22453640 | None:intergenic |
TGTCAAAGAGCTTGTCATTG+TGG | 0.591817 | 1.2:+22453816 | None:intergenic |
AATAATTAACTATGCTGACA+AGG | 0.596059 | 1.2:+22452920 | None:intergenic |
AATGGACCTCTCTAGTGGTA+GGG | 0.610634 | 1.2:+22453645 | None:intergenic |
GTATTCTAGATTAATATAGG+AGG | 0.614925 | 1.2:+22453604 | None:intergenic |
GTTGAAGTGAGTTGCCATGA+TGG | 0.618328 | 1.2:+22453012 | None:intergenic |
ATAAACATGCTATTTGCAAG+GGG | 0.627103 | 1.2:-22453091 | MS.gene96448:CDS |
GGTTAATGATCATGAAATGG+TGG | 0.634362 | 1.2:+22453873 | None:intergenic |
TCGTTTGGAATAATATCGCA+TGG | 0.637289 | 1.2:+22453412 | None:intergenic |
TTGGAACCCTACCACTAGAG+AGG | 0.638745 | 1.2:-22453651 | MS.gene96448:CDS |
TGATGAAAGAGAAAAGACAA+AGG | 0.644899 | 1.2:+22453508 | None:intergenic |
TTCTCATTCCGATCATACGA+TGG | 0.647097 | 1.2:+22453183 | None:intergenic |
ATAATTAACTATGCTGACAA+GGG | 0.649830 | 1.2:+22452921 | None:intergenic |
TAATGATCATGAAATGGTGG+TGG | 0.660160 | 1.2:+22453876 | None:intergenic |
AATGGTGTTCAATTCATCGG+AGG | 0.660690 | 1.2:-22453065 | MS.gene96448:CDS |
ACACTGCACAACATAAGCAA+GGG | 0.671428 | 1.2:+22453208 | None:intergenic |
GAAAATGTGACTGAGATCAA+CGG | 0.673292 | 1.2:-22453233 | MS.gene96448:CDS |
TTTGGAATAATATCGCATGG+TGG | 0.739511 | 1.2:+22453415 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAACAAAATTGTATAATT+TGG | + | chr1.2:22453704-22453723 | None:intergenic | 15.0% |
!! | AAATACAACATTCTTGTTAA+TGG | - | chr1.2:22453448-22453467 | MS.gene96448:CDS | 20.0% |
!! | ATACGAATAAACAAATTGTA+CGG | - | chr1.2:22453103-22453122 | MS.gene96448:CDS | 20.0% |
!! | CAAGTATTCTAGATTAATAT+AGG | + | chr1.2:22453233-22453252 | None:intergenic | 20.0% |
!!! | ATTAATCTAGAATACTTGAT+TGG | - | chr1.2:22453235-22453254 | MS.gene96448:CDS | 20.0% |
!!! | TACAATTTGTTTATTCGTAT+GGG | + | chr1.2:22453103-22453122 | None:intergenic | 20.0% |
!!! | TTGTAATGGTATTTTATGTT+TGG | - | chr1.2:22453129-22453148 | MS.gene96448:CDS | 20.0% |
! | ACAAGAATGTTGTATTTGTT+AGG | + | chr1.2:22453445-22453464 | None:intergenic | 25.0% |
! | ATTGGTTAATGATCATGAAA+TGG | + | chr1.2:22452964-22452983 | None:intergenic | 25.0% |
! | GTATTCTAGATTAATATAGG+AGG | + | chr1.2:22453230-22453249 | None:intergenic | 25.0% |
! | TCATCCATAAATTAAATGGA+TGG | - | chr1.2:22453677-22453696 | MS.gene96448:CDS | 25.0% |
! | TTGTTAATGGCATTTATCAT+TGG | - | chr1.2:22453461-22453480 | MS.gene96448:CDS | 25.0% |
!! | ACAATTTGTTTATTCGTATG+GGG | + | chr1.2:22453102-22453121 | None:intergenic | 25.0% |
!! | GTACAATTTGTTTATTCGTA+TGG | + | chr1.2:22453104-22453123 | None:intergenic | 25.0% |
!!! | CAATTTTGTTTCACTTGATT+CGG | - | chr1.2:22453711-22453730 | MS.gene96448:CDS | 25.0% |
AAATTGTACGGTCATTGTAA+TGG | - | chr1.2:22453115-22453134 | MS.gene96448:CDS | 30.0% | |
AAGAATGGTGTTCAATTCAT+CGG | - | chr1.2:22453763-22453782 | MS.gene96448:CDS | 30.0% | |
ACAATCTTAGCGAAAAATCA+TGG | - | chr1.2:22453356-22453375 | MS.gene96448:CDS | 30.0% | |
ATAACCCAAGCTTAATTCTT+TGG | - | chr1.2:22453161-22453180 | MS.gene96448:CDS | 30.0% | |
CAGTTTCAAATTGTTCTACA+TGG | - | chr1.2:22453841-22453860 | MS.gene96448:CDS | 30.0% | |
GATGAAAGAGAAAAGACAAA+GGG | + | chr1.2:22453325-22453344 | None:intergenic | 30.0% | |
TATGATCGGAATGAGAATTT+GGG | - | chr1.2:22453654-22453673 | MS.gene96448:CDS | 30.0% | |
TGATGAAAGAGAAAAGACAA+AGG | + | chr1.2:22453326-22453345 | None:intergenic | 30.0% | |
TGGGTCATCCATAAATTAAA+TGG | - | chr1.2:22453673-22453692 | MS.gene96448:CDS | 30.0% | |
! | AAAAGACAAAGGGTTTTTCA+CGG | + | chr1.2:22453315-22453334 | None:intergenic | 30.0% |
! | ATAAACATGCTATTTGCAAG+GGG | - | chr1.2:22453740-22453759 | MS.gene96448:CDS | 30.0% |
! | GATAAACATGCTATTTGCAA+GGG | - | chr1.2:22453739-22453758 | MS.gene96448:CDS | 30.0% |
! | GGCATGTTTCTTTTGTATAT+TGG | + | chr1.2:22452982-22453001 | None:intergenic | 30.0% |
! | TGATAAACATGCTATTTGCA+AGG | - | chr1.2:22453738-22453757 | MS.gene96448:CDS | 30.0% |
! | TGGTCCATCCATTTAATTTA+TGG | + | chr1.2:22453684-22453703 | None:intergenic | 30.0% |
!! | CTAGAATACTTGATTGGTTT+CGG | - | chr1.2:22453241-22453260 | MS.gene96448:CDS | 30.0% |
!! | TTTGACAACTTTGAAATCGT+TGG | + | chr1.2:22453281-22453300 | None:intergenic | 30.0% |
GAAAATGTGACTGAGATCAA+CGG | - | chr1.2:22453598-22453617 | MS.gene96448:CDS | 35.0% | |
GAAATCAAAGCAGAGAATGA+TGG | + | chr1.2:22453515-22453534 | None:intergenic | 35.0% | |
GGCATTTATCATTGGATTAC+AGG | - | chr1.2:22453469-22453488 | MS.gene96448:CDS | 35.0% | |
GGTTAATGATCATGAAATGG+TGG | + | chr1.2:22452961-22452980 | None:intergenic | 35.0% | |
GGTTCCAAAGAATTAAGCTT+GGG | + | chr1.2:22453168-22453187 | None:intergenic | 35.0% | |
GTATGATCGGAATGAGAATT+TGG | - | chr1.2:22453653-22453672 | MS.gene96448:CDS | 35.0% | |
TAATGATCATGAAATGGTGG+TGG | + | chr1.2:22452958-22452977 | None:intergenic | 35.0% | |
TCTAGATTAATATAGGAGGC+TGG | + | chr1.2:22453226-22453245 | None:intergenic | 35.0% | |
! | CATTGTGGTTATGGGTTTTA+GGG | + | chr1.2:22453003-22453022 | None:intergenic | 35.0% |
! | GTTGTATTTGTTAGGTCGTT+TGG | + | chr1.2:22453437-22453456 | None:intergenic | 35.0% |
! | TCATTGTGGTTATGGGTTTT+AGG | + | chr1.2:22453004-22453023 | None:intergenic | 35.0% |
! | TCGTTTGGAATAATATCGCA+TGG | + | chr1.2:22453422-22453441 | None:intergenic | 35.0% |
! | TGTCTTTTCTCTTTCATCAC+TGG | - | chr1.2:22453327-22453346 | MS.gene96448:CDS | 35.0% |
! | TTTGGAATAATATCGCATGG+TGG | + | chr1.2:22453419-22453438 | None:intergenic | 35.0% |
!! | TTTGGAAAGAGAGAAGCATT+AGG | + | chr1.2:22453072-22453091 | None:intergenic | 35.0% |
!!! | TTCGTATGGGGATGTTTTTT+TGG | + | chr1.2:22453090-22453109 | None:intergenic | 35.0% |
AACACTGCACAACATAAGCA+AGG | + | chr1.2:22453627-22453646 | None:intergenic | 40.0% | |
AATGGTGTTCAATTCATCGG+AGG | - | chr1.2:22453766-22453785 | MS.gene96448:CDS | 40.0% | |
ACACTGCACAACATAAGCAA+GGG | + | chr1.2:22453626-22453645 | None:intergenic | 40.0% | |
AGAGCTTGTCATTGTGGTTA+TGG | + | chr1.2:22453012-22453031 | None:intergenic | 40.0% | |
ATTACAGGCTACAGTGTGAA+AGG | - | chr1.2:22453484-22453503 | MS.gene96448:CDS | 40.0% | |
CAGTGTTACCATCGTATGAT+CGG | - | chr1.2:22453640-22453659 | MS.gene96448:CDS | 40.0% | |
CTGACATTATACGACCATCA+TGG | - | chr1.2:22453805-22453824 | MS.gene96448:CDS | 40.0% | |
GAGCTTGTCATTGTGGTTAT+GGG | + | chr1.2:22453011-22453030 | None:intergenic | 40.0% | |
GGGTTCCAAAGAATTAAGCT+TGG | + | chr1.2:22453169-22453188 | None:intergenic | 40.0% | |
TAATATAGGAGGCTGGATGT+GGG | + | chr1.2:22453219-22453238 | None:intergenic | 40.0% | |
TACAAAATGGACCTCTCTAG+TGG | + | chr1.2:22453194-22453213 | None:intergenic | 40.0% | |
TATAATGTCAGCAGTTGTCC+TGG | + | chr1.2:22453796-22453815 | None:intergenic | 40.0% | |
TGGTATACTTGACGCTTTCT+TGG | - | chr1.2:22453861-22453880 | MS.gene96448:CDS | 40.0% | |
TGTCAAAGAGCTTGTCATTG+TGG | + | chr1.2:22453018-22453037 | None:intergenic | 40.0% | |
TTAATATAGGAGGCTGGATG+TGG | + | chr1.2:22453220-22453239 | None:intergenic | 40.0% | |
TTCTCATTCCGATCATACGA+TGG | + | chr1.2:22453651-22453670 | None:intergenic | 40.0% | |
! | GAAGCATTAGGTGAGTTTCT+AGG | + | chr1.2:22453060-22453079 | None:intergenic | 40.0% |
AAATGGACCTCTCTAGTGGT+AGG | + | chr1.2:22453190-22453209 | None:intergenic | 45.0% | |
AACAAGTTTCACACGCTCAC+GGG | - | chr1.2:22453541-22453560 | MS.gene96448:CDS | 45.0% | |
AATATAGGAGGCTGGATGTG+GGG | + | chr1.2:22453218-22453237 | None:intergenic | 45.0% | |
AATGGACCTCTCTAGTGGTA+GGG | + | chr1.2:22453189-22453208 | None:intergenic | 45.0% | |
CAACAAGTTTCACACGCTCA+CGG | - | chr1.2:22453540-22453559 | MS.gene96448:CDS | 45.0% | |
GCTATTTGCAAGGGGAAGAA+TGG | - | chr1.2:22453748-22453767 | MS.gene96448:CDS | 45.0% | |
GGTGGTCATCGTTAGACATA+TGG | + | chr1.2:22452940-22452959 | None:intergenic | 45.0% | |
GTTGAAGTGAGTTGCCATGA+TGG | + | chr1.2:22453822-22453841 | None:intergenic | 45.0% | |
! | TCCTATCACACGTTTGGCTT+CGG | - | chr1.2:22453564-22453583 | MS.gene96448:CDS | 45.0% |
ATATAGGAGGCTGGATGTGG+GGG | + | chr1.2:22453217-22453236 | None:intergenic | 50.0% | |
CAATTCATCGGAGGAAAGCC+AGG | - | chr1.2:22453775-22453794 | MS.gene96448:CDS | 50.0% | |
CCATAACCCTACTCTTCCTC+CGG | - | chr1.2:22453387-22453406 | MS.gene96448:CDS | 50.0% | |
CTTGATCCGGAGGAAGAGTA+GGG | + | chr1.2:22453396-22453415 | None:intergenic | 50.0% | |
TATCGCATGGTGGCTTGATC+CGG | + | chr1.2:22453409-22453428 | None:intergenic | 50.0% | |
TCCGAAGCCAAACGTGTGAT+AGG | + | chr1.2:22453568-22453587 | None:intergenic | 50.0% | |
TTGGAACCCTACCACTAGAG+AGG | - | chr1.2:22453180-22453199 | MS.gene96448:CDS | 50.0% | |
! | ACACGTTTGGCTTCGGAGTT+TGG | - | chr1.2:22453571-22453590 | MS.gene96448:CDS | 50.0% |
! | CTGGATGTGGGGGTACAAAA+TGG | + | chr1.2:22453207-22453226 | None:intergenic | 50.0% |
CACGGGTCCTATCACACGTT+TGG | - | chr1.2:22453558-22453577 | MS.gene96448:CDS | 55.0% | |
CCGGAGGAAGAGTAGGGTTA+TGG | + | chr1.2:22453390-22453409 | None:intergenic | 55.0% | |
GCTTGATCCGGAGGAAGAGT+AGG | + | chr1.2:22453397-22453416 | None:intergenic | 55.0% | |
CGCATGGTGGCTTGATCCGG+AGG | + | chr1.2:22453406-22453425 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 22452929 | 22453924 | 22452929 | ID=MS.gene96448 |
chr1.2 | mRNA | 22452929 | 22453924 | 22452929 | ID=MS.gene96448.t1;Parent=MS.gene96448 |
chr1.2 | exon | 22452929 | 22453924 | 22452929 | ID=MS.gene96448.t1.exon1;Parent=MS.gene96448.t1 |
chr1.2 | CDS | 22452929 | 22453924 | 22452929 | ID=cds.MS.gene96448.t1;Parent=MS.gene96448.t1 |
Gene Sequence |
Protein sequence |