AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54541

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54541.t1 MTR_1g008000 62.951 305 47 5 46 330 1 259 1.10e-120 349
MS.gene54541.t1 MTR_1g037540 37.789 389 160 17 1 319 1 377 1.33e-57 192
MS.gene54541.t1 MTR_4g080200 37.394 353 179 13 5 330 3 340 1.92e-55 185
MS.gene54541.t1 MTR_1g023400 37.640 356 158 16 4 319 2 333 6.25e-47 162
MS.gene54541.t1 MTR_1g022200 37.143 385 177 19 4 345 14 376 8.29e-47 163
MS.gene54541.t1 MTR_1g009110 37.898 314 141 14 3 273 12 314 1.94e-40 146
MS.gene54541.t1 MTR_1g022105 35.211 284 143 14 4 273 20 276 8.77e-28 111
MS.gene54541.t1 MTR_1g023430 40.690 145 75 6 201 341 38 175 1.40e-19 85.5
MS.gene54541.t1 MTR_3g036430 28.821 229 134 8 4 223 19 227 6.16e-16 78.2
MS.gene54541.t1 MTR_6g089990 38.136 118 57 2 4 120 54 156 1.71e-14 72.4
MS.gene54541.t1 MTR_7g013590 26.639 244 143 6 8 223 39 274 2.97e-14 73.6
MS.gene54541.t1 MTR_7g016930 25.267 281 163 12 7 250 18 288 1.05e-13 71.6
MS.gene54541.t1 MTR_6g065980 24.333 300 160 13 8 272 19 286 6.74e-13 69.3
MS.gene54541.t1 MTR_6g090010 57.692 52 22 0 4 55 54 105 6.86e-13 66.2
MS.gene54541.t1 MTR_0620s0010 65.116 43 15 0 4 46 5 47 7.98e-13 63.2
MS.gene54541.t1 MTR_5g046300 23.692 325 186 13 8 295 7 306 1.88e-12 67.8
MS.gene54541.t1 MTR_5g046290 23.692 325 186 13 8 295 7 306 1.88e-12 67.8
MS.gene54541.t1 MTR_1g024125 40.336 119 61 6 208 322 38 150 3.51e-12 63.9
MS.gene54541.t1 MTR_4g109290 35.606 132 73 4 8 134 12 136 8.98e-12 63.5
MS.gene54541.t1 MTR_6g089910 65.116 43 15 0 4 46 54 96 1.71e-11 60.5
MS.gene54541.t1 MTR_8g032390 27.304 293 172 12 5 277 40 311 2.32e-11 64.7
MS.gene54541.t1 MTR_0115s0020 26.048 334 168 16 3 273 8 325 3.20e-11 64.3
MS.gene54541.t1 MTR_4g133170 24.272 309 172 14 5 273 4 290 4.14e-11 63.9
MS.gene54541.t1 MTR_0831s0010 24.790 238 126 11 7 201 52 279 4.75e-11 63.9
MS.gene54541.t1 MTR_7g090810 27.556 225 132 9 67 277 139 346 6.32e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54541.t1 AT3G16210 27.236 246 134 8 1 224 1 223 1.26e-12 68.6
MS.gene54541.t1 AT1G47790 22.973 296 170 12 8 269 28 299 2.83e-11 64.7

Find 77 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCTAATCTCATTAAT+TGG 0.178899 1.2:-11648955 None:intergenic
GGTGTTTATCATTGGCTTAT+AGG 0.230766 1.2:+11648769 MS.gene54541:CDS
CAATTAATGAGATTAGAATT+TGG 0.234969 1.2:+11648956 MS.gene54541:CDS
TAAGAGTCTAGGAGAAGATT+TGG 0.251986 1.2:+11648104 MS.gene54541:CDS
ATGTACAATACTCTTGTTAA+TGG 0.263447 1.2:+11648748 MS.gene54541:CDS
GACGAAGCATTTATTAGTTT+TGG 0.264089 1.2:+11648538 MS.gene54541:CDS
TTGTTAGATTACATTGAAAT+TGG 0.271300 1.2:-11649149 None:intergenic
CATGTGTCTCTTAACGAAAT+AGG 0.285013 1.2:-11648214 None:intergenic
AATTAATGAGATTAGAATTT+GGG 0.326552 1.2:+11648957 MS.gene54541:CDS
CCCAACAATCCTTGAATTTG+TGG 0.331872 1.2:+11649625 MS.gene54541:CDS
ATATCTTCATTAGATCTTGT+TGG 0.350920 1.2:-11649101 None:intergenic
TTTGACGACTTTGAATTCAT+TGG 0.369013 1.2:-11648575 None:intergenic
CATGATATCGCGGAGATTAA+CGG 0.370428 1.2:+11648892 MS.gene54541:CDS
CCACAAATTCAAGGATTGTT+GGG 0.374606 1.2:-11649625 None:intergenic
GACAATGTCATAAGAAGGTT+GGG 0.376207 1.2:-11648503 None:intergenic
CAGATACTAGTGAGGCTTCC+GGG 0.384250 1.2:+11648132 MS.gene54541:CDS
TTGTTAATGGTGTTTATCAT+TGG 0.389185 1.2:+11648761 MS.gene54541:CDS
GAGGGACAGGTAAAGGGATA+AGG 0.405900 1.2:-11648684 None:intergenic
ATGTGTCTCTTAACGAAATA+GGG 0.416506 1.2:-11648213 None:intergenic
ACAGATACTAGTGAGGCTTC+CGG 0.420446 1.2:+11648131 MS.gene54541:CDS
AAATCGTGATCATCATGGTT+GGG 0.422524 1.2:-11648793 None:intergenic
ATCGTCCTGTACGCTGGTCT+CGG 0.432823 1.2:+11648608 MS.gene54541:CDS
TTTCTGTTTGCAAGACTGTA+TGG 0.438229 1.2:+11648417 MS.gene54541:intron
GGTTAAAGATCAACAAGGTT+GGG 0.438242 1.2:+11648978 MS.gene54541:CDS
TCTGAAGGAGGGACAGGTAA+AGG 0.449238 1.2:-11648691 None:intergenic
GACTTTGAATTCATTGGTGT+TGG 0.451574 1.2:-11648569 None:intergenic
ATTGAACGCATTCTTTCAAA+GGG 0.454335 1.2:+11649045 MS.gene54541:CDS
ACTTTGAATTCATTGGTGTT+GGG 0.458427 1.2:-11648568 None:intergenic
GCAATTTCACCACAAATTCA+AGG 0.463760 1.2:-11649634 None:intergenic
TATTGAACGCATTCTTTCAA+AGG 0.464379 1.2:+11649044 MS.gene54541:CDS
ACCACAAATTCAAGGATTGT+TGG 0.464682 1.2:-11649626 None:intergenic
CTTGTTGGAACATTCTATCA+AGG 0.472063 1.2:-11649086 None:intergenic
CGACAATGTCATAAGAAGGT+TGG 0.488384 1.2:-11648504 None:intergenic
AGGGACAGGTAAAGGGATAA+GGG 0.489666 1.2:-11648683 None:intergenic
AAGAAGATGGACCTCTCTAA+TGG 0.492276 1.2:-11648479 None:intergenic
CTGAAGGAGGGACAGGTAAA+GGG 0.497818 1.2:-11648690 None:intergenic
TGGAAAGGACTATATCGAAC+TGG 0.498828 1.2:-11648868 None:intergenic
GGGTTAAAGATCAACAAGGT+TGG 0.505393 1.2:+11648977 MS.gene54541:CDS
GATGGACCTCTCTAATGGTT+GGG 0.509330 1.2:-11648474 None:intergenic
AATTGTCTCTCCTATGGTAA+AGG 0.512169 1.2:+11649663 MS.gene54541:CDS
AAGAAGGTTGGGGAAGAAGA+TGG 0.514921 1.2:-11648492 None:intergenic
ATAATCATAGCACTAAATCA+TGG 0.517780 1.2:+11648659 MS.gene54541:CDS
AACCACAATTGTCTCTCCTA+TGG 0.519722 1.2:+11649657 MS.gene54541:CDS
AGATGGACCTCTCTAATGGT+TGG 0.521206 1.2:-11648475 None:intergenic
GAATGCGTTCAATATCAAAT+CGG 0.530755 1.2:-11649035 None:intergenic
ACGCATTCTTTCAAAGGGGA+AGG 0.532718 1.2:+11649050 MS.gene54541:CDS
CGTTAAGAGACACATGCAGA+TGG 0.533125 1.2:+11648221 MS.gene54541:CDS
ATAGTTTCTGAAGGAGGGAC+AGG 0.537807 1.2:-11648697 None:intergenic
CTAGACCGAGACCAGCGTAC+AGG 0.545109 1.2:-11648613 None:intergenic
TGTTAAAATCGTGATCATCA+TGG 0.545146 1.2:-11648798 None:intergenic
AAAATCGTGATCATCATGGT+TGG 0.549224 1.2:-11648794 None:intergenic
ATTTCGATTAACATAAGCAA+GGG 0.557921 1.2:-11648917 None:intergenic
AATCGTGATCATCATGGTTG+GGG 0.560502 1.2:-11648792 None:intergenic
TCTACGACAATGTCATAAGA+AGG 0.569668 1.2:-11648508 None:intergenic
GTTAAGAGACACATGCAGAT+GGG 0.585040 1.2:+11648222 MS.gene54541:CDS
TAATCTCCGCGATATCATGA+TGG 0.585641 1.2:-11648888 None:intergenic
TACCTCTTCTCCTTTACCAT+AGG 0.590831 1.2:-11649673 None:intergenic
TATATGATAGTTTCTGAAGG+AGG 0.592536 1.2:-11648703 None:intergenic
GTATCCATCGTCCTGTACGC+TGG 0.592741 1.2:+11648602 MS.gene54541:CDS
GTAATCTAACAAGTGATCTG+TGG 0.599441 1.2:+11649160 MS.gene54541:CDS
ATATGATAGTTTCTGAAGGA+GGG 0.602960 1.2:-11648702 None:intergenic
ATGGAAAGATCATGAGGAGA+CGG 0.604445 1.2:-11648260 None:intergenic
TGCTAGATGGAAAGATCATG+AGG 0.612845 1.2:-11648266 None:intergenic
GTGGAACCCAACCATTAGAG+AGG 0.613504 1.2:+11648468 MS.gene54541:CDS
AATTTCGATTAACATAAGCA+AGG 0.613905 1.2:-11648918 None:intergenic
TCCGCGATATCATGATGGAA+AGG 0.614688 1.2:-11648883 None:intergenic
TCAGAAACTATCATATATCA+CGG 0.615345 1.2:+11648709 MS.gene54541:CDS
GAGACCAGCGTACAGGACGA+TGG 0.621218 1.2:-11648606 None:intergenic
TCCTTTCCATCATGATATCG+CGG 0.629162 1.2:+11648882 MS.gene54541:CDS
TGATATATGATAGTTTCTGA+AGG 0.639815 1.2:-11648706 None:intergenic
ACAATGTCATAAGAAGGTTG+GGG 0.640082 1.2:-11648502 None:intergenic
GTAGTTGAAACTGATTCGTG+TGG 0.653741 1.2:-11648837 None:intergenic
TCAAATGCGTACAACAATCG+TGG 0.656751 1.2:+11648172 MS.gene54541:CDS
TACCATAGGAGAGACAATTG+TGG 0.659678 1.2:-11649659 None:intergenic
ATTTGGGTTAAAGATCAACA+AGG 0.669261 1.2:+11648973 MS.gene54541:CDS
TGGAGATACAGATACTAGTG+AGG 0.677466 1.2:+11648124 MS.gene54541:CDS
TTGAACGCATTCTTTCAAAG+GGG 0.725587 1.2:+11649046 MS.gene54541:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGCTTTATTATTTTT+TGG + chr1.2:11649284-11649303 MS.gene54541:intron 10.0%
!! AATTAATGAGATTAGAATTT+GGG + chr1.2:11648957-11648976 MS.gene54541:CDS 15.0%
!!! ATTTTAGTTTTTTTCTTTAG+AGG + chr1.2:11649247-11649266 MS.gene54541:intron 15.0%
!! ATGTTATGATTGTTAACATT+GGG + chr1.2:11649555-11649574 MS.gene54541:intron 20.0%
!! CAAATTCTAATCTCATTAAT+TGG - chr1.2:11648958-11648977 None:intergenic 20.0%
!! CAATTAATGAGATTAGAATT+TGG + chr1.2:11648956-11648975 MS.gene54541:CDS 20.0%
!! TATGTTATGATTGTTAACAT+TGG + chr1.2:11649554-11649573 MS.gene54541:intron 20.0%
!! TTGTAAAACATATTTCCTAT+TGG - chr1.2:11648355-11648374 None:intergenic 20.0%
!! TTGTTAGATTACATTGAAAT+TGG - chr1.2:11649152-11649171 None:intergenic 20.0%
!!! AGTTAAAGTGTTTTAAATTG+TGG + chr1.2:11649524-11649543 MS.gene54541:intron 20.0%
!!! TTTCTTATTTATACACAAAC+CGG + chr1.2:11649342-11649361 MS.gene54541:intron 20.0%
! AAAAAACTAAAATCATGTCC+CGG - chr1.2:11649240-11649259 None:intergenic 25.0%
! AAAATAATACATATGTACCC+CGG - chr1.2:11649364-11649383 None:intergenic 25.0%
! AATTTCGATTAACATAAGCA+AGG - chr1.2:11648921-11648940 None:intergenic 25.0%
! ATAATCATAGCACTAAATCA+TGG + chr1.2:11648659-11648678 MS.gene54541:CDS 25.0%
! ATATCTTCATTAGATCTTGT+TGG - chr1.2:11649104-11649123 None:intergenic 25.0%
! ATGTACAATACTCTTGTTAA+TGG + chr1.2:11648748-11648767 MS.gene54541:CDS 25.0%
! ATTTCGATTAACATAAGCAA+GGG - chr1.2:11648920-11648939 None:intergenic 25.0%
! TCAGAAACTATCATATATCA+CGG + chr1.2:11648709-11648728 MS.gene54541:CDS 25.0%
! TGATATATGATAGTTTCTGA+AGG - chr1.2:11648709-11648728 None:intergenic 25.0%
! TTGTTAATGGTGTTTATCAT+TGG + chr1.2:11648761-11648780 MS.gene54541:CDS 25.0%
!! TTCTTATTTATACACAAACC+GGG + chr1.2:11649343-11649362 MS.gene54541:intron 25.0%
ATGTGTCTCTTAACGAAATA+GGG - chr1.2:11648216-11648235 None:intergenic 30.0%
ATTGAACGCATTCTTTCAAA+GGG + chr1.2:11649045-11649064 MS.gene54541:CDS 30.0%
CCATATGAAAAGATTCTAAG+TGG - chr1.2:11648382-11648401 None:intergenic 30.0%
GAATGCGTTCAATATCAAAT+CGG - chr1.2:11649038-11649057 None:intergenic 30.0%
TATTGAACGCATTCTTTCAA+AGG + chr1.2:11649044-11649063 MS.gene54541:CDS 30.0%
TGTTAAAATCGTGATCATCA+TGG - chr1.2:11648801-11648820 None:intergenic 30.0%
TTCCTATTGGATTTAGTGTT+GGG - chr1.2:11648342-11648361 None:intergenic 30.0%
TTTCCTATTGGATTTAGTGT+TGG - chr1.2:11648343-11648362 None:intergenic 30.0%
TTTGACGACTTTGAATTCAT+TGG - chr1.2:11648578-11648597 None:intergenic 30.0%
! ACTTTGAATTCATTGGTGTT+GGG - chr1.2:11648571-11648590 None:intergenic 30.0%
! ATATGATAGTTTCTGAAGGA+GGG - chr1.2:11648705-11648724 None:intergenic 30.0%
! ATTTGGGTTAAAGATCAACA+AGG + chr1.2:11648973-11648992 MS.gene54541:CDS 30.0%
! CCACTTAGAATCTTTTCATA+TGG + chr1.2:11648379-11648398 MS.gene54541:intron 30.0%
! TATATGATAGTTTCTGAAGG+AGG - chr1.2:11648706-11648725 None:intergenic 30.0%
! TCTTATTTATACACAAACCG+GGG + chr1.2:11649344-11649363 MS.gene54541:intron 30.0%
! TTCAAGACGACTTAATTTTG+TGG + chr1.2:11648449-11648468 MS.gene54541:CDS 30.0%
! TTTTCATATGGTCATTGCAA+TGG + chr1.2:11648391-11648410 MS.gene54541:intron 30.0%
! TTTTCTTCATGTATGCTAGA+TGG - chr1.2:11648282-11648301 None:intergenic 30.0%
!! AGTGTTTTAAATTGTGGTTG+CGG + chr1.2:11649530-11649549 MS.gene54541:intron 30.0%
!! GACGAAGCATTTATTAGTTT+TGG + chr1.2:11648538-11648557 MS.gene54541:CDS 30.0%
AAAATCGTGATCATCATGGT+TGG - chr1.2:11648797-11648816 None:intergenic 35.0%
AAATCGTGATCATCATGGTT+GGG - chr1.2:11648796-11648815 None:intergenic 35.0%
AACCCAACACTAAATCCAAT+AGG + chr1.2:11648337-11648356 MS.gene54541:intron 35.0%
AACGTAATTACGACACAAAC+CGG + chr1.2:11649218-11649237 MS.gene54541:intron 35.0%
ACAATGTCATAAGAAGGTTG+GGG - chr1.2:11648505-11648524 None:intergenic 35.0%
ACCACAAATTCAAGGATTGT+TGG - chr1.2:11649629-11649648 None:intergenic 35.0%
CATGTGTCTCTTAACGAAAT+AGG - chr1.2:11648217-11648236 None:intergenic 35.0%
CCACAAATTCAAGGATTGTT+GGG - chr1.2:11649628-11649647 None:intergenic 35.0%
CTTGTTGGAACATTCTATCA+AGG - chr1.2:11649089-11649108 None:intergenic 35.0%
GACAATGTCATAAGAAGGTT+GGG - chr1.2:11648506-11648525 None:intergenic 35.0%
GACTTTGAATTCATTGGTGT+TGG - chr1.2:11648572-11648591 None:intergenic 35.0%
GCAATTTCACCACAAATTCA+AGG - chr1.2:11649637-11649656 None:intergenic 35.0%
GGTTAAAGATCAACAAGGTT+GGG + chr1.2:11648978-11648997 MS.gene54541:CDS 35.0%
GTAATCTAACAAGTGATCTG+TGG + chr1.2:11649160-11649179 MS.gene54541:CDS 35.0%
TAAGAGTCTAGGAGAAGATT+TGG + chr1.2:11648104-11648123 MS.gene54541:CDS 35.0%
TCTACGACAATGTCATAAGA+AGG - chr1.2:11648511-11648530 None:intergenic 35.0%
TGTCGTAATTACGTTGACAA+GGG - chr1.2:11649213-11649232 None:intergenic 35.0%
TTGAACGCATTCTTTCAAAG+GGG + chr1.2:11649046-11649065 MS.gene54541:CDS 35.0%
TTTCTGTTTGCAAGACTGTA+TGG + chr1.2:11648417-11648436 MS.gene54541:intron 35.0%
! AAACGCAACAATGATTTTCC+CGG - chr1.2:11648153-11648172 None:intergenic 35.0%
!! GGTGTTTATCATTGGCTTAT+AGG + chr1.2:11648769-11648788 MS.gene54541:CDS 35.0%
AACCACAATTGTCTCTCCTA+TGG + chr1.2:11649657-11649676 MS.gene54541:CDS 40.0%
AAGAAGATGGACCTCTCTAA+TGG - chr1.2:11648482-11648501 None:intergenic 40.0%
AATCGTGATCATCATGGTTG+GGG - chr1.2:11648795-11648814 None:intergenic 40.0%
ACGTAATTACGACACAAACC+GGG + chr1.2:11649219-11649238 MS.gene54541:intron 40.0%
ATGGAAAGATCATGAGGAGA+CGG - chr1.2:11648263-11648282 None:intergenic 40.0%
CATGATATCGCGGAGATTAA+CGG + chr1.2:11648892-11648911 MS.gene54541:CDS 40.0%
CCCAACAATCCTTGAATTTG+TGG + chr1.2:11649625-11649644 MS.gene54541:CDS 40.0%
CGACAATGTCATAAGAAGGT+TGG - chr1.2:11648507-11648526 None:intergenic 40.0%
GGGTTAAAGATCAACAAGGT+TGG + chr1.2:11648977-11648996 MS.gene54541:CDS 40.0%
GTGTCGTAATTACGTTGACA+AGG - chr1.2:11649214-11649233 None:intergenic 40.0%
GTTAAGAGACACATGCAGAT+GGG + chr1.2:11648222-11648241 MS.gene54541:CDS 40.0%
TAATCTCCGCGATATCATGA+TGG - chr1.2:11648891-11648910 None:intergenic 40.0%
TACCATAGGAGAGACAATTG+TGG - chr1.2:11649662-11649681 None:intergenic 40.0%
TCAAATGCGTACAACAATCG+TGG + chr1.2:11648172-11648191 MS.gene54541:CDS 40.0%
TCCTTTCCATCATGATATCG+CGG + chr1.2:11648882-11648901 MS.gene54541:CDS 40.0%
TGCTAGATGGAAAGATCATG+AGG - chr1.2:11648269-11648288 None:intergenic 40.0%
TGGAAAGGACTATATCGAAC+TGG - chr1.2:11648871-11648890 None:intergenic 40.0%
TGGAGATACAGATACTAGTG+AGG + chr1.2:11648124-11648143 MS.gene54541:CDS 40.0%
! TAGTGTTGGGTTGTCATGTA+CGG - chr1.2:11648329-11648348 None:intergenic 40.0%
!! GTAGTTGAAACTGATTCGTG+TGG - chr1.2:11648840-11648859 None:intergenic 40.0%
AAGAAGGTTGGGGAAGAAGA+TGG - chr1.2:11648495-11648514 None:intergenic 45.0%
ACAGATACTAGTGAGGCTTC+CGG + chr1.2:11648131-11648150 MS.gene54541:CDS 45.0%
ACGCATTCTTTCAAAGGGGA+AGG + chr1.2:11649050-11649069 MS.gene54541:CDS 45.0%
AGATGGACCTCTCTAATGGT+TGG - chr1.2:11648478-11648497 None:intergenic 45.0%
AGGGACAGGTAAAGGGATAA+GGG - chr1.2:11648686-11648705 None:intergenic 45.0%
CGTTAAGAGACACATGCAGA+TGG + chr1.2:11648221-11648240 MS.gene54541:CDS 45.0%
GATGGACCTCTCTAATGGTT+GGG - chr1.2:11648477-11648496 None:intergenic 45.0%
! ATAGTTTCTGAAGGAGGGAC+AGG - chr1.2:11648700-11648719 None:intergenic 45.0%
! TCCGCGATATCATGATGGAA+AGG - chr1.2:11648886-11648905 None:intergenic 45.0%
!! AAAAAATAATAATTAGAAAT+TGG - chr1.2:11649412-11649431 None:intergenic 5.0%
!! AAAAATAATAATTAGAAATT+GGG - chr1.2:11649411-11649430 None:intergenic 5.0%
CAGATACTAGTGAGGCTTCC+GGG + chr1.2:11648132-11648151 MS.gene54541:CDS 50.0%
CTGAAGGAGGGACAGGTAAA+GGG - chr1.2:11648693-11648712 None:intergenic 50.0%
GAGGGACAGGTAAAGGGATA+AGG - chr1.2:11648687-11648706 None:intergenic 50.0%
GTGGAACCCAACCATTAGAG+AGG + chr1.2:11648468-11648487 MS.gene54541:CDS 50.0%
TCTGAAGGAGGGACAGGTAA+AGG - chr1.2:11648694-11648713 None:intergenic 50.0%
GTATCCATCGTCCTGTACGC+TGG + chr1.2:11648602-11648621 MS.gene54541:CDS 55.0%
! ATCGTCCTGTACGCTGGTCT+CGG + chr1.2:11648608-11648627 MS.gene54541:CDS 55.0%
CTAGACCGAGACCAGCGTAC+AGG - chr1.2:11648616-11648635 None:intergenic 60.0%
GAGACCAGCGTACAGGACGA+TGG - chr1.2:11648609-11648628 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11648099 11649682 11648099 ID=MS.gene54541
chr1.2 mRNA 11648099 11649682 11648099 ID=MS.gene54541.t1;Parent=MS.gene54541
chr1.2 exon 11648099 11648327 11648099 ID=MS.gene54541.t1.exon1;Parent=MS.gene54541.t1
chr1.2 CDS 11648099 11648327 11648099 ID=cds.MS.gene54541.t1;Parent=MS.gene54541.t1
chr1.2 exon 11648431 11649190 11648431 ID=MS.gene54541.t1.exon2;Parent=MS.gene54541.t1
chr1.2 CDS 11648431 11649190 11648431 ID=cds.MS.gene54541.t1;Parent=MS.gene54541.t1
chr1.2 exon 11649622 11649682 11649622 ID=MS.gene54541.t1.exon3;Parent=MS.gene54541.t1
chr1.2 CDS 11649622 11649682 11649622 ID=cds.MS.gene54541.t1;Parent=MS.gene54541.t1
Gene Sequence

>MS.gene54541

ATGGGTAAGAGTCTAGGAGAAGATTTGGAGATACAGATACTAGTGAGGCTTCCGGGAAAATCATTGTTGCGTTTCAAATGCGTACAACAATCGTGGAATGTTCTCATCAAGACTCCCTATTTCGTTAAGAGACACATGCAGATGGGCATGCAGTCTGACGACCGTCTCCTCATGATCTTTCCATCTAGCATACATGAAGAAAAAAAACGAAGTCACAACGATTCTCTCCGTACATGACAACCCAACACTAAATCCAATAGGAAATATGTTTTACAAAAAACCACTTAGAATCTTTTCATATGGTCATTGCAATGGTGTTTTCTGTTTGCAAGACTGTATGGAGAATCAAATTCAAGACGACTTAATTTTGTGGAACCCAACCATTAGAGAGGTCCATCTTCTTCCCCAACCTTCTTATGACATTGTCGTAGATGAAGATGACGAAGCATTTATTAGTTTTGGTGCTGATCCCAACACCAATGAATTCAAAGTCGTCAAAGTTAGTATCCATCGTCCTGTACGCTGGTCTCGGTCTAGTTCTTTTTCACTTGCTGAACTTTATAATCATAGCACTAAATCATGGACCCTTATCCCTTTACCTGTCCCTCCTTCAGAAACTATCATATATCACGGTCATAGACGTTTTAACATGTACAATACTCTTGTTAATGGTGTTTATCATTGGCTTATAGGCCCCAACCATGATGATCACGATTTTAACATTCTCTGCTTTGACTTCCACACGAATCAGTTTCAACTACTCGAGTCTCCAGTTCGATATAGTCCTTTCCATCATGATATCGCGGAGATTAACGGTTCCCTTGCTTATGTTAATCGAAATTTTTATGCTTTTAATCCAATTAATGAGATTAGAATTTGGGTTAAAGATCAACAAGGTTGGGTCAAGAAATACAACATTAATATCTCACTTGATCGCCGATTTGATATTGAACGCATTCTTTCAAAGGGGAAGGATGATGTTCAAGTCCTTGATAGAATGTTCCAACAAGATCTAATGAAGATATACGATAAAGATTGCAACTTGCTTCACCAATTTCAATGTAATCTAACAAGTGATCTGTGGATTCATGAGTATGTGCAAAGTATAGTTCCCTTGTCAACGTAATTACGACACAAACCGGGACATGATTTTAGTTTTTTTCTTTAGAGGATGATTCAGTATTTATATATGCTTTATTATTTTTTGGTTACATATTATTTAAGTGTAATGCATAATACTACATTTCTTATTTATACACAAACCGGGGTACATATGTATTATTTTTCAGATACTTTAAAGTTTGTTAGACCCAATTTCTAATTATTATTTTTTATATTTAATTGTTTTGAAGAATTATTAGAAGATTTGACTTGTAGAAATTGTTGAAGTTAGTTTAAAATTGTTCAAATTAGAAAAAGTTGTGTAGTTAAAGTGTTTTAAATTGTGGTTGCGGTTATGTTATGATTGTTAACATTGGGAGAAAATTGCTATGCTGCTGTTATTGTGTCTAACATGATTGCAGAAACCCAACAATCCTTGAATTTGTGGTGAAATTGCAACCACAATTGTCTCTCCTATGGTAA
Protein sequence

>MS.gene54541.t1

MGKSLGEDLEIQILVRLPGKSLLRFKCVQQSWNVLIKTPYFVKRHMQMGMQSDDRLLMIFPSSIHEEKKRSHNDSLHCMENQIQDDLILWNPTIREVHLLPQPSYDIVVDEDDEAFISFGADPNTNEFKVVKVSIHRPVRWSRSSSFSLAELYNHSTKSWTLIPLPVPPSETIIYHGHRRFNMYNTLVNGVYHWLIGPNHDDHDFNILCFDFHTNQFQLLESPVRYSPFHHDIAEINGSLAYVNRNFYAFNPINEIRIWVKDQQGWVKKYNINISLDRRFDIERILSKGKDDVQVLDRMFQQDLMKIYDKDCNLLHQFQCNLTSDLWIHENPTILEFVVKLQPQLSLLW