AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066635


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066635.t1 MTR_4g023150 87.432 366 38 1 1 366 1 358 0.0 619
MS.gene066635.t1 MTR_4g023190 86.339 366 41 1 1 366 1 357 0.0 612
MS.gene066635.t1 MTR_4g023200 85.792 366 44 1 1 366 1 358 0.0 600
MS.gene066635.t1 MTR_4g023080 64.110 365 116 6 3 366 2 352 9.06e-156 442
MS.gene066635.t1 MTR_4g021785 63.760 367 115 6 3 366 2 353 4.12e-154 437
MS.gene066635.t1 MTR_4g023090 59.740 385 125 8 2 366 8 382 1.48e-148 425
MS.gene066635.t1 MTR_4g023120 59.151 377 123 6 10 366 3 368 3.99e-144 413
MS.gene066635.t1 MTR_4g023070 58.886 377 124 6 10 366 3 368 2.48e-143 411
MS.gene066635.t1 MTR_4g023380 57.506 393 116 10 2 366 8 377 8.68e-134 387
MS.gene066635.t1 MTR_4g023130 56.712 365 102 7 3 366 2 311 4.28e-128 370
MS.gene066635.t1 MTR_3g103020 55.228 373 139 11 8 366 18 376 2.21e-123 360
MS.gene066635.t1 MTR_4g023440 55.467 375 105 10 2 366 8 330 1.63e-122 357
MS.gene066635.t1 MTR_3g034180 54.047 383 146 10 3 366 116 487 2.47e-122 362
MS.gene066635.t1 MTR_3g034160 53.018 381 151 11 3 365 2 372 6.37e-114 336
MS.gene066635.t1 MTR_4g109270 53.581 377 149 11 1 366 1 362 1.58e-112 332
MS.gene066635.t1 MTR_4g094365 52.116 378 153 11 1 366 1 362 1.72e-112 332
MS.gene066635.t1 MTR_4g122850 53.699 365 136 15 21 366 12 362 3.18e-110 327
MS.gene066635.t1 MTR_4g116330 51.724 377 155 10 2 365 15 377 4.04e-109 324
MS.gene066635.t1 MTR_3g034130 52.732 366 140 11 3 348 2 354 9.68e-109 323
MS.gene066635.t1 MTR_4g117770 51.862 376 160 10 1 366 1 365 8.34e-108 320
MS.gene066635.t1 MTR_4g117810 51.862 376 160 10 1 366 1 365 8.34e-108 320
MS.gene066635.t1 MTR_4g109280 52.033 369 148 10 9 366 7 357 2.37e-107 319
MS.gene066635.t1 MTR_5g070130 49.867 377 167 12 4 365 5 374 1.42e-102 308
MS.gene066635.t1 MTR_4g117850 51.206 373 148 13 9 365 22 376 8.32e-102 305
MS.gene066635.t1 MTR_8g433040 49.474 380 152 12 1 366 9 362 1.28e-99 300
MS.gene066635.t1 MTR_8g032380 49.474 380 152 12 1 366 9 362 1.28e-99 300
MS.gene066635.t1 MTR_4g117780 50.266 376 166 11 1 366 1 365 1.97e-99 299
MS.gene066635.t1 MTR_6g060650 52.073 386 146 14 4 366 2 371 1.12e-98 297
MS.gene066635.t1 MTR_5g070088 45.038 393 174 10 5 366 2 383 2.29e-98 297
MS.gene066635.t1 MTR_5g097210 49.211 380 153 13 3 364 2 359 2.77e-96 291
MS.gene066635.t1 MTR_5g070080 45.939 394 172 11 1 365 1 382 3.26e-95 289
MS.gene066635.t1 MTR_1g055135 46.825 378 165 13 9 366 12 373 1.42e-93 284
MS.gene066635.t1 MTR_8g032390 46.277 376 153 10 1 363 31 370 2.24e-92 281
MS.gene066635.t1 MTR_4g117750 50.928 377 143 14 8 364 1 355 1.77e-91 283
MS.gene066635.t1 MTR_4g117750 53.571 112 46 4 258 366 373 481 1.50e-24 104
MS.gene066635.t1 MTR_4g118380 49.730 370 142 12 4 343 2 357 1.80e-91 278
MS.gene066635.t1 MTR_4g116330 46.419 377 136 10 2 365 15 338 6.24e-89 271
MS.gene066635.t1 MTR_4g117720 46.354 384 137 13 1 365 42 375 9.44e-89 272
MS.gene066635.t1 MTR_8g433030 43.432 373 135 9 1 363 31 337 2.06e-81 252
MS.gene066635.t1 MTR_1g055165 43.164 373 148 11 1 366 1 316 5.40e-81 250
MS.gene066635.t1 MTR_8g013010 50.943 265 106 6 8 261 52 303 8.56e-77 239
MS.gene066635.t1 MTR_4g121580 43.947 380 150 18 1 358 1 339 2.21e-68 220
MS.gene066635.t1 MTR_4g117870 44.518 301 110 9 74 364 10 263 1.97e-67 214
MS.gene066635.t1 MTR_1g055195 43.421 304 156 8 67 365 183 475 9.62e-66 216
MS.gene066635.t1 MTR_4g116320 54.626 227 76 7 152 365 43 255 1.89e-65 208
MS.gene066635.t1 MTR_4g118400 39.178 365 144 15 4 362 2 294 3.37e-59 193
MS.gene066635.t1 MTR_2g048580 38.420 367 188 15 4 363 2 337 2.35e-57 190
MS.gene066635.t1 MTR_7g079370 42.286 350 161 17 39 362 16 350 1.92e-55 186
MS.gene066635.t1 MTR_7g117720 50.472 212 69 7 1 197 1 191 1.05e-51 173
MS.gene066635.t1 MTR_7g117720 45.690 116 56 3 253 363 159 272 1.42e-17 82.0
MS.gene066635.t1 MTR_4g118370 45.525 257 95 12 121 365 34 257 3.62e-51 171
MS.gene066635.t1 MTR_7g079400 41.379 290 141 11 93 366 59 335 4.04e-50 171
MS.gene066635.t1 MTR_8g040935 47.867 211 94 6 162 366 6 206 1.04e-49 166
MS.gene066635.t1 MTR_4g116340 45.082 244 96 7 3 231 27 247 9.20e-49 165
MS.gene066635.t1 MTR_6g463430 50.732 205 81 7 166 366 12 200 1.09e-48 163
MS.gene066635.t1 MTR_8g102520 36.053 380 169 15 1 366 1 320 1.72e-46 161
MS.gene066635.t1 MTR_4g117530 41.700 247 97 7 125 366 47 251 4.41e-41 145
MS.gene066635.t1 MTR_1g055175 43.128 211 104 9 160 366 1 199 1.45e-39 139
MS.gene066635.t1 MTR_4g114700 37.828 267 94 8 108 359 9 218 1.88e-39 140
MS.gene066635.t1 MTR_4g117430 53.061 147 59 4 121 267 16 152 3.28e-38 134
MS.gene066635.t1 MTR_1g055250 39.352 216 113 8 147 355 49 253 1.09e-37 138
MS.gene066635.t1 MTR_5g022420 30.199 351 192 17 9 336 26 346 1.44e-33 128
MS.gene066635.t1 MTR_1g097490 32.172 373 206 17 7 360 46 390 2.00e-33 128
MS.gene066635.t1 MTR_1g097560 30.163 368 216 14 7 360 33 373 7.53e-33 126
MS.gene066635.t1 MTR_7g079420 36.900 271 119 10 107 362 905 1138 8.85e-33 130
MS.gene066635.t1 MTR_1g097330 31.909 351 193 16 10 338 16 342 1.96e-32 126
MS.gene066635.t1 MTR_4g023430 66.304 92 31 0 1 92 32 123 2.83e-32 121
MS.gene066635.t1 MTR_4g023430 47.967 123 42 5 252 366 112 220 2.32e-20 89.0
MS.gene066635.t1 MTR_2g055970 27.749 382 227 16 3 360 204 560 1.13e-31 125
MS.gene066635.t1 MTR_2g047832 29.494 356 212 15 9 334 28 374 1.74e-30 120
MS.gene066635.t1 MTR_2g021150 32.132 333 192 17 9 322 13 330 5.59e-30 118
MS.gene066635.t1 MTR_3g013740 30.000 390 217 18 5 360 39 406 5.74e-30 119
MS.gene066635.t1 MTR_8g101580 28.065 367 231 12 10 360 45 394 7.83e-30 118
MS.gene066635.t1 MTR_3g014540 31.105 344 189 14 10 333 29 344 7.91e-30 118
MS.gene066635.t1 MTR_5g057790 31.965 341 198 16 10 334 46 368 3.37e-29 117
MS.gene066635.t1 MTR_5g057710 30.925 346 196 16 10 334 46 369 7.31e-29 115
MS.gene066635.t1 MTR_2g046920 27.326 344 215 11 9 334 23 349 1.01e-28 115
MS.gene066635.t1 MTR_4g107820 29.355 310 175 11 10 300 36 320 2.19e-28 114
MS.gene066635.t1 MTR_4g107780 29.355 310 175 11 10 300 36 320 2.19e-28 114
MS.gene066635.t1 MTR_4g107780 29.355 310 175 11 10 300 36 320 2.98e-28 114
MS.gene066635.t1 MTR_4g107820 29.355 310 175 11 10 300 36 320 3.07e-28 114
MS.gene066635.t1 MTR_3g014570 29.412 374 217 14 10 360 29 378 3.34e-28 114
MS.gene066635.t1 MTR_4g122860 40.196 204 66 9 176 366 158 318 7.01e-28 112
MS.gene066635.t1 MTR_5g023000 61.702 94 32 3 275 366 6 97 1.16e-27 105
MS.gene066635.t1 MTR_1g094210 30.636 346 198 14 10 339 57 376 1.27e-27 112
MS.gene066635.t1 MTR_1g094210 29.891 368 215 15 10 360 57 398 2.92e-27 111
MS.gene066635.t1 MTR_3g009310 32.573 307 168 14 10 298 42 327 1.54e-26 109
MS.gene066635.t1 MTR_6g065980 28.610 367 222 15 10 360 16 358 1.84e-26 108
MS.gene066635.t1 MTR_4g109290 41.104 163 61 3 3 161 2 133 2.57e-26 104
MS.gene066635.t1 MTR_5g069120 42.222 180 80 8 20 178 1 177 5.56e-26 103
MS.gene066635.t1 MTR_5g057690 31.686 344 185 18 10 334 46 358 6.54e-26 107
MS.gene066635.t1 MTR_7g407070 27.487 382 231 12 10 360 32 398 1.02e-25 107
MS.gene066635.t1 MTR_4g118360 55.752 113 38 6 258 365 18 123 1.16e-25 100
MS.gene066635.t1 MTR_2g046830 27.844 334 204 13 9 323 24 339 1.21e-25 107
MS.gene066635.t1 MTR_8g467140 29.153 295 189 9 8 293 30 313 4.05e-25 104
MS.gene066635.t1 MTR_2g046900 27.221 349 217 14 9 334 27 361 4.91e-25 105
MS.gene066635.t1 MTR_5g057020 29.967 307 181 13 10 309 46 325 9.62e-25 103
MS.gene066635.t1 MTR_3g036290 29.971 347 205 15 10 344 22 342 1.22e-24 103
MS.gene066635.t1 MTR_4g108820 29.607 331 154 14 9 318 41 313 1.64e-24 102
MS.gene066635.t1 MTR_4g133170 27.089 347 206 14 10 333 4 326 1.76e-24 103
MS.gene066635.t1 MTR_3g010390 28.191 376 209 13 10 346 33 386 2.27e-24 103
MS.gene066635.t1 MTR_1g050542 26.359 368 233 13 10 360 58 404 4.01e-24 102
MS.gene066635.t1 MTR_3g013770 28.496 379 219 14 10 360 33 387 6.86e-24 102
MS.gene066635.t1 MTR_3g007330 30.323 310 166 14 10 298 48 328 8.95e-24 101
MS.gene066635.t1 MTR_3g007360 29.134 381 206 17 13 361 55 403 1.19e-23 101
MS.gene066635.t1 MTR_3g006670 28.093 388 215 16 10 360 49 409 2.20e-23 100
MS.gene066635.t1 MTR_3g007410 29.396 381 205 17 13 361 55 403 2.31e-23 100
MS.gene066635.t1 MTR_0044s0300 26.984 378 223 17 10 360 38 389 2.44e-23 100
MS.gene066635.t1 MTR_5g011200 28.254 315 165 16 10 293 17 301 2.56e-23 100
MS.gene066635.t1 MTR_4g030830 26.415 371 210 14 1 325 1 354 2.91e-23 100
MS.gene066635.t1 MTR_2g021190 27.035 344 207 12 10 335 21 338 5.48e-23 99.4
MS.gene066635.t1 MTR_3g072470 27.926 376 197 15 13 336 22 375 5.64e-23 99.8
MS.gene066635.t1 MTR_4g055060 29.167 312 179 12 10 298 30 322 7.45e-23 99.0
MS.gene066635.t1 MTR_7g062100 27.708 397 217 12 10 360 24 396 8.40e-23 99.0
MS.gene066635.t1 MTR_6g053260 31.169 308 164 15 10 293 337 620 8.87e-23 100
MS.gene066635.t1 MTR_4g037465 29.397 398 198 22 2 347 13 379 2.13e-22 97.8
MS.gene066635.t1 MTR_6g021880 27.882 373 214 15 21 360 31 381 3.00e-22 97.1
MS.gene066635.t1 MTR_7g070880 27.568 370 196 13 10 321 21 376 3.50e-22 97.4
MS.gene066635.t1 MTR_6g034720 40.361 166 66 6 131 278 53 203 3.64e-22 93.6
MS.gene066635.t1 MTR_5g046300 28.457 376 215 20 10 360 4 350 5.61e-22 95.9
MS.gene066635.t1 MTR_5g046290 28.457 376 215 20 10 360 4 350 5.61e-22 95.9
MS.gene066635.t1 MTR_3g036430 27.056 377 195 14 10 360 20 342 5.75e-22 95.9
MS.gene066635.t1 MTR_4g061340 28.889 315 174 12 10 298 26 316 6.45e-22 96.3
MS.gene066635.t1 MTR_8g073550 35.859 198 104 7 9 189 29 220 7.05e-22 93.6
MS.gene066635.t1 MTR_3g011060 27.415 383 220 16 10 359 28 385 7.13e-22 96.3
MS.gene066635.t1 MTR_2g021252 27.869 366 217 16 13 361 50 385 7.55e-22 96.3
MS.gene066635.t1 MTR_2g078900 31.457 302 164 17 10 293 33 309 1.09e-21 95.1
MS.gene066635.t1 MTR_0128s0020 26.289 388 218 14 8 354 16 376 1.50e-21 95.5
MS.gene066635.t1 MTR_6g053240 27.885 312 174 11 10 293 28 316 1.82e-21 95.1
MS.gene066635.t1 MTR_2g029990 28.610 374 220 19 11 360 52 402 1.83e-21 95.1
MS.gene066635.t1 MTR_7g070830 27.322 366 202 12 10 321 21 376 3.44e-21 94.7
MS.gene066635.t1 MTR_7g066840 26.667 390 244 15 7 363 20 400 4.45e-21 94.0
MS.gene066635.t1 MTR_2g031720 25.000 380 248 12 10 366 6 371 4.92e-21 94.0
MS.gene066635.t1 MTR_3g083640 26.344 372 229 16 10 360 55 402 5.21e-21 94.0
MS.gene066635.t1 MTR_2g021155 27.095 358 191 14 10 332 36 358 7.00e-21 94.7
MS.gene066635.t1 MTR_1g055145 48.696 115 48 4 1 106 18 130 7.88e-21 91.7
MS.gene066635.t1 MTR_1g055145 41.176 85 46 2 200 284 122 202 2.51e-11 63.9
MS.gene066635.t1 MTR_2g024110 26.452 310 178 11 10 293 4 289 8.19e-21 92.8
MS.gene066635.t1 MTR_3g009260 28.611 360 210 15 13 357 44 371 8.41e-21 93.2
MS.gene066635.t1 MTR_2g021800 25.121 414 241 13 5 361 11 412 1.21e-20 92.8
MS.gene066635.t1 MTR_0707s0020 26.682 446 212 24 8 362 24 445 1.48e-20 92.8
MS.gene066635.t1 MTR_3g011020 27.154 383 205 19 10 359 28 369 2.14e-20 91.7
MS.gene066635.t1 MTR_3g007270 27.838 370 202 19 10 340 47 390 2.26e-20 92.0
MS.gene066635.t1 MTR_6g027910 27.820 399 207 19 10 360 9 374 2.34e-20 91.7
MS.gene066635.t1 MTR_3g010870 29.180 305 165 14 10 293 37 311 2.42e-20 91.7
MS.gene066635.t1 MTR_7g055977 28.501 407 208 21 8 361 5 381 2.74e-20 91.7
MS.gene066635.t1 MTR_3g030250 28.032 371 219 16 10 360 37 379 2.94e-20 91.3
MS.gene066635.t1 MTR_5g057643 33.047 233 136 8 10 231 46 269 3.48e-20 89.4
MS.gene066635.t1 MTR_5g069760 27.621 391 226 18 6 361 2 370 3.82e-20 90.9
MS.gene066635.t1 MTR_3g009240 27.614 373 204 14 10 356 36 368 3.83e-20 91.3
MS.gene066635.t1 MTR_3g436150 26.509 381 230 12 10 360 32 392 4.50e-20 90.9
MS.gene066635.t1 MTR_2g104340 25.672 409 245 11 1 366 5 397 5.20e-20 90.9
MS.gene066635.t1 MTR_8g098830 35.176 199 115 7 165 362 30 215 5.70e-20 87.8
MS.gene066635.t1 MTR_3g023930 26.613 372 214 16 10 360 34 367 6.00e-20 90.5
MS.gene066635.t1 MTR_3g036335 27.013 385 216 20 10 360 41 394 6.77e-20 90.5
MS.gene066635.t1 MTR_4g013180 25.729 377 218 13 9 340 10 369 7.82e-20 90.9
MS.gene066635.t1 MTR_7g007300 27.974 311 184 13 1 297 94 378 8.68e-20 90.5
MS.gene066635.t1 MTR_7g069550 25.791 411 227 18 1 357 5 391 9.62e-20 90.1
MS.gene066635.t1 MTR_2g028130 26.611 357 203 14 7 321 2 341 1.03e-19 90.1
MS.gene066635.t1 MTR_3g011100 28.645 391 215 17 10 360 235 601 1.05e-19 90.9
MS.gene066635.t1 MTR_7g079640 27.660 376 218 16 9 354 12 363 1.29e-19 89.7
MS.gene066635.t1 MTR_0097s0030 27.671 365 215 17 6 340 10 355 1.34e-19 89.7
MS.gene066635.t1 MTR_2g047240 27.671 365 215 17 6 340 10 355 1.34e-19 89.7
MS.gene066635.t1 MTR_7g056760 25.758 396 239 16 8 360 21 404 1.54e-19 89.7
MS.gene066635.t1 MTR_3g007430 27.027 333 197 15 13 325 46 352 2.01e-19 89.0
MS.gene066635.t1 MTR_7g445890 27.794 349 195 14 8 321 14 340 2.35e-19 89.0
MS.gene066635.t1 MTR_3g006570 26.720 378 192 17 10 354 21 346 2.62e-19 88.6
MS.gene066635.t1 MTR_7g028660 26.667 345 183 14 8 306 9 329 2.73e-19 88.6
MS.gene066635.t1 MTR_6g086920 25.546 458 216 23 8 362 36 471 2.98e-19 89.4
MS.gene066635.t1 MTR_7g056290 27.083 384 192 19 13 337 25 379 2.99e-19 89.0
MS.gene066635.t1 MTR_3g030240 25.745 369 225 13 10 360 40 377 3.34e-19 88.2
MS.gene066635.t1 MTR_3g010430 27.078 373 192 18 10 340 36 370 3.74e-19 88.6
MS.gene066635.t1 MTR_5g069930 26.184 359 203 16 6 324 2 338 4.70e-19 87.8
MS.gene066635.t1 MTR_2g021950 24.433 397 252 13 2 361 8 393 5.20e-19 87.8
MS.gene066635.t1 MTR_4g129190 24.859 354 217 13 10 324 6 349 7.55e-19 87.4
MS.gene066635.t1 MTR_4g024890 24.877 406 237 18 1 360 1 384 9.75e-19 87.0
MS.gene066635.t1 MTR_7g078860 26.630 368 211 13 5 330 4 354 1.07e-18 87.0
MS.gene066635.t1 MTR_0115s0020 25.359 418 232 18 1 361 1 395 1.28e-18 87.0
MS.gene066635.t1 MTR_7g061060 27.586 319 195 11 5 298 8 315 1.30e-18 86.7
MS.gene066635.t1 MTR_1g054575 27.329 322 200 13 10 316 52 354 1.53e-18 87.4
MS.gene066635.t1 MTR_6g016285 25.776 419 229 16 6 360 17 417 1.72e-18 86.7
MS.gene066635.t1 MTR_7g061050 27.557 352 211 12 5 325 8 346 1.74e-18 86.3
MS.gene066635.t1 MTR_5g057040 33.871 186 109 6 10 183 46 229 1.78e-18 87.8
MS.gene066635.t1 MTR_7g070440 25.419 358 200 13 7 324 4 334 2.32e-18 85.9
MS.gene066635.t1 MTR_7g055930 27.461 386 202 16 10 327 13 388 2.65e-18 86.3
MS.gene066635.t1 MTR_1g054725 30.065 306 177 12 8 293 18 306 2.66e-18 85.9
MS.gene066635.t1 MTR_7g016930 28.261 322 176 12 3 294 9 305 3.05e-18 85.1
MS.gene066635.t1 MTR_5g046260 27.575 301 162 15 10 302 4 256 3.35e-18 84.3
MS.gene066635.t1 MTR_7g066850 25.189 397 246 14 8 363 21 407 3.49e-18 85.9
MS.gene066635.t1 MTR_6g090180 24.757 412 238 14 4 361 41 434 4.13e-18 85.5
MS.gene066635.t1 MTR_2g021770 26.730 419 235 17 3 365 5 407 4.62e-18 85.1
MS.gene066635.t1 MTR_5g059430 24.480 433 226 18 4 363 20 424 4.95e-18 85.5
MS.gene066635.t1 MTR_7g060940 24.627 402 232 13 4 359 16 392 5.09e-18 85.1
MS.gene066635.t1 MTR_7g079450 41.379 145 72 6 225 366 1 135 5.24e-18 80.1
MS.gene066635.t1 MTR_3g010590 27.614 373 222 18 10 360 39 385 5.66e-18 84.7
MS.gene066635.t1 MTR_5g008530 63.077 65 22 1 3 67 11 73 5.69e-18 77.8
MS.gene066635.t1 MTR_2g022000 24.221 417 232 14 5 357 11 407 6.34e-18 85.1
MS.gene066635.t1 MTR_5g072060 28.022 364 207 16 9 340 5 345 6.47e-18 85.5
MS.gene066635.t1 MTR_7g013590 29.870 308 163 12 13 293 39 320 6.88e-18 84.7
MS.gene066635.t1 MTR_7g066000 27.778 324 190 13 7 298 22 333 7.62e-18 84.7
MS.gene066635.t1 MTR_3g464500 25.691 362 207 13 6 325 23 364 1.05e-17 84.3
MS.gene066635.t1 MTR_1g068875 24.786 351 218 15 10 337 4 331 1.38e-17 83.6
MS.gene066635.t1 MTR_3g011650 32.735 223 117 9 13 221 82 285 1.59e-17 82.4
MS.gene066635.t1 MTR_3g010870 30.544 239 123 10 10 229 37 251 1.78e-17 82.8
MS.gene066635.t1 MTR_3g007300 29.487 312 152 17 10 305 49 308 2.17e-17 82.8
MS.gene066635.t1 MTR_6g004660 29.781 319 175 13 10 298 16 315 2.18e-17 83.2
MS.gene066635.t1 MTR_0649s0020 24.675 385 248 15 10 360 11 387 2.20e-17 83.2
MS.gene066635.t1 MTR_6g048120 26.912 353 211 16 10 338 36 365 2.23e-17 83.2
MS.gene066635.t1 MTR_3g464470 25.967 362 203 13 6 325 3 341 2.44e-17 82.8
MS.gene066635.t1 MTR_3g006500 28.052 385 211 19 10 360 17 369 2.48e-17 82.8
MS.gene066635.t1 MTR_7g055870 26.263 396 194 17 10 327 13 388 2.49e-17 83.2
MS.gene066635.t1 MTR_8g039500 25.779 353 215 13 4 328 6 339 2.69e-17 82.4
MS.gene066635.t1 MTR_4g030980 24.936 393 200 12 10 325 15 389 2.85e-17 83.2
MS.gene066635.t1 MTR_0760s0010 29.655 290 172 11 15 294 52 319 2.89e-17 82.8
MS.gene066635.t1 MTR_4g028510 24.878 410 243 15 2 363 8 400 2.92e-17 83.2
MS.gene066635.t1 MTR_2g006360 29.412 306 154 13 6 302 42 294 3.14e-17 82.4
MS.gene066635.t1 MTR_2g425980 26.000 400 231 16 10 365 5 383 3.20e-17 82.8
MS.gene066635.t1 MTR_1g114700 26.590 346 203 14 10 332 29 346 3.34e-17 82.4
MS.gene066635.t1 MTR_2g461450 27.374 358 213 13 8 340 16 351 3.51e-17 82.4
MS.gene066635.t1 MTR_0128s0070 25.641 390 238 15 8 359 20 395 4.00e-17 82.4
MS.gene066635.t1 MTR_7g017040 26.603 421 224 21 2 366 8 399 4.30e-17 82.4
MS.gene066635.t1 MTR_3g009250 32.579 221 117 9 13 220 44 245 4.34e-17 80.1
MS.gene066635.t1 MTR_1g055070 27.839 273 159 10 2 245 41 304 5.10e-17 82.0
MS.gene066635.t1 MTR_7g066100 26.970 330 192 16 7 298 8 326 5.72e-17 82.0
MS.gene066635.t1 MTR_0464s0020 26.031 388 206 16 8 336 21 386 5.80e-17 82.0
MS.gene066635.t1 MTR_2g025420 24.691 405 233 17 10 360 6 392 6.54e-17 82.0
MS.gene066635.t1 MTR_4g030760 23.496 349 216 13 4 325 67 391 6.78e-17 82.0
MS.gene066635.t1 MTR_7g055987 28.080 349 166 17 13 315 23 332 7.47e-17 81.3
MS.gene066635.t1 MTR_3g010620 27.946 297 164 13 13 293 39 301 8.52e-17 81.3
MS.gene066635.t1 MTR_7g056170 24.324 407 206 14 1 340 66 437 8.53e-17 81.6
MS.gene066635.t1 MTR_1g058190 26.115 314 166 11 8 297 33 304 9.19e-17 81.3
MS.gene066635.t1 MTR_5g097330 25.666 413 231 16 3 361 9 399 1.16e-16 81.3
MS.gene066635.t1 MTR_3g010520 25.532 376 214 17 10 360 25 359 1.17e-16 80.9
MS.gene066635.t1 MTR_2g021210 26.377 345 220 13 2 335 76 397 1.18e-16 81.3
MS.gene066635.t1 MTR_6g080680 24.372 398 242 15 2 359 11 389 1.19e-16 80.9
MS.gene066635.t1 MTR_7g056200 25.945 397 218 15 6 360 19 381 1.22e-16 80.9
MS.gene066635.t1 MTR_3g010920 27.778 378 206 21 10 360 44 381 1.26e-16 80.9
MS.gene066635.t1 MTR_5g007610 27.937 315 183 13 10 298 41 337 1.58e-16 80.9
MS.gene066635.t1 MTR_3g023940 26.735 389 208 17 10 360 34 383 2.19e-16 80.1
MS.gene066635.t1 MTR_5g009060 27.681 401 213 22 10 360 25 398 2.20e-16 80.1
MS.gene066635.t1 MTR_7g050520 26.330 376 193 18 7 333 19 359 2.31e-16 80.1
MS.gene066635.t1 MTR_0667s0010 23.529 357 225 12 10 335 6 345 2.32e-16 80.1
MS.gene066635.t1 MTR_3g010970 26.133 375 216 17 13 360 51 391 2.45e-16 80.1
MS.gene066635.t1 MTR_2g047200 25.526 380 217 16 8 343 18 375 2.74e-16 80.1
MS.gene066635.t1 MTR_3g024110 27.119 295 182 12 10 293 101 373 2.82e-16 80.1
MS.gene066635.t1 MTR_4g023100 73.585 53 13 1 313 365 65 116 2.92e-16 74.7
MS.gene066635.t1 MTR_4g028750 26.330 376 205 16 3 329 9 361 3.55e-16 79.7
MS.gene066635.t1 MTR_5g096710 26.316 399 229 15 7 360 20 398 3.65e-16 79.7
MS.gene066635.t1 MTR_4g030090 25.387 323 193 10 2 291 6 313 5.52e-16 79.0
MS.gene066635.t1 MTR_6g017280 25.000 356 208 15 8 321 7 345 5.73e-16 79.0
MS.gene066635.t1 MTR_7g078900 24.272 412 235 16 1 355 3 394 6.20e-16 79.0
MS.gene066635.t1 MTR_4g028660 24.069 403 248 16 2 361 8 395 7.07e-16 78.6
MS.gene066635.t1 MTR_4g027450 24.069 403 248 16 2 361 8 395 7.07e-16 78.6
MS.gene066635.t1 MTR_7g056003 26.000 400 205 20 13 347 18 391 7.58e-16 78.6
MS.gene066635.t1 MTR_3g058480 30.605 281 129 14 10 253 39 290 9.08e-16 77.8
MS.gene066635.t1 MTR_1g055375 25.641 390 218 18 13 360 7 366 1.20e-15 77.8
MS.gene066635.t1 MTR_3g083010 23.741 417 227 14 10 362 6 395 1.41e-15 77.8
MS.gene066635.t1 MTR_3g030330 27.090 299 177 13 10 293 20 292 1.51e-15 77.4
MS.gene066635.t1 MTR_8g063440 26.486 370 219 12 5 340 7 357 1.59e-15 77.4
MS.gene066635.t1 MTR_4g013185 25.193 389 212 17 1 324 1 375 1.63e-15 77.8
MS.gene066635.t1 MTR_1g055055 25.575 348 211 14 8 339 24 339 1.64e-15 77.0
MS.gene066635.t1 MTR_2g426070 24.384 365 219 13 11 336 7 353 1.89e-15 77.4
MS.gene066635.t1 MTR_7g077970 25.444 338 200 11 10 305 7 334 2.12e-15 77.4
MS.gene066635.t1 MTR_6g017270 29.851 201 117 6 8 186 7 205 2.16e-15 76.6
MS.gene066635.t1 MTR_4g031770 25.733 307 188 10 10 297 4 289 2.45e-15 77.0
MS.gene066635.t1 MTR_7g066030 26.503 366 229 13 5 339 16 372 2.60e-15 77.0
MS.gene066635.t1 MTR_6g048140 27.760 317 164 15 10 293 39 323 3.11e-15 77.0
MS.gene066635.t1 MTR_7g056503 23.441 401 235 16 9 360 20 397 3.17e-15 76.6
MS.gene066635.t1 MTR_2g426090 23.691 401 241 16 8 366 5 382 3.24e-15 76.6
MS.gene066635.t1 MTR_7g062060 23.430 414 240 16 5 361 7 400 3.29e-15 76.6
MS.gene066635.t1 MTR_8g012090 25.364 343 205 14 5 325 11 324 3.35e-15 76.3
MS.gene066635.t1 MTR_4g019990 26.225 408 225 19 6 359 2 387 4.31e-15 76.3
MS.gene066635.t1 MTR_1g068860 24.791 359 223 12 8 341 2 338 4.32e-15 76.3
MS.gene066635.t1 MTR_4g031020 24.682 393 209 12 6 325 11 389 4.44e-15 76.6
MS.gene066635.t1 MTR_3g030350 25.130 386 224 18 10 360 35 390 4.97e-15 76.3
MS.gene066635.t1 MTR_2g426060 24.235 392 224 16 10 361 6 364 5.98e-15 75.9
MS.gene066635.t1 MTR_4g055820 25.936 374 205 15 1 322 6 359 7.34e-15 75.5
MS.gene066635.t1 MTR_7g067680 27.778 342 183 14 10 327 49 350 7.37e-15 75.5
MS.gene066635.t1 MTR_5g043160 25.858 379 204 15 13 328 53 417 7.57e-15 75.9
MS.gene066635.t1 MTR_5g068040 29.487 234 138 9 2 226 8 223 7.67e-15 75.5
MS.gene066635.t1 MTR_5g048160 24.812 399 239 18 10 361 4 388 8.78e-15 75.5
MS.gene066635.t1 MTR_7g017130 25.245 408 239 15 4 366 12 398 1.04e-14 75.1
MS.gene066635.t1 MTR_1g115160 25.228 329 204 15 8 321 20 321 1.04e-14 75.1
MS.gene066635.t1 MTR_4g030110 23.559 399 215 17 1 347 21 381 1.10e-14 75.1
MS.gene066635.t1 MTR_6g086825 24.460 417 238 19 6 366 66 461 1.13e-14 75.5
MS.gene066635.t1 MTR_0242s0060 27.434 339 196 13 6 305 5 332 1.60e-14 74.7
MS.gene066635.t1 MTR_0242s0040 27.434 339 196 13 6 305 5 332 1.60e-14 74.7
MS.gene066635.t1 MTR_2g031680 23.077 351 224 12 10 337 6 333 1.74e-14 74.3
MS.gene066635.t1 MTR_0064s0160 23.544 395 254 15 9 366 41 424 1.84e-14 74.7
MS.gene066635.t1 MTR_7g050480 25.798 376 195 19 7 333 19 359 2.10e-14 74.3
MS.gene066635.t1 MTR_0267s0050 25.886 367 220 18 13 340 9 362 2.34e-14 73.9
MS.gene066635.t1 MTR_4g033495 24.793 363 208 15 10 330 27 366 2.40e-14 74.3
MS.gene066635.t1 MTR_7g061090 30.244 205 112 6 8 185 20 220 2.60e-14 73.9
MS.gene066635.t1 MTR_2g078850 28.428 299 174 14 13 293 33 309 2.64e-14 73.9
MS.gene066635.t1 MTR_8g046310 27.273 396 226 18 3 362 6 375 2.89e-14 73.9
MS.gene066635.t1 MTR_2g104280 24.878 410 248 15 5 366 9 406 2.95e-14 73.9
MS.gene066635.t1 MTR_2g047892 23.656 372 229 14 6 339 18 372 3.33e-14 73.6
MS.gene066635.t1 MTR_3g024040 26.875 320 189 15 18 321 39 329 3.79e-14 73.6
MS.gene066635.t1 MTR_3g058470 26.000 350 163 15 10 321 37 328 4.17e-14 73.2
MS.gene066635.t1 MTR_5g056020 25.058 431 216 21 10 360 17 420 4.19e-14 73.9
MS.gene066635.t1 MTR_8g062660 23.971 413 208 20 5 360 17 380 4.84e-14 73.9
MS.gene066635.t1 MTR_2g426020 23.192 401 240 16 10 365 6 383 5.14e-14 73.2
MS.gene066635.t1 MTR_6g007135 25.402 311 193 10 10 297 26 320 5.38e-14 73.2
MS.gene066635.t1 MTR_7g077070 25.066 379 205 17 6 321 12 374 5.84e-14 73.2
MS.gene066635.t1 MTR_7g078040 27.350 351 194 14 6 305 5 345 6.94e-14 72.8
MS.gene066635.t1 MTR_1g442850 26.667 345 185 15 9 316 4 317 7.78e-14 72.4
MS.gene066635.t1 MTR_4g129160 24.324 370 206 12 10 321 7 360 8.71e-14 72.0
MS.gene066635.t1 MTR_6g055210 24.425 348 200 13 3 307 15 342 1.12e-13 72.4
MS.gene066635.t1 MTR_7g052670 25.532 423 228 19 8 360 19 424 1.18e-13 72.4
MS.gene066635.t1 MTR_1g055200 46.914 81 33 2 104 176 5 83 1.20e-13 67.0
MS.gene066635.t1 MTR_2g028110 25.126 398 221 17 10 366 4 365 1.25e-13 72.0
MS.gene066635.t1 MTR_7g017170 25.203 369 213 13 4 329 12 360 1.29e-13 72.0
MS.gene066635.t1 MTR_7g056710 26.875 320 184 13 9 300 17 314 1.40e-13 71.6
MS.gene066635.t1 MTR_7g057270 26.888 331 183 14 10 298 26 339 1.78e-13 71.6
MS.gene066635.t1 MTR_3g010440 31.061 132 87 2 10 137 26 157 2.13e-13 70.9
MS.gene066635.t1 MTR_3g009300 26.239 343 184 15 13 335 37 330 2.39e-13 70.9
MS.gene066635.t1 MTR_7g066010 27.801 241 144 9 5 218 16 253 2.54e-13 70.9
MS.gene066635.t1 MTR_3g013950 24.257 404 237 17 7 362 4 386 2.86e-13 70.9
MS.gene066635.t1 MTR_2g046860 24.790 238 149 9 101 321 5 229 5.09e-13 69.7
MS.gene066635.t1 MTR_7g078840 25.414 362 202 12 1 305 1 351 5.65e-13 70.1
MS.gene066635.t1 MTR_8g013005 62.069 58 19 2 311 366 1 57 5.86e-13 63.5
MS.gene066635.t1 MTR_5g023570 36.937 111 56 3 9 114 36 137 6.58e-13 66.2
MS.gene066635.t1 MTR_8g041270 25.120 418 241 15 3 366 8 407 6.60e-13 69.7
MS.gene066635.t1 MTR_7g091630 27.419 248 141 11 3 224 25 259 7.16e-13 69.7
MS.gene066635.t1 MTR_7g077990 23.889 360 212 14 3 322 10 347 8.51e-13 69.3
MS.gene066635.t1 MTR_0831s0010 24.513 359 220 11 3 328 43 383 9.44e-13 69.3
MS.gene066635.t1 MTR_7g056820 25.260 384 236 16 10 359 7 373 9.90e-13 69.3
MS.gene066635.t1 MTR_2g065860 25.610 246 142 9 3 216 5 241 1.08e-12 68.9
MS.gene066635.t1 MTR_7g022600 26.166 386 219 15 7 343 20 388 1.14e-12 69.3
MS.gene066635.t1 MTR_6g013270 22.866 328 224 10 10 321 29 343 1.31e-12 68.9
MS.gene066635.t1 MTR_8g063370 24.590 305 181 11 18 291 32 318 1.50e-12 68.6
MS.gene066635.t1 MTR_7g035295 33.333 177 95 6 8 163 14 188 1.61e-12 68.6
MS.gene066635.t1 MTR_6g079810 22.093 430 252 16 1 366 54 464 1.66e-12 68.9
MS.gene066635.t1 MTR_3g096250 26.888 331 168 13 10 326 47 317 2.32e-12 67.8
MS.gene066635.t1 MTR_1g112930 25.559 313 177 15 10 299 25 304 2.63e-12 67.8
MS.gene066635.t1 MTR_1g056710 26.899 316 172 15 10 297 34 318 4.66e-12 67.0
MS.gene066635.t1 MTR_5g046280 29.119 261 139 16 119 360 20 253 4.90e-12 65.9
MS.gene066635.t1 MTR_3g058440 28.870 239 123 10 10 220 35 254 6.19e-12 66.2
MS.gene066635.t1 MTR_8g099460 25.532 329 178 15 7 297 2 301 6.66e-12 66.6
MS.gene066635.t1 MTR_4g080200 36.875 160 79 6 10 161 3 148 7.16e-12 66.2
MS.gene066635.t1 MTR_4g013175 27.068 399 192 21 1 324 1 375 7.89e-12 66.6
MS.gene066635.t1 MTR_7g037670 30.453 243 131 9 7 233 20 240 9.54e-12 65.9
MS.gene066635.t1 MTR_8g101940 27.731 238 120 9 10 220 2 214 1.14e-11 65.9
MS.gene066635.t1 MTR_7g050490 30.457 197 104 8 7 183 5 188 1.24e-11 63.5
MS.gene066635.t1 MTR_2g024100 24.706 340 189 14 25 322 22 336 1.38e-11 65.9
MS.gene066635.t1 MTR_0134s0060 25.899 278 130 12 4 222 6 266 2.15e-11 65.1
MS.gene066635.t1 MTR_0054s0100 21.911 429 246 15 1 363 1 406 2.88e-11 64.7
MS.gene066635.t1 MTR_4g011660 25.410 366 185 18 7 310 16 355 3.22e-11 64.7
MS.gene066635.t1 MTR_4g024870 25.896 251 138 8 1 223 35 265 3.72e-11 64.3
MS.gene066635.t1 MTR_7g052150 30.303 198 112 8 4 183 16 205 4.04e-11 64.3
MS.gene066635.t1 MTR_1g071010 23.724 333 206 13 6 306 11 327 5.18e-11 63.9
MS.gene066635.t1 MTR_7g445750 24.096 332 182 12 6 287 19 330 5.40e-11 63.5
MS.gene066635.t1 MTR_5g024260 25.137 366 217 17 2 325 14 364 6.57e-11 63.5
MS.gene066635.t1 MTR_5g092850 25.205 365 221 13 6 330 12 364 6.64e-11 63.5
MS.gene066635.t1 MTR_2g437110 22.829 403 231 17 8 360 20 392 6.67e-11 63.9
MS.gene066635.t1 MTR_5g097820 26.394 269 144 10 3 232 16 269 7.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066635.t1 AT4G12560 25.474 369 230 13 10 349 4 356 2.51e-23 100
MS.gene066635.t1 AT4G12560 25.474 369 230 13 10 349 4 356 2.51e-23 100
MS.gene066635.t1 AT4G12560 25.474 369 230 13 10 349 4 356 2.51e-23 100
MS.gene066635.t1 AT3G06240 25.182 413 224 14 7 360 33 419 6.90e-22 96.7
MS.gene066635.t1 AT3G23880 28.846 312 186 14 10 302 14 308 9.86e-20 89.7
MS.gene066635.t1 AT3G16590 27.920 351 194 17 10 325 5 331 7.77e-18 84.3
MS.gene066635.t1 AT3G16210 28.618 304 185 11 7 305 2 278 1.54e-16 80.5
MS.gene066635.t1 AT4G22390 25.253 396 224 18 11 364 5 370 4.30e-15 76.6
MS.gene066635.t1 AT4G22390 25.253 396 224 18 11 364 5 370 5.15e-15 76.3
MS.gene066635.t1 AT2G40910 23.988 321 205 11 2 298 54 359 8.12e-15 75.9
MS.gene066635.t1 AT2G40910 22.989 348 226 12 2 322 61 393 8.21e-15 75.9
MS.gene066635.t1 AT4G19940 25.073 343 209 12 10 322 35 359 5.81e-14 73.2
MS.gene066635.t1 AT5G62510 24.556 338 217 14 10 325 44 365 3.10e-13 70.9
MS.gene066635.t1 AT1G33530 26.087 299 185 12 7 294 94 367 3.81e-13 70.9
MS.gene066635.t1 AT3G10240 23.988 346 194 15 10 324 27 334 9.57e-13 69.3
MS.gene066635.t1 AT3G21120 25.000 264 165 13 8 252 1 250 3.75e-12 67.4
MS.gene066635.t1 AT1G11620 23.885 381 237 19 10 363 6 360 4.22e-12 67.0
MS.gene066635.t1 AT2G40925 26.814 317 183 12 10 298 27 322 6.37e-12 67.0
MS.gene066635.t1 AT5G49610 25.272 368 206 20 1 338 1 329 2.94e-11 64.7
MS.gene066635.t1 AT3G17570 23.790 248 164 7 10 249 5 235 4.11e-11 64.3
MS.gene066635.t1 AT1G32420 24.503 302 173 11 3 284 30 296 5.44e-11 63.5
MS.gene066635.t1 AT3G18910 25.316 316 197 15 10 303 8 306 7.24e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCTCTTCAAAATGATTT+TGG 0.149878 4.2:-79710460 MS.gene066635:CDS
ATAAATGGGTTGCTCTTTAA+TGG 0.166197 4.2:-79710568 MS.gene066635:CDS
TTGTCTTTGATTTAATTAAA+AGG 0.216028 4.2:-79710495 MS.gene066635:CDS
TCAAAAGGAAAATATGAATT+AGG 0.227164 4.2:+79710898 None:intergenic
AATACAAAGTGCATTCTTCT+TGG 0.230335 4.2:-79710330 MS.gene066635:CDS
TTGGCTTGTCGTCGTGATTT+AGG 0.260497 4.2:-79710532 MS.gene066635:CDS
TATGATAATCTGTATGGTTT+TGG 0.274613 4.2:-79710754 MS.gene066635:CDS
GATTCCGGTTTGTGGGTATT+TGG 0.277773 4.2:-79710418 MS.gene066635:CDS
AATTAGGAAGCAAGAAATTA+AGG 0.281563 4.2:+79710914 None:intergenic
ACACATACTCGTAGAATTAT+AGG 0.296175 4.2:-79711012 MS.gene066635:CDS
TTCCCATGTTTCATCACATT+TGG 0.328005 4.2:-79710692 MS.gene066635:CDS
GTCTTCCAGACATCTGCTTA+TGG 0.347737 4.2:-79710837 MS.gene066635:CDS
CTTACTTTAGATGCTGATTC+CGG 0.358213 4.2:-79710433 MS.gene066635:CDS
CAGATTATCATATAGTTTGT+TGG 0.362536 4.2:+79710765 None:intergenic
TGTTTCTTAAATCCAGTAGA+TGG 0.370350 4.2:+79710811 None:intergenic
CCATGTTTCATCACATTTGG+AGG 0.371492 4.2:-79710689 MS.gene066635:CDS
ATGGTGAAAGAATTGAAATA+TGG 0.371717 4.2:-79710363 MS.gene066635:CDS
GGGGAAACGTATAAGTTAAC+TGG 0.373785 4.2:+79710274 None:intergenic
TCAAGTGTGTTTGTAAATCA+TGG 0.375911 4.2:-79711092 MS.gene066635:CDS
TCTTTAATGGAGCTATTCAT+TGG 0.389826 4.2:-79710555 MS.gene066635:CDS
CACGACCCTTTGATTTCAAA+AGG 0.394860 4.2:+79710883 None:intergenic
ACTGGCAACCTCAACAAGAT+TGG 0.401622 4.2:+79711132 None:intergenic
GAGTCTCTGCTTTCACTCCC+TGG 0.410331 4.2:-79710115 MS.gene066635:CDS
ATCCAAAGTTGTCATGTATA+CGG 0.413606 4.2:-79710137 MS.gene066635:CDS
TAGATGCTGATTCCGGTTTG+TGG 0.421212 4.2:-79710426 MS.gene066635:CDS
TAATGGAGCTATTCATTGGT+TGG 0.432453 4.2:-79710551 MS.gene066635:CDS
AACAACTGATGGTACTATAT+TGG 0.437822 4.2:-79710215 MS.gene066635:CDS
TTGGCGAATCTCTAAGCATA+TGG 0.443629 4.2:-79710399 MS.gene066635:CDS
AGATGCTGATTCCGGTTTGT+GGG 0.448693 4.2:-79710425 MS.gene066635:CDS
TGCTTATGGAATCCATCTAC+TGG 0.449081 4.2:-79710823 MS.gene066635:CDS
GGATTCCATAAGCAGATGTC+TGG 0.451235 4.2:+79710832 None:intergenic
CTGGCAACCTCAACAAGATT+GGG 0.451878 4.2:+79711133 None:intergenic
AGTCTCTGCTTTCACTCCCT+GGG 0.462176 4.2:-79710114 MS.gene066635:CDS
TGGTGAAGTACAATAGTAAA+GGG 0.475980 4.2:-79710195 MS.gene066635:CDS
AAACTATATGATAATCTGTA+TGG 0.478779 4.2:-79710760 MS.gene066635:CDS
TTGGTGAAGTACAATAGTAA+AGG 0.490065 4.2:-79710196 MS.gene066635:CDS
CCTCCAAATGTGATGAAACA+TGG 0.491416 4.2:+79710689 None:intergenic
CTCCGTATACATGACAACTT+TGG 0.500853 4.2:+79710135 None:intergenic
ATTATTATTGTAACAACTGA+TGG 0.505632 4.2:-79710226 MS.gene066635:CDS
TCTCATTTAGAGATAATATG+TGG 0.506401 4.2:-79710663 MS.gene066635:CDS
TAAACTTACTCATTGTCCCC+AGG 0.510817 4.2:+79710097 None:intergenic
TTCGCCAAATACCCACAAAC+CGG 0.512143 4.2:+79710414 None:intergenic
GGAAGCAAGAAATTAAGGTT+CGG 0.517902 4.2:+79710919 None:intergenic
AAATTGTGAATTTGCAAAGG+TGG 0.527008 4.2:+79711050 None:intergenic
GTATACATGACAACTTTGGA+TGG 0.537797 4.2:+79710139 None:intergenic
AAATCAAAGGGTCGTGTCGA+GGG 0.545514 4.2:-79710876 MS.gene066635:CDS
ATATGGATATTAACTTCTGA+TGG 0.553516 4.2:-79710382 MS.gene066635:CDS
TGGTGAAAGAATTGAAATAT+GGG 0.553900 4.2:-79710362 MS.gene066635:CDS
AAACGTATAAGATACTTCAC+TGG 0.555636 4.2:+79711114 None:intergenic
TTGAAATTGTGAATTTGCAA+AGG 0.560927 4.2:+79711047 None:intergenic
AAACTTACTCATTGTCCCCA+GGG 0.563123 4.2:+79710098 None:intergenic
TGATAATCCCAATCTTGTTG+AGG 0.563764 4.2:-79711140 MS.gene066635:CDS
AATTGTGAATTTGCAAAGGT+GGG 0.564410 4.2:+79711051 None:intergenic
CCACGTAATCATCTCTTGAC+TGG 0.567011 4.2:+79710725 None:intergenic
AATATGTGGAAAGAAATTGA+TGG 0.574366 4.2:-79710649 MS.gene066635:CDS
GAAATCAAAGGGTCGTGTCG+AGG 0.574963 4.2:-79710877 MS.gene066635:CDS
CTCCAAATGTGATGAAACAT+GGG 0.581858 4.2:+79710690 None:intergenic
GATCTATAGATGTTGATGCA+TGG 0.606626 4.2:-79710963 MS.gene066635:CDS
AAGAAATTAAGGTTCGGTGA+AGG 0.609785 4.2:+79710925 None:intergenic
TTGTCGTCGTGATTTAGGAA+TGG 0.626764 4.2:-79710527 MS.gene066635:CDS
ATTGGGATTATCAAATCATG+AGG 0.629275 4.2:+79711150 None:intergenic
TTGGAATCAAAAGAAGACAC+GGG 0.641487 4.2:+79710784 None:intergenic
ATAAGCAGATGTCTGGAAGA+CGG 0.646496 4.2:+79710839 None:intergenic
GTCTCTGCTTTCACTCCCTG+GGG 0.652268 4.2:-79710113 MS.gene066635:CDS
GTTGGAATCAAAAGAAGACA+CGG 0.658295 4.2:+79710783 None:intergenic
TCTACGAGTATGTGTTGCGG+CGG 0.680740 4.2:+79711020 None:intergenic
CCAGTCAAGAGATGATTACG+TGG 0.690893 4.2:-79710725 MS.gene066635:CDS
AATTCTACGAGTATGTGTTG+CGG 0.702642 4.2:+79711017 None:intergenic
CATGGAGAAGAAGAAGACAT+CGG 0.705943 4.2:-79711181 MS.gene066635:CDS
GTCAAGAGATGATTACGTGG+TGG 0.708970 4.2:-79710722 MS.gene066635:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTCTTTGATTTAATTAAA+AGG - chr4.2:79710787-79710806 MS.gene066635:CDS 15.0%
!!! TTTGTTTTTTTGAAAGATAA+GGG + chr4.2:79710668-79710687 None:intergenic 15.0%
!!! TTTTGTTTTTTTGAAAGATA+AGG + chr4.2:79710669-79710688 None:intergenic 15.0%
!! AAACTATATGATAATCTGTA+TGG - chr4.2:79710522-79710541 MS.gene066635:CDS 20.0%
!! ATTATTATTGTAACAACTGA+TGG - chr4.2:79711056-79711075 MS.gene066635:CDS 20.0%
!! TCAAAAGGAAAATATGAATT+AGG + chr4.2:79710387-79710406 None:intergenic 20.0%
!! TTATGTGATCACAAAAATAA+GGG + chr4.2:79710698-79710717 None:intergenic 20.0%
!! TTTATGTGATCACAAAAATA+AGG + chr4.2:79710699-79710718 None:intergenic 20.0%
!!! AATAATTTCACCATTTTTTG+TGG + chr4.2:79711042-79711061 None:intergenic 20.0%
!!! ATTTTCCTTTTGAAATCAAA+GGG - chr4.2:79710394-79710413 MS.gene066635:CDS 20.0%
!!! ATTTTTGTGATCACATAAAT+GGG - chr4.2:79710700-79710719 MS.gene066635:CDS 20.0%
!!! TATTTTCCTTTTGAAATCAA+AGG - chr4.2:79710393-79710412 MS.gene066635:CDS 20.0%
!!! TATTTTTGTGATCACATAAA+TGG - chr4.2:79710699-79710718 MS.gene066635:CDS 20.0%
! AATATGTGGAAAGAAATTGA+TGG - chr4.2:79710633-79710652 MS.gene066635:CDS 25.0%
! AATTAGGAAGCAAGAAATTA+AGG + chr4.2:79710371-79710390 None:intergenic 25.0%
! ATATGGATATTAACTTCTGA+TGG - chr4.2:79710900-79710919 MS.gene066635:CDS 25.0%
! ATGGTGAAAGAATTGAAATA+TGG - chr4.2:79710919-79710938 MS.gene066635:CDS 25.0%
! TATGTGATCACAAAAATAAG+GGG + chr4.2:79710697-79710716 None:intergenic 25.0%
! TCTCATTTAGAGATAATATG+TGG - chr4.2:79710619-79710638 MS.gene066635:CDS 25.0%
! TGGTGAAAGAATTGAAATAT+GGG - chr4.2:79710920-79710939 MS.gene066635:CDS 25.0%
! TTGAAATTGTGAATTTGCAA+AGG + chr4.2:79710238-79710257 None:intergenic 25.0%
!! ATACCTCTTCAAAATGATTT+TGG - chr4.2:79710822-79710841 MS.gene066635:CDS 25.0%
!! CAGATTATCATATAGTTTGT+TGG + chr4.2:79710520-79710539 None:intergenic 25.0%
!! TATGATAATCTGTATGGTTT+TGG - chr4.2:79710528-79710547 MS.gene066635:CDS 25.0%
AAACGTATAAGATACTTCAC+TGG + chr4.2:79710171-79710190 None:intergenic 30.0%
AAATTGTGAATTTGCAAAGG+TGG + chr4.2:79710235-79710254 None:intergenic 30.0%
AACAACTGATGGTACTATAT+TGG - chr4.2:79711067-79711086 MS.gene066635:CDS 30.0%
AATACAAAGTGCATTCTTCT+TGG - chr4.2:79710952-79710971 MS.gene066635:CDS 30.0%
AATTGTGAATTTGCAAAGGT+GGG + chr4.2:79710234-79710253 None:intergenic 30.0%
ACACATACTCGTAGAATTAT+AGG - chr4.2:79710270-79710289 MS.gene066635:CDS 30.0%
ATCCAAAGTTGTCATGTATA+CGG - chr4.2:79711145-79711164 MS.gene066635:CDS 30.0%
ATTGGGATTATCAAATCATG+AGG + chr4.2:79710135-79710154 None:intergenic 30.0%
TCAAGTGTGTTTGTAAATCA+TGG - chr4.2:79710190-79710209 MS.gene066635:CDS 30.0%
TCTTTAATGGAGCTATTCAT+TGG - chr4.2:79710727-79710746 MS.gene066635:CDS 30.0%
TGGTGAAGTACAATAGTAAA+GGG - chr4.2:79711087-79711106 MS.gene066635:CDS 30.0%
TGTTTCTTAAATCCAGTAGA+TGG + chr4.2:79710474-79710493 None:intergenic 30.0%
TTGGTGAAGTACAATAGTAA+AGG - chr4.2:79711086-79711105 MS.gene066635:CDS 30.0%
!! ATAAATGGGTTGCTCTTTAA+TGG - chr4.2:79710714-79710733 MS.gene066635:CDS 30.0%
!!! ATTTTTTGTGGAGTACATAG+GGG + chr4.2:79711030-79711049 None:intergenic 30.0%
!!! CATTTTTTGTGGAGTACATA+GGG + chr4.2:79711031-79711050 None:intergenic 30.0%
AATTCTACGAGTATGTGTTG+CGG + chr4.2:79710268-79710287 None:intergenic 35.0%
CCTATGTACTCCACAAAAAA+TGG - chr4.2:79711029-79711048 MS.gene066635:CDS 35.0%
CTCCAAATGTGATGAAACAT+GGG + chr4.2:79710595-79710614 None:intergenic 35.0%
GATCTATAGATGTTGATGCA+TGG - chr4.2:79710319-79710338 MS.gene066635:CDS 35.0%
GGAAGCAAGAAATTAAGGTT+CGG + chr4.2:79710366-79710385 None:intergenic 35.0%
GTATACATGACAACTTTGGA+TGG + chr4.2:79711146-79711165 None:intergenic 35.0%
GTTGGAATCAAAAGAAGACA+CGG + chr4.2:79710502-79710521 None:intergenic 35.0%
TAATGGAGCTATTCATTGGT+TGG - chr4.2:79710731-79710750 MS.gene066635:CDS 35.0%
TGATAATCCCAATCTTGTTG+AGG - chr4.2:79710142-79710161 MS.gene066635:CDS 35.0%
TTCCCATGTTTCATCACATT+TGG - chr4.2:79710590-79710609 MS.gene066635:CDS 35.0%
TTGGAATCAAAAGAAGACAC+GGG + chr4.2:79710501-79710520 None:intergenic 35.0%
! CCTCTTCAAAATGATTTTGG+CGG - chr4.2:79710825-79710844 MS.gene066635:CDS 35.0%
!! AAGAAATTAAGGTTCGGTGA+AGG + chr4.2:79710360-79710379 None:intergenic 35.0%
!! CTTACTTTAGATGCTGATTC+CGG - chr4.2:79710849-79710868 MS.gene066635:CDS 35.0%
!!! CCATTTTTTGTGGAGTACAT+AGG + chr4.2:79711032-79711051 None:intergenic 35.0%
ATAAGCAGATGTCTGGAAGA+CGG + chr4.2:79710446-79710465 None:intergenic 40.0%
CCATGTTTCATCACATTTGG+AGG - chr4.2:79710593-79710612 MS.gene066635:CDS 40.0%
CCTCCAAATGTGATGAAACA+TGG + chr4.2:79710596-79710615 None:intergenic 40.0%
CTCCGTATACATGACAACTT+TGG + chr4.2:79711150-79711169 None:intergenic 40.0%
GGGGAAACGTATAAGTTAAC+TGG + chr4.2:79711011-79711030 None:intergenic 40.0%
TGCTTATGGAATCCATCTAC+TGG - chr4.2:79710459-79710478 MS.gene066635:CDS 40.0%
TTGGCGAATCTCTAAGCATA+TGG - chr4.2:79710883-79710902 MS.gene066635:CDS 40.0%
TTGTCGTCGTGATTTAGGAA+TGG - chr4.2:79710755-79710774 MS.gene066635:CDS 40.0%
! CACGACCCTTTGATTTCAAA+AGG + chr4.2:79710402-79710421 None:intergenic 40.0%
!! CCGCCAAAATCATTTTGAAG+AGG + chr4.2:79710828-79710847 None:intergenic 40.0%
AAATCAAAGGGTCGTGTCGA+GGG - chr4.2:79710406-79710425 MS.gene066635:CDS 45.0%
ACTGGCAACCTCAACAAGAT+TGG + chr4.2:79710153-79710172 None:intergenic 45.0%
CCACGTAATCATCTCTTGAC+TGG + chr4.2:79710560-79710579 None:intergenic 45.0%
CCAGTCAAGAGATGATTACG+TGG - chr4.2:79710557-79710576 MS.gene066635:CDS 45.0%
CTGGCAACCTCAACAAGATT+GGG + chr4.2:79710152-79710171 None:intergenic 45.0%
GGATTCCATAAGCAGATGTC+TGG + chr4.2:79710453-79710472 None:intergenic 45.0%
GTCAAGAGATGATTACGTGG+TGG - chr4.2:79710560-79710579 MS.gene066635:CDS 45.0%
GTCTTCCAGACATCTGCTTA+TGG - chr4.2:79710445-79710464 MS.gene066635:CDS 45.0%
TTCGCCAAATACCCACAAAC+CGG + chr4.2:79710871-79710890 None:intergenic 45.0%
! GATTCCGGTTTGTGGGTATT+TGG - chr4.2:79710864-79710883 MS.gene066635:CDS 45.0%
!! AGATGCTGATTCCGGTTTGT+GGG - chr4.2:79710857-79710876 MS.gene066635:CDS 45.0%
!! TAGATGCTGATTCCGGTTTG+TGG - chr4.2:79710856-79710875 MS.gene066635:CDS 45.0%
!! TTGGCTTGTCGTCGTGATTT+AGG - chr4.2:79710750-79710769 MS.gene066635:CDS 45.0%
AGTCTCTGCTTTCACTCCCT+GGG - chr4.2:79711168-79711187 MS.gene066635:CDS 50.0%
GAAATCAAAGGGTCGTGTCG+AGG - chr4.2:79710405-79710424 MS.gene066635:CDS 50.0%
TCTACGAGTATGTGTTGCGG+CGG + chr4.2:79710265-79710284 None:intergenic 50.0%
GAGTCTCTGCTTTCACTCCC+TGG - chr4.2:79711167-79711186 MS.gene066635:CDS 55.0%
GTCTCTGCTTTCACTCCCTG+GGG - chr4.2:79711169-79711188 MS.gene066635:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 79710102 79711202 79710102 ID=MS.gene066635
chr4.2 mRNA 79710102 79711202 79710102 ID=MS.gene066635.t1;Parent=MS.gene066635
chr4.2 exon 79710102 79711202 79710102 ID=MS.gene066635.t1.exon1;Parent=MS.gene066635.t1
chr4.2 CDS 79710102 79711202 79710102 ID=cds.MS.gene066635.t1;Parent=MS.gene066635.t1
Gene Sequence

>MS.gene066635

ATGGAGAAGAAGAAGACATCGGTGTATCTTCCTCATGATTTGATAATCCCAATCTTGTTGAGGTTGCCAGTGAAGTATCTTATACGTTTCAAGTGTGTTTGTAAATCATGGTTTTCTATTATCTCTGATCCCACCTTTGCAAATTCACAATTTCAATTCACCGCCGCAACACATACTCGTAGAATTATAGGCTTATCAGCTTTATCTCATGAAATTCGATCTATAGATGTTGATGCATGGCTTAACGATGATCTTCCTTCACCGAACCTTAATTTCTTGCTTCCTAATTCATATTTTCCTTTTGAAATCAAAGGGTCGTGTCGAGGGTTTTTATTTTTATACCGTCTTCCAGACATCTGCTTATGGAATCCATCTACTGGATTTAAGAAACAAATACCCGTGTCTTCTTTTGATTCCAACAAACTATATGATAATCTGTATGGTTTTGGTTATGACCAGTCAAGAGATGATTACGTGGTGGTTGTATTTTCCCATGTTTCATCACATTTGGAGGTTTTCTCATTTAGAGATAATATGTGGAAAGAAATTGATGGTATTCTATTCCCTTATCTTTCAAAAAAACAAAAAAAATCCCCTTATTTTTGTGATCACATAAATGGGTTGCTCTTTAATGGAGCTATTCATTGGTTGGCTTGTCGTCGTGATTTAGGAATGGATGTTATTATTGTCTTTGATTTAATTAAAAGGAAACTGATTGAAATACCTCTTCAAAATGATTTTGGCGGACTTACTTTAGATGCTGATTCCGGTTTGTGGGTATTTGGCGAATCTCTAAGCATATGGATATTAACTTCTGATGGTGAAAGAATTGAAATATGGGTGTTGAAAGAATACAAAGTGCATTCTTCTTGGAATAAAACTCTTGTTCTTTCTGTTGATTTCATTCCAGTTAACTTATACGTTTCCCCTATGTACTCCACAAAAAATGGTGAAATTATTATTGTAACAACTGATGGTACTATATTGGTGAAGTACAATAGTAAAGGGCAGCTGTTAGAGCATCAATCATTCTGTAACAGTCCATCCAAAGTTGTCATGTATACGGAGTCTCTGCTTTCACTCCCTGGGGACAATGAGTAA

Protein sequence

>MS.gene066635.t1

MEKKKTSVYLPHDLIIPILLRLPVKYLIRFKCVCKSWFSIISDPTFANSQFQFTAATHTRRIIGLSALSHEIRSIDVDAWLNDDLPSPNLNFLLPNSYFPFEIKGSCRGFLFLYRLPDICLWNPSTGFKKQIPVSSFDSNKLYDNLYGFGYDQSRDDYVVVVFSHVSSHLEVFSFRDNMWKEIDGILFPYLSKKQKKSPYFCDHINGLLFNGAIHWLACRRDLGMDVIIVFDLIKRKLIEIPLQNDFGGLTLDADSGLWVFGESLSIWILTSDGERIEIWVLKEYKVHSSWNKTLVLSVDFIPVNLYVSPMYSTKNGEIIIVTTDGTILVKYNSKGQLLEHQSFCNSPSKVVMYTESLLSLPGDNE