Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034681.t1 | XP_013467794.1 | 69.3 | 254 | 69 | 3 | 3 | 250 | 125 | 375 | 6.60E-90 | 340.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034681.t1 | Q9SU30 | 32.8 | 198 | 113 | 9 | 1 | 180 | 108 | 303 | 8.6e-14 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034681.t1 | A0A072VJR2 | 69.3 | 254 | 69 | 3 | 3 | 250 | 125 | 375 | 4.8e-90 | 340.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034681.t1 | MTR_1g055135 | 69.291 | 254 | 69 | 3 | 3 | 250 | 125 | 375 | 3.82e-114 | 332 |
MS.gene034681.t1 | MTR_1g055175 | 70.103 | 194 | 56 | 2 | 59 | 250 | 8 | 201 | 5.99e-92 | 270 |
MS.gene034681.t1 | MTR_1g055195 | 57.255 | 255 | 87 | 6 | 3 | 250 | 239 | 478 | 6.55e-87 | 266 |
MS.gene034681.t1 | MTR_4g118370 | 56.504 | 246 | 84 | 5 | 3 | 247 | 34 | 257 | 7.88e-85 | 253 |
MS.gene034681.t1 | MTR_5g097210 | 58.704 | 247 | 94 | 6 | 3 | 247 | 120 | 360 | 2.59e-83 | 253 |
MS.gene034681.t1 | MTR_4g117750 | 54.902 | 255 | 102 | 5 | 3 | 249 | 109 | 358 | 3.51e-78 | 244 |
MS.gene034681.t1 | MTR_4g117750 | 50.909 | 110 | 50 | 3 | 142 | 248 | 373 | 481 | 5.57e-24 | 100 |
MS.gene034681.t1 | MTR_1g055165 | 53.600 | 250 | 60 | 4 | 3 | 250 | 123 | 318 | 2.40e-76 | 234 |
MS.gene034681.t1 | MTR_1g055250 | 62.319 | 207 | 73 | 4 | 26 | 230 | 46 | 249 | 6.75e-74 | 228 |
MS.gene034681.t1 | MTR_4g117720 | 53.462 | 260 | 102 | 10 | 3 | 250 | 126 | 378 | 3.08e-73 | 228 |
MS.gene034681.t1 | MTR_6g060650 | 50.775 | 258 | 103 | 10 | 3 | 249 | 128 | 372 | 1.46e-67 | 213 |
MS.gene034681.t1 | MTR_3g103020 | 50.973 | 257 | 108 | 8 | 3 | 250 | 131 | 378 | 6.89e-67 | 212 |
MS.gene034681.t1 | MTR_4g117850 | 50.000 | 248 | 111 | 7 | 3 | 243 | 132 | 373 | 1.15e-65 | 208 |
MS.gene034681.t1 | MTR_5g070088 | 48.594 | 249 | 119 | 5 | 1 | 244 | 135 | 379 | 1.02e-64 | 206 |
MS.gene034681.t1 | MTR_5g070080 | 49.412 | 255 | 114 | 10 | 3 | 250 | 140 | 386 | 7.37e-64 | 204 |
MS.gene034681.t1 | MTR_5g070130 | 45.627 | 263 | 124 | 9 | 1 | 250 | 121 | 377 | 4.39e-63 | 202 |
MS.gene034681.t1 | MTR_4g117770 | 48.438 | 256 | 113 | 8 | 3 | 249 | 121 | 366 | 1.01e-62 | 201 |
MS.gene034681.t1 | MTR_4g117810 | 48.438 | 256 | 113 | 8 | 3 | 249 | 121 | 366 | 1.01e-62 | 201 |
MS.gene034681.t1 | MTR_4g023130 | 48.235 | 255 | 103 | 8 | 3 | 249 | 79 | 312 | 3.11e-62 | 197 |
MS.gene034681.t1 | MTR_4g109280 | 52.174 | 253 | 108 | 10 | 3 | 250 | 115 | 359 | 7.38e-62 | 198 |
MS.gene034681.t1 | MTR_4g109270 | 48.819 | 254 | 113 | 9 | 3 | 250 | 122 | 364 | 2.75e-61 | 197 |
MS.gene034681.t1 | MTR_4g023080 | 47.451 | 255 | 105 | 8 | 3 | 249 | 120 | 353 | 5.06e-60 | 193 |
MS.gene034681.t1 | MTR_3g034180 | 46.718 | 259 | 120 | 10 | 3 | 249 | 236 | 488 | 8.13e-59 | 194 |
MS.gene034681.t1 | MTR_4g117780 | 46.484 | 256 | 118 | 8 | 3 | 249 | 121 | 366 | 1.54e-58 | 190 |
MS.gene034681.t1 | MTR_4g122850 | 45.283 | 265 | 118 | 10 | 1 | 250 | 112 | 364 | 2.87e-58 | 189 |
MS.gene034681.t1 | MTR_4g116330 | 45.276 | 254 | 123 | 9 | 3 | 250 | 137 | 380 | 7.35e-58 | 188 |
MS.gene034681.t1 | MTR_4g118380 | 48.729 | 236 | 95 | 9 | 3 | 221 | 130 | 356 | 2.95e-57 | 186 |
MS.gene034681.t1 | MTR_3g034130 | 47.967 | 246 | 111 | 9 | 3 | 236 | 122 | 362 | 3.74e-57 | 186 |
MS.gene034681.t1 | MTR_4g094365 | 46.094 | 256 | 120 | 8 | 3 | 250 | 119 | 364 | 1.35e-56 | 185 |
MS.gene034681.t1 | MTR_3g034160 | 46.538 | 260 | 119 | 8 | 3 | 249 | 122 | 374 | 2.30e-53 | 177 |
MS.gene034681.t1 | MTR_4g021785 | 43.023 | 258 | 115 | 8 | 3 | 250 | 120 | 355 | 7.82e-53 | 175 |
MS.gene034681.t1 | MTR_4g116320 | 47.465 | 217 | 107 | 5 | 34 | 247 | 43 | 255 | 2.83e-52 | 170 |
MS.gene034681.t1 | MTR_4g023150 | 43.307 | 254 | 120 | 9 | 3 | 248 | 121 | 358 | 5.97e-52 | 172 |
MS.gene034681.t1 | MTR_4g023090 | 41.455 | 275 | 116 | 10 | 3 | 249 | 128 | 385 | 7.27e-52 | 173 |
MS.gene034681.t1 | MTR_4g023190 | 43.922 | 255 | 116 | 11 | 3 | 248 | 121 | 357 | 7.78e-52 | 172 |
MS.gene034681.t1 | MTR_4g023070 | 43.609 | 266 | 121 | 9 | 3 | 249 | 114 | 369 | 1.61e-51 | 172 |
MS.gene034681.t1 | MTR_8g032390 | 47.287 | 258 | 108 | 14 | 1 | 244 | 126 | 369 | 9.05e-51 | 170 |
MS.gene034681.t1 | MTR_8g433040 | 44.015 | 259 | 113 | 10 | 3 | 250 | 127 | 364 | 1.05e-50 | 169 |
MS.gene034681.t1 | MTR_8g032380 | 44.015 | 259 | 113 | 10 | 3 | 250 | 127 | 364 | 1.05e-50 | 169 |
MS.gene034681.t1 | MTR_4g118400 | 45.528 | 246 | 95 | 13 | 3 | 244 | 84 | 294 | 1.38e-50 | 167 |
MS.gene034681.t1 | MTR_4g117870 | 40.000 | 250 | 107 | 7 | 3 | 250 | 59 | 267 | 8.46e-50 | 164 |
MS.gene034681.t1 | MTR_4g023200 | 42.520 | 254 | 122 | 9 | 3 | 248 | 121 | 358 | 1.44e-49 | 166 |
MS.gene034681.t1 | MTR_4g023120 | 41.241 | 274 | 118 | 10 | 3 | 250 | 114 | 370 | 2.54e-49 | 166 |
MS.gene034681.t1 | MTR_7g079400 | 41.961 | 255 | 138 | 5 | 3 | 250 | 86 | 337 | 2.60e-49 | 165 |
MS.gene034681.t1 | MTR_4g023380 | 39.085 | 284 | 105 | 10 | 3 | 250 | 128 | 379 | 6.65e-49 | 165 |
MS.gene034681.t1 | MTR_8g433030 | 50.000 | 234 | 92 | 13 | 22 | 244 | 117 | 336 | 1.76e-48 | 163 |
MS.gene034681.t1 | MTR_8g102520 | 40.157 | 254 | 140 | 5 | 3 | 250 | 75 | 322 | 1.99e-47 | 160 |
MS.gene034681.t1 | MTR_7g079370 | 41.176 | 255 | 137 | 5 | 3 | 245 | 98 | 351 | 2.04e-45 | 155 |
MS.gene034681.t1 | MTR_8g040935 | 46.829 | 205 | 97 | 7 | 54 | 250 | 8 | 208 | 3.70e-44 | 148 |
MS.gene034681.t1 | MTR_6g463430 | 45.631 | 206 | 98 | 9 | 50 | 250 | 6 | 202 | 2.51e-41 | 140 |
MS.gene034681.t1 | MTR_4g116330 | 39.442 | 251 | 103 | 9 | 3 | 250 | 137 | 341 | 1.66e-40 | 142 |
MS.gene034681.t1 | MTR_4g117530 | 41.333 | 225 | 86 | 7 | 28 | 250 | 73 | 253 | 3.11e-39 | 137 |
MS.gene034681.t1 | MTR_4g023440 | 37.402 | 254 | 99 | 7 | 3 | 249 | 131 | 331 | 5.11e-39 | 138 |
MS.gene034681.t1 | MTR_4g118360 | 56.140 | 114 | 48 | 2 | 138 | 250 | 14 | 126 | 3.57e-36 | 125 |
MS.gene034681.t1 | MTR_4g121580 | 38.039 | 255 | 118 | 12 | 1 | 246 | 126 | 349 | 1.51e-32 | 122 |
MS.gene034681.t1 | MTR_7g079420 | 35.849 | 265 | 114 | 10 | 3 | 250 | 919 | 1144 | 2.16e-31 | 122 |
MS.gene034681.t1 | MTR_2g048580 | 34.524 | 252 | 133 | 9 | 3 | 250 | 119 | 342 | 1.90e-30 | 116 |
MS.gene034681.t1 | MTR_4g114700 | 36.323 | 223 | 84 | 9 | 3 | 218 | 22 | 193 | 9.79e-30 | 112 |
MS.gene034681.t1 | MTR_5g023000 | 61.053 | 95 | 34 | 2 | 158 | 250 | 6 | 99 | 1.16e-29 | 107 |
MS.gene034681.t1 | MTR_4g117430 | 44.079 | 152 | 71 | 4 | 1 | 151 | 14 | 152 | 3.72e-28 | 105 |
MS.gene034681.t1 | MTR_8g013010 | 47.436 | 156 | 62 | 7 | 3 | 151 | 167 | 309 | 6.62e-27 | 106 |
MS.gene034681.t1 | MTR_7g079450 | 41.606 | 137 | 78 | 2 | 114 | 250 | 3 | 137 | 1.06e-25 | 98.6 |
MS.gene034681.t1 | MTR_1g055145 | 62.195 | 82 | 31 | 0 | 86 | 167 | 121 | 202 | 1.44e-23 | 96.7 |
MS.gene034681.t1 | MTR_4g122860 | 35.751 | 193 | 88 | 8 | 64 | 249 | 156 | 319 | 2.92e-23 | 96.7 |
MS.gene034681.t1 | MTR_8g098830 | 37.349 | 166 | 97 | 4 | 62 | 224 | 37 | 198 | 7.62e-23 | 93.6 |
MS.gene034681.t1 | MTR_1g055200 | 65.152 | 66 | 21 | 1 | 3 | 68 | 22 | 85 | 5.99e-21 | 85.1 |
MS.gene034681.t1 | MTR_4g133170 | 28.571 | 217 | 130 | 6 | 1 | 200 | 105 | 313 | 1.35e-18 | 84.3 |
MS.gene034681.t1 | MTR_2g026010 | 30.769 | 195 | 118 | 5 | 1 | 180 | 105 | 297 | 1.80e-18 | 84.0 |
MS.gene034681.t1 | MTR_2g025420 | 30.500 | 200 | 108 | 7 | 3 | 180 | 132 | 322 | 2.98e-18 | 83.6 |
MS.gene034681.t1 | MTR_4g070550 | 31.122 | 196 | 106 | 7 | 1 | 176 | 125 | 311 | 1.31e-17 | 81.6 |
MS.gene034681.t1 | MTR_1g068835 | 30.041 | 243 | 128 | 12 | 1 | 216 | 105 | 332 | 2.13e-17 | 80.9 |
MS.gene034681.t1 | MTR_7g117720 | 34.161 | 161 | 91 | 5 | 90 | 245 | 122 | 272 | 2.57e-17 | 79.3 |
MS.gene034681.t1 | MTR_7g117720 | 47.619 | 84 | 39 | 3 | 1 | 81 | 103 | 184 | 2.28e-14 | 71.2 |
MS.gene034681.t1 | MTR_6g034720 | 42.276 | 123 | 61 | 3 | 13 | 130 | 53 | 170 | 1.02e-16 | 76.6 |
MS.gene034681.t1 | MTR_0667s0010 | 30.612 | 196 | 113 | 7 | 1 | 180 | 118 | 306 | 1.14e-16 | 79.0 |
MS.gene034681.t1 | MTR_3g083010 | 28.426 | 197 | 119 | 5 | 1 | 181 | 132 | 322 | 2.58e-16 | 77.8 |
MS.gene034681.t1 | MTR_2g021050 | 30.994 | 171 | 101 | 4 | 20 | 180 | 122 | 285 | 3.52e-16 | 77.4 |
MS.gene034681.t1 | MTR_2g028140 | 28.452 | 239 | 135 | 9 | 1 | 217 | 131 | 355 | 6.60e-16 | 76.6 |
MS.gene034681.t1 | MTR_8g099460 | 31.579 | 190 | 111 | 7 | 3 | 180 | 119 | 301 | 9.83e-16 | 76.3 |
MS.gene034681.t1 | MTR_2g426060 | 29.798 | 198 | 109 | 7 | 3 | 180 | 125 | 312 | 2.20e-15 | 75.1 |
MS.gene034681.t1 | MTR_2g028160 | 30.570 | 193 | 116 | 6 | 1 | 180 | 130 | 317 | 5.93e-15 | 73.9 |
MS.gene034681.t1 | MTR_2g028130 | 28.085 | 235 | 143 | 9 | 1 | 217 | 130 | 356 | 6.75e-15 | 73.9 |
MS.gene034681.t1 | MTR_2g024100 | 28.205 | 195 | 113 | 5 | 1 | 176 | 120 | 306 | 1.32e-14 | 72.8 |
MS.gene034681.t1 | MTR_5g057790 | 29.730 | 185 | 105 | 8 | 3 | 180 | 164 | 330 | 3.62e-14 | 71.6 |
MS.gene034681.t1 | MTR_4g116340 | 42.478 | 113 | 45 | 5 | 3 | 105 | 132 | 234 | 4.06e-14 | 70.1 |
MS.gene034681.t1 | MTR_3g009310 | 31.892 | 185 | 101 | 8 | 3 | 180 | 160 | 326 | 5.45e-14 | 71.2 |
MS.gene034681.t1 | MTR_5g097680 | 29.245 | 212 | 113 | 8 | 2 | 180 | 158 | 365 | 6.55e-14 | 70.9 |
MS.gene034681.t1 | MTR_8g013005 | 52.459 | 61 | 26 | 2 | 191 | 250 | 1 | 59 | 2.02e-13 | 63.5 |
MS.gene034681.t1 | MTR_5g046280 | 30.337 | 178 | 107 | 7 | 1 | 176 | 20 | 182 | 2.17e-13 | 68.2 |
MS.gene034681.t1 | MTR_4g023430 | 46.341 | 82 | 40 | 2 | 173 | 250 | 141 | 222 | 2.91e-13 | 67.4 |
MS.gene034681.t1 | MTR_2g426070 | 30.052 | 193 | 114 | 7 | 1 | 180 | 129 | 313 | 3.06e-13 | 68.9 |
MS.gene034681.t1 | MTR_5g046300 | 30.337 | 178 | 107 | 7 | 1 | 176 | 117 | 279 | 4.39e-13 | 68.2 |
MS.gene034681.t1 | MTR_5g046290 | 30.337 | 178 | 107 | 7 | 1 | 176 | 117 | 279 | 4.39e-13 | 68.2 |
MS.gene034681.t1 | MTR_2g031680 | 28.814 | 236 | 141 | 7 | 1 | 216 | 105 | 333 | 7.00e-13 | 67.8 |
MS.gene034681.t1 | MTR_7g070440 | 28.641 | 206 | 114 | 9 | 1 | 186 | 119 | 311 | 7.12e-13 | 67.8 |
MS.gene034681.t1 | MTR_3g007360 | 29.717 | 212 | 107 | 11 | 3 | 196 | 167 | 354 | 7.64e-13 | 67.8 |
MS.gene034681.t1 | MTR_3g006670 | 29.353 | 201 | 110 | 10 | 3 | 192 | 164 | 343 | 7.91e-13 | 67.8 |
MS.gene034681.t1 | MTR_3g007410 | 29.327 | 208 | 113 | 10 | 3 | 196 | 167 | 354 | 8.88e-13 | 67.8 |
MS.gene034681.t1 | MTR_2g021770 | 28.102 | 274 | 161 | 12 | 3 | 247 | 141 | 407 | 9.82e-13 | 67.4 |
MS.gene034681.t1 | MTR_2g104340 | 27.018 | 285 | 155 | 13 | 1 | 247 | 127 | 396 | 1.35e-12 | 67.0 |
MS.gene034681.t1 | MTR_2g104280 | 26.117 | 291 | 153 | 13 | 1 | 248 | 135 | 406 | 1.59e-12 | 67.0 |
MS.gene034681.t1 | MTR_3g014540 | 30.526 | 190 | 102 | 10 | 4 | 180 | 143 | 315 | 1.78e-12 | 66.6 |
MS.gene034681.t1 | MTR_5g007610 | 33.168 | 202 | 106 | 11 | 3 | 189 | 153 | 340 | 3.01e-12 | 65.9 |
MS.gene034681.t1 | MTR_2g031640 | 28.061 | 196 | 119 | 6 | 1 | 180 | 106 | 295 | 5.25e-12 | 65.1 |
MS.gene034681.t1 | MTR_2g031720 | 28.571 | 196 | 118 | 6 | 1 | 180 | 110 | 299 | 6.62e-12 | 65.1 |
MS.gene034681.t1 | MTR_2g425980 | 29.293 | 198 | 115 | 6 | 1 | 180 | 122 | 312 | 6.70e-12 | 65.1 |
MS.gene034681.t1 | MTR_4g014370 | 25.373 | 268 | 167 | 13 | 1 | 243 | 146 | 405 | 7.28e-12 | 65.1 |
MS.gene034681.t1 | MTR_6g021880 | 32.787 | 183 | 106 | 9 | 1 | 176 | 140 | 312 | 7.58e-12 | 64.7 |
MS.gene034681.t1 | MTR_5g011200 | 29.231 | 195 | 118 | 8 | 3 | 191 | 134 | 314 | 8.73e-12 | 64.7 |
MS.gene034681.t1 | MTR_2g024110 | 25.628 | 199 | 118 | 7 | 1 | 181 | 108 | 294 | 1.40e-11 | 63.9 |
MS.gene034681.t1 | MTR_3g023930 | 30.286 | 175 | 95 | 8 | 3 | 176 | 146 | 294 | 1.50e-11 | 63.9 |
MS.gene034681.t1 | MTR_5g069120 | 51.316 | 76 | 27 | 3 | 3 | 68 | 102 | 177 | 1.60e-11 | 61.6 |
MS.gene034681.t1 | MTR_1g068860 | 30.457 | 197 | 112 | 10 | 1 | 180 | 105 | 293 | 2.16e-11 | 63.5 |
MS.gene034681.t1 | MTR_2g426090 | 26.804 | 194 | 121 | 7 | 1 | 180 | 124 | 310 | 2.26e-11 | 63.5 |
MS.gene034681.t1 | MTR_3g011020 | 31.288 | 163 | 87 | 9 | 29 | 180 | 157 | 305 | 2.37e-11 | 63.2 |
MS.gene034681.t1 | MTR_2g038680 | 24.275 | 276 | 164 | 10 | 3 | 243 | 142 | 407 | 2.82e-11 | 63.2 |
MS.gene034681.t1 | MTR_2g021155 | 30.601 | 183 | 107 | 9 | 3 | 176 | 711 | 882 | 3.34e-11 | 63.5 |
MS.gene034681.t1 | MTR_7g070880 | 24.460 | 278 | 168 | 11 | 3 | 243 | 149 | 421 | 3.44e-11 | 62.8 |
MS.gene034681.t1 | MTR_3g013770 | 31.053 | 190 | 101 | 10 | 3 | 180 | 152 | 323 | 3.64e-11 | 62.8 |
MS.gene034681.t1 | MTR_3g014570 | 28.342 | 187 | 110 | 7 | 4 | 180 | 143 | 315 | 4.94e-11 | 62.4 |
MS.gene034681.t1 | MTR_3g009300 | 29.381 | 194 | 106 | 9 | 3 | 188 | 121 | 291 | 4.95e-11 | 62.4 |
MS.gene034681.t1 | MTR_3g007430 | 30.319 | 188 | 106 | 10 | 3 | 180 | 156 | 328 | 5.94e-11 | 62.0 |
MS.gene034681.t1 | MTR_7g407070 | 29.534 | 193 | 104 | 8 | 3 | 176 | 154 | 333 | 5.97e-11 | 62.0 |
MS.gene034681.t1 | MTR_2g021190 | 31.868 | 182 | 104 | 8 | 3 | 176 | 135 | 304 | 6.03e-11 | 62.0 |
MS.gene034681.t1 | MTR_4g134560 | 24.352 | 193 | 123 | 7 | 3 | 189 | 196 | 371 | 6.54e-11 | 62.0 |
MS.gene034681.t1 | MTR_8g046310 | 26.923 | 260 | 151 | 11 | 3 | 246 | 141 | 377 | 9.16e-11 | 61.6 |
MS.gene034681.t1 | MTR_7g013590 | 29.670 | 182 | 115 | 6 | 1 | 176 | 146 | 320 | 9.84e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034681.t1 | AT4G12560 | 34.518 | 197 | 111 | 10 | 1 | 180 | 108 | 303 | 2.54e-16 | 78.2 |
MS.gene034681.t1 | AT4G12560 | 34.518 | 197 | 111 | 10 | 1 | 180 | 108 | 303 | 2.54e-16 | 78.2 |
MS.gene034681.t1 | AT4G12560 | 34.518 | 197 | 111 | 10 | 1 | 180 | 108 | 303 | 2.54e-16 | 78.2 |
MS.gene034681.t1 | AT3G06240 | 27.519 | 258 | 147 | 11 | 3 | 242 | 184 | 419 | 2.40e-15 | 75.1 |
MS.gene034681.t1 | AT3G23880 | 29.050 | 179 | 113 | 6 | 3 | 178 | 132 | 299 | 1.36e-11 | 63.9 |
Find 63 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGAAAATTTGTAGTTTA+TGG | 0.101383 | 1.4:+46455893 | MS.gene034681:CDS |
TGTTGTTGCCTTTGATTTAA+TGG | 0.147144 | 1.4:+46455828 | MS.gene034681:CDS |
TTGGCTATTTGTCCTGTTAC+AGG | 0.219966 | 1.4:+46455796 | MS.gene034681:CDS |
ACGAGGATAAAGTTGATATA+TGG | 0.231752 | 1.4:+46455953 | MS.gene034681:CDS |
ATTTCTCAGTCTATGGGTTT+GGG | 0.250885 | 1.4:+46455927 | MS.gene034681:CDS |
TAAAACTCTTGTTCTTGATT+TGG | 0.263623 | 1.4:+46456011 | MS.gene034681:CDS |
GATTTCTCAGTCTATGGGTT+TGG | 0.272519 | 1.4:+46455926 | MS.gene034681:CDS |
TTAGAGGATTTCTCAGTCTA+TGG | 0.277856 | 1.4:+46455920 | MS.gene034681:CDS |
TTTGAAAATTTGTAGTTTAT+GGG | 0.289443 | 1.4:+46455894 | MS.gene034681:CDS |
TCATACCCAAAGCCATAAAA+AGG | 0.326987 | 1.4:-46455565 | None:intergenic |
GATGACAAAGGAGAGTTTCT+AGG | 0.338641 | 1.4:+46456120 | MS.gene034681:CDS |
TTCAAACGACCAATATCATA+TGG | 0.346728 | 1.4:-46455877 | None:intergenic |
TGAGCAAGATTATCACAAAA+AGG | 0.360361 | 1.4:-46455724 | None:intergenic |
TGTAGTTTATGGGTATTTAG+AGG | 0.364817 | 1.4:+46455904 | MS.gene034681:CDS |
TTAAGCTTGCTCATTGTCAC+TGG | 0.372258 | 1.4:-46456217 | None:intergenic |
TGGTAGAGTCGGTCTTCAAT+GGG | 0.399762 | 1.4:+46455761 | MS.gene034681:CDS |
ATTCCTCTCCCATATGATAT+TGG | 0.400405 | 1.4:+46455868 | MS.gene034681:CDS |
ACAAGATGGTCACCTGTAAC+AGG | 0.408447 | 1.4:-46455808 | None:intergenic |
AAAGGTATACTTGAATGATT+AGG | 0.418298 | 1.4:-46455547 | None:intergenic |
CGAGGATAAAGTTGATATAT+GGG | 0.422656 | 1.4:+46455954 | MS.gene034681:CDS |
TCTTCAATGGGGCTATTCAC+TGG | 0.429378 | 1.4:+46455773 | MS.gene034681:CDS |
GTGGTAGAGTCGGTCTTCAA+TGG | 0.432995 | 1.4:+46455760 | MS.gene034681:CDS |
AATACAAAGTGAAGTCATCT+TGG | 0.433399 | 1.4:+46455986 | MS.gene034681:CDS |
TACAAGGGAAATGTGAGAAA+TGG | 0.461687 | 1.4:-46456037 | None:intergenic |
CGAGTCAACAGATGATTACT+TGG | 0.478220 | 1.4:+46455588 | MS.gene034681:CDS |
CTTTCTTTCCATTAAATCAA+AGG | 0.482406 | 1.4:-46455836 | None:intergenic |
CAATGGGGCTATTCACTGGT+TGG | 0.483990 | 1.4:+46455777 | MS.gene034681:CDS |
TAAGCTTGCTCATTGTCACT+GGG | 0.485254 | 1.4:-46456216 | None:intergenic |
TAGAGGATTTCTCAGTCTAT+GGG | 0.489737 | 1.4:+46455921 | MS.gene034681:CDS |
ATGATGTGCTATCTCACATT+GGG | 0.491270 | 1.4:+46455647 | MS.gene034681:CDS |
TGCTTATACTGTGGTAGAGT+CGG | 0.504361 | 1.4:+46455750 | MS.gene034681:CDS |
ACGAAAAGTGGTGATATTGT+TGG | 0.511464 | 1.4:+46456066 | MS.gene034681:CDS |
ATGACAAAGGAGAGTTTCTA+GGG | 0.519234 | 1.4:+46456121 | MS.gene034681:CDS |
TTTCTCAGTCTATGGGTTTG+GGG | 0.519639 | 1.4:+46455928 | MS.gene034681:CDS |
TCAAACGACCAATATCATAT+GGG | 0.522119 | 1.4:-46455876 | None:intergenic |
AAATACCTTCGCCTCCGTCT+TGG | 0.525982 | 1.4:+46455524 | MS.gene034681:CDS |
TTCTCAGTCTATGGGTTTGG+GGG | 0.526208 | 1.4:+46455929 | MS.gene034681:CDS |
TGCTCACTTTGCTTATACTG+TGG | 0.526532 | 1.4:+46455741 | MS.gene034681:CDS |
CTTGTATGTTGTACGAAAAG+TGG | 0.529124 | 1.4:+46456054 | MS.gene034681:CDS |
TGTCTATGAACTCCGGTGGA+TGG | 0.541552 | 1.4:-46455502 | None:intergenic |
GTCAACAGATGATTACTTGG+TGG | 0.548203 | 1.4:+46455591 | MS.gene034681:CDS |
TAATGTGTGGAACGAAATTG+TGG | 0.563473 | 1.4:+46455687 | MS.gene034681:CDS |
GATGATGTGCTATCTCACAT+TGG | 0.571631 | 1.4:+46455646 | MS.gene034681:CDS |
TCATATCTCACCAACCCACT+AGG | 0.582987 | 1.4:-46456099 | None:intergenic |
TCTCTTTGAGAGCTAATGTG+TGG | 0.587579 | 1.4:+46455674 | MS.gene034681:CDS |
AATCAAAGGCAACAACAAGA+TGG | 0.590227 | 1.4:-46455822 | None:intergenic |
CTTGAATGATTAGGCCAAGA+CGG | 0.590727 | 1.4:-46455538 | None:intergenic |
CGACCAATATCATATGGGAG+AGG | 0.597534 | 1.4:-46455871 | None:intergenic |
TTCACAACATGCATTCCGAC+TGG | 0.604293 | 1.4:+46456164 | MS.gene034681:CDS |
TTAGGCCAAGACGGAGGCGA+AGG | 0.605451 | 1.4:-46455529 | None:intergenic |
TGTTTATGGAATCCATCCAC+CGG | 0.612831 | 1.4:+46455490 | MS.gene034681:CDS |
AACAAATAGACCTAGTGGGT+TGG | 0.613192 | 1.4:+46456089 | MS.gene034681:CDS |
AGGTATTTGTCTATGAACTC+CGG | 0.618231 | 1.4:-46455509 | None:intergenic |
TCTCAGTCTATGGGTTTGGG+GGG | 0.619882 | 1.4:+46455930 | MS.gene034681:CDS |
GTTGGAACAAATAGACCTAG+TGG | 0.630759 | 1.4:+46456084 | MS.gene034681:CDS |
TATTTGTCTATGAACTCCGG+TGG | 0.633571 | 1.4:-46455506 | None:intergenic |
TTGGAACAAATAGACCTAGT+GGG | 0.639900 | 1.4:+46456085 | MS.gene034681:CDS |
TCTCTGTATACATAGCCAGT+CGG | 0.674489 | 1.4:-46456179 | None:intergenic |
AAGCTTGCTCATTGTCACTG+GGG | 0.678198 | 1.4:-46456215 | None:intergenic |
GGTAGAGTCGGTCTTCAATG+GGG | 0.689885 | 1.4:+46455762 | MS.gene034681:CDS |
AATGTGTGGAACGAAATTGT+GGG | 0.717821 | 1.4:+46455688 | MS.gene034681:CDS |
GAATGATTAGGCCAAGACGG+AGG | 0.740832 | 1.4:-46455535 | None:intergenic |
TTGGTGAGATATGATGACAA+AGG | 0.758777 | 1.4:+46456108 | MS.gene034681:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGAAAATTTGTAGTTTAT+GGG | + | chr1.4:46455894-46455913 | MS.gene034681:CDS | 15.0% |
!! | GTTTGAAAATTTGTAGTTTA+TGG | + | chr1.4:46455893-46455912 | MS.gene034681:CDS | 20.0% |
! | CTTTCTTTCCATTAAATCAA+AGG | - | chr1.4:46455839-46455858 | None:intergenic | 25.0% |
! | TAAAACTCTTGTTCTTGATT+TGG | + | chr1.4:46456011-46456030 | MS.gene034681:CDS | 25.0% |
!! | AAAGGTATACTTGAATGATT+AGG | - | chr1.4:46455550-46455569 | None:intergenic | 25.0% |
!! | CATTCAAGTATACCTTTTTA+TGG | + | chr1.4:46455553-46455572 | MS.gene034681:CDS | 25.0% |
AATACAAAGTGAAGTCATCT+TGG | + | chr1.4:46455986-46456005 | MS.gene034681:CDS | 30.0% | |
TCAAACGACCAATATCATAT+GGG | - | chr1.4:46455879-46455898 | None:intergenic | 30.0% | |
TGAGCAAGATTATCACAAAA+AGG | - | chr1.4:46455727-46455746 | None:intergenic | 30.0% | |
TGTAGTTTATGGGTATTTAG+AGG | + | chr1.4:46455904-46455923 | MS.gene034681:CDS | 30.0% | |
TTCAAACGACCAATATCATA+TGG | - | chr1.4:46455880-46455899 | None:intergenic | 30.0% | |
! | ACTTTTCGTACAACATACAA+GGG | - | chr1.4:46456055-46456074 | None:intergenic | 30.0% |
! | AGTATACCTTTTTATGGCTT+TGG | + | chr1.4:46455559-46455578 | MS.gene034681:CDS | 30.0% |
! | GTATACCTTTTTATGGCTTT+GGG | + | chr1.4:46455560-46455579 | MS.gene034681:CDS | 30.0% |
! | TGTTGTTGCCTTTGATTTAA+TGG | + | chr1.4:46455828-46455847 | MS.gene034681:CDS | 30.0% |
!! | ACGAGGATAAAGTTGATATA+TGG | + | chr1.4:46455953-46455972 | MS.gene034681:CDS | 30.0% |
!! | CGAGGATAAAGTTGATATAT+GGG | + | chr1.4:46455954-46455973 | MS.gene034681:CDS | 30.0% |
AATCAAAGGCAACAACAAGA+TGG | - | chr1.4:46455825-46455844 | None:intergenic | 35.0% | |
AATGTGTGGAACGAAATTGT+GGG | + | chr1.4:46455688-46455707 | MS.gene034681:CDS | 35.0% | |
ACGAAAAGTGGTGATATTGT+TGG | + | chr1.4:46456066-46456085 | MS.gene034681:CDS | 35.0% | |
AGGTATTTGTCTATGAACTC+CGG | - | chr1.4:46455512-46455531 | None:intergenic | 35.0% | |
ATGACAAAGGAGAGTTTCTA+GGG | + | chr1.4:46456121-46456140 | MS.gene034681:CDS | 35.0% | |
ATGATGTGCTATCTCACATT+GGG | + | chr1.4:46455647-46455666 | MS.gene034681:CDS | 35.0% | |
ATTCCTCTCCCATATGATAT+TGG | + | chr1.4:46455868-46455887 | MS.gene034681:CDS | 35.0% | |
ATTTCTCAGTCTATGGGTTT+GGG | + | chr1.4:46455927-46455946 | MS.gene034681:CDS | 35.0% | |
CTTGTATGTTGTACGAAAAG+TGG | + | chr1.4:46456054-46456073 | MS.gene034681:CDS | 35.0% | |
TAATGTGTGGAACGAAATTG+TGG | + | chr1.4:46455687-46455706 | MS.gene034681:CDS | 35.0% | |
TACAAGGGAAATGTGAGAAA+TGG | - | chr1.4:46456040-46456059 | None:intergenic | 35.0% | |
TAGAGGATTTCTCAGTCTAT+GGG | + | chr1.4:46455921-46455940 | MS.gene034681:CDS | 35.0% | |
TCACAAAAAGGCAAATGTGT+AGG | - | chr1.4:46455715-46455734 | None:intergenic | 35.0% | |
TCATACCCAAAGCCATAAAA+AGG | - | chr1.4:46455568-46455587 | None:intergenic | 35.0% | |
TTAGAGGATTTCTCAGTCTA+TGG | + | chr1.4:46455920-46455939 | MS.gene034681:CDS | 35.0% | |
TTGGAACAAATAGACCTAGT+GGG | + | chr1.4:46456085-46456104 | MS.gene034681:CDS | 35.0% | |
TTGGTGAGATATGATGACAA+AGG | + | chr1.4:46456108-46456127 | MS.gene034681:CDS | 35.0% | |
! | CACTTTTCGTACAACATACA+AGG | - | chr1.4:46456056-46456075 | None:intergenic | 35.0% |
CGAGTCAACAGATGATTACT+TGG | + | chr1.4:46455588-46455607 | MS.gene034681:CDS | 40.0% | |
CTTGAATGATTAGGCCAAGA+CGG | - | chr1.4:46455541-46455560 | None:intergenic | 40.0% | |
GATGACAAAGGAGAGTTTCT+AGG | + | chr1.4:46456120-46456139 | MS.gene034681:CDS | 40.0% | |
GATGATGTGCTATCTCACAT+TGG | + | chr1.4:46455646-46455665 | MS.gene034681:CDS | 40.0% | |
GATTTCTCAGTCTATGGGTT+TGG | + | chr1.4:46455926-46455945 | MS.gene034681:CDS | 40.0% | |
GTCAACAGATGATTACTTGG+TGG | + | chr1.4:46455591-46455610 | MS.gene034681:CDS | 40.0% | |
GTTGGAACAAATAGACCTAG+TGG | + | chr1.4:46456084-46456103 | MS.gene034681:CDS | 40.0% | |
TATTTGTCTATGAACTCCGG+TGG | - | chr1.4:46455509-46455528 | None:intergenic | 40.0% | |
TCTCTGTATACATAGCCAGT+CGG | - | chr1.4:46456182-46456201 | None:intergenic | 40.0% | |
TGCTCACTTTGCTTATACTG+TGG | + | chr1.4:46455741-46455760 | MS.gene034681:CDS | 40.0% | |
TGCTTATACTGTGGTAGAGT+CGG | + | chr1.4:46455750-46455769 | MS.gene034681:CDS | 40.0% | |
TGTTTATGGAATCCATCCAC+CGG | + | chr1.4:46455490-46455509 | MS.gene034681:CDS | 40.0% | |
TTGGCTATTTGTCCTGTTAC+AGG | + | chr1.4:46455796-46455815 | MS.gene034681:CDS | 40.0% | |
TTTCTCAGTCTATGGGTTTG+GGG | + | chr1.4:46455928-46455947 | MS.gene034681:CDS | 40.0% | |
! | AACAAATAGACCTAGTGGGT+TGG | + | chr1.4:46456089-46456108 | MS.gene034681:CDS | 40.0% |
! | TAAGCTTGCTCATTGTCACT+GGG | - | chr1.4:46456219-46456238 | None:intergenic | 40.0% |
! | TCTCTTTGAGAGCTAATGTG+TGG | + | chr1.4:46455674-46455693 | MS.gene034681:CDS | 40.0% |
! | TTAAGCTTGCTCATTGTCAC+TGG | - | chr1.4:46456220-46456239 | None:intergenic | 40.0% |
ACAAGATGGTCACCTGTAAC+AGG | - | chr1.4:46455811-46455830 | None:intergenic | 45.0% | |
CGACCAATATCATATGGGAG+AGG | - | chr1.4:46455874-46455893 | None:intergenic | 45.0% | |
TCATATCTCACCAACCCACT+AGG | - | chr1.4:46456102-46456121 | None:intergenic | 45.0% | |
TCTTCAATGGGGCTATTCAC+TGG | + | chr1.4:46455773-46455792 | MS.gene034681:CDS | 45.0% | |
TGGTAGAGTCGGTCTTCAAT+GGG | + | chr1.4:46455761-46455780 | MS.gene034681:CDS | 45.0% | |
TTCACAACATGCATTCCGAC+TGG | + | chr1.4:46456164-46456183 | MS.gene034681:CDS | 45.0% | |
TTCTCAGTCTATGGGTTTGG+GGG | + | chr1.4:46455929-46455948 | MS.gene034681:CDS | 45.0% | |
! | AAGCTTGCTCATTGTCACTG+GGG | - | chr1.4:46456218-46456237 | None:intergenic | 45.0% |
AAATACCTTCGCCTCCGTCT+TGG | + | chr1.4:46455524-46455543 | MS.gene034681:CDS | 50.0% | |
CAATGGGGCTATTCACTGGT+TGG | + | chr1.4:46455777-46455796 | MS.gene034681:CDS | 50.0% | |
GAATGATTAGGCCAAGACGG+AGG | - | chr1.4:46455538-46455557 | None:intergenic | 50.0% | |
GGTAGAGTCGGTCTTCAATG+GGG | + | chr1.4:46455762-46455781 | MS.gene034681:CDS | 50.0% | |
GTGGTAGAGTCGGTCTTCAA+TGG | + | chr1.4:46455760-46455779 | MS.gene034681:CDS | 50.0% | |
TCTCAGTCTATGGGTTTGGG+GGG | + | chr1.4:46455930-46455949 | MS.gene034681:CDS | 50.0% | |
TGTCTATGAACTCCGGTGGA+TGG | - | chr1.4:46455505-46455524 | None:intergenic | 50.0% | |
TCTATGGGTTTGGGGGGACG+AGG | + | chr1.4:46455936-46455955 | MS.gene034681:CDS | 60.0% | |
TTAGGCCAAGACGGAGGCGA+AGG | - | chr1.4:46455532-46455551 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 46455487 | 46456239 | 46455487 | ID=MS.gene034681 |
chr1.4 | mRNA | 46455487 | 46456239 | 46455487 | ID=MS.gene034681.t1;Parent=MS.gene034681 |
chr1.4 | exon | 46455487 | 46456239 | 46455487 | ID=MS.gene034681.t1.exon1;Parent=MS.gene034681.t1 |
chr1.4 | CDS | 46455487 | 46456239 | 46455487 | ID=cds.MS.gene034681.t1;Parent=MS.gene034681.t1 |
Gene Sequence |
Protein sequence |