AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034681


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034681.t1 MTR_1g055135 69.291 254 69 3 3 250 125 375 3.82e-114 332
MS.gene034681.t1 MTR_1g055175 70.103 194 56 2 59 250 8 201 5.99e-92 270
MS.gene034681.t1 MTR_1g055195 57.255 255 87 6 3 250 239 478 6.55e-87 266
MS.gene034681.t1 MTR_4g118370 56.504 246 84 5 3 247 34 257 7.88e-85 253
MS.gene034681.t1 MTR_5g097210 58.704 247 94 6 3 247 120 360 2.59e-83 253
MS.gene034681.t1 MTR_4g117750 54.902 255 102 5 3 249 109 358 3.51e-78 244
MS.gene034681.t1 MTR_4g117750 50.909 110 50 3 142 248 373 481 5.57e-24 100
MS.gene034681.t1 MTR_1g055165 53.600 250 60 4 3 250 123 318 2.40e-76 234
MS.gene034681.t1 MTR_1g055250 62.319 207 73 4 26 230 46 249 6.75e-74 228
MS.gene034681.t1 MTR_4g117720 53.462 260 102 10 3 250 126 378 3.08e-73 228
MS.gene034681.t1 MTR_6g060650 50.775 258 103 10 3 249 128 372 1.46e-67 213
MS.gene034681.t1 MTR_3g103020 50.973 257 108 8 3 250 131 378 6.89e-67 212
MS.gene034681.t1 MTR_4g117850 50.000 248 111 7 3 243 132 373 1.15e-65 208
MS.gene034681.t1 MTR_5g070088 48.594 249 119 5 1 244 135 379 1.02e-64 206
MS.gene034681.t1 MTR_5g070080 49.412 255 114 10 3 250 140 386 7.37e-64 204
MS.gene034681.t1 MTR_5g070130 45.627 263 124 9 1 250 121 377 4.39e-63 202
MS.gene034681.t1 MTR_4g117770 48.438 256 113 8 3 249 121 366 1.01e-62 201
MS.gene034681.t1 MTR_4g117810 48.438 256 113 8 3 249 121 366 1.01e-62 201
MS.gene034681.t1 MTR_4g023130 48.235 255 103 8 3 249 79 312 3.11e-62 197
MS.gene034681.t1 MTR_4g109280 52.174 253 108 10 3 250 115 359 7.38e-62 198
MS.gene034681.t1 MTR_4g109270 48.819 254 113 9 3 250 122 364 2.75e-61 197
MS.gene034681.t1 MTR_4g023080 47.451 255 105 8 3 249 120 353 5.06e-60 193
MS.gene034681.t1 MTR_3g034180 46.718 259 120 10 3 249 236 488 8.13e-59 194
MS.gene034681.t1 MTR_4g117780 46.484 256 118 8 3 249 121 366 1.54e-58 190
MS.gene034681.t1 MTR_4g122850 45.283 265 118 10 1 250 112 364 2.87e-58 189
MS.gene034681.t1 MTR_4g116330 45.276 254 123 9 3 250 137 380 7.35e-58 188
MS.gene034681.t1 MTR_4g118380 48.729 236 95 9 3 221 130 356 2.95e-57 186
MS.gene034681.t1 MTR_3g034130 47.967 246 111 9 3 236 122 362 3.74e-57 186
MS.gene034681.t1 MTR_4g094365 46.094 256 120 8 3 250 119 364 1.35e-56 185
MS.gene034681.t1 MTR_3g034160 46.538 260 119 8 3 249 122 374 2.30e-53 177
MS.gene034681.t1 MTR_4g021785 43.023 258 115 8 3 250 120 355 7.82e-53 175
MS.gene034681.t1 MTR_4g116320 47.465 217 107 5 34 247 43 255 2.83e-52 170
MS.gene034681.t1 MTR_4g023150 43.307 254 120 9 3 248 121 358 5.97e-52 172
MS.gene034681.t1 MTR_4g023090 41.455 275 116 10 3 249 128 385 7.27e-52 173
MS.gene034681.t1 MTR_4g023190 43.922 255 116 11 3 248 121 357 7.78e-52 172
MS.gene034681.t1 MTR_4g023070 43.609 266 121 9 3 249 114 369 1.61e-51 172
MS.gene034681.t1 MTR_8g032390 47.287 258 108 14 1 244 126 369 9.05e-51 170
MS.gene034681.t1 MTR_8g433040 44.015 259 113 10 3 250 127 364 1.05e-50 169
MS.gene034681.t1 MTR_8g032380 44.015 259 113 10 3 250 127 364 1.05e-50 169
MS.gene034681.t1 MTR_4g118400 45.528 246 95 13 3 244 84 294 1.38e-50 167
MS.gene034681.t1 MTR_4g117870 40.000 250 107 7 3 250 59 267 8.46e-50 164
MS.gene034681.t1 MTR_4g023200 42.520 254 122 9 3 248 121 358 1.44e-49 166
MS.gene034681.t1 MTR_4g023120 41.241 274 118 10 3 250 114 370 2.54e-49 166
MS.gene034681.t1 MTR_7g079400 41.961 255 138 5 3 250 86 337 2.60e-49 165
MS.gene034681.t1 MTR_4g023380 39.085 284 105 10 3 250 128 379 6.65e-49 165
MS.gene034681.t1 MTR_8g433030 50.000 234 92 13 22 244 117 336 1.76e-48 163
MS.gene034681.t1 MTR_8g102520 40.157 254 140 5 3 250 75 322 1.99e-47 160
MS.gene034681.t1 MTR_7g079370 41.176 255 137 5 3 245 98 351 2.04e-45 155
MS.gene034681.t1 MTR_8g040935 46.829 205 97 7 54 250 8 208 3.70e-44 148
MS.gene034681.t1 MTR_6g463430 45.631 206 98 9 50 250 6 202 2.51e-41 140
MS.gene034681.t1 MTR_4g116330 39.442 251 103 9 3 250 137 341 1.66e-40 142
MS.gene034681.t1 MTR_4g117530 41.333 225 86 7 28 250 73 253 3.11e-39 137
MS.gene034681.t1 MTR_4g023440 37.402 254 99 7 3 249 131 331 5.11e-39 138
MS.gene034681.t1 MTR_4g118360 56.140 114 48 2 138 250 14 126 3.57e-36 125
MS.gene034681.t1 MTR_4g121580 38.039 255 118 12 1 246 126 349 1.51e-32 122
MS.gene034681.t1 MTR_7g079420 35.849 265 114 10 3 250 919 1144 2.16e-31 122
MS.gene034681.t1 MTR_2g048580 34.524 252 133 9 3 250 119 342 1.90e-30 116
MS.gene034681.t1 MTR_4g114700 36.323 223 84 9 3 218 22 193 9.79e-30 112
MS.gene034681.t1 MTR_5g023000 61.053 95 34 2 158 250 6 99 1.16e-29 107
MS.gene034681.t1 MTR_4g117430 44.079 152 71 4 1 151 14 152 3.72e-28 105
MS.gene034681.t1 MTR_8g013010 47.436 156 62 7 3 151 167 309 6.62e-27 106
MS.gene034681.t1 MTR_7g079450 41.606 137 78 2 114 250 3 137 1.06e-25 98.6
MS.gene034681.t1 MTR_1g055145 62.195 82 31 0 86 167 121 202 1.44e-23 96.7
MS.gene034681.t1 MTR_4g122860 35.751 193 88 8 64 249 156 319 2.92e-23 96.7
MS.gene034681.t1 MTR_8g098830 37.349 166 97 4 62 224 37 198 7.62e-23 93.6
MS.gene034681.t1 MTR_1g055200 65.152 66 21 1 3 68 22 85 5.99e-21 85.1
MS.gene034681.t1 MTR_4g133170 28.571 217 130 6 1 200 105 313 1.35e-18 84.3
MS.gene034681.t1 MTR_2g026010 30.769 195 118 5 1 180 105 297 1.80e-18 84.0
MS.gene034681.t1 MTR_2g025420 30.500 200 108 7 3 180 132 322 2.98e-18 83.6
MS.gene034681.t1 MTR_4g070550 31.122 196 106 7 1 176 125 311 1.31e-17 81.6
MS.gene034681.t1 MTR_1g068835 30.041 243 128 12 1 216 105 332 2.13e-17 80.9
MS.gene034681.t1 MTR_7g117720 34.161 161 91 5 90 245 122 272 2.57e-17 79.3
MS.gene034681.t1 MTR_7g117720 47.619 84 39 3 1 81 103 184 2.28e-14 71.2
MS.gene034681.t1 MTR_6g034720 42.276 123 61 3 13 130 53 170 1.02e-16 76.6
MS.gene034681.t1 MTR_0667s0010 30.612 196 113 7 1 180 118 306 1.14e-16 79.0
MS.gene034681.t1 MTR_3g083010 28.426 197 119 5 1 181 132 322 2.58e-16 77.8
MS.gene034681.t1 MTR_2g021050 30.994 171 101 4 20 180 122 285 3.52e-16 77.4
MS.gene034681.t1 MTR_2g028140 28.452 239 135 9 1 217 131 355 6.60e-16 76.6
MS.gene034681.t1 MTR_8g099460 31.579 190 111 7 3 180 119 301 9.83e-16 76.3
MS.gene034681.t1 MTR_2g426060 29.798 198 109 7 3 180 125 312 2.20e-15 75.1
MS.gene034681.t1 MTR_2g028160 30.570 193 116 6 1 180 130 317 5.93e-15 73.9
MS.gene034681.t1 MTR_2g028130 28.085 235 143 9 1 217 130 356 6.75e-15 73.9
MS.gene034681.t1 MTR_2g024100 28.205 195 113 5 1 176 120 306 1.32e-14 72.8
MS.gene034681.t1 MTR_5g057790 29.730 185 105 8 3 180 164 330 3.62e-14 71.6
MS.gene034681.t1 MTR_4g116340 42.478 113 45 5 3 105 132 234 4.06e-14 70.1
MS.gene034681.t1 MTR_3g009310 31.892 185 101 8 3 180 160 326 5.45e-14 71.2
MS.gene034681.t1 MTR_5g097680 29.245 212 113 8 2 180 158 365 6.55e-14 70.9
MS.gene034681.t1 MTR_8g013005 52.459 61 26 2 191 250 1 59 2.02e-13 63.5
MS.gene034681.t1 MTR_5g046280 30.337 178 107 7 1 176 20 182 2.17e-13 68.2
MS.gene034681.t1 MTR_4g023430 46.341 82 40 2 173 250 141 222 2.91e-13 67.4
MS.gene034681.t1 MTR_2g426070 30.052 193 114 7 1 180 129 313 3.06e-13 68.9
MS.gene034681.t1 MTR_5g046300 30.337 178 107 7 1 176 117 279 4.39e-13 68.2
MS.gene034681.t1 MTR_5g046290 30.337 178 107 7 1 176 117 279 4.39e-13 68.2
MS.gene034681.t1 MTR_2g031680 28.814 236 141 7 1 216 105 333 7.00e-13 67.8
MS.gene034681.t1 MTR_7g070440 28.641 206 114 9 1 186 119 311 7.12e-13 67.8
MS.gene034681.t1 MTR_3g007360 29.717 212 107 11 3 196 167 354 7.64e-13 67.8
MS.gene034681.t1 MTR_3g006670 29.353 201 110 10 3 192 164 343 7.91e-13 67.8
MS.gene034681.t1 MTR_3g007410 29.327 208 113 10 3 196 167 354 8.88e-13 67.8
MS.gene034681.t1 MTR_2g021770 28.102 274 161 12 3 247 141 407 9.82e-13 67.4
MS.gene034681.t1 MTR_2g104340 27.018 285 155 13 1 247 127 396 1.35e-12 67.0
MS.gene034681.t1 MTR_2g104280 26.117 291 153 13 1 248 135 406 1.59e-12 67.0
MS.gene034681.t1 MTR_3g014540 30.526 190 102 10 4 180 143 315 1.78e-12 66.6
MS.gene034681.t1 MTR_5g007610 33.168 202 106 11 3 189 153 340 3.01e-12 65.9
MS.gene034681.t1 MTR_2g031640 28.061 196 119 6 1 180 106 295 5.25e-12 65.1
MS.gene034681.t1 MTR_2g031720 28.571 196 118 6 1 180 110 299 6.62e-12 65.1
MS.gene034681.t1 MTR_2g425980 29.293 198 115 6 1 180 122 312 6.70e-12 65.1
MS.gene034681.t1 MTR_4g014370 25.373 268 167 13 1 243 146 405 7.28e-12 65.1
MS.gene034681.t1 MTR_6g021880 32.787 183 106 9 1 176 140 312 7.58e-12 64.7
MS.gene034681.t1 MTR_5g011200 29.231 195 118 8 3 191 134 314 8.73e-12 64.7
MS.gene034681.t1 MTR_2g024110 25.628 199 118 7 1 181 108 294 1.40e-11 63.9
MS.gene034681.t1 MTR_3g023930 30.286 175 95 8 3 176 146 294 1.50e-11 63.9
MS.gene034681.t1 MTR_5g069120 51.316 76 27 3 3 68 102 177 1.60e-11 61.6
MS.gene034681.t1 MTR_1g068860 30.457 197 112 10 1 180 105 293 2.16e-11 63.5
MS.gene034681.t1 MTR_2g426090 26.804 194 121 7 1 180 124 310 2.26e-11 63.5
MS.gene034681.t1 MTR_3g011020 31.288 163 87 9 29 180 157 305 2.37e-11 63.2
MS.gene034681.t1 MTR_2g038680 24.275 276 164 10 3 243 142 407 2.82e-11 63.2
MS.gene034681.t1 MTR_2g021155 30.601 183 107 9 3 176 711 882 3.34e-11 63.5
MS.gene034681.t1 MTR_7g070880 24.460 278 168 11 3 243 149 421 3.44e-11 62.8
MS.gene034681.t1 MTR_3g013770 31.053 190 101 10 3 180 152 323 3.64e-11 62.8
MS.gene034681.t1 MTR_3g014570 28.342 187 110 7 4 180 143 315 4.94e-11 62.4
MS.gene034681.t1 MTR_3g009300 29.381 194 106 9 3 188 121 291 4.95e-11 62.4
MS.gene034681.t1 MTR_3g007430 30.319 188 106 10 3 180 156 328 5.94e-11 62.0
MS.gene034681.t1 MTR_7g407070 29.534 193 104 8 3 176 154 333 5.97e-11 62.0
MS.gene034681.t1 MTR_2g021190 31.868 182 104 8 3 176 135 304 6.03e-11 62.0
MS.gene034681.t1 MTR_4g134560 24.352 193 123 7 3 189 196 371 6.54e-11 62.0
MS.gene034681.t1 MTR_8g046310 26.923 260 151 11 3 246 141 377 9.16e-11 61.6
MS.gene034681.t1 MTR_7g013590 29.670 182 115 6 1 176 146 320 9.84e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034681.t1 AT4G12560 34.518 197 111 10 1 180 108 303 2.54e-16 78.2
MS.gene034681.t1 AT4G12560 34.518 197 111 10 1 180 108 303 2.54e-16 78.2
MS.gene034681.t1 AT4G12560 34.518 197 111 10 1 180 108 303 2.54e-16 78.2
MS.gene034681.t1 AT3G06240 27.519 258 147 11 3 242 184 419 2.40e-15 75.1
MS.gene034681.t1 AT3G23880 29.050 179 113 6 3 178 132 299 1.36e-11 63.9

Find 63 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGAAAATTTGTAGTTTA+TGG 0.101383 1.4:+46455893 MS.gene034681:CDS
TGTTGTTGCCTTTGATTTAA+TGG 0.147144 1.4:+46455828 MS.gene034681:CDS
TTGGCTATTTGTCCTGTTAC+AGG 0.219966 1.4:+46455796 MS.gene034681:CDS
ACGAGGATAAAGTTGATATA+TGG 0.231752 1.4:+46455953 MS.gene034681:CDS
ATTTCTCAGTCTATGGGTTT+GGG 0.250885 1.4:+46455927 MS.gene034681:CDS
TAAAACTCTTGTTCTTGATT+TGG 0.263623 1.4:+46456011 MS.gene034681:CDS
GATTTCTCAGTCTATGGGTT+TGG 0.272519 1.4:+46455926 MS.gene034681:CDS
TTAGAGGATTTCTCAGTCTA+TGG 0.277856 1.4:+46455920 MS.gene034681:CDS
TTTGAAAATTTGTAGTTTAT+GGG 0.289443 1.4:+46455894 MS.gene034681:CDS
TCATACCCAAAGCCATAAAA+AGG 0.326987 1.4:-46455565 None:intergenic
GATGACAAAGGAGAGTTTCT+AGG 0.338641 1.4:+46456120 MS.gene034681:CDS
TTCAAACGACCAATATCATA+TGG 0.346728 1.4:-46455877 None:intergenic
TGAGCAAGATTATCACAAAA+AGG 0.360361 1.4:-46455724 None:intergenic
TGTAGTTTATGGGTATTTAG+AGG 0.364817 1.4:+46455904 MS.gene034681:CDS
TTAAGCTTGCTCATTGTCAC+TGG 0.372258 1.4:-46456217 None:intergenic
TGGTAGAGTCGGTCTTCAAT+GGG 0.399762 1.4:+46455761 MS.gene034681:CDS
ATTCCTCTCCCATATGATAT+TGG 0.400405 1.4:+46455868 MS.gene034681:CDS
ACAAGATGGTCACCTGTAAC+AGG 0.408447 1.4:-46455808 None:intergenic
AAAGGTATACTTGAATGATT+AGG 0.418298 1.4:-46455547 None:intergenic
CGAGGATAAAGTTGATATAT+GGG 0.422656 1.4:+46455954 MS.gene034681:CDS
TCTTCAATGGGGCTATTCAC+TGG 0.429378 1.4:+46455773 MS.gene034681:CDS
GTGGTAGAGTCGGTCTTCAA+TGG 0.432995 1.4:+46455760 MS.gene034681:CDS
AATACAAAGTGAAGTCATCT+TGG 0.433399 1.4:+46455986 MS.gene034681:CDS
TACAAGGGAAATGTGAGAAA+TGG 0.461687 1.4:-46456037 None:intergenic
CGAGTCAACAGATGATTACT+TGG 0.478220 1.4:+46455588 MS.gene034681:CDS
CTTTCTTTCCATTAAATCAA+AGG 0.482406 1.4:-46455836 None:intergenic
CAATGGGGCTATTCACTGGT+TGG 0.483990 1.4:+46455777 MS.gene034681:CDS
TAAGCTTGCTCATTGTCACT+GGG 0.485254 1.4:-46456216 None:intergenic
TAGAGGATTTCTCAGTCTAT+GGG 0.489737 1.4:+46455921 MS.gene034681:CDS
ATGATGTGCTATCTCACATT+GGG 0.491270 1.4:+46455647 MS.gene034681:CDS
TGCTTATACTGTGGTAGAGT+CGG 0.504361 1.4:+46455750 MS.gene034681:CDS
ACGAAAAGTGGTGATATTGT+TGG 0.511464 1.4:+46456066 MS.gene034681:CDS
ATGACAAAGGAGAGTTTCTA+GGG 0.519234 1.4:+46456121 MS.gene034681:CDS
TTTCTCAGTCTATGGGTTTG+GGG 0.519639 1.4:+46455928 MS.gene034681:CDS
TCAAACGACCAATATCATAT+GGG 0.522119 1.4:-46455876 None:intergenic
AAATACCTTCGCCTCCGTCT+TGG 0.525982 1.4:+46455524 MS.gene034681:CDS
TTCTCAGTCTATGGGTTTGG+GGG 0.526208 1.4:+46455929 MS.gene034681:CDS
TGCTCACTTTGCTTATACTG+TGG 0.526532 1.4:+46455741 MS.gene034681:CDS
CTTGTATGTTGTACGAAAAG+TGG 0.529124 1.4:+46456054 MS.gene034681:CDS
TGTCTATGAACTCCGGTGGA+TGG 0.541552 1.4:-46455502 None:intergenic
GTCAACAGATGATTACTTGG+TGG 0.548203 1.4:+46455591 MS.gene034681:CDS
TAATGTGTGGAACGAAATTG+TGG 0.563473 1.4:+46455687 MS.gene034681:CDS
GATGATGTGCTATCTCACAT+TGG 0.571631 1.4:+46455646 MS.gene034681:CDS
TCATATCTCACCAACCCACT+AGG 0.582987 1.4:-46456099 None:intergenic
TCTCTTTGAGAGCTAATGTG+TGG 0.587579 1.4:+46455674 MS.gene034681:CDS
AATCAAAGGCAACAACAAGA+TGG 0.590227 1.4:-46455822 None:intergenic
CTTGAATGATTAGGCCAAGA+CGG 0.590727 1.4:-46455538 None:intergenic
CGACCAATATCATATGGGAG+AGG 0.597534 1.4:-46455871 None:intergenic
TTCACAACATGCATTCCGAC+TGG 0.604293 1.4:+46456164 MS.gene034681:CDS
TTAGGCCAAGACGGAGGCGA+AGG 0.605451 1.4:-46455529 None:intergenic
TGTTTATGGAATCCATCCAC+CGG 0.612831 1.4:+46455490 MS.gene034681:CDS
AACAAATAGACCTAGTGGGT+TGG 0.613192 1.4:+46456089 MS.gene034681:CDS
AGGTATTTGTCTATGAACTC+CGG 0.618231 1.4:-46455509 None:intergenic
TCTCAGTCTATGGGTTTGGG+GGG 0.619882 1.4:+46455930 MS.gene034681:CDS
GTTGGAACAAATAGACCTAG+TGG 0.630759 1.4:+46456084 MS.gene034681:CDS
TATTTGTCTATGAACTCCGG+TGG 0.633571 1.4:-46455506 None:intergenic
TTGGAACAAATAGACCTAGT+GGG 0.639900 1.4:+46456085 MS.gene034681:CDS
TCTCTGTATACATAGCCAGT+CGG 0.674489 1.4:-46456179 None:intergenic
AAGCTTGCTCATTGTCACTG+GGG 0.678198 1.4:-46456215 None:intergenic
GGTAGAGTCGGTCTTCAATG+GGG 0.689885 1.4:+46455762 MS.gene034681:CDS
AATGTGTGGAACGAAATTGT+GGG 0.717821 1.4:+46455688 MS.gene034681:CDS
GAATGATTAGGCCAAGACGG+AGG 0.740832 1.4:-46455535 None:intergenic
TTGGTGAGATATGATGACAA+AGG 0.758777 1.4:+46456108 MS.gene034681:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAAAATTTGTAGTTTAT+GGG + chr1.4:46455894-46455913 MS.gene034681:CDS 15.0%
!! GTTTGAAAATTTGTAGTTTA+TGG + chr1.4:46455893-46455912 MS.gene034681:CDS 20.0%
! CTTTCTTTCCATTAAATCAA+AGG - chr1.4:46455839-46455858 None:intergenic 25.0%
! TAAAACTCTTGTTCTTGATT+TGG + chr1.4:46456011-46456030 MS.gene034681:CDS 25.0%
!! AAAGGTATACTTGAATGATT+AGG - chr1.4:46455550-46455569 None:intergenic 25.0%
!! CATTCAAGTATACCTTTTTA+TGG + chr1.4:46455553-46455572 MS.gene034681:CDS 25.0%
AATACAAAGTGAAGTCATCT+TGG + chr1.4:46455986-46456005 MS.gene034681:CDS 30.0%
TCAAACGACCAATATCATAT+GGG - chr1.4:46455879-46455898 None:intergenic 30.0%
TGAGCAAGATTATCACAAAA+AGG - chr1.4:46455727-46455746 None:intergenic 30.0%
TGTAGTTTATGGGTATTTAG+AGG + chr1.4:46455904-46455923 MS.gene034681:CDS 30.0%
TTCAAACGACCAATATCATA+TGG - chr1.4:46455880-46455899 None:intergenic 30.0%
! ACTTTTCGTACAACATACAA+GGG - chr1.4:46456055-46456074 None:intergenic 30.0%
! AGTATACCTTTTTATGGCTT+TGG + chr1.4:46455559-46455578 MS.gene034681:CDS 30.0%
! GTATACCTTTTTATGGCTTT+GGG + chr1.4:46455560-46455579 MS.gene034681:CDS 30.0%
! TGTTGTTGCCTTTGATTTAA+TGG + chr1.4:46455828-46455847 MS.gene034681:CDS 30.0%
!! ACGAGGATAAAGTTGATATA+TGG + chr1.4:46455953-46455972 MS.gene034681:CDS 30.0%
!! CGAGGATAAAGTTGATATAT+GGG + chr1.4:46455954-46455973 MS.gene034681:CDS 30.0%
AATCAAAGGCAACAACAAGA+TGG - chr1.4:46455825-46455844 None:intergenic 35.0%
AATGTGTGGAACGAAATTGT+GGG + chr1.4:46455688-46455707 MS.gene034681:CDS 35.0%
ACGAAAAGTGGTGATATTGT+TGG + chr1.4:46456066-46456085 MS.gene034681:CDS 35.0%
AGGTATTTGTCTATGAACTC+CGG - chr1.4:46455512-46455531 None:intergenic 35.0%
ATGACAAAGGAGAGTTTCTA+GGG + chr1.4:46456121-46456140 MS.gene034681:CDS 35.0%
ATGATGTGCTATCTCACATT+GGG + chr1.4:46455647-46455666 MS.gene034681:CDS 35.0%
ATTCCTCTCCCATATGATAT+TGG + chr1.4:46455868-46455887 MS.gene034681:CDS 35.0%
ATTTCTCAGTCTATGGGTTT+GGG + chr1.4:46455927-46455946 MS.gene034681:CDS 35.0%
CTTGTATGTTGTACGAAAAG+TGG + chr1.4:46456054-46456073 MS.gene034681:CDS 35.0%
TAATGTGTGGAACGAAATTG+TGG + chr1.4:46455687-46455706 MS.gene034681:CDS 35.0%
TACAAGGGAAATGTGAGAAA+TGG - chr1.4:46456040-46456059 None:intergenic 35.0%
TAGAGGATTTCTCAGTCTAT+GGG + chr1.4:46455921-46455940 MS.gene034681:CDS 35.0%
TCACAAAAAGGCAAATGTGT+AGG - chr1.4:46455715-46455734 None:intergenic 35.0%
TCATACCCAAAGCCATAAAA+AGG - chr1.4:46455568-46455587 None:intergenic 35.0%
TTAGAGGATTTCTCAGTCTA+TGG + chr1.4:46455920-46455939 MS.gene034681:CDS 35.0%
TTGGAACAAATAGACCTAGT+GGG + chr1.4:46456085-46456104 MS.gene034681:CDS 35.0%
TTGGTGAGATATGATGACAA+AGG + chr1.4:46456108-46456127 MS.gene034681:CDS 35.0%
! CACTTTTCGTACAACATACA+AGG - chr1.4:46456056-46456075 None:intergenic 35.0%
CGAGTCAACAGATGATTACT+TGG + chr1.4:46455588-46455607 MS.gene034681:CDS 40.0%
CTTGAATGATTAGGCCAAGA+CGG - chr1.4:46455541-46455560 None:intergenic 40.0%
GATGACAAAGGAGAGTTTCT+AGG + chr1.4:46456120-46456139 MS.gene034681:CDS 40.0%
GATGATGTGCTATCTCACAT+TGG + chr1.4:46455646-46455665 MS.gene034681:CDS 40.0%
GATTTCTCAGTCTATGGGTT+TGG + chr1.4:46455926-46455945 MS.gene034681:CDS 40.0%
GTCAACAGATGATTACTTGG+TGG + chr1.4:46455591-46455610 MS.gene034681:CDS 40.0%
GTTGGAACAAATAGACCTAG+TGG + chr1.4:46456084-46456103 MS.gene034681:CDS 40.0%
TATTTGTCTATGAACTCCGG+TGG - chr1.4:46455509-46455528 None:intergenic 40.0%
TCTCTGTATACATAGCCAGT+CGG - chr1.4:46456182-46456201 None:intergenic 40.0%
TGCTCACTTTGCTTATACTG+TGG + chr1.4:46455741-46455760 MS.gene034681:CDS 40.0%
TGCTTATACTGTGGTAGAGT+CGG + chr1.4:46455750-46455769 MS.gene034681:CDS 40.0%
TGTTTATGGAATCCATCCAC+CGG + chr1.4:46455490-46455509 MS.gene034681:CDS 40.0%
TTGGCTATTTGTCCTGTTAC+AGG + chr1.4:46455796-46455815 MS.gene034681:CDS 40.0%
TTTCTCAGTCTATGGGTTTG+GGG + chr1.4:46455928-46455947 MS.gene034681:CDS 40.0%
! AACAAATAGACCTAGTGGGT+TGG + chr1.4:46456089-46456108 MS.gene034681:CDS 40.0%
! TAAGCTTGCTCATTGTCACT+GGG - chr1.4:46456219-46456238 None:intergenic 40.0%
! TCTCTTTGAGAGCTAATGTG+TGG + chr1.4:46455674-46455693 MS.gene034681:CDS 40.0%
! TTAAGCTTGCTCATTGTCAC+TGG - chr1.4:46456220-46456239 None:intergenic 40.0%
ACAAGATGGTCACCTGTAAC+AGG - chr1.4:46455811-46455830 None:intergenic 45.0%
CGACCAATATCATATGGGAG+AGG - chr1.4:46455874-46455893 None:intergenic 45.0%
TCATATCTCACCAACCCACT+AGG - chr1.4:46456102-46456121 None:intergenic 45.0%
TCTTCAATGGGGCTATTCAC+TGG + chr1.4:46455773-46455792 MS.gene034681:CDS 45.0%
TGGTAGAGTCGGTCTTCAAT+GGG + chr1.4:46455761-46455780 MS.gene034681:CDS 45.0%
TTCACAACATGCATTCCGAC+TGG + chr1.4:46456164-46456183 MS.gene034681:CDS 45.0%
TTCTCAGTCTATGGGTTTGG+GGG + chr1.4:46455929-46455948 MS.gene034681:CDS 45.0%
! AAGCTTGCTCATTGTCACTG+GGG - chr1.4:46456218-46456237 None:intergenic 45.0%
AAATACCTTCGCCTCCGTCT+TGG + chr1.4:46455524-46455543 MS.gene034681:CDS 50.0%
CAATGGGGCTATTCACTGGT+TGG + chr1.4:46455777-46455796 MS.gene034681:CDS 50.0%
GAATGATTAGGCCAAGACGG+AGG - chr1.4:46455538-46455557 None:intergenic 50.0%
GGTAGAGTCGGTCTTCAATG+GGG + chr1.4:46455762-46455781 MS.gene034681:CDS 50.0%
GTGGTAGAGTCGGTCTTCAA+TGG + chr1.4:46455760-46455779 MS.gene034681:CDS 50.0%
TCTCAGTCTATGGGTTTGGG+GGG + chr1.4:46455930-46455949 MS.gene034681:CDS 50.0%
TGTCTATGAACTCCGGTGGA+TGG - chr1.4:46455505-46455524 None:intergenic 50.0%
TCTATGGGTTTGGGGGGACG+AGG + chr1.4:46455936-46455955 MS.gene034681:CDS 60.0%
TTAGGCCAAGACGGAGGCGA+AGG - chr1.4:46455532-46455551 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 46455487 46456239 46455487 ID=MS.gene034681
chr1.4 mRNA 46455487 46456239 46455487 ID=MS.gene034681.t1;Parent=MS.gene034681
chr1.4 exon 46455487 46456239 46455487 ID=MS.gene034681.t1.exon1;Parent=MS.gene034681.t1
chr1.4 CDS 46455487 46456239 46455487 ID=cds.MS.gene034681.t1;Parent=MS.gene034681.t1
Gene Sequence

>MS.gene034681

ATGTGTTTATGGAATCCATCCACCGGAGTTCATAGACAAATACCTTCGCCTCCGTCTTGGCCTAATCATTCAAGTATACCTTTTTATGGCTTTGGGTATGACGAGTCAACAGATGATTACTTGGTGGTTTTAGTATTCTATCATTTTATTCAAAACTCAGATGATGTGCTATCTCACATTGGGATTTTCTCTTTGAGAGCTAATGTGTGGAACGAAATTGTGGGTCCTACACATTTGCCTTTTTGTGATAATCTTGCTCACTTTGCTTATACTGTGGTAGAGTCGGTCTTCAATGGGGCTATTCACTGGTTGGCTATTTGTCCTGTTACAGGTGACCATCTTGTTGTTGCCTTTGATTTAATGGAAAGAAAGCTTGTAGAGATTCCTCTCCCATATGATATTGGTCGTTTGAAAATTTGTAGTTTATGGGTATTTAGAGGATTTCTCAGTCTATGGGTTTGGGGGGACGAGGATAAAGTTGATATATGGGTGATGAAAGAATACAAAGTGAAGTCATCTTGGACTAAAACTCTTGTTCTTGATTTGGATACCATTTCTCACATTTCCCTTGTATGTTGTACGAAAAGTGGTGATATTGTTGGAACAAATAGACCTAGTGGGTTGGTGAGATATGATGACAAAGGAGAGTTTCTAGGGCATAACTATTATAGTGAATCTTCACAACATGCATTCCGACTGGCTATGTATACAGAGACTCTGCTTTCACTCCCCAGTGACAATGAGCAAGCTTAA

Protein sequence

>MS.gene034681.t1

MCLWNPSTGVHRQIPSPPSWPNHSSIPFYGFGYDESTDDYLVVLVFYHFIQNSDDVLSHIGIFSLRANVWNEIVGPTHLPFCDNLAHFAYTVVESVFNGAIHWLAICPVTGDHLVVAFDLMERKLVEIPLPYDIGRLKICSLWVFRGFLSLWVWGDEDKVDIWVMKEYKVKSSWTKTLVLDLDTISHISLVCCTKSGDIVGTNRPSGLVRYDDKGEFLGHNYYSESSQHAFRLAMYTETLLSLPSDNEQA