AlfalfaGEDB | MS.gene028390

M. sativa cultivar XinJiangDaYe / MS.gene028390

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028390.t1	XP_013457251.1	79.1	134	26	1	1	132	231	364	2.60E-53	218

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028390.t1	A0A072UNK5	79.1	134	26	1	1	132	231	364	1.9e-53	218.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene041474	MS.gene028390	PPI
MS.gene27020	MS.gene028390	PPI
MS.gene028390	MS.gene57532	PPI
MS.gene028390	MS.gene033442	PPI
MS.gene041388	MS.gene028390	PPI
MS.gene062698	MS.gene028390	PPI
MS.gene57536	MS.gene028390	PPI
MS.gene96126	MS.gene028390	PPI
MS.gene51208	MS.gene028390	PPI
MS.gene016524	MS.gene028390	PPI
MS.gene50304	MS.gene028390	PPI
MS.gene028390	MS.gene44428	PPI
MS.gene028390	MS.gene058669	PPI
MS.gene028390	MS.gene066120	PPI
MS.gene045475	MS.gene028390	PPI
MS.gene88776	MS.gene028390	PPI
MS.gene028390	MS.gene035235	PPI
MS.gene59943	MS.gene028390	PPI
MS.gene90744	MS.gene028390	PPI
MS.gene51204	MS.gene028390	PPI
MS.gene028390	MS.gene041489	PPI
MS.gene036557	MS.gene028390	PPI
MS.gene041393	MS.gene028390	PPI
MS.gene028390	MS.gene024000	PPI
MS.gene028390	MS.gene012215	PPI
MS.gene028390	MS.gene033079	PPI
MS.gene028390	MS.gene034677	PPI
MS.gene059156	MS.gene028390	PPI
MS.gene028390	MS.gene055694	PPI
MS.gene84698	MS.gene028390	PPI
MS.gene028390	MS.gene059101	PPI
MS.gene028390	MS.gene58316	PPI
MS.gene009891	MS.gene028390	PPI
MS.gene066641	MS.gene028390	PPI
MS.gene82082	MS.gene028390	PPI
MS.gene028390	MS.gene87584	PPI
MS.gene028390	MS.gene58321	PPI
MS.gene000038	MS.gene028390	PPI
MS.gene028390	MS.gene87564	PPI
MS.gene028390	MS.gene58315	PPI
MS.gene57535	MS.gene028390	PPI
MS.gene025887	MS.gene028390	PPI
MS.gene028390	MS.gene90743	PPI
MS.gene87200	MS.gene028390	PPI
MS.gene028390	MS.gene50311	PPI
MS.gene028390	MS.gene85454	PPI
MS.gene028390	MS.gene036556	PPI
MS.gene028390	MS.gene57538	PPI
MS.gene015089	MS.gene028390	PPI
MS.gene028390	MS.gene058693	PPI
MS.gene028390	MS.gene27319	PPI
MS.gene028390	MS.gene041395	PPI
MS.gene44885	MS.gene028390	PPI
MS.gene011679	MS.gene028390	PPI
MS.gene060370	MS.gene028390	PPI
MS.gene50327	MS.gene028390	PPI
MS.gene066635	MS.gene028390	PPI
MS.gene57533	MS.gene028390	PPI
MS.gene010758	MS.gene028390	PPI
MS.gene028390	MS.gene24286	PPI
MS.gene028390	MS.gene064083	PPI
MS.gene87586	MS.gene028390	PPI
MS.gene028390	MS.gene58783	PPI
MS.gene028390	MS.gene024420	PPI
MS.gene40887	MS.gene028390	PPI
MS.gene028390	MS.gene40988	PPI
MS.gene50339	MS.gene028390	PPI
MS.gene046958	MS.gene028390	PPI
MS.gene028390	MS.gene54541	PPI
MS.gene028390	MS.gene39265	PPI
MS.gene028390	MS.gene24173	PPI
MS.gene028390	MS.gene036584	PPI
MS.gene028390	MS.gene036662	PPI
MS.gene060366	MS.gene028390	PPI
MS.gene028390	MS.gene060368	PPI
MS.gene028390	MS.gene28758	PPI
MS.gene028390	MS.gene044429	PPI
MS.gene028390	MS.gene42451	PPI
MS.gene57529	MS.gene028390	PPI
MS.gene028390	MS.gene69307	PPI
MS.gene028390	MS.gene036581	PPI
MS.gene028390	MS.gene019507	PPI
MS.gene40902	MS.gene028390	PPI
MS.gene028390	MS.gene033431	PPI
MS.gene27051	MS.gene028390	PPI
MS.gene028390	MS.gene034762	PPI
MS.gene021553	MS.gene028390	PPI
MS.gene028390	MS.gene59943	PPI
MS.gene26957	MS.gene028390	PPI
MS.gene060368	MS.gene028390	PPI
MS.gene033875	MS.gene028390	PPI
MS.gene028390	MS.gene50320	PPI
MS.gene036582	MS.gene028390	PPI
MS.gene028390	MS.gene58314	PPI
MS.gene27021	MS.gene028390	PPI
MS.gene028390	MS.gene87557	PPI
MS.gene066620	MS.gene028390	PPI
MS.gene035236	MS.gene028390	PPI
MS.gene58320	MS.gene028390	PPI
MS.gene028390	MS.gene67501	PPI
MS.gene028390	MS.gene96406	PPI
MS.gene028390	MS.gene035262	PPI
MS.gene58781	MS.gene028390	PPI
MS.gene011106	MS.gene028390	PPI
MS.gene033440	MS.gene028390	PPI
MS.gene62398	MS.gene028390	PPI
MS.gene028390	MS.gene40878	PPI
MS.gene60027	MS.gene028390	PPI
MS.gene44886	MS.gene028390	PPI
MS.gene038756	MS.gene028390	PPI
MS.gene40904	MS.gene028390	PPI
MS.gene35068	MS.gene028390	PPI
MS.gene041390	MS.gene028390	PPI
MS.gene24286	MS.gene028390	PPI
MS.gene028390	MS.gene058703	PPI
MS.gene92376	MS.gene028390	PPI
MS.gene000035	MS.gene028390	PPI
MS.gene50329	MS.gene028390	PPI
MS.gene028390	MS.gene047279	PPI
MS.gene31637	MS.gene028390	PPI
MS.gene87573	MS.gene028390	PPI
MS.gene028390	MS.gene032969	PPI
MS.gene57537	MS.gene028390	PPI
MS.gene019504	MS.gene028390	PPI
MS.gene034762	MS.gene028390	PPI
MS.gene028390	MS.gene42445	PPI
MS.gene028390	MS.gene86273	PPI
MS.gene028390	MS.gene26830	PPI
MS.gene028390	MS.gene22715	PPI
MS.gene028390	MS.gene51207	PPI
MS.gene58716	MS.gene028390	PPI
MS.gene033444	MS.gene028390	PPI
MS.gene019505	MS.gene028390	PPI
MS.gene50306	MS.gene028390	PPI
MS.gene028390	MS.gene36595	PPI
MS.gene58785	MS.gene028390	PPI
MS.gene028390	MS.gene024004	PPI
MS.gene028390	MS.gene045140	PPI
MS.gene028390	MS.gene070462	PPI
MS.gene066639	MS.gene028390	PPI
MS.gene26949	MS.gene028390	PPI
MS.gene028390	MS.gene061240	PPI
MS.gene50309	MS.gene028390	PPI
MS.gene036760	MS.gene028390	PPI
MS.gene028390	MS.gene041473	PPI
MS.gene58311	MS.gene028390	PPI
MS.gene028390	MS.gene064086	PPI
MS.gene57527	MS.gene028390	PPI
MS.gene028390	MS.gene035234	PPI
MS.gene028390	MS.gene058989	PPI
MS.gene033432	MS.gene028390	PPI
MS.gene028390	MS.gene041468	PPI
MS.gene033426	MS.gene028390	PPI
MS.gene59639	MS.gene028390	PPI
MS.gene028390	MS.gene42447	PPI
MS.gene67687	MS.gene028390	PPI
MS.gene028390	MS.gene51189	PPI
MS.gene035261	MS.gene028390	PPI
MS.gene028390	MS.gene046958	PPI
MS.gene063670	MS.gene028390	PPI
MS.gene028390	MS.gene044425	PPI
MS.gene57530	MS.gene028390	PPI
MS.gene019506	MS.gene028390	PPI
MS.gene50326	MS.gene028390	PPI
MS.gene51200	MS.gene028390	PPI
MS.gene028390	MS.gene59637	PPI
MS.gene69309	MS.gene028390	PPI
MS.gene024002	MS.gene028390	PPI
MS.gene88774	MS.gene028390	PPI
MS.gene028390	MS.gene27022	PPI
MS.gene034686	MS.gene028390	PPI
MS.gene40982	MS.gene028390	PPI
MS.gene028390	MS.gene035261	PPI
MS.gene42452	MS.gene028390	PPI
MS.gene028390	MS.gene87585	PPI
MS.gene028390	MS.gene023999	PPI
MS.gene028390	MS.gene024009	PPI
MS.gene028390	MS.gene036599	PPI
MS.gene063414	MS.gene028390	PPI
MS.gene036662	MS.gene028390	PPI
MS.gene028390	MS.gene035237	PPI
MS.gene87563	MS.gene028390	PPI
MS.gene57526	MS.gene028390	PPI
MS.gene028390	MS.gene000036	PPI
MS.gene051820	MS.gene028390	PPI
MS.gene97996	MS.gene028390	PPI
MS.gene028390	MS.gene50309	PPI
MS.gene028390	MS.gene035263	PPI
MS.gene81242	MS.gene028390	PPI
MS.gene26101	MS.gene028390	PPI
MS.gene27283	MS.gene028390	PPI
MS.gene64203	MS.gene028390	PPI
MS.gene028390	MS.gene036664	PPI
MS.gene045140	MS.gene028390	PPI
MS.gene028390	MS.gene053257	PPI
MS.gene028390	MS.gene77858	PPI
MS.gene028390	MS.gene51201	PPI
MS.gene024004	MS.gene028390	PPI
MS.gene42444	MS.gene028390	PPI
MS.gene028390	MS.gene009893	PPI
MS.gene51202	MS.gene028390	PPI
MS.gene028390	MS.gene50336	PPI
MS.gene87562	MS.gene028390	PPI
MS.gene028390	MS.gene77704	PPI
MS.gene028390	MS.gene50305	PPI
MS.gene87569	MS.gene028390	PPI
MS.gene064104	MS.gene028390	PPI
MS.gene041491	MS.gene028390	PPI
MS.gene028390	MS.gene68890	PPI
MS.gene033443	MS.gene028390	PPI
MS.gene059096	MS.gene028390	PPI
MS.gene028390	MS.gene036663	PPI
MS.gene57528	MS.gene028390	PPI
MS.gene028390	MS.gene68580	PPI
MS.gene50297	MS.gene028390	PPI
MS.gene006711	MS.gene028390	PPI
MS.gene028390	MS.gene57525	PPI
MS.gene27285	MS.gene028390	PPI
MS.gene028390	MS.gene63657	PPI
MS.gene064091	MS.gene028390	PPI
MS.gene028390	MS.gene059157	PPI
MS.gene064112	MS.gene028390	PPI
MS.gene028390	MS.gene023996	PPI
MS.gene028390	MS.gene030114	PPI
MS.gene045476	MS.gene028390	PPI
MS.gene24208	MS.gene028390	PPI
MS.gene028390	MS.gene045473	PPI
MS.gene50307	MS.gene028390	PPI
MS.gene028390	MS.gene50301	PPI
MS.gene43796	MS.gene028390	PPI
MS.gene034690	MS.gene028390	PPI
MS.gene028390	MS.gene031590	PPI
MS.gene96407	MS.gene028390	PPI
MS.gene77857	MS.gene028390	PPI
MS.gene028390	MS.gene40984	PPI
MS.gene028390	MS.gene066623	PPI
MS.gene51191	MS.gene028390	PPI
MS.gene028390	MS.gene064090	PPI
MS.gene028390	MS.gene58317	PPI
MS.gene028390	MS.gene90742	PPI
MS.gene033430	MS.gene028390	PPI
MS.gene028390	MS.gene24212	PPI
MS.gene50298	MS.gene028390	PPI
MS.gene028390	MS.gene50332	PPI
MS.gene028390	MS.gene024979	PPI
MS.gene036583	MS.gene028390	PPI
MS.gene88780	MS.gene028390	PPI
MS.gene028390	MS.gene24826	PPI
MS.gene028390	MS.gene063472	PPI
MS.gene028390	MS.gene43790	PPI
MS.gene028390	MS.gene034680	PPI
MS.gene71159	MS.gene028390	PPI
MS.gene96448	MS.gene028390	PPI
MS.gene77858	MS.gene028390	PPI
MS.gene058692	MS.gene028390	PPI
MS.gene041392	MS.gene028390	PPI
MS.gene028390	MS.gene50327	PPI
MS.gene028390	MS.gene066626	PPI
MS.gene033083	MS.gene028390	PPI
MS.gene63658	MS.gene028390	PPI
MS.gene033081	MS.gene028390	PPI
MS.gene028390	MS.gene063474	PPI
MS.gene028390	MS.gene88416	PPI
MS.gene031591	MS.gene028390	PPI
MS.gene028390	MS.gene57530	PPI
MS.gene035262	MS.gene028390	PPI
MS.gene028390	MS.gene003076	PPI
MS.gene070461	MS.gene028390	PPI
MS.gene51199	MS.gene028390	PPI
MS.gene028390	MS.gene009892	PPI
MS.gene019503	MS.gene028390	PPI
MS.gene028390	MS.gene006705	PPI
MS.gene87559	MS.gene028390	PPI
MS.gene028390	MS.gene061241	PPI
MS.gene028390	MS.gene51188	PPI
MS.gene033431	MS.gene028390	PPI
MS.gene028390	MS.gene38220	PPI
MS.gene041475	MS.gene028390	PPI
MS.gene028390	MS.gene40986	PPI
MS.gene31587	MS.gene028390	PPI
MS.gene033441	MS.gene028390	PPI
MS.gene028390	MS.gene041394	PPI
MS.gene028390	MS.gene034688	PPI
MS.gene028390	MS.gene03060	PPI
MS.gene028390	MS.gene24213	PPI
MS.gene028390	MS.gene033440	PPI
MS.gene028390	MS.gene024011	PPI
MS.gene028390	MS.gene58241	PPI
MS.gene063826	MS.gene028390	PPI
MS.gene060367	MS.gene028390	PPI
MS.gene028390	MS.gene064109	PPI
MS.gene028390	MS.gene058696	PPI
MS.gene44892	MS.gene028390	PPI
MS.gene028390	MS.gene035238	PPI
MS.gene028390	MS.gene85043	PPI
MS.gene028390	MS.gene064114	PPI
MS.gene58239	MS.gene028390	PPI
MS.gene57531	MS.gene028390	PPI
MS.gene064111	MS.gene028390	PPI
MS.gene028390	MS.gene80610	PPI
MS.gene028390	MS.gene033083	PPI
MS.gene26829	MS.gene028390	PPI
MS.gene39262	MS.gene028390	PPI
MS.gene053256	MS.gene028390	PPI
MS.gene75875	MS.gene028390	PPI
MS.gene041470	MS.gene028390	PPI
MS.gene058694	MS.gene028390	PPI
MS.gene028390	MS.gene40886	PPI
MS.gene54049	MS.gene028390	PPI
MS.gene43789	MS.gene028390	PPI
MS.gene028390	MS.gene041391	PPI
MS.gene006710	MS.gene028390	PPI
MS.gene028390	MS.gene033443	PPI
MS.gene072177	MS.gene028390	PPI
MS.gene58722	MS.gene028390	PPI
MS.gene64001	MS.gene028390	PPI
MS.gene028390	MS.gene045474	PPI
MS.gene028390	MS.gene058701	PPI
MS.gene028390	MS.gene036558	PPI
MS.gene58312	MS.gene028390	PPI
MS.gene36704	MS.gene028390	PPI
MS.gene032970	MS.gene028390	PPI
MS.gene028390	MS.gene87554	PPI
MS.gene028390	MS.gene009891	PPI
MS.gene028390	MS.gene27051	PPI
MS.gene77856	MS.gene028390	PPI
MS.gene028390	MS.gene064108	PPI
MS.gene028390	MS.gene048193	PPI
MS.gene028390	MS.gene016220	PPI
MS.gene58313	MS.gene028390	PPI
MS.gene028390	MS.gene024008	PPI
MS.gene028390	MS.gene50337	PPI
MS.gene066622	MS.gene028390	PPI
MS.gene44887	MS.gene028390	PPI
MS.gene85043	MS.gene028390	PPI
MS.gene63655	MS.gene028390	PPI
MS.gene44883	MS.gene028390	PPI
MS.gene028390	MS.gene053299	PPI
MS.gene41046	MS.gene028390	PPI
MS.gene028390	MS.gene58240	PPI
MS.gene87588	MS.gene028390	PPI
MS.gene017412	MS.gene028390	PPI
MS.gene028390	MS.gene27284	PPI
MS.gene80884	MS.gene028390	PPI
MS.gene028390	MS.gene57717	PPI
MS.gene028390	MS.gene48221	PPI
MS.gene51192	MS.gene028390	PPI
MS.gene009883	MS.gene028390	PPI
MS.gene58317	MS.gene028390	PPI
MS.gene044563	MS.gene028390	PPI
MS.gene069075	MS.gene028390	PPI
MS.gene033427	MS.gene028390	PPI
MS.gene028390	MS.gene51190	PPI
MS.gene028390	MS.gene58319	PPI
MS.gene40985	MS.gene028390	PPI
MS.gene028390	MS.gene044426	PPI
MS.gene028390	MS.gene034681	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028390.t1	MTR_4g094365	79.104	134	26	1	1	132	231	364	2.37e-69	213
MS.gene028390.t1	MTR_8g433040	61.364	132	49	1	1	132	235	364	1.39e-47	157
MS.gene028390.t1	MTR_8g032380	61.364	132	49	1	1	132	235	364	1.39e-47	157
MS.gene028390.t1	MTR_8g433030	62.992	127	44	2	1	126	212	336	4.90e-46	152
MS.gene028390.t1	MTR_8g032390	62.992	127	44	2	1	126	245	369	1.26e-45	152
MS.gene028390.t1	MTR_4g122850	57.463	134	54	3	1	132	232	364	8.49e-45	150
MS.gene028390.t1	MTR_4g116330	56.296	135	56	2	1	132	246	380	5.73e-44	147
MS.gene028390.t1	MTR_6g060650	56.061	132	55	2	1	131	243	372	1.82e-42	144
MS.gene028390.t1	MTR_8g040935	54.478	134	58	2	2	132	75	208	1.06e-41	137
MS.gene028390.t1	MTR_4g109270	56.391	133	57	1	1	132	232	364	2.15e-41	140
MS.gene028390.t1	MTR_3g103020	54.887	133	59	1	1	132	246	378	3.70e-41	140
MS.gene028390.t1	MTR_4g116320	55.725	131	55	2	1	129	126	255	4.27e-41	137
MS.gene028390.t1	MTR_4g109280	57.037	135	52	4	1	132	228	359	5.58e-41	139
MS.gene028390.t1	MTR_4g117870	51.562	128	61	1	5	132	141	267	6.66e-36	124
MS.gene028390.t1	MTR_4g117780	57.143	112	47	1	22	132	256	367	2.03e-35	125
MS.gene028390.t1	MTR_4g117770	57.143	112	47	1	22	132	256	367	2.48e-35	125
MS.gene028390.t1	MTR_4g117810	57.143	112	47	1	22	132	256	367	2.48e-35	125
MS.gene028390.t1	MTR_4g117720	51.515	132	56	4	1	126	242	371	3.28e-35	125
MS.gene028390.t1	MTR_4g023130	53.383	133	56	4	1	131	184	312	4.01e-35	123
MS.gene028390.t1	MTR_3g034180	52.632	133	59	3	1	132	360	489	4.20e-35	126
MS.gene028390.t1	MTR_4g117850	53.968	126	56	2	2	125	248	373	4.68e-35	124
MS.gene028390.t1	MTR_4g023080	51.880	133	58	4	1	131	225	353	1.05e-33	120
MS.gene028390.t1	MTR_4g118360	50.781	128	56	5	8	131	1	125	1.61e-33	114
MS.gene028390.t1	MTR_4g122860	52.344	128	53	3	10	132	196	320	1.79e-33	119
MS.gene028390.t1	MTR_5g097210	52.344	128	59	1	2	129	235	360	2.65e-33	120
MS.gene028390.t1	MTR_1g055175	47.727	132	67	2	1	131	70	200	2.78e-33	115
MS.gene028390.t1	MTR_4g023380	45.223	157	59	5	1	132	225	379	3.53e-33	119
MS.gene028390.t1	MTR_4g118370	50.769	130	59	3	1	129	132	257	1.40e-32	115
MS.gene028390.t1	MTR_4g023090	46.479	142	57	5	1	126	240	378	2.21e-32	117
MS.gene028390.t1	MTR_5g023000	55.556	99	43	1	35	132	1	99	2.47e-32	110
MS.gene028390.t1	MTR_4g116330	55.856	111	46	2	25	132	231	341	5.45e-32	115
MS.gene028390.t1	MTR_1g055165	47.727	132	67	2	1	131	187	317	6.90e-32	115
MS.gene028390.t1	MTR_4g117750	55.556	108	47	1	24	130	374	481	3.20e-31	115
MS.gene028390.t1	MTR_4g117750	46.281	121	60	3	12	131	242	358	1.27e-24	97.8
MS.gene028390.t1	MTR_4g021785	48.529	136	60	4	1	132	226	355	3.93e-31	114
MS.gene028390.t1	MTR_6g463430	50.000	134	60	4	1	132	74	202	4.08e-31	110
MS.gene028390.t1	MTR_1g055195	50.781	128	58	3	1	126	348	472	7.01e-31	115
MS.gene028390.t1	MTR_4g023070	45.833	144	62	4	2	131	228	369	1.77e-30	112
MS.gene028390.t1	MTR_3g034160	53.030	132	58	3	1	131	246	374	8.09e-30	110
MS.gene028390.t1	MTR_4g023120	44.595	148	60	4	2	132	228	370	2.18e-29	109
MS.gene028390.t1	MTR_1g055135	47.794	136	64	4	1	131	241	374	2.22e-29	109
MS.gene028390.t1	MTR_5g070080	48.413	126	63	2	2	126	255	379	5.24e-29	108
MS.gene028390.t1	MTR_3g034130	51.351	111	51	2	1	110	246	354	5.46e-29	108
MS.gene028390.t1	MTR_5g070130	46.875	128	66	2	1	126	243	370	1.64e-28	107
MS.gene028390.t1	MTR_4g023190	45.985	137	63	6	1	130	225	357	5.98e-28	105
MS.gene028390.t1	MTR_4g023200	45.985	137	63	6	1	130	226	358	1.34e-27	104
MS.gene028390.t1	MTR_4g118380	47.826	115	48	3	1	105	245	357	7.25e-27	102
MS.gene028390.t1	MTR_7g079450	46.212	132	65	4	2	132	11	137	1.09e-26	97.1
MS.gene028390.t1	MTR_4g023150	45.255	137	64	6	1	130	226	358	1.62e-26	101
MS.gene028390.t1	MTR_4g117530	51.376	109	47	3	25	132	150	253	1.75e-26	99.8
MS.gene028390.t1	MTR_8g102520	46.269	134	66	4	2	132	192	322	8.71e-26	99.4
MS.gene028390.t1	MTR_4g118400	45.238	126	54	3	2	126	183	294	1.57e-25	98.2
MS.gene028390.t1	MTR_5g070088	43.750	128	70	2	1	126	252	379	2.33e-24	96.3
MS.gene028390.t1	MTR_4g023440	56.383	94	36	3	41	132	242	332	2.86e-24	95.5
MS.gene028390.t1	MTR_1g055250	46.667	105	54	2	2	106	140	242	2.10e-23	92.8
MS.gene028390.t1	MTR_7g079400	43.478	138	68	5	2	132	203	337	9.55e-22	88.6
MS.gene028390.t1	MTR_4g114700	54.023	87	36	2	41	123	132	218	3.92e-20	82.8
MS.gene028390.t1	MTR_7g117720	55.814	86	33	3	46	126	186	271	6.85e-19	80.1
MS.gene028390.t1	MTR_4g122840	38.931	131	45	3	3	132	168	264	1.04e-18	79.3
MS.gene028390.t1	MTR_4g121580	41.221	131	62	5	4	131	230	348	1.08e-18	80.9
MS.gene028390.t1	MTR_8g013005	61.017	59	23	0	74	132	1	59	7.48e-17	69.7
MS.gene028390.t1	MTR_4g023430	53.659	82	32	3	56	132	142	222	2.00e-16	72.8
MS.gene028390.t1	MTR_7g079420	39.231	130	70	5	2	126	1013	1138	4.41e-16	73.9
MS.gene028390.t1	MTR_7g079370	41.085	129	67	5	2	126	227	350	4.63e-16	73.2
MS.gene028390.t1	MTR_8g098830	43.396	106	54	4	2	105	97	198	5.41e-16	71.6
MS.gene028390.t1	MTR_4g023100	56.140	57	23	1	76	132	65	119	1.30e-13	63.2
MS.gene028390.t1	MTR_4g109290	62.264	53	20	0	80	132	136	188	4.93e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 27 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATCTTGGTTCGTGGGTATT+TGG	0.245938	4.2:+18483598	MS.gene028390:CDS
ATAGCCGTACACTTAAAATA+TGG	0.266688	4.2:+18483653	MS.gene028390:CDS
TAAACTTGCTCTCTATCAAC+AGG	0.362152	4.2:-18483916	None:intergenic
CACGATGGTCCTGCATATCT+TGG	0.377345	4.2:+18483583	MS.gene028390:CDS
ATTGGATCAGACGGTGGTCT+TGG	0.412575	4.2:+18483787	MS.gene028390:CDS
ACTGTAAATTGCATCCATCT+TGG	0.460689	4.2:+18483686	MS.gene028390:CDS
TCGTGATAATCATCTGGAAC+AGG	0.478738	4.2:-18483565	None:intergenic
TTGCCTTTAATTTAATGGAA+AGG	0.482467	4.2:+18483527	None:intergenic
GTCCTGCATATCTTGGTTCG+TGG	0.485547	4.2:+18483590	MS.gene028390:CDS
GGACCATCGTGATAATCATC+TGG	0.487786	4.2:-18483571	None:intergenic
TTGGTGAAGTATAATGATAA+AGG	0.492510	4.2:+18483811	MS.gene028390:CDS
TAGCCGTACACTTAAAATAT+GGG	0.498718	4.2:+18483654	MS.gene028390:CDS
CTCTGTATACACGATCGCTT+GGG	0.514295	4.2:-18483878	None:intergenic
ACTCTGTATACACGATCGCT+TGG	0.527545	4.2:-18483879	None:intergenic
ACAAGAGTCTTAGTCCAAGA+TGG	0.541795	4.2:-18483700	None:intergenic
ATCAGACGGTGGTCTTGGAT+TGG	0.544899	4.2:+18483792	MS.gene028390:CDS
ACCCACGAACCAAGATATGC+AGG	0.553874	4.2:-18483592	None:intergenic
TCCTGCATATCTTGGTTCGT+GGG	0.554694	4.2:+18483591	MS.gene028390:CDS
GGTGATATTATTGGATCAGA+CGG	0.605256	4.2:+18483778	MS.gene028390:CDS
TAGAGGGGAAAATATGCGAA+TGG	0.624574	4.2:-18483740	None:intergenic
ACGATCGCTTGGGACCTAAG+TGG	0.637531	4.2:-18483868	None:intergenic
CCTACCGTGACTATCCACTT+AGG	0.665619	4.2:+18483854	MS.gene028390:CDS
GGGACCTAAGTGGATAGTCA+CGG	0.675794	4.2:-18483858	None:intergenic
GTTCCAGATGATTATCACGA+TGG	0.682457	4.2:+18483568	MS.gene028390:CDS
GATATTATTGGATCAGACGG+TGG	0.700053	4.2:+18483781	MS.gene028390:CDS
AAACTTGCTCTCTATCAACA+GGG	0.707501	4.2:-18483915	None:intergenic
CCTAAGTGGATAGTCACGGT+AGG	0.708448	4.2:-18483854	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ACAAAAAGTGGTGATATTAT+TGG	+	chr4.2:18483769-18483788	MS.gene028390:CDS	25.0%
!	TTGGTGAAGTATAATGATAA+AGG	+	chr4.2:18483811-18483830	MS.gene028390:CDS	25.0%
	ATAGCCGTACACTTAAAATA+TGG	+	chr4.2:18483653-18483672	MS.gene028390:CDS	30.0%
	TAGCCGTACACTTAAAATAT+GGG	+	chr4.2:18483654-18483673	MS.gene028390:CDS	30.0%
!	ACTTTTTGTAGAACATAGAG+GGG	-	chr4.2:18483758-18483777	None:intergenic	30.0%
!!	CACTTTTTGTAGAACATAGA+GGG	-	chr4.2:18483759-18483778	None:intergenic	30.0%
!!	TCACCCATATTTTAAGTGTA+CGG	-	chr4.2:18483660-18483679	None:intergenic	30.0%
!!	TGGAGAATTTTTCAGTCTAT+GGG	+	chr4.2:18483618-18483637	MS.gene028390:CDS	30.0%
!!	TTGGAGAATTTTTCAGTCTA+TGG	+	chr4.2:18483617-18483636	MS.gene028390:CDS	30.0%
	ACTGTAAATTGCATCCATCT+TGG	+	chr4.2:18483686-18483705	MS.gene028390:CDS	35.0%
	CCTCTATGTTCTACAAAAAG+TGG	+	chr4.2:18483757-18483776	MS.gene028390:CDS	35.0%
	GGTGATATTATTGGATCAGA+CGG	+	chr4.2:18483778-18483797	MS.gene028390:CDS	35.0%
!	AAACTTGCTCTCTATCAACA+GGG	-	chr4.2:18483918-18483937	None:intergenic	35.0%
!	TAAACTTGCTCTCTATCAAC+AGG	-	chr4.2:18483919-18483938	None:intergenic	35.0%
!!	ATTTTTCAGTCTATGGGCTA+TGG	+	chr4.2:18483624-18483643	MS.gene028390:CDS	35.0%
!!!	CCACTTTTTGTAGAACATAG+AGG	-	chr4.2:18483760-18483779	None:intergenic	35.0%
	ACAAGAGTCTTAGTCCAAGA+TGG	-	chr4.2:18483703-18483722	None:intergenic	40.0%
	GATATTATTGGATCAGACGG+TGG	+	chr4.2:18483781-18483800	MS.gene028390:CDS	40.0%
	GTTCCAGATGATTATCACGA+TGG	+	chr4.2:18483568-18483587	MS.gene028390:CDS	40.0%
	TAGAGGGGAAAATATGCGAA+TGG	-	chr4.2:18483743-18483762	None:intergenic	40.0%
!	TATCTTGGTTCGTGGGTATT+TGG	+	chr4.2:18483598-18483617	MS.gene028390:CDS	40.0%
!	TCGTGATAATCATCTGGAAC+AGG	-	chr4.2:18483568-18483587	None:intergenic	40.0%
	ACTCTGTATACACGATCGCT+TGG	-	chr4.2:18483882-18483901	None:intergenic	45.0%
	CTCTGTATACACGATCGCTT+GGG	-	chr4.2:18483881-18483900	None:intergenic	45.0%
	GGACCATCGTGATAATCATC+TGG	-	chr4.2:18483574-18483593	None:intergenic	45.0%
!	TCCTGCATATCTTGGTTCGT+GGG	+	chr4.2:18483591-18483610	MS.gene028390:CDS	45.0%
	ACCCACGAACCAAGATATGC+AGG	-	chr4.2:18483595-18483614	None:intergenic	50.0%
	ATTGGATCAGACGGTGGTCT+TGG	+	chr4.2:18483787-18483806	MS.gene028390:CDS	50.0%
	CACGATGGTCCTGCATATCT+TGG	+	chr4.2:18483583-18483602	MS.gene028390:CDS	50.0%
	CCTAAGTGGATAGTCACGGT+AGG	-	chr4.2:18483857-18483876	None:intergenic	50.0%
	CCTACCGTGACTATCCACTT+AGG	+	chr4.2:18483854-18483873	MS.gene028390:CDS	50.0%
	GGGACCTAAGTGGATAGTCA+CGG	-	chr4.2:18483861-18483880	None:intergenic	50.0%
!	ATCAGACGGTGGTCTTGGAT+TGG	+	chr4.2:18483792-18483811	MS.gene028390:CDS	50.0%
!	GTCCTGCATATCTTGGTTCG+TGG	+	chr4.2:18483590-18483609	MS.gene028390:CDS	50.0%
	ACGATCGCTTGGGACCTAAG+TGG	-	chr4.2:18483871-18483890	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	18483541	18483939	18483541	ID=MS.gene028390
chr4.2	mRNA	18483541	18483939	18483541	ID=MS.gene028390.t1;Parent=MS.gene028390
chr4.2	exon	18483541	18483939	18483541	ID=MS.gene028390.t1.exon1;Parent=MS.gene028390.t1
chr4.2	CDS	18483541	18483939	18483541	ID=cds.MS.gene028390.t1;Parent=MS.gene028390.t1

Gene Sequence

>MS.gene028390

ATGGAAAGGAAACTGTTAGAGATACCTGTTCCAGATGATTATCACGATGGTCCTGCATATCTTGGTTCGTGGGTATTTGGAGAATTTTTCAGTCTATGGGCTATGGATCATTATAGCCGTACACTTAAAATATGGGTGATGAATGACTGTAAATTGCATCCATCTTGGACTAAGACTCTTGTTGTTCGTATTGATGATGCCATTCGCATATTTTCCCCTCTATGTTCTACAAAAAGTGGTGATATTATTGGATCAGACGGTGGTCTTGGATTGGTGAAGTATAATGATAAAGGACAACTCTTAGAGTATTGCGCCTACCGTGACTATCCACTTAGGTCCCAAGCGATCGTGTATACAGAGTCTCTGCTTTCACTCCCTGTTGATAGAGAGCAAGTTTAA

Protein sequence

>MS.gene028390.t1

MERKLLEIPVPDDYHDGPAYLGSWVFGEFFSLWAMDHYSRTLKIWVMNDCKLHPSWTKTLVVRIDDAIRIFSPLCSTKSGDIIGSDGGLGLVKYNDKGQLLEYCAYRDYPLRSQAIVYTESLLSLPVDREQV