AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27283

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27283.t1 MTR_1g023400 93.466 352 23 0 1 352 1 352 0.0 689
MS.gene27283.t1 MTR_1g022200 63.784 370 115 10 1 358 13 375 3.44e-151 431
MS.gene27283.t1 MTR_1g009110 44.444 378 173 13 2 353 13 379 5.39e-89 273
MS.gene27283.t1 MTR_4g080200 46.257 374 154 16 1 352 1 349 7.21e-86 263
MS.gene27283.t1 MTR_1g037540 41.422 408 169 19 3 352 5 400 4.27e-69 222
MS.gene27283.t1 MTR_1g022105 38.857 350 152 10 2 337 20 321 9.91e-68 216
MS.gene27283.t1 MTR_1g023430 69.014 142 38 2 220 358 40 178 8.28e-62 196
MS.gene27283.t1 MTR_1g024125 73.214 112 29 1 225 335 38 149 1.32e-52 171
MS.gene27283.t1 MTR_1g008000 32.500 320 146 15 52 353 2 269 5.54e-24 99.8
MS.gene27283.t1 MTR_1g061330 24.474 380 231 16 3 352 4 357 4.29e-17 82.0
MS.gene27283.t1 MTR_8g093280 43.243 111 50 4 3 108 7 109 7.08e-17 75.9
MS.gene27283.t1 MTR_5g057710 27.559 254 154 11 6 244 49 287 2.00e-16 80.1
MS.gene27283.t1 MTR_2g021950 23.377 385 246 13 6 351 19 393 3.03e-16 79.7
MS.gene27283.t1 MTR_0064s0160 24.235 392 234 18 6 351 45 419 9.40e-16 78.6
MS.gene27283.t1 MTR_8g433040 25.956 366 222 16 6 351 21 357 9.74e-16 77.8
MS.gene27283.t1 MTR_8g032380 25.956 366 222 16 6 351 21 357 9.74e-16 77.8
MS.gene27283.t1 MTR_3g007360 26.537 309 161 14 6 284 55 327 1.04e-15 78.2
MS.gene27283.t1 MTR_3g083640 23.757 362 216 16 2 334 54 384 1.57e-15 77.8
MS.gene27283.t1 MTR_5g057790 27.451 255 153 11 6 244 49 287 1.57e-15 77.4
MS.gene27283.t1 MTR_2g426090 26.247 381 234 17 6 352 9 376 2.07e-15 77.4
MS.gene27283.t1 MTR_3g007410 26.214 309 162 14 6 284 55 327 3.02e-15 76.6
MS.gene27283.t1 MTR_6g065980 26.280 293 174 15 2 284 15 275 5.08e-15 75.9
MS.gene27283.t1 MTR_4g117780 26.989 352 214 15 2 332 10 339 7.11e-15 75.5
MS.gene27283.t1 MTR_8g073550 31.746 189 110 9 3 179 30 211 1.25e-14 72.8
MS.gene27283.t1 MTR_3g058480 25.182 274 163 12 2 236 38 308 1.40e-14 74.3
MS.gene27283.t1 MTR_6g053260 28.077 260 150 13 2 242 336 577 1.68e-14 75.1
MS.gene27283.t1 MTR_4g117770 26.934 349 212 15 6 333 14 340 1.85e-14 74.3
MS.gene27283.t1 MTR_4g117810 26.934 349 212 15 6 333 14 340 1.85e-14 74.3
MS.gene27283.t1 MTR_4g133170 22.888 367 217 15 2 334 3 337 2.23e-14 73.9
MS.gene27283.t1 MTR_3g009310 25.369 339 195 17 3 311 42 352 3.54e-14 73.6
MS.gene27283.t1 MTR_2g055970 27.165 254 150 12 11 249 219 452 3.62e-14 73.9
MS.gene27283.t1 MTR_3g006670 27.157 313 161 17 3 284 49 325 6.76e-14 72.8
MS.gene27283.t1 MTR_2g031720 26.246 301 179 14 6 284 9 288 7.84e-14 72.4
MS.gene27283.t1 MTR_8g012090 25.150 334 206 14 6 319 19 328 1.24e-13 71.2
MS.gene27283.t1 MTR_2g034700 21.944 360 227 13 6 334 17 353 1.33e-13 71.6
MS.gene27283.t1 MTR_2g021150 26.820 261 152 12 6 245 17 259 1.35e-13 71.6
MS.gene27283.t1 MTR_8g467140 23.735 257 159 9 6 245 35 271 1.61e-13 71.2
MS.gene27283.t1 MTR_6g080680 25.369 339 204 14 6 308 22 347 2.12e-13 71.2
MS.gene27283.t1 MTR_5g037680 24.490 343 212 13 6 314 11 340 2.33e-13 71.2
MS.gene27283.t1 MTR_7g070440 27.007 274 167 13 6 262 10 267 2.49e-13 70.9
MS.gene27283.t1 MTR_3g013740 26.667 270 145 13 6 241 47 297 4.62e-13 70.1
MS.gene27283.t1 MTR_3g034130 23.782 349 230 13 6 331 12 347 5.82e-13 69.7
MS.gene27283.t1 MTR_3g011100 24.242 330 192 17 3 302 235 536 5.97e-13 70.5
MS.gene27283.t1 MTR_0115s0020 24.219 384 234 14 2 344 9 376 6.88e-13 69.7
MS.gene27283.t1 MTR_0044s0300 23.567 314 185 16 2 291 37 319 7.21e-13 69.7
MS.gene27283.t1 MTR_0128s0070 25.503 298 159 13 1 261 20 291 1.03e-12 68.9
MS.gene27283.t1 MTR_3g030250 27.157 313 157 20 3 287 37 306 1.62e-12 68.6
MS.gene27283.t1 MTR_6g086825 24.570 407 225 18 6 352 73 457 1.71e-12 68.6
MS.gene27283.t1 MTR_5g057643 29.787 188 108 7 6 179 49 226 2.10e-12 67.0
MS.gene27283.t1 MTR_7g013590 26.333 300 181 13 3 284 36 313 2.69e-12 67.8
MS.gene27283.t1 MTR_6g048120 24.118 340 209 14 2 319 35 347 2.75e-12 67.8
MS.gene27283.t1 MTR_0128s0020 24.181 397 223 20 6 349 21 392 3.25e-12 67.4
MS.gene27283.t1 MTR_5g096710 24.745 392 233 19 6 352 26 400 3.49e-12 67.4
MS.gene27283.t1 MTR_1g068835 25.485 361 215 19 2 333 3 338 3.50e-12 67.4
MS.gene27283.t1 MTR_5g057040 30.481 187 108 7 6 179 49 226 6.04e-12 67.4
MS.gene27283.t1 MTR_4g117550 26.346 353 181 14 6 317 20 334 6.45e-12 66.6
MS.gene27283.t1 MTR_1g094210 26.939 245 149 11 6 240 60 284 6.82e-12 66.6
MS.gene27283.t1 MTR_5g010660 24.870 386 209 18 2 352 33 372 7.22e-12 66.6
MS.gene27283.t1 MTR_1g094210 26.939 245 149 11 6 240 60 284 8.01e-12 66.2
MS.gene27283.t1 MTR_3g006570 26.154 390 221 23 3 354 21 381 8.56e-12 66.2
MS.gene27283.t1 MTR_3g010870 24.104 307 187 16 3 291 37 315 9.78e-12 66.2
MS.gene27283.t1 MTR_4g063955 30.220 182 103 9 6 168 30 206 1.28e-11 64.7
MS.gene27283.t1 MTR_2g426060 25.532 235 148 8 6 219 9 237 1.31e-11 65.9
MS.gene27283.t1 MTR_4g030760 30.890 191 101 7 6 179 76 252 1.37e-11 65.9
MS.gene27283.t1 MTR_5g096630 24.331 411 237 17 1 352 16 411 2.20e-11 65.1
MS.gene27283.t1 MTR_3g014540 26.482 253 158 12 3 240 29 268 2.31e-11 65.1
MS.gene27283.t1 MTR_7g056760 27.376 263 156 9 6 240 26 281 2.33e-11 65.1
MS.gene27283.t1 MTR_3g058440 26.991 226 138 10 3 210 35 251 2.37e-11 64.3
MS.gene27283.t1 MTR_5g057690 28.016 257 139 14 6 244 49 277 2.48e-11 64.7
MS.gene27283.t1 MTR_4g033495 26.840 231 131 8 6 224 30 234 2.87e-11 64.7
MS.gene27283.t1 MTR_1g056710 24.695 328 200 17 2 312 33 330 2.89e-11 64.7
MS.gene27283.t1 MTR_5g070088 23.364 321 193 13 3 287 7 310 3.79e-11 64.3
MS.gene27283.t1 MTR_6g027910 23.604 394 232 21 3 352 9 377 4.33e-11 63.9
MS.gene27283.t1 MTR_5g046300 24.497 298 180 12 3 284 4 272 4.93e-11 63.9
MS.gene27283.t1 MTR_5g046290 24.497 298 180 12 3 284 4 272 4.93e-11 63.9
MS.gene27283.t1 MTR_4g116330 24.198 343 230 16 3 331 23 349 5.49e-11 63.9
MS.gene27283.t1 MTR_5g057020 28.352 261 142 15 3 249 46 275 5.80e-11 63.5
MS.gene27283.t1 MTR_5g027370 23.226 310 182 13 9 284 35 322 6.85e-11 63.5
MS.gene27283.t1 MTR_5g070080 25.630 238 137 8 3 210 10 237 7.29e-11 63.5
MS.gene27283.t1 MTR_5g027330 23.226 310 182 13 9 284 46 333 7.53e-11 63.5
MS.gene27283.t1 MTR_7g017040 24.355 349 219 12 6 317 19 359 8.23e-11 63.2
MS.gene27283.t1 MTR_8g032390 23.691 363 223 17 6 351 43 368 8.32e-11 63.2
MS.gene27283.t1 MTR_3g103020 24.796 367 201 19 3 331 20 349 8.65e-11 63.2
MS.gene27283.t1 MTR_1g097560 28.042 189 104 8 6 179 39 210 9.49e-11 63.2
MS.gene27283.t1 MTR_5g046260 31.148 183 100 8 3 179 4 166 9.56e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27283.t1 AT3G23260 22.177 248 168 9 2 240 5 236 1.02e-11 65.9

Find 91 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTAGAGACTGAGATTT+TGG 0.228625 1.1:+1344289 MS.gene27283:CDS
CTCCCGTCATCTTGAGCATT+TGG 0.258740 1.1:+1345086 MS.gene27283:CDS
AATCAACATCAATTTGAAAT+TGG 0.285324 1.1:-1345264 None:intergenic
GCCCTCTGAGTTGGTGAAAC+TGG 0.301844 1.1:-1344970 None:intergenic
TGGTGTGTGGTCTTAGTAAA+AGG 0.318775 1.1:-1344833 None:intergenic
ATATCAGAGAAGATGAATTT+AGG 0.330816 1.1:+1344263 None:intergenic
TAATTCCATCATAACTAGTA+TGG 0.350426 1.1:-1344748 None:intergenic
ATAGAATATTTGCAACAAAA+TGG 0.364437 1.1:-1344928 None:intergenic
GACTCATGCATGTATGGTTT+CGG 0.365854 1.1:+1344683 MS.gene27283:CDS
AAACACATCAATGAATTTAG+AGG 0.380943 1.1:-1344320 None:intergenic
TCCCGTCATCTTGAGCATTT+GGG 0.381975 1.1:+1345087 MS.gene27283:CDS
TTGTTAACAGCGTTTATCAT+TGG 0.387639 1.1:+1344879 MS.gene27283:CDS
ATAATTTAAGTACCAACTCT+TGG 0.412072 1.1:+1344789 MS.gene27283:CDS
GAGGGATTTGATGTGTATTA+CGG 0.412566 1.1:-1344483 None:intergenic
TTAGATGTGTCCAACGGTCT+TGG 0.424141 1.1:+1344342 MS.gene27283:CDS
CATCTTGAGCATTTGGGTGA+TGG 0.434538 1.1:+1345093 MS.gene27283:CDS
GACAGCGACTCATGCATGTA+TGG 0.435390 1.1:+1344677 MS.gene27283:CDS
CGGTGGACCTCTCTAGTTGT+TGG 0.437420 1.1:-1344632 None:intergenic
GACAATTGCTGTTGGAAAAG+AGG 0.441297 1.1:-1344502 None:intergenic
CCTTGTCGACCTATCTAGCT+AGG 0.454046 1.1:+1345323 MS.gene27283:CDS
AACTTTGAAGTTGATGTTGT+TGG 0.457396 1.1:-1344717 None:intergenic
ATGATTATAGCAACTTTGCA+TGG 0.461665 1.1:+1345005 MS.gene27283:CDS
TCTGTCTCCAAGGTTTGTGT+TGG 0.467072 1.1:+1344570 MS.gene27283:CDS
AAACTCCATACTAGTTATGA+TGG 0.471735 1.1:+1344743 MS.gene27283:CDS
AAAGGAAGAGGATGTTCAGT+TGG 0.476611 1.1:-1344815 None:intergenic
GGTGGACCTCTCTAGTTGTT+GGG 0.479668 1.1:-1344631 None:intergenic
CAAATCCTTGGAGGAAAGGT+TGG 0.481459 1.1:+1345199 MS.gene27283:CDS
ACTTTGAAGTTGATGTTGTT+GGG 0.482647 1.1:-1344716 None:intergenic
CTATCTAGCTAGGGCACACT+AGG 0.484374 1.1:+1345333 MS.gene27283:CDS
AAGGAAGAGGATGTTCAGTT+GGG 0.484768 1.1:-1344814 None:intergenic
GCCGAGATCAAAGGTTCCCT+TGG 0.490016 1.1:+1345037 MS.gene27283:CDS
CTAGTGTGCCCTAGCTAGAT+AGG 0.491771 1.1:-1345332 None:intergenic
ACAAGAGTGCTATATCTAGA+AGG 0.495385 1.1:-1344860 None:intergenic
TGTTTCGTATGTGTGGCCTT+TGG 0.504996 1.1:+1345164 MS.gene27283:CDS
TATGAAACCAACACAAACCT+TGG 0.505418 1.1:-1344577 None:intergenic
GTTGATGTTGTTGGGATCAT+CGG 0.508372 1.1:-1344708 None:intergenic
GTCGACAAGGGAGCTATGCT+TGG 0.515430 1.1:-1345310 None:intergenic
ACCCAAATGCTCAAGATGAC+GGG 0.515580 1.1:-1345088 None:intergenic
AGAACCCCACCTTTATGAAA+AGG 0.517821 1.1:+1344378 MS.gene27283:CDS
AAGAATGGCGATCAAATCCT+TGG 0.518473 1.1:+1345187 MS.gene27283:CDS
ACAATTGCTGTTGGAAAAGA+GGG 0.521076 1.1:-1344501 None:intergenic
GTTCTCCAACCTTTCCTCCA+AGG 0.525401 1.1:-1345204 None:intergenic
AAAAGTGCGACAATTGCTGT+TGG 0.525891 1.1:-1344510 None:intergenic
ATGTGTGGCCTTTGGAAGAA+TGG 0.525913 1.1:+1345172 MS.gene27283:CDS
TGATTATAGCAACTTTGCAT+GGG 0.536071 1.1:+1345006 MS.gene27283:CDS
TTCAGTTGGGGTCCAAGAGT+TGG 0.536792 1.1:-1344801 None:intergenic
ACCAAGGGAACCTTTGATCT+CGG 0.537068 1.1:-1345038 None:intergenic
CGATCAAATCCTTGGAGGAA+AGG 0.537340 1.1:+1345195 MS.gene27283:CDS
TTTGATCGCCATTCTTCCAA+AGG 0.545314 1.1:-1345180 None:intergenic
CACCCAAATGCTCAAGATGA+CGG 0.555873 1.1:-1345089 None:intergenic
CTCACATCATATGACTATCA+AGG 0.557817 1.1:+1345229 MS.gene27283:CDS
GATTGTGTTGCCGAGATCAA+AGG 0.560123 1.1:+1345028 MS.gene27283:CDS
TGGATTATAAGCAGTTCATA+CGG 0.560788 1.1:+1344899 MS.gene27283:CDS
TTTATAAGAATGGAATCATA+CGG 0.562387 1.1:+1344530 MS.gene27283:CDS
GTGGTCTTAGTAAAAGGAAG+AGG 0.563530 1.1:-1344827 None:intergenic
GTCTTGATGAGTTGATTATG+TGG 0.567130 1.1:+1344606 MS.gene27283:CDS
CATGAGAGAAGAGTTACGTA+GGG 0.571999 1.1:-1344455 None:intergenic
GAATCATACGGTAGTTGCAA+TGG 0.573781 1.1:+1344542 MS.gene27283:CDS
TCGCTGTCAAGGCAGAGCCT+CGG 0.581840 1.1:-1344662 None:intergenic
TAAGATCATTCCAAGACCGT+TGG 0.582316 1.1:-1344352 None:intergenic
TGCTATATCTAGAAGGACAT+TGG 0.583334 1.1:-1344853 None:intergenic
ACATGCATGAGTCGCTGTCA+AGG 0.587596 1.1:-1344673 None:intergenic
CTATAATCATATGAGAAGGT+TGG 0.594270 1.1:-1344992 None:intergenic
AGAAGGTTGGCCCTCTGAGT+TGG 0.594377 1.1:-1344979 None:intergenic
AATGGCGATCAAATCCTTGG+AGG 0.596817 1.1:+1345190 MS.gene27283:CDS
GGCAGAGCCTCGGAGGAACA+CGG 0.598335 1.1:-1344652 None:intergenic
CTTGTCGACCTATCTAGCTA+GGG 0.600363 1.1:+1345324 MS.gene27283:CDS
ACCAGTTTCACCAACTCAGA+GGG 0.601175 1.1:+1344969 MS.gene27283:CDS
TACGAAACATTGACACAAGT+GGG 0.601347 1.1:-1345150 None:intergenic
GTTGCTATAATCATATGAGA+AGG 0.609576 1.1:-1344996 None:intergenic
GTGTCAATGTTTCGTATGTG+TGG 0.615188 1.1:+1345157 MS.gene27283:CDS
TACAATGCACAACATAACCA+AGG 0.616377 1.1:-1345054 None:intergenic
CTGTCAAGGCAGAGCCTCGG+AGG 0.616821 1.1:-1344659 None:intergenic
ATACGAAACATTGACACAAG+TGG 0.622567 1.1:-1345151 None:intergenic
TCATAAAGGATCATGAGACT+AGG 0.634401 1.1:-1344425 None:intergenic
CCTAGCTAGATAGGTCGACA+AGG 0.638285 1.1:-1345323 None:intergenic
ACAATGCACAACATAACCAA+GGG 0.652154 1.1:-1345053 None:intergenic
ACATGAGAGAAGAGTTACGT+AGG 0.654150 1.1:-1344456 None:intergenic
ACCCCACCTTTATGAAAAGG+AGG 0.658364 1.1:+1344381 MS.gene27283:CDS
AGGTCCACCGTGTTCCTCCG+AGG 0.662733 1.1:+1344645 MS.gene27283:CDS
AACCAGTTTCACCAACTCAG+AGG 0.670970 1.1:+1344968 MS.gene27283:CDS
GGGTGATGGATCAAAGTGGA+TGG 0.671155 1.1:+1345107 MS.gene27283:CDS
TGATGGAATTATGAGATCAG+CGG 0.673695 1.1:+1344760 MS.gene27283:CDS
GTGGAACCCAACAACTAGAG+AGG 0.673963 1.1:+1344625 MS.gene27283:CDS
AGGAAGAGGATGTTCAGTTG+GGG 0.674344 1.1:-1344813 None:intergenic
TGATAGTCATATGATGTGAG+CGG 0.685126 1.1:-1345226 None:intergenic
GTTGGTGAAACTGGTTGTTG+CGG 0.693105 1.1:-1344961 None:intergenic
TCTAGAAGGACATTGGTGTG+TGG 0.699232 1.1:-1344846 None:intergenic
CTAGCTAGATAGGTCGACAA+GGG 0.718320 1.1:-1345322 None:intergenic
ATTTGGGTGATGGATCAAAG+TGG 0.755177 1.1:+1345103 MS.gene27283:CDS
AGAGCCTCGGAGGAACACGG+TGG 0.797176 1.1:-1344649 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAATATTTGCAACAAAA+TGG - chr1.1:1344931-1344950 None:intergenic 20.0%
!! TTTATAAGAATGGAATCATA+CGG + chr1.1:1344530-1344549 MS.gene27283:CDS 20.0%
!!! AATCAACATCAATTTGAAAT+TGG - chr1.1:1345267-1345286 None:intergenic 20.0%
! AAACACATCAATGAATTTAG+AGG - chr1.1:1344323-1344342 None:intergenic 25.0%
! ATAATTTAAGTACCAACTCT+TGG + chr1.1:1344789-1344808 MS.gene27283:CDS 25.0%
! TAATTCCATCATAACTAGTA+TGG - chr1.1:1344751-1344770 None:intergenic 25.0%
AAACTCCATACTAGTTATGA+TGG + chr1.1:1344743-1344762 MS.gene27283:CDS 30.0%
ATGATTATAGCAACTTTGCA+TGG + chr1.1:1345005-1345024 MS.gene27283:CDS 30.0%
CTATAATCATATGAGAAGGT+TGG - chr1.1:1344995-1345014 None:intergenic 30.0%
GTTGCTATAATCATATGAGA+AGG - chr1.1:1344999-1345018 None:intergenic 30.0%
TGATTATAGCAACTTTGCAT+GGG + chr1.1:1345006-1345025 MS.gene27283:CDS 30.0%
TGGATTATAAGCAGTTCATA+CGG + chr1.1:1344899-1344918 MS.gene27283:CDS 30.0%
TTGTTAACAGCGTTTATCAT+TGG + chr1.1:1344879-1344898 MS.gene27283:CDS 30.0%
! AGATTTAGAGACTGAGATTT+TGG + chr1.1:1344289-1344308 MS.gene27283:CDS 30.0%
! TTGTCGCACTTTTATAAGAA+TGG + chr1.1:1344520-1344539 MS.gene27283:CDS 30.0%
!! AACTTTGAAGTTGATGTTGT+TGG - chr1.1:1344720-1344739 None:intergenic 30.0%
!! ACTTTGAAGTTGATGTTGTT+GGG - chr1.1:1344719-1344738 None:intergenic 30.0%
ACAATGCACAACATAACCAA+GGG - chr1.1:1345056-1345075 None:intergenic 35.0%
ATACGAAACATTGACACAAG+TGG - chr1.1:1345154-1345173 None:intergenic 35.0%
CTCACATCATATGACTATCA+AGG + chr1.1:1345229-1345248 MS.gene27283:CDS 35.0%
GAGGGATTTGATGTGTATTA+CGG - chr1.1:1344486-1344505 None:intergenic 35.0%
TACAATGCACAACATAACCA+AGG - chr1.1:1345057-1345076 None:intergenic 35.0%
TACGAAACATTGACACAAGT+GGG - chr1.1:1345153-1345172 None:intergenic 35.0%
TATGAAACCAACACAAACCT+TGG - chr1.1:1344580-1344599 None:intergenic 35.0%
TCATAAAGGATCATGAGACT+AGG - chr1.1:1344428-1344447 None:intergenic 35.0%
TGATAGTCATATGATGTGAG+CGG - chr1.1:1345229-1345248 None:intergenic 35.0%
TGATGGAATTATGAGATCAG+CGG + chr1.1:1344760-1344779 MS.gene27283:CDS 35.0%
TGCTATATCTAGAAGGACAT+TGG - chr1.1:1344856-1344875 None:intergenic 35.0%
! ACAATTGCTGTTGGAAAAGA+GGG - chr1.1:1344504-1344523 None:intergenic 35.0%
! TATGTGCCTCCTTTTCATAA+AGG - chr1.1:1344390-1344409 None:intergenic 35.0%
!! ACAAGAGTGCTATATCTAGA+AGG - chr1.1:1344863-1344882 None:intergenic 35.0%
!! GTCTTGATGAGTTGATTATG+TGG + chr1.1:1344606-1344625 MS.gene27283:CDS 35.0%
!! TGTGTTTTAGATGTGTCCAA+CGG + chr1.1:1344336-1344355 MS.gene27283:CDS 35.0%
!!! CGTAGGGTTTTGTTTCATAA+AGG - chr1.1:1344442-1344461 None:intergenic 35.0%
AAAGGAAGAGGATGTTCAGT+TGG - chr1.1:1344818-1344837 None:intergenic 40.0%
AAGAATGGCGATCAAATCCT+TGG + chr1.1:1345187-1345206 MS.gene27283:CDS 40.0%
AAGGAAGAGGATGTTCAGTT+GGG - chr1.1:1344817-1344836 None:intergenic 40.0%
ACATGAGAGAAGAGTTACGT+AGG - chr1.1:1344459-1344478 None:intergenic 40.0%
AGAACCCCACCTTTATGAAA+AGG + chr1.1:1344378-1344397 MS.gene27283:CDS 40.0%
CATGAGAGAAGAGTTACGTA+GGG - chr1.1:1344458-1344477 None:intergenic 40.0%
GAATCATACGGTAGTTGCAA+TGG + chr1.1:1344542-1344561 MS.gene27283:CDS 40.0%
GACTCATGCATGTATGGTTT+CGG + chr1.1:1344683-1344702 MS.gene27283:CDS 40.0%
GTGTCAATGTTTCGTATGTG+TGG + chr1.1:1345157-1345176 MS.gene27283:CDS 40.0%
GTTGATGTTGTTGGGATCAT+CGG - chr1.1:1344711-1344730 None:intergenic 40.0%
TAAGATCATTCCAAGACCGT+TGG - chr1.1:1344355-1344374 None:intergenic 40.0%
TTTGATCGCCATTCTTCCAA+AGG - chr1.1:1345183-1345202 None:intergenic 40.0%
! AAAAGTGCGACAATTGCTGT+TGG - chr1.1:1344513-1344532 None:intergenic 40.0%
! GACAATTGCTGTTGGAAAAG+AGG - chr1.1:1344505-1344524 None:intergenic 40.0%
! GTGGTCTTAGTAAAAGGAAG+AGG - chr1.1:1344830-1344849 None:intergenic 40.0%
! TGCCTCCTTTTCATAAAGGT+GGG - chr1.1:1344386-1344405 None:intergenic 40.0%
! TGGCACAAAAAGTGCAACAT+TGG + chr1.1:1345127-1345146 MS.gene27283:CDS 40.0%
! TGGTGTGTGGTCTTAGTAAA+AGG - chr1.1:1344836-1344855 None:intergenic 40.0%
!! ATTTGGGTGATGGATCAAAG+TGG + chr1.1:1345103-1345122 MS.gene27283:CDS 40.0%
!! TAGAGACTGAGATTTTGGTG+TGG + chr1.1:1344294-1344313 MS.gene27283:CDS 40.0%
AACCAGTTTCACCAACTCAG+AGG + chr1.1:1344968-1344987 MS.gene27283:CDS 45.0%
AATGGCGATCAAATCCTTGG+AGG + chr1.1:1345190-1345209 MS.gene27283:CDS 45.0%
ACCAAGGGAACCTTTGATCT+CGG - chr1.1:1345041-1345060 None:intergenic 45.0%
ACCAGTTTCACCAACTCAGA+GGG + chr1.1:1344969-1344988 MS.gene27283:CDS 45.0%
ACCCAAATGCTCAAGATGAC+GGG - chr1.1:1345091-1345110 None:intergenic 45.0%
ACCCCACCTTTATGAAAAGG+AGG + chr1.1:1344381-1344400 MS.gene27283:CDS 45.0%
AGGAAGAGGATGTTCAGTTG+GGG - chr1.1:1344816-1344835 None:intergenic 45.0%
CAAATCCTTGGAGGAAAGGT+TGG + chr1.1:1345199-1345218 MS.gene27283:CDS 45.0%
CACCCAAATGCTCAAGATGA+CGG - chr1.1:1345092-1345111 None:intergenic 45.0%
CATCTTGAGCATTTGGGTGA+TGG + chr1.1:1345093-1345112 MS.gene27283:CDS 45.0%
CGATCAAATCCTTGGAGGAA+AGG + chr1.1:1345195-1345214 MS.gene27283:CDS 45.0%
CTAGCTAGATAGGTCGACAA+GGG - chr1.1:1345325-1345344 None:intergenic 45.0%
CTTGTCGACCTATCTAGCTA+GGG + chr1.1:1345324-1345343 MS.gene27283:CDS 45.0%
GATTGTGTTGCCGAGATCAA+AGG + chr1.1:1345028-1345047 MS.gene27283:CDS 45.0%
TCCCGTCATCTTGAGCATTT+GGG + chr1.1:1345087-1345106 MS.gene27283:CDS 45.0%
TCTAGAAGGACATTGGTGTG+TGG - chr1.1:1344849-1344868 None:intergenic 45.0%
TCTGTCTCCAAGGTTTGTGT+TGG + chr1.1:1344570-1344589 MS.gene27283:CDS 45.0%
TGTTTCGTATGTGTGGCCTT+TGG + chr1.1:1345164-1345183 MS.gene27283:CDS 45.0%
TTAGATGTGTCCAACGGTCT+TGG + chr1.1:1344342-1344361 MS.gene27283:CDS 45.0%
! AATGGCGTTTTCTGTCTCCA+AGG + chr1.1:1344560-1344579 MS.gene27283:CDS 45.0%
! ATGTGTGGCCTTTGGAAGAA+TGG + chr1.1:1345172-1345191 MS.gene27283:CDS 45.0%
! GCCTCCTTTTCATAAAGGTG+GGG - chr1.1:1344385-1344404 None:intergenic 45.0%
! GTGCCTCCTTTTCATAAAGG+TGG - chr1.1:1344387-1344406 None:intergenic 45.0%
! GTTGGTGAAACTGGTTGTTG+CGG - chr1.1:1344964-1344983 None:intergenic 45.0%
ACATGCATGAGTCGCTGTCA+AGG - chr1.1:1344676-1344695 None:intergenic 50.0%
CCTAGCTAGATAGGTCGACA+AGG - chr1.1:1345326-1345345 None:intergenic 50.0%
CCTTGTCGACCTATCTAGCT+AGG + chr1.1:1345323-1345342 MS.gene27283:CDS 50.0%
CTAGTGTGCCCTAGCTAGAT+AGG - chr1.1:1345335-1345354 None:intergenic 50.0%
CTCCCGTCATCTTGAGCATT+TGG + chr1.1:1345086-1345105 MS.gene27283:CDS 50.0%
GACAGCGACTCATGCATGTA+TGG + chr1.1:1344677-1344696 MS.gene27283:CDS 50.0%
GGTGGACCTCTCTAGTTGTT+GGG - chr1.1:1344634-1344653 None:intergenic 50.0%
GTGGAACCCAACAACTAGAG+AGG + chr1.1:1344625-1344644 MS.gene27283:CDS 50.0%
GTTCTCCAACCTTTCCTCCA+AGG - chr1.1:1345207-1345226 None:intergenic 50.0%
TTCAGTTGGGGTCCAAGAGT+TGG - chr1.1:1344804-1344823 None:intergenic 50.0%
!! GGGTGATGGATCAAAGTGGA+TGG + chr1.1:1345107-1345126 MS.gene27283:CDS 50.0%
CGGTGGACCTCTCTAGTTGT+TGG - chr1.1:1344635-1344654 None:intergenic 55.0%
GCCGAGATCAAAGGTTCCCT+TGG + chr1.1:1345037-1345056 MS.gene27283:CDS 55.0%
GTCGACAAGGGAGCTATGCT+TGG - chr1.1:1345313-1345332 None:intergenic 55.0%
! AGAAGGTTGGCCCTCTGAGT+TGG - chr1.1:1344982-1345001 None:intergenic 55.0%
!! GCCCTCTGAGTTGGTGAAAC+TGG - chr1.1:1344973-1344992 None:intergenic 55.0%
TCGCTGTCAAGGCAGAGCCT+CGG - chr1.1:1344665-1344684 None:intergenic 60.0%
AGAGCCTCGGAGGAACACGG+TGG - chr1.1:1344652-1344671 None:intergenic 65.0%
AGGTCCACCGTGTTCCTCCG+AGG + chr1.1:1344645-1344664 MS.gene27283:CDS 65.0%
CTGTCAAGGCAGAGCCTCGG+AGG - chr1.1:1344662-1344681 None:intergenic 65.0%
GGCAGAGCCTCGGAGGAACA+CGG - chr1.1:1344655-1344674 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 1344275 1345354 1344275 ID=MS.gene27283
chr1.1 mRNA 1344275 1345354 1344275 ID=MS.gene27283.t1;Parent=MS.gene27283
chr1.1 exon 1344275 1345354 1344275 ID=MS.gene27283.t1.exon1;Parent=MS.gene27283.t1
chr1.1 CDS 1344275 1345354 1344275 ID=cds.MS.gene27283.t1;Parent=MS.gene27283.t1
Gene Sequence

>MS.gene27283

ATGAATTTAGGAATAGATTTAGAGACTGAGATTTTGGTGTGGCTTCCTCTAAATTCATTGATGTGTTTTAGATGTGTCCAACGGTCTTGGAATGATCTTACTCAGAACCCCACCTTTATGAAAAGGAGGCACATAAACATGTCTGATAGTCCTAGTCTCATGATCCTTTATGAAACAAAACCCTACGTAACTCTTCTCTCATGTGACACCGTAATACACATCAAATCCCTCTTTTCCAACAGCAATTGTCGCACTTTTATAAGAATGGAATCATACGGTAGTTGCAATGGCGTTTTCTGTCTCCAAGGTTTGTGTTGGTTTCATAAGAGTTGTCTTGATGAGTTGATTATGTGGAACCCAACAACTAGAGAGGTCCACCGTGTTCCTCCGAGGCTCTGCCTTGACAGCGACTCATGCATGTATGGTTTCGGTGCCGATGATCCCAACAACATCAACTTCAAAGTTGTGAAACTCCATACTAGTTATGATGGAATTATGAGATCAGCGGAAGTTTATAATTTAAGTACCAACTCTTGGACCCCAACTGAACATCCTCTTCCTTTTACTAAGACCACACACCAATGTCCTTCTAGATATAGCACTCTTGTTAACAGCGTTTATCATTGGATTATAAGCAGTTCATACGGCAATCGCCATTTTGTTGCAAATATTCTATGCTTTGACTTCCGCAACAACCAGTTTCACCAACTCAGAGGGCCAACCTTCTCATATGATTATAGCAACTTTGCATGGGATTGTGTTGCCGAGATCAAAGGTTCCCTTGGTTATGTTGTGCATTGTAACTTCAATGCTCCCGTCATCTTGAGCATTTGGGTGATGGATCAAAGTGGATGGCACAAAAAGTGCAACATTGGCCCACTTGTGTCAATGTTTCGTATGTGTGGCCTTTGGAAGAATGGCGATCAAATCCTTGGAGGAAAGGTTGGAGAACCGCTCACATCATATGACTATCAAGGTAACTCACTTGACCAATTTCAAATTGATGTTGATTATATTAAACTTCATGAGTATGTGCCAAGCATAGCTCCCTTGTCGACCTATCTAGCTAGGGCACACTAG
Protein sequence

>MS.gene27283.t1

MNLGIDLETEILVWLPLNSLMCFRCVQRSWNDLTQNPTFMKRRHINMSDSPSLMILYETKPYVTLLSCDTVIHIKSLFSNSNCRTFIRMESYGSCNGVFCLQGLCWFHKSCLDELIMWNPTTREVHRVPPRLCLDSDSCMYGFGADDPNNINFKVVKLHTSYDGIMRSAEVYNLSTNSWTPTEHPLPFTKTTHQCPSRYSTLVNSVYHWIISSSYGNRHFVANILCFDFRNNQFHQLRGPTFSYDYSNFAWDCVAEIKGSLGYVVHCNFNAPVILSIWVMDQSGWHKKCNIGPLVSMFRMCGLWKNGDQILGGKVGEPLTSYDYQGNSLDQFQIDVDYIKLHEYVPSIAPLSTYLARAH