AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061240.t1 MTR_4g122850 83.226 155 26 0 1 155 223 377 3.48e-90 269
MS.gene061240.t1 MTR_4g094365 65.278 144 47 3 1 142 222 364 2.74e-55 179
MS.gene061240.t1 MTR_6g060650 63.889 144 44 6 1 141 234 372 4.46e-50 166
MS.gene061240.t1 MTR_3g034180 63.830 141 46 5 3 142 353 489 1.97e-48 164
MS.gene061240.t1 MTR_3g103020 62.500 144 48 5 1 141 237 377 1.95e-45 154
MS.gene061240.t1 MTR_4g117720 62.329 146 45 7 3 141 235 377 3.01e-45 154
MS.gene061240.t1 MTR_8g433040 63.830 141 46 4 3 142 228 364 3.09e-45 153
MS.gene061240.t1 MTR_8g032380 63.830 141 46 4 3 142 228 364 3.09e-45 153
MS.gene061240.t1 MTR_4g116320 60.000 140 50 5 3 139 119 255 4.58e-44 147
MS.gene061240.t1 MTR_4g116330 58.741 143 53 5 3 141 239 379 1.04e-43 150
MS.gene061240.t1 MTR_4g109280 62.069 145 46 7 1 141 219 358 3.38e-43 148
MS.gene061240.t1 MTR_8g433030 62.774 137 45 5 3 137 205 337 4.65e-43 147
MS.gene061240.t1 MTR_4g109270 60.563 142 50 5 3 141 225 363 4.66e-43 148
MS.gene061240.t1 MTR_8g040935 59.722 144 50 6 3 141 67 207 7.10e-43 143
MS.gene061240.t1 MTR_8g032390 62.774 137 45 5 3 137 238 370 1.39e-42 147
MS.gene061240.t1 MTR_1g055175 53.521 142 61 4 2 141 62 200 5.30e-42 140
MS.gene061240.t1 MTR_5g097210 53.642 151 67 3 3 153 227 374 3.86e-41 143
MS.gene061240.t1 MTR_1g055165 53.521 142 61 4 2 141 179 317 1.48e-40 140
MS.gene061240.t1 MTR_4g117870 53.623 138 57 2 5 142 137 267 4.98e-40 137
MS.gene061240.t1 MTR_3g034130 58.268 127 49 4 3 128 239 362 8.12e-39 137
MS.gene061240.t1 MTR_1g055195 52.703 148 64 5 3 148 341 484 1.09e-37 136
MS.gene061240.t1 MTR_4g117770 55.862 145 57 5 3 142 225 367 4.27e-37 132
MS.gene061240.t1 MTR_4g117810 55.862 145 57 5 3 142 225 367 4.27e-37 132
MS.gene061240.t1 MTR_4g117780 55.172 145 58 5 3 142 225 367 7.54e-37 132
MS.gene061240.t1 MTR_3g034160 59.574 141 52 5 3 142 239 375 1.88e-36 130
MS.gene061240.t1 MTR_4g118360 57.895 114 43 4 30 141 15 125 6.52e-35 120
MS.gene061240.t1 MTR_4g117850 57.971 138 49 7 3 135 240 373 1.38e-34 126
MS.gene061240.t1 MTR_4g023380 49.102 167 53 8 3 142 218 379 1.97e-34 125
MS.gene061240.t1 MTR_4g023130 57.042 142 52 7 3 141 177 312 4.48e-34 123
MS.gene061240.t1 MTR_4g023090 50.314 159 55 9 3 142 233 386 5.04e-34 124
MS.gene061240.t1 MTR_4g122860 51.799 139 57 5 20 152 196 330 7.12e-34 123
MS.gene061240.t1 MTR_6g463430 50.694 144 63 5 1 142 65 202 1.98e-33 119
MS.gene061240.t1 MTR_1g055135 49.655 145 65 5 2 141 233 374 1.51e-32 120
MS.gene061240.t1 MTR_4g023080 54.930 142 55 7 3 141 218 353 1.82e-32 120
MS.gene061240.t1 MTR_4g118380 57.600 125 40 6 1 115 236 357 6.33e-32 118
MS.gene061240.t1 MTR_4g118400 54.348 138 45 7 1 136 173 294 1.76e-31 116
MS.gene061240.t1 MTR_4g023190 53.425 146 54 9 3 140 218 357 1.80e-30 114
MS.gene061240.t1 MTR_5g023000 61.538 91 33 2 52 141 9 98 2.04e-30 107
MS.gene061240.t1 MTR_4g023070 48.387 155 59 7 3 141 220 369 2.72e-30 114
MS.gene061240.t1 MTR_4g021785 54.225 142 56 7 3 141 219 354 3.03e-30 114
MS.gene061240.t1 MTR_4g023150 52.740 146 55 9 3 140 219 358 1.09e-29 112
MS.gene061240.t1 MTR_4g118370 48.120 133 65 4 6 138 128 256 3.52e-29 109
MS.gene061240.t1 MTR_4g117750 57.273 110 44 3 33 140 373 481 3.81e-29 113
MS.gene061240.t1 MTR_4g117750 45.270 148 72 4 1 142 215 359 1.33e-24 100
MS.gene061240.t1 MTR_1g055250 43.506 154 82 5 2 155 131 279 5.67e-29 110
MS.gene061240.t1 MTR_4g023200 52.055 146 56 9 3 140 219 358 8.48e-29 110
MS.gene061240.t1 MTR_4g023120 47.436 156 61 7 3 142 220 370 9.00e-29 110
MS.gene061240.t1 MTR_5g070130 48.299 147 68 7 3 144 236 379 7.81e-26 102
MS.gene061240.t1 MTR_5g070080 50.360 139 64 5 1 137 245 380 9.09e-26 102
MS.gene061240.t1 MTR_4g116330 53.097 113 48 4 33 141 229 340 2.98e-25 100
MS.gene061240.t1 MTR_5g070088 47.143 140 69 5 1 137 243 380 4.59e-25 100
MS.gene061240.t1 MTR_7g079450 43.571 140 72 7 3 141 3 136 1.09e-23 91.7
MS.gene061240.t1 MTR_8g102520 42.254 142 75 6 3 141 184 321 1.47e-23 95.9
MS.gene061240.t1 MTR_4g023440 54.639 97 38 4 48 142 240 332 1.42e-22 93.2
MS.gene061240.t1 MTR_7g079400 41.892 148 71 7 3 141 195 336 1.71e-20 87.8
MS.gene061240.t1 MTR_4g117530 51.579 95 39 4 49 141 163 252 7.91e-20 84.7
MS.gene061240.t1 MTR_7g117720 54.945 91 35 3 51 136 182 271 8.64e-19 82.0
MS.gene061240.t1 MTR_8g013005 64.407 59 20 1 83 141 1 58 1.12e-17 73.9
MS.gene061240.t1 MTR_8g098830 43.478 115 58 6 3 115 89 198 2.25e-17 77.4
MS.gene061240.t1 MTR_4g122840 42.336 137 41 6 8 142 164 264 2.66e-17 77.8
MS.gene061240.t1 MTR_7g079370 42.029 138 74 6 1 136 217 350 6.20e-17 78.2
MS.gene061240.t1 MTR_4g121580 44.068 118 49 7 19 132 235 339 3.98e-15 73.2
MS.gene061240.t1 MTR_4g023430 54.217 83 31 4 65 142 142 222 1.99e-14 69.3
MS.gene061240.t1 MTR_4g114700 52.381 84 33 4 55 133 137 218 2.06e-13 67.0
MS.gene061240.t1 MTR_4g109290 66.038 53 17 1 89 141 136 187 7.98e-12 61.6
MS.gene061240.t1 MTR_7g079420 35.461 141 79 8 3 137 1005 1139 2.15e-11 62.8
MS.gene061240.t1 MTR_4g023100 56.897 58 22 2 85 142 65 119 5.19e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGAATTTCTCAGTCTT+TGG 0.205269 8.3:-5971969 MS.gene061240:CDS
TATTGCGGTTTGTGGGTATT+TGG 0.223766 8.3:-5971988 MS.gene061240:CDS
CACTCTTTGTAGAGCATATA+GGG 0.234683 8.3:+5971833 None:intergenic
AATTGTTGCCTTTGATTTGA+TGG 0.277898 8.3:-5972067 MS.gene061240:CDS
ACAAAGAGTGGTGACATTAT+TGG 0.289112 8.3:-5971820 MS.gene061240:CDS
ATTGGAACAGATGGTGGTTC+TGG 0.314767 8.3:-5971802 MS.gene061240:CDS
TGGAGAATTTCTCAGTCTTT+GGG 0.343451 8.3:-5971968 MS.gene061240:CDS
CCACTCTTTGTAGAGCATAT+AGG 0.395958 8.3:+5971832 None:intergenic
AACCGCAATATGTAGTTTGA+TGG 0.396935 8.3:+5972001 None:intergenic
ATTCCAAGTTGCATTCATCT+TGG 0.407888 8.3:-5971903 MS.gene061240:CDS
GGACAAACTCTATCATTTAG+AGG 0.412793 8.3:+5970546 None:intergenic
TCTCAGTCTTTGGGCTATGA+AGG 0.418139 8.3:-5971959 MS.gene061240:CDS
AAACTACATATTGCGGTTTG+TGG 0.437699 8.3:-5971996 MS.gene061240:CDS
CTCTGTATACATAGCCACTT+TGG 0.447885 8.3:+5971708 None:intergenic
TTGATGGAAAGGAAACTGTT+AGG 0.456333 8.3:-5972051 MS.gene061240:CDS
CTCAGTCTTTGGGCTATGAA+GGG 0.456919 8.3:-5971958 MS.gene061240:CDS
AACTACATATTGCGGTTTGT+GGG 0.473166 8.3:-5971995 MS.gene061240:CDS
GACGATGATGGAGGAGAAGA+TGG 0.477751 8.3:-5970583 MS.gene061240:CDS
GAGCATATAGGGGAAAAGTT+AGG 0.478841 8.3:+5971844 None:intergenic
GGATTGGTGAAATATTCTAA+TGG 0.486794 8.3:-5971781 MS.gene061240:CDS
TTTCCTTTCCATCAAATCAA+AGG 0.490696 8.3:+5972059 None:intergenic
TGAATTTGCTCATGGTCACC+AGG 0.491110 8.3:+5971670 None:intergenic
CATCTTTATGAATTTGCTCA+TGG 0.492372 8.3:+5971662 None:intergenic
TCCAACTGAATTGTTATAGT+AGG 0.504691 8.3:+5971732 None:intergenic
GTTTGATGGATAAAATCATC+AGG 0.513173 8.3:+5972015 None:intergenic
CATGATTCAGATGACGATGA+TGG 0.518842 8.3:-5970595 MS.gene061240:CDS
GGCGTAACATATTTCAAATG+TGG 0.531690 8.3:-5971936 MS.gene061240:CDS
TCCTACTATAACAATTCAGT+TGG 0.538812 8.3:-5971733 MS.gene061240:CDS
GAGTCTCTACTTTCACTCCC+TGG 0.547203 8.3:-5971688 MS.gene061240:CDS
GATGAATGTGAGGAAATTGA+AGG 0.547568 8.3:-5970679 MS.gene061240:CDS
GGACTAAGACTCTTGATCTA+CGG 0.550298 8.3:-5971882 MS.gene061240:CDS
ATCCATCAAACTACATATTG+CGG 0.552718 8.3:-5972003 MS.gene061240:CDS
AACAGATGGTGGTTCTGGAT+TGG 0.556410 8.3:-5971797 MS.gene061240:CDS
TCAGTCTTTGGGCTATGAAG+GGG 0.560298 8.3:-5971957 MS.gene061240:CDS
TTGCCTTTGATTTGATGGAA+AGG 0.562152 8.3:-5972062 MS.gene061240:CDS
AGTCCAAGATGAATGCAACT+TGG 0.565089 8.3:+5971900 None:intergenic
TGGATAAAATCATCAGGAAG+AGG 0.569512 8.3:+5972021 None:intergenic
CCTATATGCTCTACAAAGAG+TGG 0.572496 8.3:-5971832 MS.gene061240:CDS
GCGTAACATATTTCAAATGT+GGG 0.575536 8.3:-5971935 MS.gene061240:CDS
CTGAATTGTTATAGTAGGAG+TGG 0.580575 8.3:+5971737 None:intergenic
GGTGACATTATTGGAACAGA+TGG 0.620913 8.3:-5971811 MS.gene061240:CDS
GTAGGAGGAAGATGAATGTG+AGG 0.621010 8.3:-5970689 MS.gene061240:intron
GACATTATTGGAACAGATGG+TGG 0.626070 8.3:-5971808 MS.gene061240:CDS
ATAAAATCATCAGGAAGAGG+AGG 0.640290 8.3:+5972024 None:intergenic
CAATTCAGTTGGATCCAAAG+TGG 0.644141 8.3:-5971722 MS.gene061240:CDS
GATTCAGATGACGATGATGG+AGG 0.644307 8.3:-5970592 MS.gene061240:CDS
ACTCTTTGTAGAGCATATAG+GGG 0.650669 8.3:+5971834 None:intergenic
GAATTTGCTCATGGTCACCA+GGG 0.661249 8.3:+5971671 None:intergenic
CAATGATGATGACAATGAGA+AGG 0.673231 8.3:-5970653 MS.gene061240:CDS
TGATGACAATGAGAAGGCTG+AGG 0.682895 8.3:-5970647 MS.gene061240:CDS
TGACACAAACAAGAAGAACG+AGG 0.756690 8.3:-5971641 MS.gene061240:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAATATAAATAAAA+TGG + chr8.3:5971038-5971057 None:intergenic 0.0%
!! AAAGTATAAAATTCTGTAAT+TGG - chr8.3:5971565-5971584 MS.gene061240:intron 15.0%
!! AAATATAAATAAAATGGTGA+AGG + chr8.3:5971032-5971051 None:intergenic 15.0%
!! AAGTATAAAATTCTGTAATT+GGG - chr8.3:5971566-5971585 MS.gene061240:intron 15.0%
!!! ATATTGTATTTTTATCTCTT+GGG - chr8.3:5971058-5971077 MS.gene061240:intron 15.0%
!!! TATATTGTATTTTTATCTCT+TGG - chr8.3:5971057-5971076 MS.gene061240:intron 15.0%
!! TTAAACATTTCACAACATAT+TGG + chr8.3:5971156-5971175 None:intergenic 20.0%
!! TTAGGAATCAATAGAATAAA+GGG + chr8.3:5971656-5971675 None:intergenic 20.0%
!!! AAATTAGTTTTTTTTCTTCC+TGG + chr8.3:5971322-5971341 None:intergenic 20.0%
!!! TTTTATATGGTAAACTAATC+TGG - chr8.3:5971205-5971224 MS.gene061240:intron 20.0%
! AATTCAAACTATGCCAATAA+AGG + chr8.3:5971731-5971750 None:intergenic 25.0%
! AATTTGTATTATGCAAGTCA+TGG + chr8.3:5971797-5971816 None:intergenic 25.0%
! ACAAACAATTTGTGAAAGAA+AGG + chr8.3:5971926-5971945 None:intergenic 25.0%
! CAAACAATTTGTGAAAGAAA+GGG + chr8.3:5971925-5971944 None:intergenic 25.0%
! GTTAGGAATCAATAGAATAA+AGG + chr8.3:5971657-5971676 None:intergenic 25.0%
! TAGGAATCAATAGAATAAAG+GGG + chr8.3:5971655-5971674 None:intergenic 25.0%
! TTCTTTCACAAATTGTTTGT+AGG - chr8.3:5971926-5971945 MS.gene061240:CDS 25.0%
!! TTAGCTTTCTTCATTGAATT+AGG + chr8.3:5971419-5971438 None:intergenic 25.0%
!!! AAATTTTAGTGGACTCTTAA+CGG - chr8.3:5971269-5971288 MS.gene061240:intron 25.0%
!!! CTGCTTGAAATTGTTTTATA+TGG - chr8.3:5971192-5971211 MS.gene061240:intron 25.0%
!!! GTTTTGTTCTCAAATTTTAG+TGG - chr8.3:5971258-5971277 MS.gene061240:intron 25.0%
ATCCATCAAACTACATATTG+CGG - chr8.3:5970630-5970649 MS.gene061240:CDS 30.0%
GCGTAACATATTTCAAATGT+GGG - chr8.3:5970698-5970717 MS.gene061240:intron 30.0%
GGAAGTAATTGTAACAAGTT+AGG + chr8.3:5971674-5971693 None:intergenic 30.0%
GGTTAATTTATGCATGTTGA+AGG - chr8.3:5971226-5971245 MS.gene061240:intron 30.0%
TCCAACTGAATTGTTATAGT+AGG + chr8.3:5970904-5970923 None:intergenic 30.0%
TCCTACTATAACAATTCAGT+TGG - chr8.3:5970900-5970919 MS.gene061240:intron 30.0%
TGCAAACTTAAGTAGAGAAA+AGG + chr8.3:5971500-5971519 None:intergenic 30.0%
TTTCACAAATTGTTTGTAGG+AGG - chr8.3:5971929-5971948 MS.gene061240:CDS 30.0%
TTTCCTTTCCATCAAATCAA+AGG + chr8.3:5970577-5970596 None:intergenic 30.0%
! AACCTATGTTTGGGTTAATT+TGG - chr8.3:5971605-5971624 MS.gene061240:intron 30.0%
! CATCTTTATGAATTTGCTCA+TGG + chr8.3:5970974-5970993 None:intergenic 30.0%
! GGATTGGTGAAATATTCTAA+TGG - chr8.3:5970852-5970871 MS.gene061240:intron 30.0%
! GTTTGATGGATAAAATCATC+AGG + chr8.3:5970621-5970640 None:intergenic 30.0%
!! AATTGTTGCCTTTGATTTGA+TGG - chr8.3:5970566-5970585 MS.gene061240:CDS 30.0%
!! TTGTATTTTTATCTCTTGGG+TGG - chr8.3:5971061-5971080 MS.gene061240:intron 30.0%
AAACTACATATTGCGGTTTG+TGG - chr8.3:5970637-5970656 MS.gene061240:CDS 35.0%
AACCGCAATATGTAGTTTGA+TGG + chr8.3:5970635-5970654 None:intergenic 35.0%
AACTACATATTGCGGTTTGT+GGG - chr8.3:5970638-5970657 MS.gene061240:CDS 35.0%
AAGGAATGAGTCCACTATAT+CGG + chr8.3:5971712-5971731 None:intergenic 35.0%
ACAAAGAGTGGTGACATTAT+TGG - chr8.3:5970813-5970832 MS.gene061240:intron 35.0%
ACTCTTTGTAGAGCATATAG+GGG + chr8.3:5970802-5970821 None:intergenic 35.0%
ATAAAATCATCAGGAAGAGG+AGG + chr8.3:5970612-5970631 None:intergenic 35.0%
ATTCCAAGTTGCATTCATCT+TGG - chr8.3:5970730-5970749 MS.gene061240:intron 35.0%
CACTCTTTGTAGAGCATATA+GGG + chr8.3:5970803-5970822 None:intergenic 35.0%
CTGAATTGTTATAGTAGGAG+TGG + chr8.3:5970899-5970918 None:intergenic 35.0%
GATGAATGTGAGGAAATTGA+AGG - chr8.3:5971954-5971973 MS.gene061240:CDS 35.0%
GGCGTAACATATTTCAAATG+TGG - chr8.3:5970697-5970716 MS.gene061240:intron 35.0%
GTATTATGCAAGTCATGGTT+TGG + chr8.3:5971792-5971811 None:intergenic 35.0%
TAACCCAAACATAGGTTCAT+GGG + chr8.3:5971602-5971621 None:intergenic 35.0%
TCAGTAAGAAATGCTACTAG+AGG - chr8.3:5971530-5971549 MS.gene061240:intron 35.0%
TCATTTCTCTGTTACAAACC+AGG - chr8.3:5971301-5971320 MS.gene061240:intron 35.0%
TCTTCATTGAATTAGGAGCA+TGG + chr8.3:5971412-5971431 None:intergenic 35.0%
TGCATGTTGAAGGAAAAAGA+AGG - chr8.3:5971236-5971255 MS.gene061240:intron 35.0%
TGCCAAATTAACCCAAACAT+AGG + chr8.3:5971610-5971629 None:intergenic 35.0%
TGGAGAATTTCTCAGTCTTT+GGG - chr8.3:5970665-5970684 MS.gene061240:CDS 35.0%
TGGATAAAATCATCAGGAAG+AGG + chr8.3:5970615-5970634 None:intergenic 35.0%
TTAACCCAAACATAGGTTCA+TGG + chr8.3:5971603-5971622 None:intergenic 35.0%
TTGATGGAAAGGAAACTGTT+AGG - chr8.3:5970582-5970601 MS.gene061240:CDS 35.0%
TTGGAGAATTTCTCAGTCTT+TGG - chr8.3:5970664-5970683 MS.gene061240:CDS 35.0%
! CAATGATGATGACAATGAGA+AGG - chr8.3:5971980-5971999 MS.gene061240:CDS 35.0%
! CTTCATTGAATTAGGAGCAT+GGG + chr8.3:5971411-5971430 None:intergenic 35.0%
! TTCATTGAATTAGGAGCATG+GGG + chr8.3:5971410-5971429 None:intergenic 35.0%
! TTGTCTGACCTCTTTCTTTT+TGG + chr8.3:5972017-5972036 None:intergenic 35.0%
!! TAGTGGACTCATTCCTTTAT+TGG - chr8.3:5971715-5971734 MS.gene061240:CDS 35.0%
!! TTGCCTTTGATTTGATGGAA+AGG - chr8.3:5970571-5970590 MS.gene061240:CDS 35.0%
ACATATTGGATCAGCTTGTG+TGG + chr8.3:5971142-5971161 None:intergenic 40.0%
AGGTTGCACCAAAAAGAAAG+AGG - chr8.3:5972006-5972025 MS.gene061240:CDS 40.0%
AGTCCAAGATGAATGCAACT+TGG + chr8.3:5970736-5970755 None:intergenic 40.0%
CAATTCAGTTGGATCCAAAG+TGG - chr8.3:5970911-5970930 MS.gene061240:intron 40.0%
CATGATTCAGATGACGATGA+TGG - chr8.3:5972038-5972057 MS.gene061240:CDS 40.0%
CCACTCTTTGTAGAGCATAT+AGG + chr8.3:5970804-5970823 None:intergenic 40.0%
CCTATATGCTCTACAAAGAG+TGG - chr8.3:5970801-5970820 MS.gene061240:intron 40.0%
CTCTGTATACATAGCCACTT+TGG + chr8.3:5970928-5970947 None:intergenic 40.0%
GACATTATTGGAACAGATGG+TGG - chr8.3:5970825-5970844 MS.gene061240:intron 40.0%
GAGCATATAGGGGAAAAGTT+AGG + chr8.3:5970792-5970811 None:intergenic 40.0%
GGACTAAGACTCTTGATCTA+CGG - chr8.3:5970751-5970770 MS.gene061240:intron 40.0%
GGTGACATTATTGGAACAGA+TGG - chr8.3:5970822-5970841 MS.gene061240:intron 40.0%
TATTGCGGTTTGTGGGTATT+TGG - chr8.3:5970645-5970664 MS.gene061240:CDS 40.0%
TGACACAAACAAGAAGAACG+AGG - chr8.3:5970992-5971011 MS.gene061240:intron 40.0%
TGACCCATGAACCTATGTTT+GGG - chr8.3:5971596-5971615 MS.gene061240:intron 40.0%
! TATCGGAGTTCTGGTAGAAA+AGG + chr8.3:5971695-5971714 None:intergenic 40.0%
!!! TTTTAGTGGACTCTTAACGG+TGG - chr8.3:5971272-5971291 MS.gene061240:intron 40.0%
AGTCCACTATATCGGAGTTC+TGG + chr8.3:5971704-5971723 None:intergenic 45.0%
CTACCAGAACTCCGATATAG+TGG - chr8.3:5971698-5971717 MS.gene061240:CDS 45.0%
CTCAGTCTTTGGGCTATGAA+GGG - chr8.3:5970675-5970694 MS.gene061240:CDS 45.0%
GTAGGAGGAAGATGAATGTG+AGG - chr8.3:5971944-5971963 MS.gene061240:CDS 45.0%
GTGACCCATGAACCTATGTT+TGG - chr8.3:5971595-5971614 MS.gene061240:intron 45.0%
TCAGTCTTTGGGCTATGAAG+GGG - chr8.3:5970676-5970695 MS.gene061240:CDS 45.0%
TCTCAGTCTTTGGGCTATGA+AGG - chr8.3:5970674-5970693 MS.gene061240:CDS 45.0%
TGATGACAATGAGAAGGCTG+AGG - chr8.3:5971986-5972005 MS.gene061240:CDS 45.0%
! ATTGGAACAGATGGTGGTTC+TGG - chr8.3:5970831-5970850 MS.gene061240:intron 45.0%
! CAAGTCATGGTTTGGAGTTC+TGG + chr8.3:5971784-5971803 None:intergenic 45.0%
! GAATTTGCTCATGGTCACCA+GGG + chr8.3:5970965-5970984 None:intergenic 45.0%
! GATTCAGATGACGATGATGG+AGG - chr8.3:5972041-5972060 MS.gene061240:CDS 45.0%
! TCTTGGGTGGCTGCATTTTA+GGG - chr8.3:5971074-5971093 MS.gene061240:intron 45.0%
! TGAATTTGCTCATGGTCACC+AGG + chr8.3:5970966-5970985 None:intergenic 45.0%
!! AACAGATGGTGGTTCTGGAT+TGG - chr8.3:5970836-5970855 MS.gene061240:intron 45.0%
GAGTCTCTACTTTCACTCCC+TGG - chr8.3:5970945-5970964 MS.gene061240:intron 50.0%
! CTCTTGGGTGGCTGCATTTT+AGG - chr8.3:5971073-5971092 MS.gene061240:intron 50.0%
!! GACGATGATGGAGGAGAAGA+TGG - chr8.3:5972050-5972069 MS.gene061240:CDS 50.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 5970558 5972097 5970558 ID=MS.gene061240
chr8.3 mRNA 5970558 5972097 5970558 ID=MS.gene061240.t1;Parent=MS.gene061240
chr8.3 exon 5971642 5972097 5971642 ID=MS.gene061240.t1.exon1;Parent=MS.gene061240.t1
chr8.3 CDS 5971642 5972097 5971642 ID=cds.MS.gene061240.t1;Parent=MS.gene061240.t1
chr8.3 exon 5970558 5970707 5970558 ID=MS.gene061240.t1.exon2;Parent=MS.gene061240.t1
chr8.3 CDS 5970558 5970707 5970558 ID=cds.MS.gene061240.t1;Parent=MS.gene061240.t1
Gene Sequence

>MS.gene061240

ATGTTTGTAATTGTTGCCTTTGATTTGATGGAAAGGAAACTGTTAGGCATGCCTCCTCTTCCTGATGATTTTATCCATCAAACTACATATTGCGGTTTGTGGGTATTTGGAGAATTTCTCAGTCTTTGGGCTATGAAGGGGCGTAACATATTTCAAATGTGGGTGATGAAAGATTCCAAGTTGCATTCATCTTGGACTAAGACTCTTGATCTACGGATTGATGATGTCATTCCTAACTTTTCCCCTATATGCTCTACAAAGAGTGGTGACATTATTGGAACAGATGGTGGTTCTGGATTGGTGAAATATTCTAATGGTGAAGTACAACTCTTAGACTACCACTCCTACTATAACAATTCAGTTGGATCCAAAGTGGCTATGTATACAGAGTCTCTACTTTCACTCCCTGGTGACCATGAGCAAATTCATAAAGATGACACAAACAAGAAGAACGAGGTTTTGAAATATTCTCCTTCACCATTTTATTTATATTTATAATTATATTGTATTTTTATCTCTTGGGTGGCTGCATTTTAGGGTAATATGTTTTTTAACTTCTTTTTGTAACATAAGCTAGTATGCCACACAAGCTGATCCAATATGTTGTGAAATGTTTAAATGTATGTTGTTGTCACTGCTTGAAATTGTTTTATATGGTAAACTAATCTGGTTAATTTATGCATGTTGAAGGAAAAAGAAGGTTTTGTTCTCAAATTTTAGTGGACTCTTAACGGTGGCATTTGTCATTTCTCTGTTACAAACCAGGAAGAAAAAAAACTAATTTCAATTTAATGAGCAATGCTTGAATTTATAAGACTTTAGATCAGTAGAAACATCAACATTAAATCACCCCATGCTCCTAATTCAATGAAGAAAGCTAAGAAAAACAAGAGAGATTTTTTGTTAAAATGTATGTAACACATCAACATGTCTTGATGTCCTTTTCTCTACTTAAGTTTGCAAAGTTACATATCAGTAAGAAATGCTACTAGAGGTTTCATTCTTTTAAAGTATAAAATTCTGTAATTGGGTGTATAGTGACCCATGAACCTATGTTTGGGTTAATTTGGCAGCTATCATTTTTATTTTTTTCACCCCTTTATTCTATTGATTCCTAACTTGTTACAATTACTTCCTTTTCTACCAGAACTCCGATATAGTGGACTCATTCCTTTATTGGCATAGTTTGAATTACTTATACTTTGAAAGTTAAAGTTTTGCTACCAGAACTCCAAACCATGACTTGCATAATACAAATTTTAGTCTTTTGCATCAATTTTGCTGCTTAAACTTATATTATCAATCTAATGTAAATTTGTAATATGTAATTCAATTTTTCTGTATGACTTGTTGCATATGAGTCACCCTTTCTTTCACAAATTGTTTGTAGGAGGAAGATGAATGTGAGGAAATTGAAGGCGACAATGATGATGACAATGAGAAGGCTGAGGTTGCACCAAAAAGAAAGAGGTCAGACAAACATGATTCAGATGACGATGATGGAGGAGAAGATGGCGTAAGAGTAAGATCCTCTAAATGA
Protein sequence

>MS.gene061240.t1

MFVIVAFDLMERKLLGMPPLPDDFIHQTTYCGLWVFGEFLSLWAMKGRNIFQMWVMKDSKLHSSWTKTLDLRIDDVIPNFSPICSTKSGDIIGTDGGSGLVKYSNGEVQLLDYHSYYNNSVGSKVAMYTESLLSLPGDHEQIHKDDTNKKNEEEDECEEIEGDNDDDNEKAEVAPKRKRSDKHDSDDDDGGEDGVRVRSSK