AlfalfaGEDB | MS.gene57528

M. sativa cultivar XinJiangDaYe / MS.gene57528

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57528.t1	RHN40013.1	64.1	198	41	4	29	196	194	391	1.60E-57	232.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57528.t1	G7LCP4	64.1	198	41	4	29	196	173	370	1.1e-57	232.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene57528	MS.gene58240	PPI
MS.gene40902	MS.gene57528	PPI
MS.gene57528	MS.gene24826	PPI
MS.gene57528	MS.gene063472	PPI
MS.gene57528	MS.gene43790	PPI
MS.gene57528	MS.gene034680	PPI
MS.gene57528	MS.gene27021	PPI
MS.gene27020	MS.gene57528	PPI
MS.gene57528	MS.gene044563	PPI
MS.gene066620	MS.gene57528	PPI
MS.gene035236	MS.gene57528	PPI
MS.gene57528	MS.gene50327	PPI
MS.gene57528	MS.gene066626	PPI
MS.gene57528	MS.gene40982	PPI
MS.gene57528	MS.gene063474	PPI
MS.gene51208	MS.gene57528	PPI
MS.gene57528	MS.gene88416	PPI
MS.gene57528	MS.gene57530	PPI
MS.gene011106	MS.gene57528	PPI
MS.gene62398	MS.gene57528	PPI
MS.gene60027	MS.gene57528	PPI
MS.gene57528	MS.gene57532	PPI
MS.gene57528	MS.gene003076	PPI
MS.gene045475	MS.gene57528	PPI
MS.gene88776	MS.gene57528	PPI
MS.gene35068	MS.gene57528	PPI
MS.gene041390	MS.gene57528	PPI
MS.gene90744	MS.gene57528	PPI
MS.gene92376	MS.gene57528	PPI
MS.gene57528	MS.gene009892	PPI
MS.gene57528	MS.gene26101	PPI
MS.gene000035	MS.gene57528	PPI
MS.gene50329	MS.gene57528	PPI
MS.gene57528	MS.gene061241	PPI
MS.gene31637	MS.gene57528	PPI
MS.gene87573	MS.gene57528	PPI
MS.gene57528	MS.gene51192	PPI
MS.gene57528	MS.gene51188	PPI
MS.gene57537	MS.gene57528	PPI
MS.gene57528	MS.gene033875	PPI
MS.gene019504	MS.gene57528	PPI
MS.gene059156	MS.gene57528	PPI
MS.gene57528	MS.gene041489	PPI
MS.gene57528	MS.gene38220	PPI
MS.gene57528	MS.gene40986	PPI
MS.gene57528	MS.gene36704	PPI
MS.gene57528	MS.gene041394	PPI
MS.gene57528	MS.gene034688	PPI
MS.gene82082	MS.gene57528	PPI
MS.gene57528	MS.gene03060	PPI
MS.gene57528	MS.gene24213	PPI
MS.gene57528	MS.gene033440	PPI
MS.gene57528	MS.gene31637	PPI
MS.gene57528	MS.gene024011	PPI
MS.gene033444	MS.gene57528	PPI
MS.gene50306	MS.gene57528	PPI
MS.gene57528	MS.gene58241	PPI
MS.gene57528	MS.gene064109	PPI
MS.gene57528	MS.gene058696	PPI
MS.gene57528	MS.gene035238	PPI
MS.gene57528	MS.gene85043	PPI
MS.gene26949	MS.gene57528	PPI
MS.gene57528	MS.gene064114	PPI
MS.gene57528	MS.gene062698	PPI
MS.gene87200	MS.gene57528	PPI
MS.gene58311	MS.gene57528	PPI
MS.gene57528	MS.gene80610	PPI
MS.gene033432	MS.gene57528	PPI
MS.gene59639	MS.gene57528	PPI
MS.gene57528	MS.gene40886	PPI
MS.gene066635	MS.gene57528	PPI
MS.gene57528	MS.gene041391	PPI
MS.gene57528	MS.gene033443	PPI
MS.gene010758	MS.gene57528	PPI
MS.gene87586	MS.gene57528	PPI
MS.gene50326	MS.gene57528	PPI
MS.gene57528	MS.gene021553	PPI
MS.gene57528	MS.gene045474	PPI
MS.gene57528	MS.gene44887	PPI
MS.gene57528	MS.gene058701	PPI
MS.gene57528	MS.gene036558	PPI
MS.gene57528	MS.gene87554	PPI
MS.gene57528	MS.gene009891	PPI
MS.gene57528	MS.gene27051	PPI
MS.gene57528	MS.gene048193	PPI
MS.gene57528	MS.gene024420	PPI
MS.gene57528	MS.gene016220	PPI
MS.gene57528	MS.gene57533	PPI
MS.gene57528	MS.gene024008	PPI
MS.gene57528	MS.gene50337	PPI
MS.gene57528	MS.gene063670	PPI
MS.gene42452	MS.gene57528	PPI
MS.gene57528	MS.gene54541	PPI
MS.gene57528	MS.gene041393	PPI
MS.gene063414	MS.gene57528	PPI
MS.gene57528	MS.gene060368	PPI
MS.gene57528	MS.gene053299	PPI
MS.gene57528	MS.gene28758	PPI
MS.gene57528	MS.gene044429	PPI
MS.gene57528	MS.gene57531	PPI
MS.gene87563	MS.gene57528	PPI
MS.gene57526	MS.gene57528	PPI
MS.gene57528	MS.gene27284	PPI
MS.gene57528	MS.gene019503	PPI
MS.gene57528	MS.gene57717	PPI
MS.gene021553	MS.gene57528	PPI
MS.gene051820	MS.gene57528	PPI
MS.gene26957	MS.gene57528	PPI
MS.gene97996	MS.gene57528	PPI
MS.gene57528	MS.gene48221	PPI
MS.gene036582	MS.gene57528	PPI
MS.gene27021	MS.gene57528	PPI
MS.gene58320	MS.gene57528	PPI
MS.gene26101	MS.gene57528	PPI
MS.gene27283	MS.gene57528	PPI
MS.gene57528	MS.gene51190	PPI
MS.gene58781	MS.gene57528	PPI
MS.gene57528	MS.gene58319	PPI
MS.gene57528	MS.gene71159	PPI
MS.gene42444	MS.gene57528	PPI
MS.gene57528	MS.gene59943	PPI
MS.gene57528	MS.gene044426	PPI
MS.gene57528	MS.gene034681	PPI
MS.gene44886	MS.gene57528	PPI
MS.gene87562	MS.gene57528	PPI
MS.gene57528	MS.gene033442	PPI
MS.gene40904	MS.gene57528	PPI
MS.gene87569	MS.gene57528	PPI
MS.gene57528	MS.gene44428	PPI
MS.gene57528	MS.gene058669	PPI
MS.gene57528	MS.gene066120	PPI
MS.gene041491	MS.gene57528	PPI
MS.gene57528	MS.gene50336	PPI
MS.gene57528	MS.gene035235	PPI
MS.gene059096	MS.gene57528	PPI
MS.gene57528	MS.gene024000	PPI
MS.gene57528	MS.gene012215	PPI
MS.gene006711	MS.gene57528	PPI
MS.gene58716	MS.gene57528	PPI
MS.gene019505	MS.gene57528	PPI
MS.gene57528	MS.gene033079	PPI
MS.gene045476	MS.gene57528	PPI
MS.gene57528	MS.gene034677	PPI
MS.gene58785	MS.gene57528	PPI
MS.gene57528	MS.gene055694	PPI
MS.gene57528	MS.gene059101	PPI
MS.gene50307	MS.gene57528	PPI
MS.gene034690	MS.gene57528	PPI
MS.gene57528	MS.gene58316	PPI
MS.gene57528	MS.gene033430	PPI
MS.gene57528	MS.gene87584	PPI
MS.gene57528	MS.gene58321	PPI
MS.gene036760	MS.gene57528	PPI
MS.gene77857	MS.gene57528	PPI
MS.gene57528	MS.gene87564	PPI
MS.gene57528	MS.gene58315	PPI
MS.gene57527	MS.gene57528	PPI
MS.gene51191	MS.gene57528	PPI
MS.gene57528	MS.gene90743	PPI
MS.gene033426	MS.gene57528	PPI
MS.gene50298	MS.gene57528	PPI
MS.gene57528	MS.gene50311	PPI
MS.gene67687	MS.gene57528	PPI
MS.gene57528	MS.gene85454	PPI
MS.gene57528	MS.gene064112	PPI
MS.gene57528	MS.gene036556	PPI
MS.gene57528	MS.gene57538	PPI
MS.gene57528	MS.gene060367	PPI
MS.gene57528	MS.gene058693	PPI
MS.gene57528	MS.gene27319	PPI
MS.gene57528	MS.gene041395	PPI
MS.gene57528	MS.gene57536	PPI
MS.gene71159	MS.gene57528	PPI
MS.gene019506	MS.gene57528	PPI
MS.gene57528	MS.gene51200	PPI
MS.gene058692	MS.gene57528	PPI
MS.gene57528	MS.gene046958	PPI
MS.gene69309	MS.gene57528	PPI
MS.gene57528	MS.gene24286	PPI
MS.gene57528	MS.gene064083	PPI
MS.gene63658	MS.gene57528	PPI
MS.gene033081	MS.gene57528	PPI
MS.gene57528	MS.gene58783	PPI
MS.gene034686	MS.gene57528	PPI
MS.gene57528	MS.gene40988	PPI
MS.gene070461	MS.gene57528	PPI
MS.gene57528	MS.gene39265	PPI
MS.gene57528	MS.gene24173	PPI
MS.gene57528	MS.gene036584	PPI
MS.gene57528	MS.gene036662	PPI
MS.gene57528	MS.gene42451	PPI
MS.gene87559	MS.gene57528	PPI
MS.gene57528	MS.gene50304	PPI
MS.gene57528	MS.gene035261	PPI
MS.gene57528	MS.gene023999	PPI
MS.gene57528	MS.gene69307	PPI
MS.gene041475	MS.gene57528	PPI
MS.gene81242	MS.gene57528	PPI
MS.gene57528	MS.gene036581	PPI
MS.gene57528	MS.gene019507	PPI
MS.gene57528	MS.gene033431	PPI
MS.gene64203	MS.gene57528	PPI
MS.gene57528	MS.gene034762	PPI
MS.gene57528	MS.gene50320	PPI
MS.gene51202	MS.gene57528	PPI
MS.gene57528	MS.gene58314	PPI
MS.gene57528	MS.gene87557	PPI
MS.gene57528	MS.gene035263	PPI
MS.gene57528	MS.gene67501	PPI
MS.gene57528	MS.gene96406	PPI
MS.gene57528	MS.gene27285	PPI
MS.gene57528	MS.gene035262	PPI
MS.gene064111	MS.gene57528	PPI
MS.gene57528	MS.gene028390	PPI
MS.gene26829	MS.gene57528	PPI
MS.gene064104	MS.gene57528	PPI
MS.gene57528	MS.gene40878	PPI
MS.gene053256	MS.gene57528	PPI
MS.gene57528	MS.gene96407	PPI
MS.gene75875	MS.gene57528	PPI
MS.gene54049	MS.gene57528	PPI
MS.gene57528	MS.gene058703	PPI
MS.gene43789	MS.gene57528	PPI
MS.gene57533	MS.gene57528	PPI
MS.gene57528	MS.gene047279	PPI
MS.gene57528	MS.gene060370	PPI
MS.gene57528	MS.gene50305	PPI
MS.gene57528	MS.gene024002	PPI
MS.gene57528	MS.gene032969	PPI
MS.gene072177	MS.gene57528	PPI
MS.gene58722	MS.gene57528	PPI
MS.gene064091	MS.gene57528	PPI
MS.gene57528	MS.gene68890	PPI
MS.gene57528	MS.gene50297	PPI
MS.gene57528	MS.gene42445	PPI
MS.gene57528	MS.gene86273	PPI
MS.gene43796	MS.gene57528	PPI
MS.gene57528	MS.gene26830	PPI
MS.gene57528	MS.gene40985	PPI
MS.gene57528	MS.gene22715	PPI
MS.gene57528	MS.gene038756	PPI
MS.gene58312	MS.gene57528	PPI
MS.gene36704	MS.gene57528	PPI
MS.gene57528	MS.gene51207	PPI
MS.gene57528	MS.gene63657	PPI
MS.gene57528	MS.gene36595	PPI
MS.gene57528	MS.gene024004	PPI
MS.gene57528	MS.gene045140	PPI
MS.gene57528	MS.gene070462	PPI
MS.gene58313	MS.gene57528	PPI
MS.gene57528	MS.gene061240	PPI
MS.gene57528	MS.gene54049	PPI
MS.gene066622	MS.gene57528	PPI
MS.gene44887	MS.gene57528	PPI
MS.gene57528	MS.gene041473	PPI
MS.gene63655	MS.gene57528	PPI
MS.gene44883	MS.gene57528	PPI
MS.gene57528	MS.gene064086	PPI
MS.gene57528	MS.gene035234	PPI
MS.gene57528	MS.gene058989	PPI
MS.gene036583	MS.gene57528	PPI
MS.gene88780	MS.gene57528	PPI
MS.gene41046	MS.gene57528	PPI
MS.gene57528	MS.gene041468	PPI
MS.gene87588	MS.gene57528	PPI
MS.gene017412	MS.gene57528	PPI
MS.gene57528	MS.gene015089	PPI
MS.gene57528	MS.gene066639	PPI
MS.gene57528	MS.gene42447	PPI
MS.gene96448	MS.gene57528	PPI
MS.gene57528	MS.gene51189	PPI
MS.gene009883	MS.gene57528	PPI
MS.gene57528	MS.gene64203	PPI
MS.gene041392	MS.gene57528	PPI
MS.gene069075	MS.gene57528	PPI
MS.gene033427	MS.gene57528	PPI
MS.gene57528	MS.gene044425	PPI
MS.gene57528	MS.gene032970	PPI
MS.gene031591	MS.gene57528	PPI
MS.gene041474	MS.gene57528	PPI
MS.gene57528	MS.gene59637	PPI
MS.gene041388	MS.gene57528	PPI
MS.gene96126	MS.gene57528	PPI
MS.gene019503	MS.gene57528	PPI
MS.gene57528	MS.gene27022	PPI
MS.gene016524	MS.gene57528	PPI
MS.gene50304	MS.gene57528	PPI
MS.gene57528	MS.gene87585	PPI
MS.gene57528	MS.gene024009	PPI
MS.gene57528	MS.gene036599	PPI
MS.gene57528	MS.gene40887	PPI
MS.gene51204	MS.gene57528	PPI
MS.gene57528	MS.gene42444	PPI
MS.gene31587	MS.gene57528	PPI
MS.gene036557	MS.gene57528	PPI
MS.gene041393	MS.gene57528	PPI
MS.gene033441	MS.gene57528	PPI
MS.gene57528	MS.gene006705	PPI
MS.gene063670	MS.gene57528	PPI
MS.gene57528	MS.gene035237	PPI
MS.gene063826	MS.gene57528	PPI
MS.gene57528	MS.gene000036	PPI
MS.gene84698	MS.gene57528	PPI
MS.gene57528	MS.gene50309	PPI
MS.gene44892	MS.gene57528	PPI
MS.gene57528	MS.gene51199	PPI
MS.gene58239	MS.gene57528	PPI
MS.gene066641	MS.gene57528	PPI
MS.gene57528	MS.gene036664	PPI
MS.gene57528	MS.gene053257	PPI
MS.gene000038	MS.gene57528	PPI
MS.gene57531	MS.gene57528	PPI
MS.gene57528	MS.gene77858	PPI
MS.gene57528	MS.gene51201	PPI
MS.gene57528	MS.gene009893	PPI
MS.gene57528	MS.gene045475	PPI
MS.gene39262	MS.gene57528	PPI
MS.gene57528	MS.gene57526	PPI
MS.gene57535	MS.gene57528	PPI
MS.gene025887	MS.gene57528	PPI
MS.gene57528	MS.gene77704	PPI
MS.gene041470	MS.gene57528	PPI
MS.gene058694	MS.gene57528	PPI
MS.gene57528	MS.gene033083	PPI
MS.gene015089	MS.gene57528	PPI
MS.gene006710	MS.gene57528	PPI
MS.gene44885	MS.gene57528	PPI
MS.gene011679	MS.gene57528	PPI
MS.gene57528	MS.gene033081	PPI
MS.gene57528	MS.gene036663	PPI
MS.gene64001	MS.gene57528	PPI
MS.gene57528	MS.gene68580	PPI
MS.gene57528	MS.gene57525	PPI
MS.gene032970	MS.gene57528	PPI
MS.gene57528	MS.gene059157	PPI
MS.gene57528	MS.gene023996	PPI
MS.gene57528	MS.gene030114	PPI
MS.gene77856	MS.gene57528	PPI
MS.gene57528	MS.gene045473	PPI
MS.gene57528	MS.gene50301	PPI
MS.gene57528	MS.gene88774	PPI
MS.gene50339	MS.gene57528	PPI
MS.gene57528	MS.gene031590	PPI
MS.gene060366	MS.gene57528	PPI
MS.gene57528	MS.gene40984	PPI
MS.gene57528	MS.gene066623	PPI
MS.gene57528	MS.gene064108	PPI
MS.gene57528	MS.gene064090	PPI
MS.gene57528	MS.gene24208	PPI
MS.gene57528	MS.gene58317	PPI
MS.gene57529	MS.gene57528	PPI
MS.gene57528	MS.gene90742	PPI
MS.gene80884	MS.gene57528	PPI
MS.gene57528	MS.gene24212	PPI
MS.gene57528	MS.gene50332	PPI
MS.gene57528	MS.gene024979	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57528.t1	MTR_8g433030	64.141	198	41	4	29	196	140	337	2.32e-75	230
MS.gene57528.t1	MTR_8g032390	64.141	198	41	4	29	196	173	370	4.79e-75	230
MS.gene57528.t1	MTR_8g433040	58.824	204	42	4	29	201	172	364	4.25e-68	212
MS.gene57528.t1	MTR_8g032380	58.824	204	42	4	29	201	172	364	4.25e-68	212
MS.gene57528.t1	MTR_4g094365	50.249	201	66	6	34	201	165	364	3.32e-51	169
MS.gene57528.t1	MTR_6g060650	45.771	201	79	4	29	200	173	372	5.07e-48	161
MS.gene57528.t1	MTR_4g109280	48.454	194	66	7	40	201	168	359	1.43e-46	157
MS.gene57528.t1	MTR_4g117720	47.291	203	72	5	34	201	176	378	1.66e-45	154
MS.gene57528.t1	MTR_3g103020	46.429	196	70	5	40	201	184	378	4.10e-45	153
MS.gene57528.t1	MTR_4g122850	46.860	207	75	8	29	201	159	364	5.89e-43	148
MS.gene57528.t1	MTR_8g040935	44.231	208	81	5	29	201	1	208	5.33e-41	138
MS.gene57528.t1	MTR_4g023130	40.639	219	99	6	11	200	96	312	1.95e-40	140
MS.gene57528.t1	MTR_4g116330	44.560	193	73	4	42	201	189	380	4.05e-40	140
MS.gene57528.t1	MTR_6g463430	45.833	192	69	7	41	201	15	202	4.46e-40	135
MS.gene57528.t1	MTR_4g116320	43.523	193	77	3	36	197	63	254	5.08e-40	137
MS.gene57528.t1	MTR_4g023080	39.726	219	101	6	11	200	137	353	3.72e-39	137
MS.gene57528.t1	MTR_4g118400	48.555	173	71	5	39	194	122	293	3.82e-39	136
MS.gene57528.t1	MTR_4g023070	43.350	203	71	7	40	200	169	369	3.51e-37	132
MS.gene57528.t1	MTR_4g118380	46.821	173	53	5	39	174	185	355	7.40e-37	131
MS.gene57528.t1	MTR_5g097210	44.724	199	74	8	33	198	165	360	2.05e-36	130
MS.gene57528.t1	MTR_1g055175	41.451	193	78	6	42	200	9	200	3.81e-36	125
MS.gene57528.t1	MTR_4g021785	42.188	192	81	5	38	200	164	354	1.24e-35	128
MS.gene57528.t1	MTR_4g023200	39.524	210	92	6	23	199	151	358	3.18e-35	127
MS.gene57528.t1	MTR_4g023120	41.667	204	75	6	40	201	169	370	5.23e-35	127
MS.gene57528.t1	MTR_3g034180	41.872	203	78	7	36	201	290	489	5.68e-35	129
MS.gene57528.t1	MTR_4g023090	40.191	209	78	7	38	201	180	386	8.45e-35	127
MS.gene57528.t1	MTR_4g023190	43.590	195	74	6	38	199	166	357	1.12e-34	125
MS.gene57528.t1	MTR_4g109270	43.147	197	74	6	40	201	171	364	1.20e-34	125
MS.gene57528.t1	MTR_3g034130	41.270	189	76	5	19	173	159	346	2.86e-34	125
MS.gene57528.t1	MTR_4g023150	39.111	225	100	7	9	199	137	358	8.11e-33	121
MS.gene57528.t1	MTR_5g070080	40.741	216	89	8	19	201	177	386	1.62e-32	120
MS.gene57528.t1	MTR_1g055195	41.053	190	74	7	42	194	283	471	2.96e-32	121
MS.gene57528.t1	MTR_3g034160	42.009	219	87	8	19	200	159	374	4.16e-32	119
MS.gene57528.t1	MTR_1g055135	41.500	200	75	6	40	200	178	374	1.04e-31	118
MS.gene57528.t1	MTR_4g117850	41.579	190	76	5	40	194	184	373	1.60e-31	117
MS.gene57528.t1	MTR_4g117530	41.317	167	83	5	41	201	96	253	1.86e-31	115
MS.gene57528.t1	MTR_4g117780	40.404	198	82	6	39	201	171	367	2.77e-31	117
MS.gene57528.t1	MTR_4g023440	43.030	165	80	5	39	201	180	332	3.92e-30	113
MS.gene57528.t1	MTR_4g023380	37.089	213	79	6	42	201	169	379	6.59e-30	113
MS.gene57528.t1	MTR_4g116330	42.515	167	75	5	42	201	189	341	1.31e-29	112
MS.gene57528.t1	MTR_4g118370	39.151	212	76	7	19	198	67	257	2.07e-29	109
MS.gene57528.t1	MTR_5g070130	40.686	204	77	9	40	201	176	377	2.07e-29	112
MS.gene57528.t1	MTR_4g117770	40.404	198	82	6	39	201	171	367	2.52e-29	112
MS.gene57528.t1	MTR_4g117810	40.404	198	82	6	39	201	171	367	2.52e-29	112
MS.gene57528.t1	MTR_7g079400	38.725	204	86	6	36	201	135	337	4.67e-29	110
MS.gene57528.t1	MTR_1g055165	40.719	167	68	4	64	200	152	317	1.38e-28	108
MS.gene57528.t1	MTR_7g079370	41.053	190	70	7	42	194	165	349	2.48e-28	109
MS.gene57528.t1	MTR_5g070088	39.409	203	88	7	33	201	185	386	1.91e-26	104
MS.gene57528.t1	MTR_8g102520	36.816	201	92	5	35	201	123	322	2.02e-26	103
MS.gene57528.t1	MTR_1g055250	36.364	209	94	6	29	201	65	270	6.06e-26	102
MS.gene57528.t1	MTR_4g121580	36.126	191	70	7	29	191	173	339	2.38e-23	96.3
MS.gene57528.t1	MTR_4g117750	36.667	210	90	6	31	200	152	358	7.38e-23	95.5
MS.gene57528.t1	MTR_4g117750	51.899	79	34	2	125	199	403	481	1.23e-14	72.0
MS.gene57528.t1	MTR_8g013010	53.933	89	36	2	29	117	212	295	7.92e-22	90.9
MS.gene57528.t1	MTR_8g098830	37.209	172	71	7	37	175	30	197	1.28e-20	86.3
MS.gene57528.t1	MTR_4g117870	34.158	202	115	6	9	201	75	267	1.83e-20	86.7
MS.gene57528.t1	MTR_5g023000	50.505	99	39	4	112	201	2	99	7.15e-20	80.9
MS.gene57528.t1	MTR_4g114700	36.747	166	74	6	36	192	75	218	1.68e-17	78.2
MS.gene57528.t1	MTR_2g048580	33.168	202	84	10	38	201	154	342	3.57e-17	78.6
MS.gene57528.t1	MTR_4g023430	51.852	81	32	2	128	201	142	222	3.68e-17	77.0
MS.gene57528.t1	MTR_7g079450	37.956	137	59	3	91	201	1	137	3.74e-17	74.7
MS.gene57528.t1	MTR_4g117430	54.667	75	30	3	40	113	63	134	1.43e-16	73.6
MS.gene57528.t1	MTR_4g118360	42.857	105	47	2	100	200	30	125	8.68e-16	70.9
MS.gene57528.t1	MTR_6g034720	47.368	76	39	1	34	109	96	170	4.67e-14	68.6
MS.gene57528.t1	MTR_4g116340	54.545	55	25	0	29	83	180	234	3.15e-12	63.9
MS.gene57528.t1	MTR_4g023100	54.545	55	25	0	147	201	65	119	2.48e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 40 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATGATCCTGTGTATTA+TGG	0.220847	8.3:-62043308	MS.gene57528:intron
TATTGTTGTCTTTGATTTGA+TGG	0.278303	8.3:-62043369	MS.gene57528:CDS
TATTGTCAAATAACAGCTTC+TGG	0.284419	8.3:+62044262	None:intergenic
TTGACAATAATCGTTCAATA+AGG	0.310939	8.3:-62044248	MS.gene57528:CDS
ATGGCCCCTTCAAATGCATT+TGG	0.362214	8.3:+62043027	None:intergenic
CCTTTGTATGATTATGCATA+AGG	0.375544	8.3:+62044214	None:intergenic
AAGCAGGATCATTCTTTAAC+GGG	0.385005	8.3:-62043439	MS.gene57528:CDS
AAGTCTCTTGTAATTCCTAT+TGG	0.389931	8.3:-62043174	MS.gene57528:CDS
TCTTTAACGGGGCTATTCAT+TGG	0.413675	8.3:-62043427	MS.gene57528:CDS
GGATCATGGTTAAAATCATC+TGG	0.423934	8.3:+62043320	None:intergenic
AAGTCAAGCTCATCACCAAT+AGG	0.451259	8.3:+62043159	None:intergenic
ATGAATCCAAATGCATTTGA+AGG	0.466940	8.3:-62043033	MS.gene57528:CDS
TTGGTGAAGTATAATAATAA+AGG	0.488795	8.3:-62043078	MS.gene57528:CDS
AAAGCAGGATCATTCTTTAA+CGG	0.489952	8.3:-62043440	MS.gene57528:CDS
GAGTCTCTGATTTCACTCTC+TGG	0.490971	8.3:-62042997	MS.gene57528:CDS
CATCACTTATTTGAATGCCA+TGG	0.500547	8.3:-62043471	MS.gene57528:CDS
GAATACAACAACATTCGTCT+TGG	0.515048	8.3:-62043200	MS.gene57528:CDS
AACTGATGGTGGTCGTGGAT+TGG	0.526792	8.3:-62043097	MS.gene57528:CDS
AGACAAAACTTCATCACAGT+TGG	0.532902	8.3:-62043543	MS.gene57528:CDS
GTTGGAACTGATGGTGGTCG+TGG	0.543560	8.3:-62043102	MS.gene57528:CDS
GCCATGGCTTATCACAAAGC+AGG	0.545994	8.3:-62043455	MS.gene57528:CDS
AACCATAATACACAGGATCA+TGG	0.548106	8.3:+62043306	None:intergenic
TTGTCTTTGATTTGATGGAA+AGG	0.551425	8.3:-62043364	MS.gene57528:CDS
AACAAGTGGAATGAAATTGA+AGG	0.553331	8.3:-62043500	MS.gene57528:CDS
AATCAGAGACTCTGTATACA+TGG	0.566712	8.3:+62043008	None:intergenic
TGAATCCAAATGCATTTGAA+GGG	0.573346	8.3:-62043032	MS.gene57528:CDS
TCTCTTTGAGAGATAACAAG+TGG	0.576866	8.3:-62043514	MS.gene57528:CDS
TTTGTCTAAGGTTGGACGAG+AGG	0.578839	8.3:+62043559	None:intergenic
GGTGATATTGTTGGAACTGA+TGG	0.579963	8.3:-62043111	MS.gene57528:CDS
TGGTTAAAATCATCTGGAAG+AGG	0.581544	8.3:+62043326	None:intergenic
ATGCATAATCATACAAAGGA+CGG	0.615240	8.3:-62044210	MS.gene57528:intron
TATCTTGTTAAACTTGCTCA+CGG	0.621078	8.3:+62042971	None:intergenic
GAATCCAAATGCATTTGAAG+GGG	0.629043	8.3:-62043031	MS.gene57528:CDS
CCTTATGCATAATCATACAA+AGG	0.639530	8.3:-62044214	MS.gene57528:CDS
GATATTGTTGGAACTGATGG+TGG	0.641384	8.3:-62043108	MS.gene57528:CDS
ACCCACAAACCATAATACAC+AGG	0.646047	8.3:+62043299	None:intergenic
TCCTGCTTTGTGATAAGCCA+TGG	0.648508	8.3:+62043454	None:intergenic
TCGTTATTATAATATACGAG+TGG	0.648718	8.3:-62043396	MS.gene57528:CDS
AGCAGGATCATTCTTTAACG+GGG	0.666248	8.3:-62043438	MS.gene57528:CDS
GCATTCAAATAAGTGATGTG+AGG	0.681991	8.3:+62043476	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GATTTTTTTTATGAAATAAT+AGG	-	chr8.3:62043484-62043503	MS.gene57528:CDS	10.0%
!!	ATAATATATAAGGATATCAT+TGG	+	chr8.3:62043107-62043126	None:intergenic	15.0%
!!	TTGGTGAAGTATAATAATAA+AGG	-	chr8.3:62044173-62044192	MS.gene57528:intron	20.0%
!!	TTTCATAAAAAAAATCACGT+CGG	+	chr8.3:62043480-62043499	None:intergenic	20.0%
!	AACCATATAGATGATATTCA+TGG	+	chr8.3:62043627-62043646	None:intergenic	25.0%
!	TCGTTATTATAATATACGAG+TGG	-	chr8.3:62043855-62043874	MS.gene57528:intron	25.0%
!	TTACTCAGGCATAATATATA+AGG	+	chr8.3:62043117-62043136	None:intergenic	25.0%
!	TTCATAAAAAAAATCACGTC+GGG	+	chr8.3:62043479-62043498	None:intergenic	25.0%
!	TTGACAATAATCGTTCAATA+AGG	-	chr8.3:62043003-62043022	MS.gene57528:CDS	25.0%
!!	GAATATCATCTATATGGTTT+TGG	-	chr8.3:62043628-62043647	MS.gene57528:intron	25.0%
!!!	ACTTTTTGTAGAGTATTTAG+GGG	+	chr8.3:62044120-62044139	None:intergenic	25.0%
!!!	CACTTTTTGTAGAGTATTTA+GGG	+	chr8.3:62044121-62044140	None:intergenic	25.0%
!!!	TATAGATTTTGAAACATCCA+CGG	-	chr8.3:62043414-62043433	MS.gene57528:CDS	25.0%
!!!	TATTGTTGTCTTTGATTTGA+TGG	-	chr8.3:62043882-62043901	MS.gene57528:intron	25.0%
	AAACATAAAAGAGACTTCAC+CGG	+	chr8.3:62043268-62043287	None:intergenic	30.0%
	AAAGCAGGATCATTCTTTAA+CGG	-	chr8.3:62043811-62043830	MS.gene57528:intron	30.0%
	AAATAATAGGTTCATGCAGA+GGG	-	chr8.3:62043497-62043516	MS.gene57528:CDS	30.0%
	AACAAGTGGAATGAAATTGA+AGG	-	chr8.3:62043751-62043770	MS.gene57528:intron	30.0%
	AAGTCTCTTGTAATTCCTAT+TGG	-	chr8.3:62044077-62044096	MS.gene57528:intron	30.0%
	AATTTCTTAGTCTATGGAGT+AGG	-	chr8.3:62043983-62044002	MS.gene57528:intron	30.0%
	ACAAAAAGTGGTGATATTGT+TGG	-	chr8.3:62044131-62044150	MS.gene57528:intron	30.0%
	ATGAATCCAAATGCATTTGA+AGG	-	chr8.3:62044218-62044237	MS.gene57528:CDS	30.0%
	ATGCATAATCATACAAAGGA+CGG	-	chr8.3:62043041-62043060	MS.gene57528:CDS	30.0%
	ATTGTTGCACAGTTGAAATA+TGG	-	chr8.3:62044019-62044038	MS.gene57528:intron	30.0%
	ATTTGAATGAGTAATTCAGC+AGG	+	chr8.3:62043232-62043251	None:intergenic	30.0%
	CCTAAATACTCTACAAAAAG+TGG	-	chr8.3:62044119-62044138	MS.gene57528:intron	30.0%
	CCTTATGCATAATCATACAA+AGG	-	chr8.3:62043037-62043056	MS.gene57528:CDS	30.0%
	CCTTTGTATGATTATGCATA+AGG	+	chr8.3:62043040-62043059	None:intergenic	30.0%
	TAACTTCTCTCAAATACAAC+CGG	-	chr8.3:62043201-62043220	MS.gene57528:CDS	30.0%
	TATCATTGGTCCTATTATAC+CGG	+	chr8.3:62043093-62043112	None:intergenic	30.0%
	TATTAACACAATTCTTGCTG+CGG	+	chr8.3:62043362-62043381	None:intergenic	30.0%
	TATTGTCAAATAACAGCTTC+TGG	+	chr8.3:62042992-62043011	None:intergenic	30.0%
	TATTTCTTTGTGAAACCTAG+AGG	+	chr8.3:62043569-62043588	None:intergenic	30.0%
	TCATAAAAAAAATCACGTCG+GGG	+	chr8.3:62043478-62043497	None:intergenic	30.0%
	TGAATCCAAATGCATTTGAA+GGG	-	chr8.3:62044219-62044238	MS.gene57528:CDS	30.0%
	TGCCATGAATATCATCTATA+TGG	-	chr8.3:62043622-62043641	MS.gene57528:intron	30.0%
	TTGGAGAATTTCTTAGTCTA+TGG	-	chr8.3:62043977-62043996	MS.gene57528:intron	30.0%
	TTGTTGCACAGTTGAAATAT+GGG	-	chr8.3:62044020-62044039	MS.gene57528:intron	30.0%
!	TATTATGGTTTGTGGGTATT+TGG	-	chr8.3:62043958-62043977	MS.gene57528:intron	30.0%
!!	TTGTCTTTGATTTGATGGAA+AGG	-	chr8.3:62043887-62043906	MS.gene57528:intron	30.0%
!!!	CCACTTTTTGTAGAGTATTT+AGG	+	chr8.3:62044122-62044141	None:intergenic	30.0%
!!!	TATATGGTTTTGGTTATGAC+CGG	-	chr8.3:62043638-62043657	MS.gene57528:intron	30.0%
	AACCATAATACACAGGATCA+TGG	+	chr8.3:62043948-62043967	None:intergenic	35.0%
	AACCATGATCCTGTGTATTA+TGG	-	chr8.3:62043943-62043962	MS.gene57528:intron	35.0%
	AAGCAGGATCATTCTTTAAC+GGG	-	chr8.3:62043812-62043831	MS.gene57528:intron	35.0%
	AATCAGAGACTCTGTATACA+TGG	+	chr8.3:62044246-62044265	None:intergenic	35.0%
	AGACAAAACTTCATCACAGT+TGG	-	chr8.3:62043708-62043727	MS.gene57528:intron	35.0%
	AGTAATTCAGCAGGATTAAC+CGG	+	chr8.3:62043223-62043242	None:intergenic	35.0%
	AGTTGAAATATGGGTGATGA+AGG	-	chr8.3:62044029-62044048	MS.gene57528:intron	35.0%
	ATCCTGTGTATTATGGTTTG+TGG	-	chr8.3:62043950-62043969	MS.gene57528:intron	35.0%
	CATCACTTATTTGAATGCCA+TGG	-	chr8.3:62043780-62043799	MS.gene57528:intron	35.0%
	CCAAGTAATCATCTCTTAAC+CGG	+	chr8.3:62043660-62043679	None:intergenic	35.0%
	GAAATAATAGGTTCATGCAG+AGG	-	chr8.3:62043496-62043515	MS.gene57528:CDS	35.0%
	GAATACAACAACATTCGTCT+TGG	-	chr8.3:62044051-62044070	MS.gene57528:intron	35.0%
	GAATCCAAATGCATTTGAAG+GGG	-	chr8.3:62044220-62044239	MS.gene57528:CDS	35.0%
	GCATTCAAATAAGTGATGTG+AGG	+	chr8.3:62043778-62043797	None:intergenic	35.0%
	GCTCGTAATTTCAAAGCAAA+AGG	+	chr8.3:62043601-62043620	None:intergenic	35.0%
	GGATCATGGTTAAAATCATC+TGG	+	chr8.3:62043934-62043953	None:intergenic	35.0%
	GTTAAGAGATGATTACTTGG+TGG	-	chr8.3:62043660-62043679	MS.gene57528:intron	35.0%
	TCAAATGCGTTTGTAAGTCA+TGG	-	chr8.3:62043287-62043306	MS.gene57528:intron	35.0%
	TGGTTAAAATCATCTGGAAG+AGG	+	chr8.3:62043928-62043947	None:intergenic	35.0%
!	AGATGAAGTTTTCTGCACAA+TGG	+	chr8.3:62043175-62043194	None:intergenic	35.0%
!	TCCTGTGTATTATGGTTTGT+GGG	-	chr8.3:62043951-62043970	MS.gene57528:intron	35.0%
!	TCTCTTTGAGAGATAACAAG+TGG	-	chr8.3:62043737-62043756	MS.gene57528:intron	35.0%
!!	CTGTGATGAAGTTTTGTCTA+AGG	+	chr8.3:62043707-62043726	None:intergenic	35.0%
!!	GATGAAGTTTTGTCTAAGGT+TGG	+	chr8.3:62043703-62043722	None:intergenic	35.0%
	AAAAAAAATCACGTCGGGGA+AGG	+	chr8.3:62043474-62043493	None:intergenic	40.0%
	AAGTCAAGCTCATCACCAAT+AGG	+	chr8.3:62044095-62044114	None:intergenic	40.0%
	AATTATGATGTCCGTGGAGA+CGG	+	chr8.3:62043144-62043163	None:intergenic	40.0%
	ACATGCGAATTTGCAAAGTG+AGG	+	chr8.3:62043331-62043350	None:intergenic	40.0%
	ACCCACAAACCATAATACAC+AGG	+	chr8.3:62043955-62043974	None:intergenic	40.0%
	AGCAGGATCATTCTTTAACG+GGG	-	chr8.3:62043813-62043832	MS.gene57528:intron	40.0%
	CCGGTTAAGAGATGATTACT+TGG	-	chr8.3:62043657-62043676	MS.gene57528:intron	40.0%
	CGAATTTGCAAAGTGAGGAT+CGG	+	chr8.3:62043326-62043345	None:intergenic	40.0%
	GATATTGTTGGAACTGATGG+TGG	-	chr8.3:62044143-62044162	MS.gene57528:intron	40.0%
	GGAACATGATTGTGTTTCAC+TGG	-	chr8.3:62043435-62043454	MS.gene57528:CDS	40.0%
	GGTGATATTGTTGGAACTGA+TGG	-	chr8.3:62044140-62044159	MS.gene57528:intron	40.0%
	GTTCAAGAAACCTATGCGTA+TGG	-	chr8.3:62043536-62043555	MS.gene57528:CDS	40.0%
	TCTATAGAGCGAATTCCAAC+AGG	+	chr8.3:62043400-62043419	None:intergenic	40.0%
	TCTTTAACGGGGCTATTCAT+TGG	-	chr8.3:62043824-62043843	MS.gene57528:intron	40.0%
	TCTTTGTGAAACCTAGAGGA+TGG	+	chr8.3:62043565-62043584	None:intergenic	40.0%
	TGAAACACAATCATGTTCCG+TGG	+	chr8.3:62043434-62043453	None:intergenic	40.0%
	TGAGTAATTAACCGTCTCCA+CGG	-	chr8.3:62043130-62043149	MS.gene57528:CDS	40.0%
	ACGGTATGTTCCCTTGTCTA+AGG	-	chr8.3:62043060-62043079	MS.gene57528:CDS	45.0%
	AGGCCATGATCCGGTATAAT+AGG	-	chr8.3:62043080-62043099	MS.gene57528:CDS	45.0%
	ATGGCCCCTTCAAATGCATT+TGG	+	chr8.3:62044227-62044246	None:intergenic	45.0%
	CCACGGACATCATAATTCAC+TGG	-	chr8.3:62043147-62043166	MS.gene57528:CDS	45.0%
	CCAGTGAATTATGATGTCCG+TGG	+	chr8.3:62043150-62043169	None:intergenic	45.0%
	GAGTCTCTGATTTCACTCTC+TGG	-	chr8.3:62044254-62044273	MS.gene57528:CDS	45.0%
	GGTCCTATTATACCGGATCA+TGG	+	chr8.3:62043086-62043105	None:intergenic	45.0%
	GTGGAGACGGTTAATTACTC+AGG	+	chr8.3:62043131-62043150	None:intergenic	45.0%
	TCAAATCCTGCTGAGTTTGC+CGG	-	chr8.3:62043246-62043265	MS.gene57528:intron	45.0%
	TCAAGAACTCCAACTCCTGT+TGG	-	chr8.3:62043382-62043401	MS.gene57528:CDS	45.0%
	TCCTGCTTTGTGATAAGCCA+TGG	+	chr8.3:62043800-62043819	None:intergenic	45.0%
!	AGGATGGATTCCATACGCAT+AGG	+	chr8.3:62043549-62043568	None:intergenic	45.0%
!	TTTGTCTAAGGTTGGACGAG+AGG	+	chr8.3:62043695-62043714	None:intergenic	45.0%
	GAGCGAATTCCAACAGGAGT+TGG	+	chr8.3:62043394-62043413	None:intergenic	50.0%
	GCCATGGCTTATCACAAAGC+AGG	-	chr8.3:62043796-62043815	MS.gene57528:intron	50.0%
	GCGTATGGAATCCATCCTCT+AGG	-	chr8.3:62043551-62043570	MS.gene57528:CDS	50.0%
	GTCGGGGAAGGAGAAAAGTA+TGG	+	chr8.3:62043462-62043481	None:intergenic	50.0%
!	CCTTGTCTAAGGCCATGATC+CGG	-	chr8.3:62043071-62043090	MS.gene57528:CDS	50.0%
!	CGGATCATGGCCTTAGACAA+GGG	+	chr8.3:62043073-62043092	None:intergenic	50.0%
!!	AACTGATGGTGGTCGTGGAT+TGG	-	chr8.3:62044154-62044173	MS.gene57528:intron	50.0%
	ACTTCACCGGCAAACTCAGC+AGG	+	chr8.3:62043255-62043274	None:intergenic	55.0%
!	CCGGATCATGGCCTTAGACA+AGG	+	chr8.3:62043074-62043093	None:intergenic	55.0%
!!	GTTGGAACTGATGGTGGTCG+TGG	-	chr8.3:62044149-62044168	MS.gene57528:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	62042978	62044295	62042978	ID=MS.gene57528
chr8.3	mRNA	62042978	62044295	62042978	ID=MS.gene57528.t1;Parent=MS.gene57528
chr8.3	exon	62044211	62044295	62044211	ID=MS.gene57528.t1.exon1;Parent=MS.gene57528.t1
chr8.3	CDS	62044211	62044295	62044211	ID=cds.MS.gene57528.t1;Parent=MS.gene57528.t1
chr8.3	exon	62043309	62043584	62043309	ID=MS.gene57528.t1.exon2;Parent=MS.gene57528.t1
chr8.3	CDS	62043309	62043584	62043309	ID=cds.MS.gene57528.t1;Parent=MS.gene57528.t1
chr8.3	exon	62042978	62043222	62042978	ID=MS.gene57528.t1.exon3;Parent=MS.gene57528.t1
chr8.3	CDS	62042978	62043222	62042978	ID=cds.MS.gene57528.t1;Parent=MS.gene57528.t1

Gene Sequence

>MS.gene57528

ATGGGTAAGATCCAGAAGCTGTTATTTGACAATAATCGTTCAATAAGGTACAGTGATATCCTTATGCATAATCATACAAAGGACGGTATGTTCCCTTGTCTAAGGCCATGATCCGGTATAATAGGACCAATGATATCCTTATATATTATGCCTGAGTAATTAACCGTCTCCACGGACATCATAATTCACTGGATCCATTGTGCAGAAAACTTCATCTTCAACATAACTTCTCTCAAATACAACCGGTTAATCCTGCTGAATTACTCATTCAAATCCTGCTGAGTTTGCCGGTGAAGTCTCTTTTATGTTTCAAATGCGTTTGTAAGTCATGGTTTTCTATTATCTCCGATCCTCACTTTGCAAATTCGCATGTTGATGTTTCCGCAGCAAGAATTGTGTTAATATCAAGAACTCCAACTCCTGTTGGAATTCGCTCTATAGATTTTGAAACATCCACGGAACATGATTGTGTTTCACTGGACCATACTTTTCTCCTTCCCCGACGTGATTTTTTTTATGAAATAATAGGTTCATGCAGAGGGTTTATAATTTTGCACTGTTCAAGAAACCTATGCGTATGGAATCCATCCTCTAGGTTTCACAAAGAAATATCTTTGTCTCCTTTTGCTTTGAAATTACGAGCATGCCATGAATATCATCTATATGGTTTTGGTTATGACCGGTTAAGAGATGATTACTTGGTGGTTTTAGTGTCCTCTCGTCCAACCTTAGACAAAACTTCATCACAGTTGGAGTTTTTCTCTTTGAGAGATAACAAGTGGAATGAAATTGAAGGTCCTCACATCACTTATTTGAATGCCATGGCTTATCACAAAGCAGGATCATTCTTTAACGGGGCTATTCATTGGCTTGCTTCTCGTTATTATAATATACGAGTGGACGTTATTGTTGTCTTTGATTTGATGGAAAGGAAACTGTTAGAGATACCTCTTCCAGATGATTTTAACCATGATCCTGTGTATTATGGTTTGTGGGTATTTGGAGAATTTCTTAGTCTATGGAGTAGGAAGTTTCATAAATATTGTTGCACAGTTGAAATATGGGTGATGAAGGAATACAACAACATTCGTCTTGGACTAAGTCTCTTGTAATTCCTATTGGTGATGAGCTTGACTTTTCCCCTAAATACTCTACAAAAAGTGGTGATATTGTTGGAACTGATGGTGGTCGTGGATTGGTGAAGTATAATAATAAAGGACAGCTGTTAGAGTATCTCGAAATGAATCCAAATGCATTTGAAGGGGCCATGTATACAGAGTCTCTGATTTCACTCTCTGGTGACCGTGAGCAAGTTTAA

Protein sequence

>MS.gene57528.t1

MGKIQKLLFDNNRSIRYSDILMHNHTKDVSSRPTLDKTSSQLEFFSLRDNKWNEIEGPHITYLNAMAYHKAGSFFNGAIHWLASRYYNIRVDVIVVFDLMERKLLEIPLPDDFNHDPVYYGIQQHSSWTKSLVIPIGDELDFSPKYSTKSGDIVGTDGGRGLVKYNNKGQLLEYLEMNPNAFEGAMYTESLISLSGDREQV