Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24213.t1 | RHN77539.1 | 84.3 | 318 | 29 | 2 | 195 | 491 | 64 | 381 | 1.60E-156 | 562.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24213.t1 | Q8GY84 | 46.1 | 204 | 98 | 3 | 1 | 195 | 8 | 208 | 1.9e-41 | 171.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24213.t1 | G7I5X5 | 84.3 | 318 | 29 | 2 | 195 | 491 | 35 | 352 | 1.2e-156 | 562.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24213.t1 | MTR_1g023400 | 84.591 | 318 | 28 | 2 | 195 | 491 | 35 | 352 | 0.0 | 555 |
MS.gene24213.t1 | MTR_1g022200 | 57.879 | 330 | 101 | 11 | 195 | 492 | 47 | 370 | 4.68e-108 | 326 |
MS.gene24213.t1 | MTR_1g022305 | 82.051 | 195 | 16 | 1 | 1 | 195 | 1 | 176 | 1.58e-106 | 325 |
MS.gene24213.t1 | MTR_5g069330 | 62.245 | 196 | 71 | 3 | 1 | 195 | 1 | 194 | 1.02e-69 | 228 |
MS.gene24213.t1 | MTR_5g069330 | 62.245 | 196 | 71 | 3 | 1 | 195 | 5 | 198 | 1.16e-69 | 228 |
MS.gene24213.t1 | MTR_1g023430 | 71.533 | 137 | 33 | 2 | 359 | 492 | 40 | 173 | 3.87e-61 | 198 |
MS.gene24213.t1 | MTR_1g009110 | 41.108 | 343 | 148 | 14 | 195 | 492 | 46 | 379 | 9.15e-61 | 204 |
MS.gene24213.t1 | MTR_6g082080 | 53.571 | 196 | 85 | 4 | 1 | 195 | 8 | 198 | 8.95e-57 | 195 |
MS.gene24213.t1 | MTR_7g056830 | 53.061 | 196 | 86 | 4 | 1 | 195 | 8 | 198 | 6.57e-56 | 192 |
MS.gene24213.t1 | MTR_4g080200 | 42.012 | 338 | 132 | 16 | 195 | 491 | 35 | 349 | 2.23e-55 | 189 |
MS.gene24213.t1 | MTR_1g024125 | 75.000 | 112 | 27 | 1 | 364 | 474 | 38 | 149 | 3.51e-53 | 176 |
MS.gene24213.t1 | MTR_1g022105 | 38.127 | 299 | 138 | 9 | 195 | 476 | 53 | 321 | 2.61e-50 | 174 |
MS.gene24213.t1 | MTR_1g037540 | 39.933 | 298 | 131 | 13 | 234 | 491 | 111 | 400 | 2.72e-44 | 160 |
MS.gene24213.t1 | MTR_8g032230 | 53.896 | 154 | 68 | 2 | 1 | 154 | 8 | 158 | 5.94e-44 | 153 |
MS.gene24213.t1 | MTR_2g066050 | 37.629 | 194 | 111 | 5 | 3 | 193 | 53 | 239 | 2.86e-31 | 126 |
MS.gene24213.t1 | MTR_1g009617 | 49.242 | 132 | 65 | 1 | 25 | 154 | 4 | 135 | 5.63e-29 | 118 |
MS.gene24213.t1 | MTR_4g077370 | 35.714 | 196 | 112 | 6 | 3 | 193 | 250 | 436 | 1.02e-26 | 112 |
MS.gene24213.t1 | MTR_4g077370 | 35.885 | 209 | 101 | 8 | 3 | 204 | 2 | 184 | 7.05e-24 | 104 |
MS.gene24213.t1 | MTR_4g079320 | 31.780 | 236 | 144 | 5 | 4 | 226 | 20 | 251 | 6.62e-24 | 105 |
MS.gene24213.t1 | MTR_3g049990 | 31.500 | 200 | 132 | 3 | 3 | 201 | 152 | 347 | 1.58e-22 | 101 |
MS.gene24213.t1 | MTR_2g041140 | 30.698 | 215 | 140 | 5 | 3 | 212 | 141 | 351 | 1.38e-21 | 99.0 |
MS.gene24213.t1 | MTR_2g031570 | 68.254 | 63 | 19 | 1 | 3 | 65 | 72 | 133 | 9.49e-21 | 89.0 |
MS.gene24213.t1 | MTR_5g092560 | 28.643 | 199 | 127 | 4 | 28 | 214 | 100 | 295 | 1.05e-20 | 96.3 |
MS.gene24213.t1 | MTR_1g008000 | 33.333 | 273 | 107 | 13 | 251 | 492 | 41 | 269 | 1.10e-19 | 89.4 |
MS.gene24213.t1 | MTR_4g068990 | 28.643 | 199 | 125 | 5 | 29 | 214 | 101 | 295 | 4.52e-19 | 90.9 |
MS.gene24213.t1 | MTR_3g467550 | 29.648 | 199 | 125 | 7 | 1 | 192 | 115 | 305 | 5.47e-19 | 89.7 |
MS.gene24213.t1 | MTR_3g467550 | 29.648 | 199 | 125 | 7 | 1 | 192 | 115 | 305 | 5.74e-19 | 90.1 |
MS.gene24213.t1 | MTR_3g467550 | 30.387 | 181 | 115 | 6 | 19 | 192 | 98 | 274 | 1.21e-18 | 89.4 |
MS.gene24213.t1 | MTR_8g027775 | 30.682 | 176 | 109 | 6 | 29 | 194 | 127 | 299 | 1.41e-18 | 89.0 |
MS.gene24213.t1 | MTR_8g027770 | 31.073 | 177 | 109 | 6 | 29 | 195 | 226 | 399 | 2.01e-18 | 89.0 |
MS.gene24213.t1 | MTR_7g109720 | 29.500 | 200 | 129 | 7 | 1 | 195 | 230 | 422 | 3.09e-18 | 88.6 |
MS.gene24213.t1 | MTR_4g112340 | 33.721 | 172 | 107 | 4 | 28 | 195 | 121 | 289 | 4.23e-18 | 87.8 |
MS.gene24213.t1 | MTR_2g055850 | 31.980 | 197 | 127 | 5 | 2 | 195 | 90 | 282 | 7.93e-18 | 86.7 |
MS.gene24213.t1 | MTR_4g134170 | 25.857 | 321 | 198 | 11 | 1 | 293 | 285 | 593 | 1.94e-17 | 85.9 |
MS.gene24213.t1 | MTR_8g027780 | 31.034 | 174 | 107 | 6 | 29 | 192 | 131 | 301 | 7.01e-17 | 83.2 |
MS.gene24213.t1 | MTR_8g027780 | 31.034 | 174 | 107 | 6 | 29 | 192 | 131 | 301 | 9.75e-17 | 83.6 |
MS.gene24213.t1 | MTR_8g097000 | 27.749 | 191 | 121 | 7 | 28 | 204 | 312 | 499 | 4.48e-16 | 81.6 |
MS.gene24213.t1 | MTR_6g005320 | 24.138 | 319 | 204 | 10 | 1 | 293 | 247 | 553 | 4.82e-16 | 81.3 |
MS.gene24213.t1 | MTR_3g083690 | 27.778 | 198 | 121 | 6 | 6 | 189 | 150 | 339 | 1.09e-14 | 77.0 |
MS.gene24213.t1 | MTR_2g100230 | 29.016 | 193 | 127 | 6 | 1 | 189 | 94 | 280 | 1.35e-14 | 76.6 |
MS.gene24213.t1 | MTR_1g054630 | 29.381 | 194 | 122 | 6 | 6 | 189 | 159 | 347 | 1.93e-14 | 76.3 |
MS.gene24213.t1 | MTR_7g076820 | 27.692 | 195 | 126 | 7 | 26 | 213 | 172 | 358 | 2.37e-14 | 75.9 |
MS.gene24213.t1 | MTR_4g459350 | 25.862 | 232 | 157 | 7 | 3 | 229 | 41 | 262 | 2.50e-14 | 73.6 |
MS.gene24213.t1 | MTR_4g114120 | 27.638 | 199 | 118 | 7 | 14 | 194 | 154 | 344 | 3.54e-14 | 75.5 |
MS.gene24213.t1 | MTR_2g007000 | 26.154 | 195 | 133 | 6 | 1 | 189 | 502 | 691 | 1.62e-13 | 73.9 |
MS.gene24213.t1 | MTR_4g059460 | 25.112 | 223 | 158 | 5 | 3 | 220 | 44 | 262 | 4.56e-13 | 72.0 |
MS.gene24213.t1 | MTR_7g057250 | 29.268 | 205 | 109 | 8 | 3 | 180 | 163 | 358 | 5.79e-13 | 72.0 |
MS.gene24213.t1 | MTR_0915s0010 | 25.907 | 193 | 132 | 5 | 26 | 213 | 11 | 197 | 7.42e-13 | 69.3 |
MS.gene24213.t1 | MTR_5g027840 | 26.531 | 196 | 129 | 6 | 1 | 189 | 102 | 289 | 1.23e-12 | 70.5 |
MS.gene24213.t1 | MTR_2g043360 | 26.203 | 187 | 130 | 4 | 3 | 184 | 41 | 224 | 1.50e-12 | 70.5 |
MS.gene24213.t1 | MTR_3g449250 | 28.436 | 211 | 132 | 10 | 7 | 211 | 94 | 291 | 2.67e-12 | 69.3 |
MS.gene24213.t1 | MTR_3g449250 | 28.436 | 211 | 132 | 10 | 7 | 211 | 94 | 291 | 2.75e-12 | 69.3 |
MS.gene24213.t1 | MTR_6g005550 | 24.715 | 263 | 182 | 8 | 3 | 260 | 165 | 416 | 1.58e-11 | 67.4 |
MS.gene24213.t1 | MTR_2g032630 | 27.933 | 179 | 121 | 5 | 13 | 189 | 507 | 679 | 3.66e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24213.t1 | AT5G60990 | 46.829 | 205 | 95 | 5 | 1 | 195 | 8 | 208 | 3.25e-50 | 178 |
MS.gene24213.t1 | AT1G16280 | 34.848 | 198 | 111 | 7 | 3 | 193 | 59 | 245 | 6.66e-27 | 114 |
MS.gene24213.t1 | AT4G16630 | 30.374 | 214 | 141 | 4 | 3 | 212 | 168 | 377 | 1.59e-21 | 98.6 |
MS.gene24213.t1 | AT1G77030 | 32.787 | 183 | 120 | 2 | 19 | 201 | 44 | 223 | 3.47e-21 | 97.8 |
MS.gene24213.t1 | AT5G08620 | 30.508 | 177 | 110 | 6 | 29 | 195 | 106 | 279 | 6.32e-20 | 93.2 |
MS.gene24213.t1 | AT5G63630 | 31.073 | 177 | 109 | 6 | 29 | 195 | 80 | 253 | 9.03e-20 | 92.8 |
MS.gene24213.t1 | AT5G63630 | 31.073 | 177 | 109 | 6 | 29 | 195 | 274 | 447 | 1.65e-19 | 92.4 |
MS.gene24213.t1 | AT3G18600 | 32.143 | 196 | 125 | 5 | 3 | 195 | 90 | 280 | 1.66e-19 | 92.0 |
MS.gene24213.t1 | AT5G54910 | 31.285 | 179 | 118 | 3 | 19 | 195 | 87 | 262 | 4.51e-19 | 90.9 |
MS.gene24213.t1 | AT5G08610 | 29.944 | 177 | 111 | 6 | 29 | 195 | 408 | 581 | 7.09e-19 | 90.5 |
MS.gene24213.t1 | AT2G47330 | 29.082 | 196 | 129 | 6 | 1 | 192 | 227 | 416 | 1.08e-18 | 89.7 |
MS.gene24213.t1 | AT2G40700 | 30.556 | 180 | 120 | 3 | 3 | 177 | 31 | 210 | 7.88e-17 | 84.0 |
MS.gene24213.t1 | AT5G65900 | 29.082 | 196 | 133 | 4 | 2 | 195 | 154 | 345 | 7.33e-16 | 80.9 |
MS.gene24213.t1 | AT5G63120 | 27.979 | 193 | 129 | 6 | 1 | 189 | 164 | 350 | 2.76e-15 | 78.6 |
MS.gene24213.t1 | AT5G63120 | 27.979 | 193 | 129 | 6 | 1 | 189 | 164 | 350 | 2.76e-15 | 78.6 |
MS.gene24213.t1 | AT5G63120 | 27.979 | 193 | 129 | 6 | 1 | 189 | 164 | 350 | 2.76e-15 | 78.6 |
MS.gene24213.t1 | AT5G63120 | 27.979 | 193 | 129 | 6 | 1 | 189 | 164 | 350 | 3.50e-15 | 78.2 |
MS.gene24213.t1 | AT5G63120 | 27.979 | 193 | 129 | 6 | 1 | 189 | 164 | 350 | 3.92e-15 | 78.6 |
MS.gene24213.t1 | AT2G33730 | 27.315 | 216 | 127 | 7 | 1 | 192 | 312 | 521 | 4.61e-15 | 78.6 |
MS.gene24213.t1 | AT3G61240 | 28.205 | 195 | 127 | 5 | 26 | 214 | 147 | 334 | 6.12e-15 | 77.4 |
MS.gene24213.t1 | AT3G61240 | 28.205 | 195 | 127 | 5 | 26 | 214 | 147 | 334 | 6.12e-15 | 77.4 |
MS.gene24213.t1 | AT4G00660 | 26.829 | 164 | 114 | 3 | 26 | 189 | 154 | 311 | 6.78e-14 | 74.3 |
MS.gene24213.t1 | AT4G00660 | 26.829 | 164 | 114 | 3 | 26 | 189 | 154 | 311 | 6.78e-14 | 74.3 |
MS.gene24213.t1 | AT1G55150 | 26.943 | 193 | 131 | 6 | 1 | 189 | 98 | 284 | 1.35e-13 | 73.6 |
MS.gene24213.t1 | AT1G55150 | 26.943 | 193 | 131 | 6 | 1 | 189 | 123 | 309 | 1.80e-13 | 73.2 |
MS.gene24213.t1 | AT3G09620 | 26.203 | 187 | 129 | 5 | 8 | 189 | 403 | 585 | 2.96e-13 | 72.8 |
MS.gene24213.t1 | AT3G09620 | 26.203 | 187 | 129 | 5 | 8 | 189 | 402 | 584 | 3.04e-13 | 72.8 |
MS.gene24213.t1 | AT1G20920 | 24.000 | 200 | 143 | 5 | 8 | 202 | 197 | 392 | 3.62e-13 | 72.4 |
MS.gene24213.t1 | AT1G28180 | 28.426 | 197 | 127 | 6 | 34 | 224 | 4 | 192 | 6.30e-13 | 70.5 |
MS.gene24213.t1 | AT2G42520 | 26.904 | 197 | 123 | 6 | 6 | 189 | 165 | 353 | 7.40e-13 | 71.2 |
MS.gene24213.t1 | AT2G42520 | 26.904 | 197 | 123 | 6 | 6 | 189 | 165 | 353 | 7.40e-13 | 71.2 |
MS.gene24213.t1 | AT2G42520 | 26.904 | 197 | 123 | 6 | 6 | 189 | 165 | 353 | 7.40e-13 | 71.2 |
MS.gene24213.t1 | AT1G71370 | 28.070 | 171 | 114 | 5 | 29 | 193 | 42 | 209 | 1.09e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT1G20920 | 25.134 | 187 | 131 | 5 | 8 | 189 | 535 | 717 | 1.59e-12 | 70.9 |
MS.gene24213.t1 | AT3G16840 | 28.877 | 187 | 99 | 6 | 20 | 180 | 207 | 385 | 5.27e-12 | 68.9 |
MS.gene24213.t1 | AT3G16840 | 28.877 | 187 | 99 | 6 | 20 | 180 | 208 | 386 | 5.32e-12 | 68.9 |
MS.gene24213.t1 | AT3G09720 | 32.051 | 156 | 91 | 6 | 20 | 169 | 158 | 304 | 3.86e-11 | 65.9 |
MS.gene24213.t1 | AT3G09720 | 32.051 | 156 | 91 | 6 | 20 | 169 | 158 | 304 | 3.86e-11 | 65.9 |
Find 116 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATGCTGGGGTGTCTTTC+AGG | 0.172885 | 1.2:-1600177 | None:intergenic |
CTCCCGTCATCTTGAGCATT+TGG | 0.258740 | 1.2:+1602075 | MS.gene24213:CDS |
ATGAAATCATTTACGGATCT+TGG | 0.262908 | 1.2:+1599392 | MS.gene24213:CDS |
AATCAACATCAATTTGAAAT+TGG | 0.285324 | 1.2:-1602253 | None:intergenic |
GCCCTCTGAGTTGGTGAAAC+TGG | 0.301844 | 1.2:-1601959 | None:intergenic |
TTTAACAGAGCCTGGAAAAT+AGG | 0.317351 | 1.2:-1599653 | None:intergenic |
TGGTGTGTGGTCTTAGTAAA+AGG | 0.318775 | 1.2:-1601822 | None:intergenic |
AACAAAAGCTCCGGTCTTAC+CGG | 0.327768 | 1.2:-1599627 | None:intergenic |
CTCTTCAAGGTTGTGACTCC+TGG | 0.337187 | 1.2:+1600139 | MS.gene24213:intron |
AGAAGAAATGAAATCATTTA+CGG | 0.345303 | 1.2:+1599385 | None:intergenic |
TAATTCCATCATAACTAGTA+TGG | 0.350426 | 1.2:-1601737 | None:intergenic |
ATAAATGTTGTCCGGTTACT+AGG | 0.358901 | 1.2:-1600935 | None:intergenic |
ATAGAATATTTGCAACAAAA+TGG | 0.364437 | 1.2:-1601917 | None:intergenic |
GCCATTTCTCCACCACGTTC+CGG | 0.371024 | 1.2:+1599608 | MS.gene24213:CDS |
TCCCGTCATCTTGAGCATTT+GGG | 0.381975 | 1.2:+1602076 | MS.gene24213:CDS |
TTGTTAACAGCGTTTATCAT+TGG | 0.387639 | 1.2:+1601868 | MS.gene24213:CDS |
TAGGAAAGATTCCTAGTAAC+CGG | 0.390770 | 1.2:+1600924 | MS.gene24213:CDS |
GACAGCAACTCATGCATGTA+TGG | 0.397679 | 1.2:+1601666 | MS.gene24213:CDS |
TCTTGGCTTATCTCTTCAAT+TGG | 0.399029 | 1.2:+1599409 | MS.gene24213:CDS |
ATAACTTAAGTACCAACTCT+TGG | 0.401560 | 1.2:+1601778 | MS.gene24213:CDS |
TGAAGTTGCTGGCTACTTTG+AGG | 0.403585 | 1.2:+1599839 | MS.gene24213:CDS |
GACAATTGTTGTTGGAAAAG+AGG | 0.406262 | 1.2:-1601493 | None:intergenic |
AACTCATGCATGTATGGTTT+CGG | 0.406814 | 1.2:+1601672 | MS.gene24213:CDS |
AAAAGTGCGACAATTGTTGT+TGG | 0.410531 | 1.2:-1601501 | None:intergenic |
GAGGGATTTGATGTGTATTA+CGG | 0.412566 | 1.2:-1601474 | None:intergenic |
CCTTCGTAAATTAAAATACC+TGG | 0.430217 | 1.2:+1600201 | MS.gene24213:CDS |
CATCTTGAGCATTTGGGTGA+TGG | 0.434538 | 1.2:+1602082 | MS.gene24213:CDS |
ACCGGAACGTGGTGGAGAAA+TGG | 0.439289 | 1.2:-1599609 | None:intergenic |
CATAGATGAGGCACACCTGC+TGG | 0.454053 | 1.2:+1600859 | MS.gene24213:CDS |
AACTTTGAAGTTGATGTTGT+TGG | 0.457396 | 1.2:-1601706 | None:intergenic |
ACTTGTGCTTGAATCTTTCG+CGG | 0.469466 | 1.2:-1599467 | None:intergenic |
ATGATTATCGCAACTTTGCA+TGG | 0.470664 | 1.2:+1601994 | MS.gene24213:CDS |
AAACTCCATACTAGTTATGA+TGG | 0.471735 | 1.2:+1601732 | MS.gene24213:CDS |
AAAGGAAGAGGATGTTCAGT+TGG | 0.476611 | 1.2:-1601804 | None:intergenic |
GTCCGGCATTTAACAGAGCC+TGG | 0.479888 | 1.2:-1599661 | None:intergenic |
CAAATCCTTGGAGGAAAGGT+TGG | 0.481459 | 1.2:+1602188 | MS.gene24213:CDS |
ACTTTGAAGTTGATGTTGTT+GGG | 0.482647 | 1.2:-1601705 | None:intergenic |
AAGGAAGAGGATGTTCAGTT+GGG | 0.484768 | 1.2:-1601803 | None:intergenic |
ATTTACGAAGGGAAAATGCT+GGG | 0.485299 | 1.2:-1600189 | None:intergenic |
TTCCAGGCTCTGTTAAATGC+CGG | 0.485825 | 1.2:+1599659 | MS.gene24213:CDS |
ACAATTGTTGTTGGAAAAGA+GGG | 0.492059 | 1.2:-1601492 | None:intergenic |
GAATCATACGGTAGTTGTAA+TGG | 0.492284 | 1.2:+1601533 | MS.gene24213:CDS |
GAGATCACACAAGCAAAGAA+TGG | 0.492630 | 1.2:-1599695 | None:intergenic |
ACAAGAGTGCTATATCTAGA+AGG | 0.495385 | 1.2:-1601849 | None:intergenic |
AAGGCAGACTCGGAGGAACT+TGG | 0.498515 | 1.2:-1601643 | None:intergenic |
CTTGTGTGATCTCTTCCTCA+AGG | 0.503237 | 1.2:+1599705 | MS.gene24213:CDS |
TGTTTCGTATGTGTGGCCTT+TGG | 0.504996 | 1.2:+1602153 | MS.gene24213:CDS |
ACACTACTTACAATGATATG+AGG | 0.506861 | 1.2:-1600054 | None:intergenic |
GTTGATGTTGTTGGGATCAT+CGG | 0.508372 | 1.2:-1601697 | None:intergenic |
AATTTACGAAGGGAAAATGC+TGG | 0.511095 | 1.2:-1600190 | None:intergenic |
ACCCAAATGCTCAAGATGAC+GGG | 0.515580 | 1.2:-1602077 | None:intergenic |
AGAACCCCACCTTTATGAAA+AGG | 0.517821 | 1.2:+1601369 | MS.gene24213:intron |
AAGAATGGCGATCAAATCCT+TGG | 0.518473 | 1.2:+1602176 | MS.gene24213:CDS |
GTTCTCCAACCTTTCCTCCA+AGG | 0.525401 | 1.2:-1602193 | None:intergenic |
ATGTGTGGCCTTTGGAAGAA+TGG | 0.525913 | 1.2:+1602161 | MS.gene24213:CDS |
GCTGGCTACTTTGAGGCCCT+AGG | 0.529090 | 1.2:+1599846 | MS.gene24213:CDS |
GTTGACAAGGGAGCTATGCT+TGG | 0.530092 | 1.2:-1602299 | None:intergenic |
AGCAAGGGAACCTTTGATCT+CGG | 0.535996 | 1.2:-1602027 | None:intergenic |
TTCAGTTGGGGTCCAAGAGT+TGG | 0.536792 | 1.2:-1601790 | None:intergenic |
CGATCAAATCCTTGGAGGAA+AGG | 0.537340 | 1.2:+1602184 | MS.gene24213:CDS |
TGATTATCGCAACTTTGCAT+GGG | 0.537469 | 1.2:+1601995 | MS.gene24213:CDS |
ACATGAGAGAAGAGTTACAT+AGG | 0.538503 | 1.2:-1601447 | None:intergenic |
TTTGATCGCCATTCTTCCAA+AGG | 0.545314 | 1.2:-1602169 | None:intergenic |
GAGGCCCTAGGTCAACACTT+TGG | 0.545712 | 1.2:+1599858 | MS.gene24213:CDS |
CCACCACGTTCCGGTAAGAC+CGG | 0.555243 | 1.2:+1599617 | MS.gene24213:CDS |
CACCCAAATGCTCAAGATGA+CGG | 0.555873 | 1.2:-1602078 | None:intergenic |
CCTAGCTATCTAGGTTGACA+AGG | 0.556438 | 1.2:-1602312 | None:intergenic |
CAACCAACCTTCTAAAGCAA+GGG | 0.557016 | 1.2:-1599495 | None:intergenic |
CTCACATCATATGACTATCA+AGG | 0.557926 | 1.2:+1602218 | MS.gene24213:CDS |
CATGAGAGAAGAGTTACATA+GGG | 0.558900 | 1.2:-1601446 | None:intergenic |
GATTGTGTTGCCGAGATCAA+AGG | 0.560123 | 1.2:+1602017 | MS.gene24213:CDS |
GCAGACTCGGAGGAACTTGG+TGG | 0.561638 | 1.2:-1601640 | None:intergenic |
ACATGCATGAGTTGCTGTCA+AGG | 0.562381 | 1.2:-1601662 | None:intergenic |
TTTATAAGAATGGAATCATA+CGG | 0.562387 | 1.2:+1601521 | MS.gene24213:CDS |
TACAATGCACAACATAAGCA+AGG | 0.562474 | 1.2:-1602043 | None:intergenic |
GTGGTCTTAGTAAAAGGAAG+AGG | 0.563530 | 1.2:-1601816 | None:intergenic |
GCTTATAATTCGATTCCAGC+AGG | 0.564883 | 1.2:-1600874 | None:intergenic |
AGTTGCTGTCAAGGCAGACT+CGG | 0.579329 | 1.2:-1601653 | None:intergenic |
AATAGGAAGAACAAAAGCTC+CGG | 0.582261 | 1.2:-1599636 | None:intergenic |
CGATAATCATATGAGAAGGT+TGG | 0.582312 | 1.2:-1601981 | None:intergenic |
TGCTATATCTAGAAGGACAT+TGG | 0.583334 | 1.2:-1601842 | None:intergenic |
GACTCCAAAGTGTTGACCTA+GGG | 0.585429 | 1.2:-1599862 | None:intergenic |
GGTTTGAAATTCCATGTCGG+AGG | 0.588327 | 1.2:-1600013 | None:intergenic |
TGGATTATAAGCAGTTCGTA+CGG | 0.589478 | 1.2:+1601888 | MS.gene24213:CDS |
GCTTGTTGCAACCTCCGACA+TGG | 0.590288 | 1.2:+1600002 | MS.gene24213:intron |
AGAAGGTTGGCCCTCTGAGT+TGG | 0.594377 | 1.2:-1601968 | None:intergenic |
AATGGCGATCAAATCCTTGG+AGG | 0.596817 | 1.2:+1602179 | MS.gene24213:CDS |
CCAACCAACCTTCTAAAGCA+AGG | 0.598253 | 1.2:-1599496 | None:intergenic |
ACCAGTTTCACCAACTCAGA+GGG | 0.601175 | 1.2:+1601958 | MS.gene24213:CDS |
TACGAAACATTGACACAAGT+GGG | 0.601347 | 1.2:-1602139 | None:intergenic |
AGGTTGCTGTAAAATCTCGT+TGG | 0.606209 | 1.2:-1600034 | None:intergenic |
GTTGCGATAATCATATGAGA+AGG | 0.609576 | 1.2:-1601985 | None:intergenic |
TGACTCCAAAGTGTTGACCT+AGG | 0.612583 | 1.2:-1599863 | None:intergenic |
GTGTCAATGTTTCGTATGTG+TGG | 0.615188 | 1.2:+1602146 | MS.gene24213:CDS |
ATACGAAACATTGACACAAG+TGG | 0.622567 | 1.2:-1602140 | None:intergenic |
AACCAACCTTCTAAAGCAAG+GGG | 0.627015 | 1.2:-1599494 | None:intergenic |
TCATGAAGGATCATGAGACT+AGG | 0.631962 | 1.2:-1601416 | None:intergenic |
GTTGGTTTGAAATTCCATGT+CGG | 0.632860 | 1.2:-1600016 | None:intergenic |
TTCAGATTCAATGACAGACA+AGG | 0.635201 | 1.2:+1600961 | MS.gene24213:CDS |
ACAATGCACAACATAAGCAA+GGG | 0.637347 | 1.2:-1602042 | None:intergenic |
TTTACGAAGGGAAAATGCTG+GGG | 0.640268 | 1.2:-1600188 | None:intergenic |
TGCTGTCAAGGCAGACTCGG+AGG | 0.652883 | 1.2:-1601650 | None:intergenic |
ACCCCACCTTTATGAAAAGG+AGG | 0.658364 | 1.2:+1601372 | MS.gene24213:CDS |
CTTGGACCAGGTCATAGATG+AGG | 0.670754 | 1.2:+1600847 | MS.gene24213:intron |
AACCAGTTTCACCAACTCAG+AGG | 0.670970 | 1.2:+1601957 | MS.gene24213:CDS |
GGGTGATGGATCAAAGTGGA+TGG | 0.671155 | 1.2:+1602096 | MS.gene24213:CDS |
TGATGGAATTATGAGATCAG+CGG | 0.673695 | 1.2:+1601749 | MS.gene24213:CDS |
AGGAAGAGGATGTTCAGTTG+GGG | 0.674344 | 1.2:-1601802 | None:intergenic |
GCTCCGGTCTTACCGGAACG+TGG | 0.675060 | 1.2:-1599620 | None:intergenic |
CTAGCTATCTAGGTTGACAA+GGG | 0.678773 | 1.2:-1602311 | None:intergenic |
CCGGTCTTACCGGAACGTGG+TGG | 0.680280 | 1.2:-1599617 | None:intergenic |
TGATAGTCATATGATGTGAG+CGG | 0.691442 | 1.2:-1602215 | None:intergenic |
GTTGGTGAAACTGGTTGTTG+CGG | 0.693105 | 1.2:-1601950 | None:intergenic |
TCTAGAAGGACATTGGTGTG+TGG | 0.699232 | 1.2:-1601835 | None:intergenic |
ATTTGGGTGATGGATCAAAG+TGG | 0.755177 | 1.2:+1602092 | MS.gene24213:CDS |
ACCAACCTTCTAAAGCAAGG+GGG | 0.770547 | 1.2:-1599493 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTAAGATATAACATC+TGG | - | chr1.2:1601047-1601066 | None:intergenic | 15.0% |
!! | CTCAAAAGATATAAATAAAA+AGG | - | chr1.2:1601078-1601097 | None:intergenic | 15.0% |
!! | TAATAAAGATTACTATTGAA+AGG | - | chr1.2:1600523-1600542 | None:intergenic | 15.0% |
!! | AAATTTCAACAATTTACTCT+TGG | + | chr1.2:1600465-1600484 | MS.gene24213:intron | 20.0% |
!! | AACGTAAAATATATGAAACA+AGG | - | chr1.2:1600802-1600821 | None:intergenic | 20.0% |
!! | AAGAGTAAATTGTTGAAATT+TGG | - | chr1.2:1600466-1600485 | None:intergenic | 20.0% |
!! | AATATGAATTCAATTTCTAC+AGG | + | chr1.2:1599572-1599591 | MS.gene24213:intron | 20.0% |
!! | AGAGTAAATTGTTGAAATTT+GGG | - | chr1.2:1600465-1600484 | None:intergenic | 20.0% |
!! | ATAGAATATTTGCAACAAAA+TGG | - | chr1.2:1601920-1601939 | None:intergenic | 20.0% |
!! | TTTATAAGAATGGAATCATA+CGG | + | chr1.2:1601521-1601540 | MS.gene24213:CDS | 20.0% |
!!! | AAACAACTTGAGTTTATTTT+AGG | + | chr1.2:1600905-1600924 | MS.gene24213:CDS | 20.0% |
!!! | AATCAACATCAATTTGAAAT+TGG | - | chr1.2:1602256-1602275 | None:intergenic | 20.0% |
! | AGAGTAAGAAATCAATTAGA+AGG | - | chr1.2:1600123-1600142 | None:intergenic | 25.0% |
! | ATATATGAAACAAGGACATA+TGG | - | chr1.2:1600794-1600813 | None:intergenic | 25.0% |
! | ATATCAGAGAAGATGAATTT+AGG | + | chr1.2:1601254-1601273 | MS.gene24213:intron | 25.0% |
! | CCAATATAAATGATTGTAGA+GGG | - | chr1.2:1600338-1600357 | None:intergenic | 25.0% |
! | CCTCTACAATCATTTATATT+GGG | + | chr1.2:1600336-1600355 | MS.gene24213:intron | 25.0% |
! | CTGAAAAAATAAATGTTGTC+CGG | - | chr1.2:1600946-1600965 | None:intergenic | 25.0% |
! | CTTGATAAGAGTTTATATAG+AGG | + | chr1.2:1600393-1600412 | MS.gene24213:intron | 25.0% |
! | GAGTAAATTGTTGAAATTTG+GGG | - | chr1.2:1600464-1600483 | None:intergenic | 25.0% |
! | TAACTGCATGTTTCAATAAT+TGG | - | chr1.2:1600646-1600665 | None:intergenic | 25.0% |
! | TAATTCCATCATAACTAGTA+TGG | - | chr1.2:1601740-1601759 | None:intergenic | 25.0% |
! | TTGAAAAATTGAGCTTAGAA+GGG | + | chr1.2:1601231-1601250 | MS.gene24213:intron | 25.0% |
! | TTTGTGAAAAACAACTCAAT+TGG | + | chr1.2:1599438-1599457 | MS.gene24213:CDS | 25.0% |
!! | AATTGATTTCTTACTCTTCA+AGG | + | chr1.2:1600126-1600145 | MS.gene24213:intron | 25.0% |
!! | AGATTTAGAGACTGAAATTT+TGG | + | chr1.2:1601280-1601299 | MS.gene24213:intron | 25.0% |
!! | CATTTTGTAAAGTTAGAAAC+AGG | - | chr1.2:1600740-1600759 | None:intergenic | 25.0% |
!!! | AAGCTCAATTTTTCAACTTT+TGG | - | chr1.2:1601227-1601246 | None:intergenic | 25.0% |
!!! | AGCTCAATTTTTCAACTTTT+GGG | - | chr1.2:1601226-1601245 | None:intergenic | 25.0% |
!!! | CAATATTTTTAGAACTCTCA+AGG | + | chr1.2:1600546-1600565 | MS.gene24213:intron | 25.0% |
!!! | CAGGTATTTTAATTTACGAA+GGG | - | chr1.2:1600203-1600222 | None:intergenic | 25.0% |
AAACGCATCAATGAATTTAG+AGG | - | chr1.2:1601314-1601333 | None:intergenic | 30.0% | |
AAACTCCATACTAGTTATGA+TGG | + | chr1.2:1601732-1601751 | MS.gene24213:CDS | 30.0% | |
AAGAAATCAATTAGAAGGAG+TGG | - | chr1.2:1600118-1600137 | None:intergenic | 30.0% | |
ACACTACTTACAATGATATG+AGG | - | chr1.2:1600057-1600076 | None:intergenic | 30.0% | |
ACAGATGAATAATTCATACC+AGG | - | chr1.2:1600222-1600241 | None:intergenic | 30.0% | |
ATAACATCTGGTTAAAGCTA+AGG | - | chr1.2:1601035-1601054 | None:intergenic | 30.0% | |
ATAACTTAAGTACCAACTCT+TGG | + | chr1.2:1601778-1601797 | MS.gene24213:CDS | 30.0% | |
ATATCAAAGAAACTTTGCAG+TGG | + | chr1.2:1600671-1600690 | MS.gene24213:intron | 30.0% | |
ATGAAATCATTTACGGATCT+TGG | + | chr1.2:1599392-1599411 | MS.gene24213:CDS | 30.0% | |
ATGTAGTCCAACTTATGAAT+TGG | + | chr1.2:1600586-1600605 | MS.gene24213:intron | 30.0% | |
CAGAAAGTAACCTACAAATT+AGG | - | chr1.2:1601160-1601179 | None:intergenic | 30.0% | |
CATGTTTCAATAATTGGTGT+GGG | - | chr1.2:1600640-1600659 | None:intergenic | 30.0% | |
CCCAATATAAATGATTGTAG+AGG | - | chr1.2:1600339-1600358 | None:intergenic | 30.0% | |
CCCTCTACAATCATTTATAT+TGG | + | chr1.2:1600335-1600354 | MS.gene24213:intron | 30.0% | |
CCTTCGTAAATTAAAATACC+TGG | + | chr1.2:1600201-1600220 | MS.gene24213:CDS | 30.0% | |
GATAAGAGTTTATATAGAGG+AGG | + | chr1.2:1600396-1600415 | MS.gene24213:intron | 30.0% | |
GTCTTGATGAGTTAATTATG+TGG | + | chr1.2:1601597-1601616 | MS.gene24213:intron | 30.0% | |
GTTAAAGCTAAGGGAAAAAA+GGG | - | chr1.2:1601025-1601044 | None:intergenic | 30.0% | |
GTTGAAAAATTGAGCTTAGA+AGG | + | chr1.2:1601230-1601249 | MS.gene24213:intron | 30.0% | |
TAACATCTGGTTAAAGCTAA+GGG | - | chr1.2:1601034-1601053 | None:intergenic | 30.0% | |
TCTCAAACCAATTCATAAGT+TGG | - | chr1.2:1600596-1600615 | None:intergenic | 30.0% | |
TTGCAACAAGCTATAGAAAA+AGG | - | chr1.2:1599993-1600012 | None:intergenic | 30.0% | |
TTGTTAACAGCGTTTATCAT+TGG | + | chr1.2:1601868-1601887 | MS.gene24213:CDS | 30.0% | |
! | ACAATTGTTGTTGGAAAAGA+GGG | - | chr1.2:1601495-1601514 | None:intergenic | 30.0% |
! | TTGTCGCACTTTTATAAGAA+TGG | + | chr1.2:1601511-1601530 | MS.gene24213:CDS | 30.0% |
! | TTTTGTTCTTCCTATTTTCC+AGG | + | chr1.2:1599643-1599662 | MS.gene24213:CDS | 30.0% |
!! | AACTTTGAAGTTGATGTTGT+TGG | - | chr1.2:1601709-1601728 | None:intergenic | 30.0% |
!! | ACTTTGAAGTTGATGTTGTT+GGG | - | chr1.2:1601708-1601727 | None:intergenic | 30.0% |
!! | AGCAAAGAATGGATTTTGAT+TGG | - | chr1.2:1599687-1599706 | None:intergenic | 30.0% |
!! | GCTCAATTTTTCAACTTTTG+GGG | - | chr1.2:1601225-1601244 | None:intergenic | 30.0% |
!! | TTCATTGACTCCTAATTTGT+AGG | + | chr1.2:1601147-1601166 | MS.gene24213:intron | 30.0% |
!!! | CCAGGTATTTTAATTTACGA+AGG | - | chr1.2:1600204-1600223 | None:intergenic | 30.0% |
!!! | GCAAAGAATGGATTTTGATT+GGG | - | chr1.2:1599686-1599705 | None:intergenic | 30.0% |
!!! | GTTTTGTTTCTACAGATGTT+TGG | + | chr1.2:1600713-1600732 | MS.gene24213:intron | 30.0% |
AAACTTTGCAGTGGTCATAT+AGG | + | chr1.2:1600680-1600699 | MS.gene24213:intron | 35.0% | |
AACAAACAAACCAACCAACT+AGG | + | chr1.2:1599805-1599824 | MS.gene24213:intron | 35.0% | |
AACTCATGCATGTATGGTTT+CGG | + | chr1.2:1601672-1601691 | MS.gene24213:CDS | 35.0% | |
AATAGGAAGAACAAAAGCTC+CGG | - | chr1.2:1599639-1599658 | None:intergenic | 35.0% | |
AATTTACGAAGGGAAAATGC+TGG | - | chr1.2:1600193-1600212 | None:intergenic | 35.0% | |
ACAATGCACAACATAAGCAA+GGG | - | chr1.2:1602045-1602064 | None:intergenic | 35.0% | |
ACACAGATGAACGTGAAATT+TGG | - | chr1.2:1600274-1600293 | None:intergenic | 35.0% | |
ACATGAGAGAAGAGTTACAT+AGG | - | chr1.2:1601450-1601469 | None:intergenic | 35.0% | |
ATAAATGATTGTAGAGGGCA+GGG | - | chr1.2:1600333-1600352 | None:intergenic | 35.0% | |
ATAAATGTTGTCCGGTTACT+AGG | - | chr1.2:1600938-1600957 | None:intergenic | 35.0% | |
ATACGAAACATTGACACAAG+TGG | - | chr1.2:1602143-1602162 | None:intergenic | 35.0% | |
ATGATTATCGCAACTTTGCA+TGG | + | chr1.2:1601994-1602013 | MS.gene24213:CDS | 35.0% | |
ATTTACGAAGGGAAAATGCT+GGG | - | chr1.2:1600192-1600211 | None:intergenic | 35.0% | |
CATGAGAGAAGAGTTACATA+GGG | - | chr1.2:1601449-1601468 | None:intergenic | 35.0% | |
CCAAGTACATATACAGACAA+GGG | - | chr1.2:1600832-1600851 | None:intergenic | 35.0% | |
CGATAATCATATGAGAAGGT+TGG | - | chr1.2:1601984-1602003 | None:intergenic | 35.0% | |
CTAACTCATCCTTACAAACT+CGG | - | chr1.2:1600440-1600459 | None:intergenic | 35.0% | |
CTCACATCATATGACTATCA+AGG | + | chr1.2:1602218-1602237 | MS.gene24213:CDS | 35.0% | |
GAATCATACGGTAGTTGTAA+TGG | + | chr1.2:1601533-1601552 | MS.gene24213:CDS | 35.0% | |
GACAGACAAGGTAAACATAT+AGG | + | chr1.2:1600973-1600992 | MS.gene24213:intron | 35.0% | |
GAGGGATTTGATGTGTATTA+CGG | - | chr1.2:1601477-1601496 | None:intergenic | 35.0% | |
GCATGTTTCAATAATTGGTG+TGG | - | chr1.2:1600641-1600660 | None:intergenic | 35.0% | |
GCTTGTAGGTTACTTGATTA+CGG | + | chr1.2:1601183-1601202 | MS.gene24213:intron | 35.0% | |
GGTTAAAGCTAAGGGAAAAA+AGG | - | chr1.2:1601026-1601045 | None:intergenic | 35.0% | |
GTTGCGATAATCATATGAGA+AGG | - | chr1.2:1601988-1602007 | None:intergenic | 35.0% | |
TACAATGCACAACATAAGCA+AGG | - | chr1.2:1602046-1602065 | None:intergenic | 35.0% | |
TACGAAACATTGACACAAGT+GGG | - | chr1.2:1602142-1602161 | None:intergenic | 35.0% | |
TAGGAAAGATTCCTAGTAAC+CGG | + | chr1.2:1600924-1600943 | MS.gene24213:CDS | 35.0% | |
TATAAATGATTGTAGAGGGC+AGG | - | chr1.2:1600334-1600353 | None:intergenic | 35.0% | |
TATGAAACCAACACAAACCT+TGG | - | chr1.2:1601571-1601590 | None:intergenic | 35.0% | |
TCAAAAGCAAACTTCCTAGT+TGG | - | chr1.2:1599822-1599841 | None:intergenic | 35.0% | |
TCCAAGTACATATACAGACA+AGG | - | chr1.2:1600833-1600852 | None:intergenic | 35.0% | |
TCTTGGCTTATCTCTTCAAT+TGG | + | chr1.2:1599409-1599428 | MS.gene24213:CDS | 35.0% | |
TGAAACAAGGACATATGGAA+TGG | - | chr1.2:1600789-1600808 | None:intergenic | 35.0% | |
TGATAGTCATATGATGTGAG+CGG | - | chr1.2:1602218-1602237 | None:intergenic | 35.0% | |
TGATGGAATTATGAGATCAG+CGG | + | chr1.2:1601749-1601768 | MS.gene24213:CDS | 35.0% | |
TGATTATCGCAACTTTGCAT+GGG | + | chr1.2:1601995-1602014 | MS.gene24213:CDS | 35.0% | |
TGCTATATCTAGAAGGACAT+TGG | - | chr1.2:1601845-1601864 | None:intergenic | 35.0% | |
TGGATTATAAGCAGTTCGTA+CGG | + | chr1.2:1601888-1601907 | MS.gene24213:CDS | 35.0% | |
TTCAGATTCAATGACAGACA+AGG | + | chr1.2:1600961-1600980 | MS.gene24213:CDS | 35.0% | |
TTTAACAGAGCCTGGAAAAT+AGG | - | chr1.2:1599656-1599675 | None:intergenic | 35.0% | |
! | AAAAGTGCGACAATTGTTGT+TGG | - | chr1.2:1601504-1601523 | None:intergenic | 35.0% |
! | AGAGTCTTATCTATCCAATG+TGG | - | chr1.2:1600375-1600394 | None:intergenic | 35.0% |
! | CATAAGTTGGACTACATGAA+CGG | - | chr1.2:1600583-1600602 | None:intergenic | 35.0% |
! | GACAATTGTTGTTGGAAAAG+AGG | - | chr1.2:1601496-1601515 | None:intergenic | 35.0% |
! | GAGTCTTATCTATCCAATGT+GGG | - | chr1.2:1600374-1600393 | None:intergenic | 35.0% |
! | TATGTGCCTCCTTTTCATAA+AGG | - | chr1.2:1601381-1601400 | None:intergenic | 35.0% |
!! | ACAAGAGTGCTATATCTAGA+AGG | - | chr1.2:1601852-1601871 | None:intergenic | 35.0% |
!! | ATTGGTTTGAGAGCTTGAAA+AGG | + | chr1.2:1600604-1600623 | MS.gene24213:intron | 35.0% |
!! | GTTGGTTTGAAATTCCATGT+CGG | - | chr1.2:1600019-1600038 | None:intergenic | 35.0% |
!! | TAGAGACTGAAATTTTGGTG+TGG | + | chr1.2:1601285-1601304 | MS.gene24213:intron | 35.0% |
!! | TGCGTTTTAGATGTGTTCAA+CGG | + | chr1.2:1601327-1601346 | MS.gene24213:intron | 35.0% |
!!! | AAGTTTGCTTTTGAAGTTGC+TGG | + | chr1.2:1599828-1599847 | MS.gene24213:CDS | 35.0% |
!!! | CATAGGGTTTTGTTTCATGA+AGG | - | chr1.2:1601433-1601452 | None:intergenic | 35.0% |
AAAGGAAGAGGATGTTCAGT+TGG | - | chr1.2:1601807-1601826 | None:intergenic | 40.0% | |
AAGAATGGCGATCAAATCCT+TGG | + | chr1.2:1602176-1602195 | MS.gene24213:CDS | 40.0% | |
AAGCAAACTTCCTAGTTGGT+TGG | - | chr1.2:1599818-1599837 | None:intergenic | 40.0% | |
AAGGAAGAGGATGTTCAGTT+GGG | - | chr1.2:1601806-1601825 | None:intergenic | 40.0% | |
ACTTGTGCTTGAATCTTTCG+CGG | - | chr1.2:1599470-1599489 | None:intergenic | 40.0% | |
AGAACCCCACCTTTATGAAA+AGG | + | chr1.2:1601369-1601388 | MS.gene24213:intron | 40.0% | |
AGGTTGCTGTAAAATCTCGT+TGG | - | chr1.2:1600037-1600056 | None:intergenic | 40.0% | |
AGTGGTCATATAGGTGTTAG+GGG | + | chr1.2:1600689-1600708 | MS.gene24213:intron | 40.0% | |
ATCTATCCAATGTGGGACTT+GGG | - | chr1.2:1600367-1600386 | None:intergenic | 40.0% | |
CAGTGGTCATATAGGTGTTA+GGG | + | chr1.2:1600688-1600707 | MS.gene24213:intron | 40.0% | |
CCCTTGTCTGTATATGTACT+TGG | + | chr1.2:1600829-1600848 | MS.gene24213:intron | 40.0% | |
CGAGTTTGTAAGGATGAGTT+AGG | + | chr1.2:1600438-1600457 | MS.gene24213:intron | 40.0% | |
GAAGTGAAATACGTACCTTG+AGG | - | chr1.2:1599723-1599742 | None:intergenic | 40.0% | |
GAGATCACACAAGCAAAGAA+TGG | - | chr1.2:1599698-1599717 | None:intergenic | 40.0% | |
GCTTATAATTCGATTCCAGC+AGG | - | chr1.2:1600877-1600896 | None:intergenic | 40.0% | |
GTGTCAATGTTTCGTATGTG+TGG | + | chr1.2:1602146-1602165 | MS.gene24213:CDS | 40.0% | |
GTTGATGTTGTTGGGATCAT+CGG | - | chr1.2:1601700-1601719 | None:intergenic | 40.0% | |
TAAATGATTGTAGAGGGCAG+GGG | - | chr1.2:1600332-1600351 | None:intergenic | 40.0% | |
TATCTATCCAATGTGGGACT+TGG | - | chr1.2:1600368-1600387 | None:intergenic | 40.0% | |
TCATGAAGGATCATGAGACT+AGG | - | chr1.2:1601419-1601438 | None:intergenic | 40.0% | |
TCATTATCATATGCTGCTGC+TGG | + | chr1.2:1599951-1599970 | MS.gene24213:intron | 40.0% | |
TCTGTATATGTACTTGGACC+AGG | + | chr1.2:1600835-1600854 | MS.gene24213:intron | 40.0% | |
TTAGATGTGTTCAACGGTCT+TGG | + | chr1.2:1601333-1601352 | MS.gene24213:intron | 40.0% | |
TTTACGAAGGGAAAATGCTG+GGG | - | chr1.2:1600191-1600210 | None:intergenic | 40.0% | |
TTTGATCGCCATTCTTCCAA+AGG | - | chr1.2:1602172-1602191 | None:intergenic | 40.0% | |
! | GTGGTCTTAGTAAAAGGAAG+AGG | - | chr1.2:1601819-1601838 | None:intergenic | 40.0% |
! | GTTACTTTCTGTGTGCTTGT+AGG | + | chr1.2:1601169-1601188 | MS.gene24213:intron | 40.0% |
! | TGCCTCCTTTTCATAAAGGT+GGG | - | chr1.2:1601377-1601396 | None:intergenic | 40.0% |
! | TGGCACAAAAAGTGCAACAT+TGG | + | chr1.2:1602116-1602135 | MS.gene24213:CDS | 40.0% |
! | TGGTGTGTGGTCTTAGTAAA+AGG | - | chr1.2:1601825-1601844 | None:intergenic | 40.0% |
!! | AACCAACCTTCTAAAGCAAG+GGG | - | chr1.2:1599497-1599516 | None:intergenic | 40.0% |
!! | ATTTGGGTGATGGATCAAAG+TGG | + | chr1.2:1602092-1602111 | MS.gene24213:CDS | 40.0% |
!! | CAACCAACCTTCTAAAGCAA+GGG | - | chr1.2:1599498-1599517 | None:intergenic | 40.0% |
!!! | GAATGGATTTTGATTGGGTC+CGG | - | chr1.2:1599681-1599700 | None:intergenic | 40.0% |
AACAAAAGCTCCGGTCTTAC+CGG | - | chr1.2:1599630-1599649 | None:intergenic | 45.0% | |
AACCAGTTTCACCAACTCAG+AGG | + | chr1.2:1601957-1601976 | MS.gene24213:CDS | 45.0% | |
AATGGCGATCAAATCCTTGG+AGG | + | chr1.2:1602179-1602198 | MS.gene24213:CDS | 45.0% | |
ACATGCATGAGTTGCTGTCA+AGG | - | chr1.2:1601665-1601684 | None:intergenic | 45.0% | |
ACCAGTTTCACCAACTCAGA+GGG | + | chr1.2:1601958-1601977 | MS.gene24213:CDS | 45.0% | |
ACCCAAATGCTCAAGATGAC+GGG | - | chr1.2:1602080-1602099 | None:intergenic | 45.0% | |
ACCCCACCTTTATGAAAAGG+AGG | + | chr1.2:1601372-1601391 | MS.gene24213:CDS | 45.0% | |
AGCAAGGGAACCTTTGATCT+CGG | - | chr1.2:1602030-1602049 | None:intergenic | 45.0% | |
AGGAAGAGGATGTTCAGTTG+GGG | - | chr1.2:1601805-1601824 | None:intergenic | 45.0% | |
CAAATCCTTGGAGGAAAGGT+TGG | + | chr1.2:1602188-1602207 | MS.gene24213:CDS | 45.0% | |
CACCCAAATGCTCAAGATGA+CGG | - | chr1.2:1602081-1602100 | None:intergenic | 45.0% | |
CATCTTGAGCATTTGGGTGA+TGG | + | chr1.2:1602082-1602101 | MS.gene24213:CDS | 45.0% | |
CCTTACAAGCCGAGTTTGTA+AGG | + | chr1.2:1600428-1600447 | MS.gene24213:intron | 45.0% | |
CGATCAAATCCTTGGAGGAA+AGG | + | chr1.2:1602184-1602203 | MS.gene24213:CDS | 45.0% | |
CTTGTGTGATCTCTTCCTCA+AGG | + | chr1.2:1599705-1599724 | MS.gene24213:CDS | 45.0% | |
GAAAAACCCAAGTCCCACAT+TGG | + | chr1.2:1600358-1600377 | MS.gene24213:intron | 45.0% | |
GACAGCAACTCATGCATGTA+TGG | + | chr1.2:1601666-1601685 | MS.gene24213:CDS | 45.0% | |
GATTGTGTTGCCGAGATCAA+AGG | + | chr1.2:1602017-1602036 | MS.gene24213:CDS | 45.0% | |
GCAGTGGTCATATAGGTGTT+AGG | + | chr1.2:1600687-1600706 | MS.gene24213:intron | 45.0% | |
TCCCGTCATCTTGAGCATTT+GGG | + | chr1.2:1602076-1602095 | MS.gene24213:CDS | 45.0% | |
TCTAGAAGGACATTGGTGTG+TGG | - | chr1.2:1601838-1601857 | None:intergenic | 45.0% | |
TCTGTCTCCAAGGTTTGTGT+TGG | + | chr1.2:1601561-1601580 | MS.gene24213:intron | 45.0% | |
TGTTTCGTATGTGTGGCCTT+TGG | + | chr1.2:1602153-1602172 | MS.gene24213:CDS | 45.0% | |
TTCCAGGCTCTGTTAAATGC+CGG | + | chr1.2:1599659-1599678 | MS.gene24213:CDS | 45.0% | |
! | AAAATGCTGGGGTGTCTTTC+AGG | - | chr1.2:1600180-1600199 | None:intergenic | 45.0% |
! | AATGGCGTTTTCTGTCTCCA+AGG | + | chr1.2:1601551-1601570 | MS.gene24213:CDS | 45.0% |
! | ACAAACTCGGCTTGTAAGGT+GGG | - | chr1.2:1600427-1600446 | None:intergenic | 45.0% |
! | AGGTGTTTGACGAGTTTTCC+AGG | - | chr1.2:1600160-1600179 | None:intergenic | 45.0% |
! | ATGTGTGGCCTTTGGAAGAA+TGG | + | chr1.2:1602161-1602180 | MS.gene24213:CDS | 45.0% |
! | CCTTACAAACTCGGCTTGTA+AGG | - | chr1.2:1600431-1600450 | None:intergenic | 45.0% |
! | GCCTCCTTTTCATAAAGGTG+GGG | - | chr1.2:1601376-1601395 | None:intergenic | 45.0% |
! | GGTTTGAAATTCCATGTCGG+AGG | - | chr1.2:1600016-1600035 | None:intergenic | 45.0% |
! | GTGCCTCCTTTTCATAAAGG+TGG | - | chr1.2:1601378-1601397 | None:intergenic | 45.0% |
! | GTTGGTGAAACTGGTTGTTG+CGG | - | chr1.2:1601953-1601972 | None:intergenic | 45.0% |
! | TACAAACTCGGCTTGTAAGG+TGG | - | chr1.2:1600428-1600447 | None:intergenic | 45.0% |
! | TGAAGTTGCTGGCTACTTTG+AGG | + | chr1.2:1599839-1599858 | MS.gene24213:CDS | 45.0% |
!! | ACCAACCTTCTAAAGCAAGG+GGG | - | chr1.2:1599496-1599515 | None:intergenic | 45.0% |
!! | CCAACCAACCTTCTAAAGCA+AGG | - | chr1.2:1599499-1599518 | None:intergenic | 45.0% |
!! | CCTTGCTTTAGAAGGTTGGT+TGG | + | chr1.2:1599496-1599515 | MS.gene24213:intron | 45.0% |
!! | GACTCCAAAGTGTTGACCTA+GGG | - | chr1.2:1599865-1599884 | None:intergenic | 45.0% |
!! | TGACTCCAAAGTGTTGACCT+AGG | - | chr1.2:1599866-1599885 | None:intergenic | 45.0% |
!! | AAAAAATACAATAAAAATAT+TGG | - | chr1.2:1601110-1601129 | None:intergenic | 5.0% |
AGTTGCTGTCAAGGCAGACT+CGG | - | chr1.2:1601656-1601675 | None:intergenic | 50.0% | |
CTCCCGTCATCTTGAGCATT+TGG | + | chr1.2:1602075-1602094 | MS.gene24213:CDS | 50.0% | |
CTCTTCAAGGTTGTGACTCC+TGG | + | chr1.2:1600139-1600158 | MS.gene24213:intron | 50.0% | |
CTTGGACCAGGTCATAGATG+AGG | + | chr1.2:1600847-1600866 | MS.gene24213:intron | 50.0% | |
GGTGGACCTCTCTAGTTGTT+GGG | - | chr1.2:1601625-1601644 | None:intergenic | 50.0% | |
GTGGAACCCAACAACTAGAG+AGG | + | chr1.2:1601616-1601635 | MS.gene24213:intron | 50.0% | |
GTTCTCCAACCTTTCCTCCA+AGG | - | chr1.2:1602196-1602215 | None:intergenic | 50.0% | |
GTTGACAAGGGAGCTATGCT+TGG | - | chr1.2:1602302-1602321 | None:intergenic | 50.0% | |
TATCATATGCTGCTGCTGGC+TGG | + | chr1.2:1599955-1599974 | MS.gene24213:intron | 50.0% | |
TTCAGTTGGGGTCCAAGAGT+TGG | - | chr1.2:1601793-1601812 | None:intergenic | 50.0% | |
! | CAAACTCGGCTTGTAAGGTG+GGG | - | chr1.2:1600426-1600445 | None:intergenic | 50.0% |
! | GTCATCCCCCTTGCTTTAGA+AGG | + | chr1.2:1599488-1599507 | MS.gene24213:CDS | 50.0% |
! | TGGTGGACCTCTCTAGTTGT+TGG | - | chr1.2:1601626-1601645 | None:intergenic | 50.0% |
!! | GGGTGATGGATCAAAGTGGA+TGG | + | chr1.2:1602096-1602115 | MS.gene24213:CDS | 50.0% |
!! | TCCCCCTTGCTTTAGAAGGT+TGG | + | chr1.2:1599492-1599511 | MS.gene24213:intron | 50.0% |
AAGGCAGACTCGGAGGAACT+TGG | - | chr1.2:1601646-1601665 | None:intergenic | 55.0% | |
CATAGATGAGGCACACCTGC+TGG | + | chr1.2:1600859-1600878 | MS.gene24213:CDS | 55.0% | |
GAGGCCCTAGGTCAACACTT+TGG | + | chr1.2:1599858-1599877 | MS.gene24213:CDS | 55.0% | |
GCCATTTCTCCACCACGTTC+CGG | + | chr1.2:1599608-1599627 | MS.gene24213:CDS | 55.0% | |
GGTGTGCCTCATCTATGACC+TGG | - | chr1.2:1600856-1600875 | None:intergenic | 55.0% | |
GTCCGGCATTTAACAGAGCC+TGG | - | chr1.2:1599664-1599683 | None:intergenic | 55.0% | |
! | ACCGGAACGTGGTGGAGAAA+TGG | - | chr1.2:1599612-1599631 | None:intergenic | 55.0% |
! | AGAAGGTTGGCCCTCTGAGT+TGG | - | chr1.2:1601971-1601990 | None:intergenic | 55.0% |
! | GCTTGTTGCAACCTCCGACA+TGG | + | chr1.2:1600002-1600021 | MS.gene24213:intron | 55.0% |
!! | GCCCTCTGAGTTGGTGAAAC+TGG | - | chr1.2:1601962-1601981 | None:intergenic | 55.0% |
CCACCACGTTCCGGTAAGAC+CGG | + | chr1.2:1599617-1599636 | MS.gene24213:CDS | 60.0% | |
GCAGACTCGGAGGAACTTGG+TGG | - | chr1.2:1601643-1601662 | None:intergenic | 60.0% | |
TGCTGTCAAGGCAGACTCGG+AGG | - | chr1.2:1601653-1601672 | None:intergenic | 60.0% | |
!! | GCTGGCTACTTTGAGGCCCT+AGG | + | chr1.2:1599846-1599865 | MS.gene24213:CDS | 60.0% |
CCGGTCTTACCGGAACGTGG+TGG | - | chr1.2:1599620-1599639 | None:intergenic | 65.0% | |
GCTCCGGTCTTACCGGAACG+TGG | - | chr1.2:1599623-1599642 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 1599392 | 1602325 | 1599392 | ID=MS.gene24213 |
chr1.2 | mRNA | 1599392 | 1602325 | 1599392 | ID=MS.gene24213.t1;Parent=MS.gene24213 |
chr1.2 | exon | 1599392 | 1599509 | 1599392 | ID=MS.gene24213.t1.exon1;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1599392 | 1599509 | 1599392 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1599594 | 1599726 | 1599594 | ID=MS.gene24213.t1.exon2;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1599594 | 1599726 | 1599594 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1599827 | 1599896 | 1599827 | ID=MS.gene24213.t1.exon3;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1599827 | 1599896 | 1599827 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1600003 | 1600065 | 1600003 | ID=MS.gene24213.t1.exon4;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1600003 | 1600065 | 1600003 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1600148 | 1600222 | 1600148 | ID=MS.gene24213.t1.exon5;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1600148 | 1600222 | 1600148 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1600857 | 1600982 | 1600857 | ID=MS.gene24213.t1.exon6;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1600857 | 1600982 | 1600857 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1601371 | 1601572 | 1601371 | ID=MS.gene24213.t1.exon7;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1601371 | 1601572 | 1601371 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
chr1.2 | exon | 1601634 | 1602325 | 1601634 | ID=MS.gene24213.t1.exon8;Parent=MS.gene24213.t1 |
chr1.2 | CDS | 1601634 | 1602325 | 1601634 | ID=cds.MS.gene24213.t1;Parent=MS.gene24213.t1 |
Gene Sequence |
Protein sequence |