AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044425

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044425.t1 MTR_4g109280 68.837 215 63 3 156 368 147 359 1.25e-93 284
MS.gene044425.t1 MTR_6g060650 66.351 211 66 4 158 367 166 372 1.39e-92 282
MS.gene044425.t1 MTR_3g103020 64.220 218 70 5 156 368 164 378 3.32e-87 268
MS.gene044425.t1 MTR_4g117720 63.927 219 67 8 158 368 164 378 1.01e-86 267
MS.gene044425.t1 MTR_3g034180 60.000 220 77 5 157 367 271 488 5.88e-79 250
MS.gene044425.t1 MTR_3g034130 60.870 207 71 3 157 354 157 362 9.46e-79 246
MS.gene044425.t1 MTR_4g109270 60.648 216 74 4 156 368 157 364 8.69e-78 244
MS.gene044425.t1 MTR_4g117850 61.972 213 73 5 156 361 162 373 2.43e-77 243
MS.gene044425.t1 MTR_4g116330 58.257 218 82 5 155 368 168 380 3.21e-75 238
MS.gene044425.t1 MTR_3g034160 59.276 221 79 5 156 367 156 374 5.92e-75 237
MS.gene044425.t1 MTR_4g122850 58.525 217 82 7 157 368 151 364 8.08e-75 236
MS.gene044425.t1 MTR_4g116320 60.185 216 77 6 155 365 44 255 7.01e-74 230
MS.gene044425.t1 MTR_4g094365 57.870 216 80 6 157 368 156 364 3.79e-73 232
MS.gene044425.t1 MTR_4g118380 62.176 193 61 4 158 341 168 357 1.22e-72 230
MS.gene044425.t1 MTR_8g040935 58.333 204 78 4 171 368 6 208 1.71e-69 217
MS.gene044425.t1 MTR_4g023130 56.542 214 77 6 157 367 112 312 1.24e-68 218
MS.gene044425.t1 MTR_8g433030 58.333 216 77 9 155 364 130 338 6.82e-68 217
MS.gene044425.t1 MTR_4g118400 56.158 203 73 4 162 362 106 294 8.54e-68 216
MS.gene044425.t1 MTR_8g032390 58.333 216 77 9 155 364 163 371 3.05e-67 217
MS.gene044425.t1 MTR_4g023080 55.140 214 80 6 157 367 153 353 4.23e-66 213
MS.gene044425.t1 MTR_4g023090 51.121 223 87 5 156 363 164 379 7.53e-66 213
MS.gene044425.t1 MTR_4g117780 54.378 217 90 3 156 368 156 367 7.20e-65 210
MS.gene044425.t1 MTR_4g109250 80.667 150 17 2 7 156 1 138 5.13e-64 202
MS.gene044425.t1 MTR_4g021785 52.804 214 88 4 157 368 153 355 1.55e-63 206
MS.gene044425.t1 MTR_4g117770 53.456 217 92 3 156 368 156 367 1.63e-62 204
MS.gene044425.t1 MTR_4g117810 53.456 217 92 3 156 368 156 367 1.63e-62 204
MS.gene044425.t1 MTR_5g070130 50.459 218 98 4 157 365 157 373 2.48e-61 202
MS.gene044425.t1 MTR_1g055195 51.598 219 87 5 158 368 271 478 2.87e-61 204
MS.gene044425.t1 MTR_6g463430 53.125 192 83 2 179 368 16 202 7.27e-61 194
MS.gene044425.t1 MTR_5g097210 55.981 209 85 6 158 362 152 357 2.76e-60 199
MS.gene044425.t1 MTR_4g023380 49.780 227 81 5 167 368 161 379 1.09e-59 197
MS.gene044425.t1 MTR_8g433040 52.778 216 83 7 157 368 164 364 4.43e-59 195
MS.gene044425.t1 MTR_8g032380 52.778 216 83 7 157 368 164 364 4.43e-59 195
MS.gene044425.t1 MTR_4g023070 48.018 227 98 5 157 367 147 369 8.49e-59 195
MS.gene044425.t1 MTR_1g055175 52.736 201 84 8 175 368 5 201 2.79e-56 183
MS.gene044425.t1 MTR_4g023120 46.491 228 102 5 157 368 147 370 3.57e-56 188
MS.gene044425.t1 MTR_5g070080 51.905 210 96 4 158 365 176 382 3.60e-56 188
MS.gene044425.t1 MTR_4g117750 50.463 216 95 5 157 362 140 353 4.70e-55 188
MS.gene044425.t1 MTR_4g117750 65.094 106 35 1 260 363 373 478 1.67e-37 141
MS.gene044425.t1 MTR_4g023190 47.451 255 111 10 121 366 117 357 5.80e-54 182
MS.gene044425.t1 MTR_4g023200 45.669 254 118 9 121 366 117 358 3.28e-53 180
MS.gene044425.t1 MTR_1g055135 38.000 350 163 13 66 368 33 375 5.86e-53 179
MS.gene044425.t1 MTR_4g116330 48.624 218 64 5 155 368 168 341 7.95e-53 178
MS.gene044425.t1 MTR_4g023440 46.262 214 68 5 157 368 164 332 1.20e-52 177
MS.gene044425.t1 MTR_4g118370 49.761 209 81 6 158 362 66 254 1.25e-52 175
MS.gene044425.t1 MTR_4g117870 47.418 213 73 6 157 368 93 267 1.28e-51 173
MS.gene044425.t1 MTR_8g102520 46.759 216 106 6 159 368 110 322 2.00e-51 174
MS.gene044425.t1 MTR_5g070088 45.498 211 112 2 158 365 172 382 3.82e-51 175
MS.gene044425.t1 MTR_7g079400 43.891 221 111 6 158 368 120 337 7.48e-50 171
MS.gene044425.t1 MTR_4g023150 45.276 254 119 9 121 366 117 358 9.34e-50 171
MS.gene044425.t1 MTR_1g055165 56.627 166 64 6 207 368 157 318 2.10e-49 169
MS.gene044425.t1 MTR_1g055250 49.020 204 92 9 157 355 57 253 1.37e-48 167
MS.gene044425.t1 MTR_4g117530 44.131 213 79 5 156 368 81 253 2.29e-45 156
MS.gene044425.t1 MTR_4g118360 64.655 116 37 2 255 368 13 126 3.20e-44 149
MS.gene044425.t1 MTR_7g079370 43.779 217 107 6 158 364 141 352 4.25e-43 153
MS.gene044425.t1 MTR_4g114700 39.904 208 74 4 156 359 58 218 1.62e-38 138
MS.gene044425.t1 MTR_8g098830 47.273 165 78 6 179 338 35 195 5.41e-38 136
MS.gene044425.t1 MTR_5g023000 64.894 94 33 0 275 368 6 99 9.77e-37 129
MS.gene044425.t1 MTR_4g121580 45.192 208 73 10 158 358 166 339 3.67e-36 135
MS.gene044425.t1 MTR_2g048580 37.000 200 101 6 179 368 158 342 1.83e-35 132
MS.gene044425.t1 MTR_4g122860 40.092 217 90 8 164 368 132 320 3.16e-35 132
MS.gene044425.t1 MTR_7g079450 46.809 141 69 3 229 368 2 137 1.04e-31 117
MS.gene044425.t1 MTR_7g079420 41.848 184 91 8 195 368 967 1144 1.08e-31 127
MS.gene044425.t1 MTR_4g117430 56.522 115 40 3 158 272 51 155 9.68e-31 115
MS.gene044425.t1 MTR_8g013010 56.250 112 42 3 158 269 205 309 1.47e-30 119
MS.gene044425.t1 MTR_4g116340 63.291 79 27 2 156 234 171 247 1.53e-24 100
MS.gene044425.t1 MTR_7g117720 58.140 86 32 2 281 362 186 271 1.97e-21 93.2
MS.gene044425.t1 MTR_4g023430 54.321 81 34 1 291 368 142 222 8.65e-21 90.1
MS.gene044425.t1 MTR_4g122840 41.176 136 43 3 235 368 164 264 1.31e-19 87.8
MS.gene044425.t1 MTR_8g013005 62.712 59 22 0 310 368 1 59 9.81e-19 79.7
MS.gene044425.t1 MTR_4g111890 51.807 83 37 3 53 132 1 83 4.72e-17 78.6
MS.gene044425.t1 MTR_4g113405 44.000 125 60 6 7 122 1 124 6.65e-17 77.4
MS.gene044425.t1 MTR_6g034720 46.875 96 47 3 158 252 82 174 1.67e-16 78.2
MS.gene044425.t1 MTR_4g109290 50.000 74 28 1 304 368 115 188 2.11e-13 68.6
MS.gene044425.t1 MTR_1g094210 29.648 199 111 9 158 337 188 376 1.73e-12 68.6
MS.gene044425.t1 MTR_2g028160 30.688 189 110 11 155 329 170 351 8.15e-12 66.6
MS.gene044425.t1 MTR_1g094210 27.477 222 131 10 158 360 188 398 1.19e-11 65.9
MS.gene044425.t1 MTR_1g055145 47.297 74 36 2 212 284 131 202 5.40e-11 63.2
MS.gene044425.t1 MTR_3g010970 27.861 201 121 8 170 360 205 391 7.30e-11 63.5
MS.gene044425.t1 MTR_6g021880 29.814 161 104 4 155 310 173 329 9.26e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTGCCTTTGACTTAA+TGG 0.096475 8.1:+16343785 MS.gene044425:CDS
TATTATGACTTGTGGGTATT+TGG 0.144797 8.1:+16343864 MS.gene044425:CDS
TTGTTGTGATCCACAAAATA+TGG 0.242038 8.1:-16339962 None:intergenic
GGCATTTCTACTTGCATTCA+TGG 0.248792 8.1:+16339856 MS.gene044425:CDS
TATTCATGAGAGTTCAAATA+AGG 0.251780 8.1:-16343687 None:intergenic
ATGAAGAAATAGTTGAAATA+TGG 0.258814 8.1:+16343913 MS.gene044425:CDS
AGAGCAGGGTTCCTCTTTAA+TGG 0.277860 8.1:+16343717 MS.gene044425:CDS
TTGTGATATTCATATGGATA+TGG 0.284356 8.1:+16340045 MS.gene044425:CDS
GCATGATTGGGTTGTGGCTT+TGG 0.295407 8.1:-16341887 None:intergenic
GAGCAGGGTTCCTCTTTAAT+GGG 0.298920 8.1:+16343718 MS.gene044425:CDS
TCAGTTAAGAGATGATTATT+TGG 0.303270 8.1:+16343557 MS.gene044425:intron
ACTCTTGTCCTTCCTATTGA+TGG 0.321860 8.1:+16343975 MS.gene044425:CDS
CATGATTGGGTTGTGGCTTT+GGG 0.329561 8.1:-16341886 None:intergenic
TCTTTAATGGGGCTATTCAT+TGG 0.331439 8.1:+16343730 MS.gene044425:CDS
ACCCACAAGTCATAATAATT+AGG 0.339487 8.1:-16343858 None:intergenic
TCCACATGGATTGTTGAAAT+AGG 0.371891 8.1:-16344117 None:intergenic
ATGAAGTTGCCTGCTGTTTG+TGG 0.381335 8.1:+16340097 MS.gene044425:CDS
CTGCATTTGTGATATTCATA+TGG 0.391875 8.1:+16340039 MS.gene044425:CDS
TGATCATAATTATTCACGTT+TGG 0.393675 8.1:+16343611 MS.gene044425:CDS
TGGGGAACTTTGAGCATGAT+TGG 0.396691 8.1:-16341900 None:intergenic
TCTGTTGCAGCAACTGCTTC+CGG 0.412296 8.1:+16340016 MS.gene044425:CDS
TGCTACAGCTGCTCCATCCT+CGG 0.415033 8.1:+16340235 MS.gene044425:CDS
TAATGGGGCTATTCATTGGT+TGG 0.427301 8.1:+16343734 MS.gene044425:CDS
GGGGAACTTTGAGCATGATT+GGG 0.436706 8.1:-16341899 None:intergenic
ATTCATGAGAGTTCAAATAA+GGG 0.442949 8.1:-16343686 None:intergenic
ACTTGAACTGGTACTGATGC+TGG 0.443530 8.1:-16341920 None:intergenic
CTTTGAGCATGATTGGGTTG+TGG 0.444918 8.1:-16341893 None:intergenic
TGAGTTGGAATGCCATCAAT+AGG 0.444967 8.1:-16343987 None:intergenic
ATCCTAATTATTATGACTTG+TGG 0.450172 8.1:+16343856 MS.gene044425:CDS
TCCTAATTATTATGACTTGT+GGG 0.453742 8.1:+16343857 MS.gene044425:CDS
TGAAGAAATAGTTGAAATAT+GGG 0.457924 8.1:+16343914 MS.gene044425:CDS
ATCGATCTGCAGTTCATAGT+TGG 0.478827 8.1:-16339911 None:intergenic
AGTCATAATAATTAGGATCA+TGG 0.483187 8.1:-16343851 None:intergenic
AATACAAAGTGCATTCGTCT+TGG 0.494278 8.1:+16343946 MS.gene044425:CDS
CATGAATATAATCCTAGAGC+AGG 0.500843 8.1:+16343702 MS.gene044425:CDS
GAGACTCTGCTTTCACTCCC+TGG 0.504016 8.1:+16344161 MS.gene044425:CDS
TAAGCTTGCTCATTGCCACC+AGG 0.505650 8.1:-16344179 None:intergenic
CTCAGTATACATAGCCGCTC+GGG 0.506020 8.1:-16344141 None:intergenic
ATCATCTTTGTGTTATCCAA+CGG 0.508921 8.1:-16340076 None:intergenic
GTTAAGAGATGATTATTTGG+TGG 0.511249 8.1:+16343560 MS.gene044425:intron
ATCGGAACAGATGGTGGTAA+TGG 0.511515 8.1:+16344050 MS.gene044425:CDS
GCTACAGCTGCTCCATCCTC+GGG 0.517514 8.1:+16340236 MS.gene044425:CDS
CTGCAGTTCATAGTTGGAGT+TGG 0.520084 8.1:-16339905 None:intergenic
AATGAATAGCCCCATTAAAG+AGG 0.526680 8.1:-16343728 None:intergenic
TTCAATCTACTATGATTCAT+CGG 0.538809 8.1:+16343584 MS.gene044425:CDS
TTGGTGAAGTACGATGAAAA+TGG 0.539569 8.1:+16344074 MS.gene044425:CDS
CTTGAACTGGTACTGATGCT+GGG 0.542768 8.1:-16341919 None:intergenic
TTAAAGAGGAACCCTGCTCT+AGG 0.544781 8.1:-16343714 None:intergenic
ATCGATCATGAATGATATGA+TGG 0.549337 8.1:+16339928 MS.gene044425:CDS
GGCTTTGGGCTACTCTGTGA+AGG 0.550181 8.1:-16341872 None:intergenic
TTAATTTACATACCCGAGGA+TGG 0.550634 8.1:-16340248 None:intergenic
ATGAATATCACAAATGCAGC+CGG 0.552626 8.1:-16340035 None:intergenic
TTCTCTAAAGCATATGACTC+AGG 0.558704 8.1:-16341824 None:intergenic
AATGGGTAGAAGTACTGAGT+TGG 0.583626 8.1:-16344002 None:intergenic
GGTGATATTATCGGAACAGA+TGG 0.584795 8.1:+16344041 MS.gene044425:CDS
TCTCAGTATACATAGCCGCT+CGG 0.591276 8.1:-16344142 None:intergenic
TTAAATATTTACAGTGACAA+GGG 0.598831 8.1:-16340129 None:intergenic
AACAGATGGTGGTAATGGAT+TGG 0.600231 8.1:+16344055 MS.gene044425:CDS
GTTAAATATTTACAGTGACA+AGG 0.601808 8.1:-16340130 None:intergenic
AGTGAGACTCCACAAACAGC+AGG 0.605216 8.1:-16340106 None:intergenic
GATATTATCGGAACAGATGG+TGG 0.612210 8.1:+16344044 MS.gene044425:CDS
TTGGAATGCCATCAATAGGA+AGG 0.614361 8.1:-16343983 None:intergenic
TCCTATTTCAACAATCCATG+TGG 0.619417 8.1:+16344116 MS.gene044425:CDS
AAGCTTGCTCATTGCCACCA+GGG 0.620136 8.1:-16344178 None:intergenic
TTGAACTGGTACTGATGCTG+GGG 0.625070 8.1:-16341918 None:intergenic
GGTGCAAACAAAGCATTCGA+TGG 0.625812 8.1:-16339884 None:intergenic
AGCAGGGTTCCTCTTTAATG+GGG 0.628387 8.1:+16343719 MS.gene044425:CDS
GATTCAAAAGCAGAGCAACA+TGG 0.634078 8.1:-16339995 None:intergenic
ATGAATATAATCCTAGAGCA+GGG 0.656005 8.1:+16343703 MS.gene044425:CDS
ATAGCCGCTCGGGATCCACA+TGG 0.663607 8.1:-16344131 None:intergenic
TCTCATTGAGAGATAATACG+TGG 0.669859 8.1:+16343640 MS.gene044425:CDS
ACTCTGCTTTCACTCCCTGG+TGG 0.675119 8.1:+16344164 MS.gene044425:CDS
CAATCCATGTGGATCCCGAG+CGG 0.707972 8.1:+16344127 MS.gene044425:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTAATTGATATAAAAAT+TGG - chr8.1:16342293-16342312 None:intergenic 10.0%
!!! AAAATATATTTTCTCTTTTT+GGG - chr8.1:16341107-16341126 None:intergenic 10.0%
!! AACAATCAACAATATAATTT+GGG + chr8.1:16340302-16340321 MS.gene044425:intron 15.0%
!! ATAAATTGAATTTGAATGAT+AGG - chr8.1:16341586-16341605 None:intergenic 15.0%
!! ATATAGATAACAGAAATATT+TGG - chr8.1:16343523-16343542 None:intergenic 15.0%
!! TCATGTTAAGATATTAAAAA+AGG - chr8.1:16342822-16342841 None:intergenic 15.0%
!!! AAATATTTCTGTTATCTATA+TGG + chr8.1:16343522-16343541 MS.gene044425:intron 15.0%
!!! ATTGTTTTTTAGCTTATATT+TGG + chr8.1:16340523-16340542 MS.gene044425:intron 15.0%
!!! CAAAATATATTTTCTCTTTT+TGG - chr8.1:16341108-16341127 None:intergenic 15.0%
!!! TGAAAGCAAATAATTTTTTT+AGG - chr8.1:16342443-16342462 None:intergenic 15.0%
!!! TTAAAAATAAAAAAAGTGCA+TGG - chr8.1:16341169-16341188 None:intergenic 15.0%
!! AAAGTTAATGTGTTTATAAG+TGG - chr8.1:16341333-16341352 None:intergenic 20.0%
!! ATACTTTACATTGCATATAT+GGG + chr8.1:16341617-16341636 MS.gene044425:intron 20.0%
!! ATGAAGAAATAGTTGAAATA+TGG + chr8.1:16343913-16343932 MS.gene044425:CDS 20.0%
!! ATGATAGTACTGTAATTAAT+TGG + chr8.1:16342383-16342402 MS.gene044425:intron 20.0%
!! CAAAAAACCAATAAGAAAAA+GGG - chr8.1:16341970-16341989 None:intergenic 20.0%
!! CAACAATCAACAATATAATT+TGG + chr8.1:16340301-16340320 MS.gene044425:intron 20.0%
!! TAGCTTATATTTGGATTAAA+TGG + chr8.1:16340532-16340551 MS.gene044425:intron 20.0%
!! TATACTTTACATTGCATATA+TGG + chr8.1:16341616-16341635 MS.gene044425:intron 20.0%
!! TGAAGAAATAGTTGAAATAT+GGG + chr8.1:16343914-16343933 MS.gene044425:CDS 20.0%
!! TTAAATATTTACAGTGACAA+GGG - chr8.1:16340132-16340151 None:intergenic 20.0%
!! TTGCGATAATAATAATCATA+TGG + chr8.1:16341987-16342006 MS.gene044425:intron 20.0%
!!! AATTTTAGATACACTACAAT+AGG + chr8.1:16340801-16340820 MS.gene044425:intron 20.0%
!!! ATCAATTGTTTCTTGTAAAT+AGG - chr8.1:16342596-16342615 None:intergenic 20.0%
!!! ATTACTTTTCCAAGAATTTA+TGG + chr8.1:16341774-16341793 MS.gene044425:intron 20.0%
!!! CTATTGAATTGTTATTATCT+TGG + chr8.1:16340590-16340609 MS.gene044425:intron 20.0%
!!! TAATTAATTGGTGGATTTAT+AGG + chr8.1:16342395-16342414 MS.gene044425:intron 20.0%
!!! TGAGTTCTATGATTATTTTT+TGG + chr8.1:16342509-16342528 MS.gene044425:intron 20.0%
! AAAATGTGAATTAGCAAAGT+GGG - chr8.1:16343241-16343260 None:intergenic 25.0%
! AAAATTGAAGCAAAGGTAAA+AGG - chr8.1:16340787-16340806 None:intergenic 25.0%
! ACAAAAAGTGGTGATATTAT+CGG + chr8.1:16344032-16344051 MS.gene044425:CDS 25.0%
! ACATAACAACCATAAATTCT+TGG - chr8.1:16341786-16341805 None:intergenic 25.0%
! AGTCATAATAATTAGGATCA+TGG - chr8.1:16343854-16343873 None:intergenic 25.0%
! ATAATTAATTTACATACCCG+AGG - chr8.1:16340255-16340274 None:intergenic 25.0%
! ATAGTACTGTAATTAATTGG+TGG + chr8.1:16342386-16342405 MS.gene044425:intron 25.0%
! ATATGCAATGTAAAGTATAG+TGG - chr8.1:16341615-16341634 None:intergenic 25.0%
! ATCCTAATTATTATGACTTG+TGG + chr8.1:16343856-16343875 MS.gene044425:CDS 25.0%
! ATTCATGAGAGTTCAAATAA+GGG - chr8.1:16343689-16343708 None:intergenic 25.0%
! ATTGAATTTGAATGATAGGA+TGG - chr8.1:16341582-16341601 None:intergenic 25.0%
! ATTTGAATCATCAATTCATG+AGG - chr8.1:16343141-16343160 None:intergenic 25.0%
! CATTCTGATCTTGAAATTAA+AGG + chr8.1:16343396-16343415 MS.gene044425:intron 25.0%
! GCAAAAAACCAATAAGAAAA+AGG - chr8.1:16341971-16341990 None:intergenic 25.0%
! GGTTATGTTAGATTATAACA+TGG + chr8.1:16341019-16341038 MS.gene044425:intron 25.0%
! GTAAACTTTCTCTTGTAAAT+AGG + chr8.1:16342695-16342714 MS.gene044425:intron 25.0%
! GTTAAATATTTACAGTGACA+AGG - chr8.1:16340133-16340152 None:intergenic 25.0%
! TAAAAACATCTCACATATGA+AGG - chr8.1:16341363-16341382 None:intergenic 25.0%
! TAAAGAACATGTCAAACAAA+AGG - chr8.1:16342202-16342221 None:intergenic 25.0%
! TATTCATGAGAGTTCAAATA+AGG - chr8.1:16343690-16343709 None:intergenic 25.0%
! TCAGTTAAGAGATGATTATT+TGG + chr8.1:16343557-16343576 MS.gene044425:intron 25.0%
! TCATGGTAAAAAATATCATC+CGG - chr8.1:16343837-16343856 None:intergenic 25.0%
! TCTGTTATCTATATGGATTT+GGG + chr8.1:16343529-16343548 MS.gene044425:intron 25.0%
! TGATCATAATTATTCACGTT+TGG + chr8.1:16343611-16343630 MS.gene044425:CDS 25.0%
! TTAATGTGTTTATAAGTGGT+GGG - chr8.1:16341329-16341348 None:intergenic 25.0%
! TTCAATCTACTATGATTCAT+CGG + chr8.1:16343584-16343603 MS.gene044425:CDS 25.0%
! TTCTGTTATCTATATGGATT+TGG + chr8.1:16343528-16343547 MS.gene044425:intron 25.0%
! TTGAATTTGAATGATAGGAT+GGG - chr8.1:16341581-16341600 None:intergenic 25.0%
! TTGTGATATTCATATGGATA+TGG + chr8.1:16340045-16340064 MS.gene044425:CDS 25.0%
! TTTATAGGCTCAAACTTATT+TGG + chr8.1:16342410-16342429 MS.gene044425:intron 25.0%
!! AATGTAAAGTATAGTGGAAT+AGG - chr8.1:16341609-16341628 None:intergenic 25.0%
!! ACTTTTAGATATACATTTGC+CGG + chr8.1:16343815-16343834 MS.gene044425:CDS 25.0%
!! CAGAAATATTTGGAATCATT+AGG - chr8.1:16343513-16343532 None:intergenic 25.0%
!! CATTTTTCCCTTTTTCTTAT+TGG + chr8.1:16341960-16341979 MS.gene044425:intron 25.0%
!! GAAAACTTTTGTTACTGTTT+TGG + chr8.1:16339835-16339854 MS.gene044425:CDS 25.0%
!! TATAATCCTTTAGGTTAGTT+TGG - chr8.1:16342090-16342109 None:intergenic 25.0%
!! TATTATTGCCTTTGACTTAA+TGG + chr8.1:16343785-16343804 MS.gene044425:CDS 25.0%
!! TCCTAATTATTATGACTTGT+GGG + chr8.1:16343857-16343876 MS.gene044425:CDS 25.0%
!! TGTATCTAAAATTGAAGCAA+AGG - chr8.1:16340794-16340813 None:intergenic 25.0%
!! TTCACTAAACCTTAGATTTT+TGG + chr8.1:16343362-16343381 MS.gene044425:intron 25.0%
!! TTCATTTGATTGTTGTTACA+TGG + chr8.1:16340498-16340517 MS.gene044425:intron 25.0%
!! TTTTATCATCTTACACTAGT+GGG + chr8.1:16340699-16340718 MS.gene044425:intron 25.0%
!!! ATTTGTTTTATTCACTTCCT+TGG + chr8.1:16340413-16340432 MS.gene044425:intron 25.0%
AAACGAGCGATAAAATCAAT+AGG - chr8.1:16342319-16342338 None:intergenic 30.0%
AACTGATATGTGTCATAGAT+CGG - chr8.1:16340369-16340388 None:intergenic 30.0%
AATAGGAAGTGACATTATTG+TGG + chr8.1:16340818-16340837 MS.gene044425:intron 30.0%
ACAAATGCAATCACATGTAT+CGG - chr8.1:16340399-16340418 None:intergenic 30.0%
ACCCACAAGTCATAATAATT+AGG - chr8.1:16343861-16343880 None:intergenic 30.0%
AGAAAAAGGGAAAAATGATC+CGG - chr8.1:16341957-16341976 None:intergenic 30.0%
ATACTATATAGTACTCCATC+CGG + chr8.1:16342569-16342588 MS.gene044425:intron 30.0%
ATAGGAAGTGACATTATTGT+GGG + chr8.1:16340819-16340838 MS.gene044425:intron 30.0%
ATATACGAACAACTCAAAAG+AGG - chr8.1:16341266-16341285 None:intergenic 30.0%
ATCATCTTTGTGTTATCCAA+CGG - chr8.1:16340079-16340098 None:intergenic 30.0%
ATCGATCATGAATGATATGA+TGG + chr8.1:16339928-16339947 MS.gene044425:CDS 30.0%
ATGAATATAATCCTAGAGCA+GGG + chr8.1:16343703-16343722 MS.gene044425:CDS 30.0%
ATGTCAAACAAAAGGCAAAA+AGG - chr8.1:16342194-16342213 None:intergenic 30.0%
CAAAAATATAAAGCCTCTAC+AGG - chr8.1:16343424-16343443 None:intergenic 30.0%
CTAGTACTTTGGACTAATTA+TGG + chr8.1:16341701-16341720 MS.gene044425:intron 30.0%
CTGCATTTGTGATATTCATA+TGG + chr8.1:16340039-16340058 MS.gene044425:CDS 30.0%
CTTTCTCTTGTAAATAGGAT+CGG + chr8.1:16342700-16342719 MS.gene044425:intron 30.0%
GAAAATGTGAATTAGCAAAG+TGG - chr8.1:16343242-16343261 None:intergenic 30.0%
GTTAAGAGATGATTATTTGG+TGG + chr8.1:16343560-16343579 MS.gene044425:intron 30.0%
GTTAATGTGTTTATAAGTGG+TGG - chr8.1:16341330-16341349 None:intergenic 30.0%
TAAATCTACAATACCACTCT+TGG - chr8.1:16340649-16340668 None:intergenic 30.0%
TAATGTGTTTATAAGTGGTG+GGG - chr8.1:16341328-16341347 None:intergenic 30.0%
TATAACTCAAAGGATGACAA+AGG + chr8.1:16342123-16342142 MS.gene044425:intron 30.0%
TCAAATCTGTTTGTAAGTCT+TGG + chr8.1:16343196-16343215 MS.gene044425:intron 30.0%
TCGCATGATTATAATCCTTT+AGG - chr8.1:16342099-16342118 None:intergenic 30.0%
TCTAACATAACCAATTACGA+CGG - chr8.1:16341011-16341030 None:intergenic 30.0%
TGATGATTCAAATCCTACTA+AGG + chr8.1:16343148-16343167 MS.gene044425:intron 30.0%
TTCAAGATCAGAATGAGATT+GGG - chr8.1:16343391-16343410 None:intergenic 30.0%
TTGTTGTGATCCACAAAATA+TGG - chr8.1:16339965-16339984 None:intergenic 30.0%
TTTCAAGATCAGAATGAGAT+TGG - chr8.1:16343392-16343411 None:intergenic 30.0%
! AACTCGTTCTATAGATTTTG+AGG + chr8.1:16343320-16343339 MS.gene044425:intron 30.0%
! AATGGTTCAAAATTTTGGAC+GGG - chr8.1:16341294-16341313 None:intergenic 30.0%
! ACTTCATTTTCATGATACAG+TGG + chr8.1:16340211-16340230 MS.gene044425:intron 30.0%
! AGATGGATTCCATAGATAAA+AGG - chr8.1:16343460-16343479 None:intergenic 30.0%
! AGTCCAATGGTTCAAAATTT+TGG - chr8.1:16341299-16341318 None:intergenic 30.0%
! CAATGGTTCAAAATTTTGGA+CGG - chr8.1:16341295-16341314 None:intergenic 30.0%
! CGAGTGTTATTAACATGTAA+AGG - chr8.1:16342355-16342374 None:intergenic 30.0%
! CTTTTATCATCTTACACTAG+TGG + chr8.1:16340698-16340717 MS.gene044425:intron 30.0%
! GTTCTTTAACTTTGTCTATG+TGG + chr8.1:16342214-16342233 MS.gene044425:intron 30.0%
! TATTATGACTTGTGGGTATT+TGG + chr8.1:16343864-16343883 MS.gene044425:CDS 30.0%
! TGAATGTCTTCCATATTTTG+TGG + chr8.1:16339952-16339971 MS.gene044425:CDS 30.0%
! TTGATTTTATCGCTCGTTTA+TGG + chr8.1:16342320-16342339 MS.gene044425:intron 30.0%
! TTGTTTCTTGTAAATAGGAC+CGG - chr8.1:16342591-16342610 None:intergenic 30.0%
!! GAGACAAAGGTATTTGTTTA+TGG - chr8.1:16343491-16343510 None:intergenic 30.0%
!! TATATGGTTGATAGAGGATA+TGG - chr8.1:16340902-16340921 None:intergenic 30.0%
!!! AGATGTTTTTAGTTTCCAAC+CGG + chr8.1:16341372-16341391 MS.gene044425:intron 30.0%
!!! TCATCAGATTTTGACTCTAT+TGG - chr8.1:16341729-16341748 None:intergenic 30.0%
!!! TCTCCATATTTTGACCTTTT+CGG + chr8.1:16341443-16341462 MS.gene044425:intron 30.0%
AAAAATGCTACATCTCCTTC+TGG - chr8.1:16341549-16341568 None:intergenic 35.0%
AAACGTATAAGAGACTTCAC+GGG - chr8.1:16343177-16343196 None:intergenic 35.0%
AATACAAAGTGCATTCGTCT+TGG + chr8.1:16343946-16343965 MS.gene044425:CDS 35.0%
AATGAATAGCCCCATTAAAG+AGG - chr8.1:16343731-16343750 None:intergenic 35.0%
ACATTCTTAATGATGCCAGA+AGG + chr8.1:16341531-16341550 MS.gene044425:intron 35.0%
AGAAGCTGAAATGAAGATCA+AGG - chr8.1:16342940-16342959 None:intergenic 35.0%
AGGCTCAAACTTATTTGGTA+TGG + chr8.1:16342415-16342434 MS.gene044425:intron 35.0%
AGGTGAACTGAACAATAGAA+AGG - chr8.1:16342902-16342921 None:intergenic 35.0%
AGTGTCTCTTGTGCTAATTT+GGG - chr8.1:16342045-16342064 None:intergenic 35.0%
ATACCACCAAACTAACCTAA+AGG + chr8.1:16342081-16342100 MS.gene044425:intron 35.0%
ATAGAACGAGTTTCAAGATC+TGG - chr8.1:16343312-16343331 None:intergenic 35.0%
ATAGTATCAATGCACGTTGT+CGG - chr8.1:16341146-16341165 None:intergenic 35.0%
ATGAATATCACAAATGCAGC+CGG - chr8.1:16340038-16340057 None:intergenic 35.0%
ATGCCAAAAAGTCCTTCAAA+AGG + chr8.1:16340844-16340863 MS.gene044425:intron 35.0%
ATTGGGGATCCAAAAATCTA+AGG - chr8.1:16343374-16343393 None:intergenic 35.0%
CATGAATATAATCCTAGAGC+AGG + chr8.1:16343702-16343721 MS.gene044425:CDS 35.0%
GAAAAAGGGAAAAATGATCC+GGG - chr8.1:16341956-16341975 None:intergenic 35.0%
GAAACGTATAAGAGACTTCA+CGG - chr8.1:16343178-16343197 None:intergenic 35.0%
GAAATACGTACGAGCATATA+TGG - chr8.1:16340918-16340937 None:intergenic 35.0%
GAAATGAAGATCAAGGAAGA+AGG - chr8.1:16342933-16342952 None:intergenic 35.0%
GAAATTAAAGGTTCCTGTAG+AGG + chr8.1:16343408-16343427 MS.gene044425:intron 35.0%
GAATGAGAATTGACAAAGTG+TGG - chr8.1:16342160-16342179 None:intergenic 35.0%
TATCTATGGAATCCATCTAC+TGG + chr8.1:16343462-16343481 MS.gene044425:intron 35.0%
TCAAGATCAGAATGAGATTG+GGG - chr8.1:16343390-16343409 None:intergenic 35.0%
TCCTATTTCAACAATCCATG+TGG + chr8.1:16344116-16344135 MS.gene044425:CDS 35.0%
TCTCATTGAGAGATAATACG+TGG + chr8.1:16343640-16343659 MS.gene044425:CDS 35.0%
TCTTTAATGGGGCTATTCAT+TGG + chr8.1:16343730-16343749 MS.gene044425:CDS 35.0%
TGGACTTCATCAAAATCTAG+AGG + chr8.1:16341039-16341058 MS.gene044425:intron 35.0%
TTAATTTACATACCCGAGGA+TGG - chr8.1:16340251-16340270 None:intergenic 35.0%
TTGGAATCATTAGGAGACAA+AGG - chr8.1:16343504-16343523 None:intergenic 35.0%
TTGGTGAAGTACGATGAAAA+TGG + chr8.1:16344074-16344093 MS.gene044425:CDS 35.0%
! CGTCCAAAATTTTGAACCAT+TGG + chr8.1:16341293-16341312 MS.gene044425:intron 35.0%
! GCTCTTCAACCTTTTATCTA+TGG + chr8.1:16343448-16343467 MS.gene044425:intron 35.0%
! GTATTGACGAACATCAAACA+CGG - chr8.1:16340455-16340474 None:intergenic 35.0%
! TACGAAGAATGTCCTTTTGA+AGG - chr8.1:16340859-16340878 None:intergenic 35.0%
! TCCACATGGATTGTTGAAAT+AGG - chr8.1:16344120-16344139 None:intergenic 35.0%
! TCTGGTTTGTGTTTATAGTG+TGG + chr8.1:16341071-16341090 MS.gene044425:intron 35.0%
! TGGAGATTTTCTCAGTCTAT+GGG + chr8.1:16343884-16343903 MS.gene044425:CDS 35.0%
! TTGGAGATTTTCTCAGTCTA+TGG + chr8.1:16343883-16343902 MS.gene044425:CDS 35.0%
!! AATCCTTTAGGTTAGTTTGG+TGG - chr8.1:16342087-16342106 None:intergenic 35.0%
!! CACTTTTTGTACAGCACAAT+GGG - chr8.1:16344022-16344041 None:intergenic 35.0%
!! TGTCCTTTTGAAGGACTTTT+TGG - chr8.1:16340850-16340869 None:intergenic 35.0%
!! TTCTCTAAAGCATATGACTC+AGG - chr8.1:16341827-16341846 None:intergenic 35.0%
AAAATGCTAACAGCTGTCTC+CGG + chr8.1:16342532-16342551 MS.gene044425:intron 40.0%
ACTAGGAAGATGAGAAAGAG+TGG - chr8.1:16342981-16343000 None:intergenic 40.0%
ACTCTTGTCCTTCCTATTGA+TGG + chr8.1:16343975-16343994 MS.gene044425:CDS 40.0%
AGATCAAGGAAGAAGGAACA+TGG - chr8.1:16342926-16342945 None:intergenic 40.0%
AGTATCCTTAAGCTGTGATC+CGG - chr8.1:16342554-16342573 None:intergenic 40.0%
ATCGATCTGCAGTTCATAGT+TGG - chr8.1:16339914-16339933 None:intergenic 40.0%
ATCTAGAGGCTCATTGTTTC+TGG + chr8.1:16341053-16341072 MS.gene044425:intron 40.0%
ATGCGACTGCTATAACTCAA+AGG + chr8.1:16342113-16342132 MS.gene044425:intron 40.0%
CAGCCGAAAAGGTCAAAATA+TGG - chr8.1:16341449-16341468 None:intergenic 40.0%
CCACAACACCAAAAATGTGT+CGG - chr8.1:16340981-16341000 None:intergenic 40.0%
CCATTGTGCTGTACAAAAAG+TGG + chr8.1:16344020-16344039 MS.gene044425:CDS 40.0%
CTCTTGTAAATAGGATCGGA+GGG + chr8.1:16342704-16342723 MS.gene044425:intron 40.0%
GAGTGTCTCTTGTGCTAATT+TGG - chr8.1:16342046-16342065 None:intergenic 40.0%
GATATTATCGGAACAGATGG+TGG + chr8.1:16344044-16344063 MS.gene044425:CDS 40.0%
GATCAAGGAAGAAGGAACAT+GGG - chr8.1:16342925-16342944 None:intergenic 40.0%
GATTCAAAAGCAGAGCAACA+TGG - chr8.1:16339998-16340017 None:intergenic 40.0%
GCTTTATACTGGTAGCCATT+GGG - chr8.1:16341496-16341515 None:intergenic 40.0%
GGCATTTCTACTTGCATTCA+TGG + chr8.1:16339856-16339875 MS.gene044425:CDS 40.0%
GGTGATATTATCGGAACAGA+TGG + chr8.1:16344041-16344060 MS.gene044425:CDS 40.0%
TAATGGGGCTATTCATTGGT+TGG + chr8.1:16343734-16343753 MS.gene044425:CDS 40.0%
TCTCTTGTAAATAGGATCGG+AGG + chr8.1:16342703-16342722 MS.gene044425:intron 40.0%
TGCGAGGGTAAAATTTGGAA+CGG + chr8.1:16341216-16341235 MS.gene044425:intron 40.0%
TGTTTATGGAGTCCAGTAGA+TGG - chr8.1:16343477-16343496 None:intergenic 40.0%
TTAAGAGAGCTCTTCCAACA+TGG - chr8.1:16343080-16343099 None:intergenic 40.0%
TTCTTGTAAATAGGACCGGA+TGG - chr8.1:16342587-16342606 None:intergenic 40.0%
TTGCTTCGAAGCTAGTACTT+TGG + chr8.1:16341690-16341709 MS.gene044425:intron 40.0%
TTGGAATGCCATCAATAGGA+AGG - chr8.1:16343986-16344005 None:intergenic 40.0%
TTGTGTGCGAGGGTAAAATT+TGG + chr8.1:16341211-16341230 MS.gene044425:intron 40.0%
! AGAATGTTGCTCTTTTCCAG+CGG - chr8.1:16341518-16341537 None:intergenic 40.0%
! ATACCTTCGATCAGAAGTGT+CGG - chr8.1:16340339-16340358 None:intergenic 40.0%
! GCAATCACATGTATCGGTAT+CGG - chr8.1:16340393-16340412 None:intergenic 40.0%
! GGATATGGACAATTTTCCGT+TGG + chr8.1:16340060-16340079 MS.gene044425:CDS 40.0%
! GTGGAGTACTTTGTGAACTT+AGG + chr8.1:16340952-16340971 MS.gene044425:intron 40.0%
! TCACAATGATTTGTGTGCGA+GGG + chr8.1:16341201-16341220 MS.gene044425:intron 40.0%
! TGAGTTGGAATGCCATCAAT+AGG - chr8.1:16343990-16344009 None:intergenic 40.0%
! TTAGGAGACCGACACATTTT+TGG + chr8.1:16340970-16340989 MS.gene044425:intron 40.0%
! TTCACAATGATTTGTGTGCG+AGG + chr8.1:16341200-16341219 MS.gene044425:intron 40.0%
!! AACAGATGGTGGTAATGGAT+TGG + chr8.1:16344055-16344074 MS.gene044425:CDS 40.0%
!! AATGGGTAGAAGTACTGAGT+TGG - chr8.1:16344005-16344024 None:intergenic 40.0%
!! CGAGCATATATGGTTGATAG+AGG - chr8.1:16340908-16340927 None:intergenic 40.0%
!! GTGGTATTGACTTGAGACAT+GGG - chr8.1:16342068-16342087 None:intergenic 40.0%
!! TTTTCTCAGTCTATGGGCTA+TGG + chr8.1:16343890-16343909 MS.gene044425:CDS 40.0%
!!! CCACTTTTTGTACAGCACAA+TGG - chr8.1:16344023-16344042 None:intergenic 40.0%
AGAGCAGGGTTCCTCTTTAA+TGG + chr8.1:16343717-16343736 MS.gene044425:CDS 45.0%
AGCAGGGTTCCTCTTTAATG+GGG + chr8.1:16343719-16343738 MS.gene044425:CDS 45.0%
AGCATCAGTACCAGTTCAAG+TGG + chr8.1:16341922-16341941 MS.gene044425:intron 45.0%
AGGAAGATGAGAAAGAGTGG+AGG - chr8.1:16342978-16342997 None:intergenic 45.0%
ATTTCCTCAGCATGGATACG+TGG + chr8.1:16340933-16340952 MS.gene044425:intron 45.0%
CTGCAGTTCATAGTTGGAGT+TGG - chr8.1:16339908-16339927 None:intergenic 45.0%
GAGCAGGGTTCCTCTTTAAT+GGG + chr8.1:16343718-16343737 MS.gene044425:CDS 45.0%
GCACAAACATATCGTCACCA+AGG - chr8.1:16340433-16340452 None:intergenic 45.0%
GGAAGATGAGAAAGAGTGGA+GGG - chr8.1:16342977-16342996 None:intergenic 45.0%
GGGGAACTTTGAGCATGATT+GGG - chr8.1:16341902-16341921 None:intergenic 45.0%
GTTCAAGTGGCAGATAATCC+CGG + chr8.1:16341935-16341954 MS.gene044425:intron 45.0%
TCGTACGTATTTCCTCAGCA+TGG + chr8.1:16340925-16340944 MS.gene044425:intron 45.0%
TCTCAGTATACATAGCCGCT+CGG - chr8.1:16344145-16344164 None:intergenic 45.0%
TGGACTCTAACCGTCGTAAT+TGG + chr8.1:16340998-16341017 MS.gene044425:intron 45.0%
TGGGGAACTTTGAGCATGAT+TGG - chr8.1:16341903-16341922 None:intergenic 45.0%
TTAAAGAGGAACCCTGCTCT+AGG - chr8.1:16343717-16343736 None:intergenic 45.0%
TTCATGAGGCAGATGCATGA+TGG - chr8.1:16343127-16343146 None:intergenic 45.0%
! ATCGGAACAGATGGTGGTAA+TGG + chr8.1:16344050-16344069 MS.gene044425:CDS 45.0%
! ATGAAGTTGCCTGCTGTTTG+TGG + chr8.1:16340097-16340116 MS.gene044425:CDS 45.0%
! ATGGTCAATCCTTTGAGAGC+TGG - chr8.1:16343051-16343070 None:intergenic 45.0%
! CATGATTGGGTTGTGGCTTT+GGG - chr8.1:16341889-16341908 None:intergenic 45.0%
! CTTTGAGCATGATTGGGTTG+TGG - chr8.1:16341896-16341915 None:intergenic 45.0%
! GCGAGGGTAAAATTTGGAAC+GGG + chr8.1:16341217-16341236 MS.gene044425:intron 45.0%
! GGATTATCTGCCACTTGAAC+TGG - chr8.1:16341935-16341954 None:intergenic 45.0%
! GGCTTTATACTGGTAGCCAT+TGG - chr8.1:16341497-16341516 None:intergenic 45.0%
! GGTGCAAACAAAGCATTCGA+TGG - chr8.1:16339887-16339906 None:intergenic 45.0%
!! ACTTGAACTGGTACTGATGC+TGG - chr8.1:16341923-16341942 None:intergenic 45.0%
!! CTTGAACTGGTACTGATGCT+GGG - chr8.1:16341922-16341941 None:intergenic 45.0%
!! CTTTTCCAGCGGCTTTATAC+TGG - chr8.1:16341507-16341526 None:intergenic 45.0%
!! GGTGGTATTGACTTGAGACA+TGG - chr8.1:16342069-16342088 None:intergenic 45.0%
!! TTGAACTGGTACTGATGCTG+GGG - chr8.1:16341921-16341940 None:intergenic 45.0%
!!! CCGACACATTTTTGGTGTTG+TGG + chr8.1:16340978-16340997 MS.gene044425:intron 45.0%
!! AAATTATAACATAAAATAAA+AGG - chr8.1:16342258-16342277 None:intergenic 5.0%
!! AATTAAATAATTTATGTATT+TGG + chr8.1:16342626-16342645 MS.gene044425:intron 5.0%
ACTTCACGGGCAACCTTAGT+AGG - chr8.1:16343164-16343183 None:intergenic 50.0%
AGACTCACACACTCCAAGAG+TGG + chr8.1:16340633-16340652 MS.gene044425:intron 50.0%
AGTGAGACTCCACAAACAGC+AGG - chr8.1:16340109-16340128 None:intergenic 50.0%
ATATCAGTACTACTCCCGCG+CGG - chr8.1:16341424-16341443 None:intergenic 50.0%
CAAGGAAGAAGGAACATGGG+AGG - chr8.1:16342922-16342941 None:intergenic 50.0%
CCTTGGAATGGACATGGAAC+CGG - chr8.1:16341394-16341413 None:intergenic 50.0%
CGGTTCCATGTCCATTCCAA+GGG + chr8.1:16341392-16341411 MS.gene044425:intron 50.0%
CTCAGTATACATAGCCGCTC+GGG - chr8.1:16344144-16344163 None:intergenic 50.0%
GAAAGGAACGAGAGAGTGAG+AGG - chr8.1:16342885-16342904 None:intergenic 50.0%
GCTGGAAGTTGAGACTTGTG+AGG - chr8.1:16343027-16343046 None:intergenic 50.0%
TACTCCACGTATCCATGCTG+AGG - chr8.1:16340940-16340959 None:intergenic 50.0%
TAGTTGTCGACGACGCAACT+AGG - chr8.1:16342998-16343017 None:intergenic 50.0%
TCTGTTGCAGCAACTGCTTC+CGG + chr8.1:16340016-16340035 MS.gene044425:CDS 50.0%
TCTTCCAACATGGACAGCGA+TGG - chr8.1:16343070-16343089 None:intergenic 50.0%
TGTCTCCGGATCACAGCTTA+AGG + chr8.1:16342546-16342565 MS.gene044425:intron 50.0%
TTGACCATCGCTGTCCATGT+TGG + chr8.1:16343063-16343082 MS.gene044425:intron 50.0%
! AAGCTTGCTCATTGCCACCA+GGG - chr8.1:16344181-16344200 None:intergenic 50.0%
! AATCCTTTGAGAGCTGGTGC+TGG - chr8.1:16343045-16343064 None:intergenic 50.0%
! CCTAGTCCGTCGGAAAGTAT+GGG + chr8.1:16341469-16341488 MS.gene044425:intron 50.0%
! CTAGTCCGTCGGAAAGTATG+GGG + chr8.1:16341470-16341489 MS.gene044425:intron 50.0%
! GCATGATTGGGTTGTGGCTT+TGG - chr8.1:16341890-16341909 None:intergenic 50.0%
! TAAGCTTGCTCATTGCCACC+AGG - chr8.1:16344182-16344201 None:intergenic 50.0%
ACTCTGCTTTCACTCCCTGG+TGG + chr8.1:16344164-16344183 MS.gene044425:CDS 55.0%
AGGAACGAGAGAGTGAGAGG+AGG - chr8.1:16342882-16342901 None:intergenic 55.0%
CAATCCATGTGGATCCCGAG+CGG + chr8.1:16344127-16344146 MS.gene044425:CDS 55.0%
CCGGTTCCATGTCCATTCCA+AGG + chr8.1:16341391-16341410 MS.gene044425:intron 55.0%
CTTCCAGCACCAGCTCTCAA+AGG + chr8.1:16343039-16343058 MS.gene044425:intron 55.0%
GAGACTCTGCTTTCACTCCC+TGG + chr8.1:16344161-16344180 MS.gene044425:CDS 55.0%
GCCTAGTCCGTCGGAAAGTA+TGG + chr8.1:16341468-16341487 MS.gene044425:intron 55.0%
GGAATGGACATGGAACCGGT+TGG - chr8.1:16341390-16341409 None:intergenic 55.0%
GGCTACCAGTATAAAGCCGC+TGG + chr8.1:16341499-16341518 MS.gene044425:intron 55.0%
GGTGGGGAGTTTGAGTCCAA+TGG - chr8.1:16341312-16341331 None:intergenic 55.0%
TGCTACAGCTGCTCCATCCT+CGG + chr8.1:16340235-16340254 MS.gene044425:CDS 55.0%
TTGGGCCCCATACTTTCCGA+CGG - chr8.1:16341478-16341497 None:intergenic 55.0%
! CCCATACTTTCCGACGGACT+AGG - chr8.1:16341472-16341491 None:intergenic 55.0%
! GCACCGACACTTCTGATCGA+AGG + chr8.1:16340333-16340352 MS.gene044425:intron 55.0%
! TCGGAAAGTATGGGGCCCAA+TGG + chr8.1:16341478-16341497 MS.gene044425:intron 55.0%
! TTTTCGGCTGCCTAGTCCGT+CGG + chr8.1:16341459-16341478 MS.gene044425:intron 55.0%
!! GGCTTTGGGCTACTCTGTGA+AGG - chr8.1:16341875-16341894 None:intergenic 55.0%
ATAGCCGCTCGGGATCCACA+TGG - chr8.1:16344134-16344153 None:intergenic 60.0%
GCTACAGCTGCTCCATCCTC+GGG + chr8.1:16340236-16340255 MS.gene044425:CDS 60.0%
GGTGGCCCTTGGAATGGACA+TGG - chr8.1:16341400-16341419 None:intergenic 60.0%
!! GACGGACTAGGCAGCCGAAA+AGG - chr8.1:16341460-16341479 None:intergenic 60.0%
TCAGTACTACTCCCGCGCGG+AGG - chr8.1:16341421-16341440 None:intergenic 65.0%
CGCGGAGGTGGCCCTTGGAA+TGG - chr8.1:16341406-16341425 None:intergenic 70.0%
GTACTACTCCCGCGCGGAGG+TGG - chr8.1:16341418-16341437 None:intergenic 70.0%
TTCCAAGGGCCACCTCCGCG+CGG + chr8.1:16341406-16341425 MS.gene044425:intron 70.0%
TCCAAGGGCCACCTCCGCGC+GGG + chr8.1:16341407-16341426 MS.gene044425:intron 75.0%
! TCCCGCGCGGAGGTGGCCCT+TGG - chr8.1:16341411-16341430 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 16339815 16344202 16339815 ID=MS.gene044425
chr8.1 mRNA 16339815 16344202 16339815 ID=MS.gene044425.t1;Parent=MS.gene044425
chr8.1 exon 16339815 16340139 16339815 ID=MS.gene044425.t1.exon1;Parent=MS.gene044425.t1
chr8.1 CDS 16339815 16340139 16339815 ID=cds.MS.gene044425.t1;Parent=MS.gene044425.t1
chr8.1 exon 16340231 16340257 16340231 ID=MS.gene044425.t1.exon2;Parent=MS.gene044425.t1
chr8.1 CDS 16340231 16340257 16340231 ID=cds.MS.gene044425.t1;Parent=MS.gene044425.t1
chr8.1 exon 16341816 16341928 16341816 ID=MS.gene044425.t1.exon3;Parent=MS.gene044425.t1
chr8.1 CDS 16341816 16341928 16341816 ID=cds.MS.gene044425.t1;Parent=MS.gene044425.t1
chr8.1 exon 16343561 16344202 16343561 ID=MS.gene044425.t1.exon4;Parent=MS.gene044425.t1
chr8.1 CDS 16343561 16344202 16343561 ID=cds.MS.gene044425.t1;Parent=MS.gene044425.t1
Gene Sequence

>MS.gene044425

ATGCAGGACTCTGAAGCGATGAAAACTTTTGTTACTGTTTTGGCATTTCTACTTGCATTCATGGCATTTCCATCGAATGCTTTGTTTGCACCAACTCCAACTATGAACTGCAGATCGATCATGAATGATATGATGGTTGAATGTCTTCCATATTTTGTGGATCACAACAATAATTCTCAACCATGTTGCTCTGCTTTTGAATCTGTTGCAGCAACTGCTTCCGGCTGCATTTGTGATATTCATATGGATATGGACAATTTTCCGTTGGATAACACAAAGATGATGAAGTTGCCTGCTGTTTGTGGAGTCTCACTCCCTTGTCACTGTAAATATTTAACTCTATTCACTTCTATAAATTCATAATTATGTTTACACTGTTTGATACTAATGATTGTTACTTCATTTTCATGATACAGTGGATGCTACAGCTGCTCCATCCTCGGGTATGTAAATTAATTATGCATTTGTTTTATCTCATTTTTTAGTCAACAATCAACAATATAATTTGGGTCTATATAGCACCGACACTTCTGATCGAAGGTATGACATGTCCGATCTATGACACATATCAGTTTCCGATACCGATACATGTGATTGCATTTGTTTTATTCACTTCCTTGGTGACGATATGTTTGTGCCGTGTTTGATGTTCGTCAATACATTCATGTTATTTGAGTGAAGTTTTCATTTGATTGTTGTTACATGGACATTGTTTTTTAGCTTATATTTGGATTAAATGGAGTTTGATAAATGTAGTTGAGTGAGATACATAGAACTATTGAATTGTTATTATCTTGGTTGCGAAGAGTTTAGCAATGAGACTCACACACTCCAAGAGTGGTATTGTAGATTTAAAATGTTACACATCAAATATCTATGCAATCTTTTATCATCTTACACTAGTGGGATTGAAAGTTTTTTGTTTAAAATTCAAAATAAAATAGAATTGAATGAAATATGATGATTATTCCTTTTACCTTTGCTTCAATTTTAGATACACTACAATAGGAAGTGACATTATTGTGGGTAATGCCAAAAAGTCCTTCAAAAGGACATTCTTCGTAAGTTAATTTCTTATCTACGACCATATCCTCTATCAACCATATATGCTCGTACGTATTTCCTCAGCATGGATACGTGGAGTACTTTGTGAACTTAGGAGACCGACACATTTTTGGTGTTGTGGACTCTAACCGTCGTAATTGGTTATGTTAGATTATAACATGGACTTCATCAAAATCTAGAGGCTCATTGTTTCTGGTTTGTGTTTATAGTGTGGATGCTCATCGCCCAAAAAGAGAAAATATATTTTGACAAGATTAAATTGTCCGACAACGTGCATTGATACTATCCATGCACTTTTTTTATTTTTAATAATGTATTTCTTCACAATGATTTGTGTGCGAGGGTAAAATTTGGAACGGGAAGTTCTATGTGCATACTTACAACCTCTTTTGAGTTGTTCGTATATCACAACCCGTCCAAAATTTTGAACCATTGGACTCAAACTCCCCACCACTTATAAACACATTAACTTTTCTTAATCCTTCATATGTGAGATGTTTTTAGTTTCCAACCGGTTCCATGTCCATTCCAAGGGCCACCTCCGCGCGGGAGTAGTACTGATATCTCCATATTTTGACCTTTTCGGCTGCCTAGTCCGTCGGAAAGTATGGGGCCCAATGGCTACCAGTATAAAGCCGCTGGAAAAGAGCAACATTCTTAATGATGCCAGAAGGAGATGTAGCATTTTTGTTGCTCATCCCATCCTATCATTCAAATTCAATTTATCCTATTCCACTATACTTTACATTGCATATATGGGTTTCAATGCTTTTAATGAAATGTAATTTTCAGCTACTAGCAAATTTTATCTTGCTTCGAAGCTAGTACTTTGGACTAATTATGGTTCCAATAGAGTCAAAATCTGATGATTTGTTATTGTATTTATTATATTCAATTACTTTTCCAAGAATTTATGGTTGTTATGTGACATTGCAGTTGATGCACCTGAGTCATATGCTTTAGAGAATTTGATTTCAAGCTCATCACAGTCTCCTTCACAGAGTAGCCCAAAGCCACAACCCAATCATGCTCAAAGTTCCCCAGCATCAGTACCAGTTCAAGTGGCAGATAATCCCGGATCATTTTTCCCTTTTTCTTATTGGTTTTTTGCGATAATAATAATCATATGGTTTTTTGAAGAAGATGAAAATGAAGTAGCTCACCCAAATTAGCACAAGAGACACTCCCATGTCTCAAGTCAATACCACCAAACTAACCTAAAGGATTATAATCATGCGACTGCTATAACTCAAAGGATGACAAAGGAAGATATTCTGCCACACTTTGTCAATTCTCATTCTCTTTATTTTTCCTTTTTGCCTTTTGTTTGACATGTTCTTTAACTTTGTCTATGTGGATCTTGCAAGTTAAGAGACCTTTTATTTTATGTTATAATTTCTAATTTGAACTCCAATTTTTATATCAATTAAGTTTATCCTATTGATTTTATCGCTCGTTTATGGTTGATCAAACCTTTACATGTTAATAACACTCGATTGATCGATGATAGTACTGTAATTAATTGGTGGATTTATAGGCTCAAACTTATTTGGTATGGCTCCTAAAAAAATTATTTGCTTTCACTGTTGTACATTTGCGAACTTATTTGCATGTTCTTACTTAATTAGCTGAGTTCTATGATTATTTTTTGGAAAATGCTAACAGCTGTCTCCGGATCACAGCTTAAGGATACTATATAGTACTCCATCCGGTCCTATTTACAAGAAACAATTGATTTTTTAGATAAATTAAATAATTTATGTATTTGGTTTAGATTCTTGACTAGATATATAAATTATTCAATGTATCTAAAAAGTAAACTTTCTCTTGTAAATAGGATCGGAGGGAGTAATTTTGTTTTAGAGAGATAATTATTGCATTAAAAATTGTTTAATTAATTCATAAAAAGTCAAAAAGTTTCTTTTTTTAGAAATAACTTCCTTTTTTAATATCTTAACATGACACTTTAAATATTCTAAAATAAGTTTTAGAATTAATTCCTCCTCTCACTCTCTCGTTCCTTTCTATTGTTCAGTTCACCTCCCATGTTCCTTCTTCCTTGATCTTCATTTCAGCTTCTTTCTAGATTCTTCTCCCTCCACTCTTTCTCATCTTCCTAGTTGCGTCGTCGACAACTAGAATATCCTCACAAGTCTCAACTTCCAGCACCAGCTCTCAAAGGATTGACCATCGCTGTCCATGTTGGAAGAGCTCTCTTAATTAATACTAGAACTTTATATATCACCATCATGCATCTGCCTCATGAATTGATGATTCAAATCCTACTAAGGTTGCCCGTGAAGTCTCTTATACGTTTCAAATCTGTTTGTAAGTCTTGGTTTTCTCTTATCTCTGATTCCCACTTTGCTAATTCACATTTTCAAATTACTGCTGCAACACAGACTCGTAAAATTGTACTCATATCATATCCAGATCTTGAAACTCGTTCTATAGATTTTGAGGCATAAGATTCTGCATCAGCTTCACTAAACCTTAGATTTTTGGATCCCCAATCTCATTCTGATCTTGAAATTAAAGGTTCCTGTAGAGGCTTTATATTTTTGCACTGCTCTTCAACCTTTTATCTATGGAATCCATCTACTGGACTCCATAAACAAATACCTTTGTCTCCTAATGATTCCAAATATTTCTGTTATCTATATGGATTTGGGTATGATCAGTTAAGAGATGATTATTTGGTGGTTTCAATCTACTATGATTCATCGGTAGTTGATCATAATTATTCACGTTTGGAGTTTTTCTCATTGAGAGATAATACGTGGAAAGAGCTCGACGATACTCACTTCCCTTATTTGAACTCTCATGAATATAATCCTAGAGCAGGGTTCCTCTTTAATGGGGCTATTCATTGGTTGGCTTTTCGTTATGATCTACAAAATGATGTTATTATTGCCTTTGACTTAATGGAAAAGAAACTTTTAGATATACATTTGCCGGATGATATTTTTTACCATGATCCTAATTATTATGACTTGTGGGTATTTGGAGATTTTCTCAGTCTATGGGCTATGGATGAAGAAATAGTTGAAATATGGGTTATGAAAGAATACAAAGTGCATTCGTCTTGGACTAAGACTCTTGTCCTTCCTATTGATGGCATTCCAACTCAGTACTTCTACCCATTGTGCTGTACAAAAAGTGGTGATATTATCGGAACAGATGGTGGTAATGGATTGGTGAAGTACGATGAAAATGGAGAATTACTAGACGTTCATTCCTATTTCAACAATCCATGTGGATCCCGAGCGGCTATGTATACTGAGACTCTGCTTTCACTCCCTGGTGGCAATGAGCAAGCTTAA
Protein sequence

>MS.gene044425.t1

MQDSEAMKTFVTVLAFLLAFMAFPSNALFAPTPTMNCRSIMNDMMVECLPYFVDHNNNSQPCCSAFESVAATASGCICDIHMDMDNFPLDNTKMMKLPAVCGVSLPCHLDATAAPSSVDAPESYALENLISSSSQSPSQSSPKPQPNHAQSSPASLRDDYLVVSIYYDSSVVDHNYSRLEFFSLRDNTWKELDDTHFPYLNSHEYNPRAGFLFNGAIHWLAFRYDLQNDVIIAFDLMEKKLLDIHLPDDIFYHDPNYYDLWVFGDFLSLWAMDEEIVEIWVMKEYKVHSSWTKTLVLPIDGIPTQYFYPLCCTKSGDIIGTDGGNGLVKYDENGELLDVHSYFNNPCGSRAAMYTETLLSLPGGNEQA