AlfalfaGEDB | MS.gene024979

M. sativa cultivar XinJiangDaYe / MS.gene024979

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024979.t1	GAU41607.1	63.3	199	69	3	12	208	193	389	1.30E-67	266.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024979.t1	A0A2Z6PDC8	63.3	199	69	3	12	208	193	389	9.6e-68	266.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene50332	MS.gene024979	PPI
MS.gene072177	MS.gene024979	PPI
MS.gene58722	MS.gene024979	PPI
MS.gene064091	MS.gene024979	PPI
MS.gene064112	MS.gene024979	PPI
MS.gene045476	MS.gene024979	PPI
MS.gene24208	MS.gene024979	PPI
MS.gene061241	MS.gene024979	PPI
MS.gene50307	MS.gene024979	PPI
MS.gene24213	MS.gene024979	PPI
MS.gene43796	MS.gene024979	PPI
MS.gene044429	MS.gene024979	PPI
MS.gene024979	MS.gene24173	PPI
MS.gene85454	MS.gene024979	PPI
MS.gene58312	MS.gene024979	PPI
MS.gene43790	MS.gene024979	PPI
MS.gene51191	MS.gene024979	PPI
MS.gene58313	MS.gene024979	PPI
MS.gene024979	MS.gene023999	PPI
MS.gene44887	MS.gene024979	PPI
MS.gene85043	MS.gene024979	PPI
MS.gene39265	MS.gene024979	PPI
MS.gene033430	MS.gene024979	PPI
MS.gene036583	MS.gene024979	PPI
MS.gene88780	MS.gene024979	PPI
MS.gene87588	MS.gene024979	PPI
MS.gene055694	MS.gene024979	PPI
MS.gene58314	MS.gene024979	PPI
MS.gene024979	MS.gene000036	PPI
MS.gene024979	MS.gene50320	PPI
MS.gene71159	MS.gene024979	PPI
MS.gene96448	MS.gene024979	PPI
MS.gene77858	MS.gene024979	PPI
MS.gene041392	MS.gene024979	PPI
MS.gene069075	MS.gene024979	PPI
MS.gene033081	MS.gene024979	PPI
MS.gene031591	MS.gene024979	PPI
MS.gene50301	MS.gene024979	PPI
MS.gene035262	MS.gene024979	PPI
MS.gene51199	MS.gene024979	PPI
MS.gene58321	MS.gene024979	PPI
MS.gene064108	MS.gene024979	PPI
MS.gene062698	MS.gene024979	PPI
MS.gene57536	MS.gene024979	PPI
MS.gene96126	MS.gene024979	PPI
MS.gene019503	MS.gene024979	PPI
MS.gene024979	MS.gene50305	PPI
MS.gene016524	MS.gene024979	PPI
MS.gene024979	MS.gene032969	PPI
MS.gene87559	MS.gene024979	PPI
MS.gene041473	MS.gene024979	PPI
MS.gene50336	MS.gene024979	PPI
MS.gene024979	MS.gene42445	PPI
MS.gene59943	MS.gene024979	PPI
MS.gene024979	MS.gene22715	PPI
MS.gene31587	MS.gene024979	PPI
MS.gene041393	MS.gene024979	PPI
MS.gene033441	MS.gene024979	PPI
MS.gene063474	MS.gene024979	PPI
MS.gene024979	MS.gene63657	PPI
MS.gene048193	MS.gene024979	PPI
MS.gene024979	MS.gene023996	PPI
MS.gene063826	MS.gene024979	PPI
MS.gene060367	MS.gene024979	PPI
MS.gene44892	MS.gene024979	PPI
MS.gene024979	MS.gene061240	PPI
MS.gene036664	MS.gene024979	PPI
MS.gene58239	MS.gene024979	PPI
MS.gene066641	MS.gene024979	PPI
MS.gene024011	MS.gene024979	PPI
MS.gene000038	MS.gene024979	PPI
MS.gene57531	MS.gene024979	PPI
MS.gene064111	MS.gene024979	PPI
MS.gene87584	MS.gene024979	PPI
MS.gene024979	MS.gene035234	PPI
MS.gene67501	MS.gene024979	PPI
MS.gene39262	MS.gene024979	PPI
MS.gene58241	MS.gene024979	PPI
MS.gene053256	MS.gene024979	PPI
MS.gene025887	MS.gene024979	PPI
MS.gene019507	MS.gene024979	PPI
MS.gene045474	MS.gene024979	PPI
MS.gene75875	MS.gene024979	PPI
MS.gene041470	MS.gene024979	PPI
MS.gene058694	MS.gene024979	PPI
MS.gene064090	MS.gene024979	PPI
MS.gene015089	MS.gene024979	PPI
MS.gene006710	MS.gene024979	PPI
MS.gene90743	MS.gene024979	PPI
MS.gene024979	MS.gene044425	PPI
MS.gene011679	MS.gene024979	PPI
MS.gene87554	MS.gene024979	PPI
MS.gene033079	MS.gene024979	PPI
MS.gene64001	MS.gene024979	PPI
MS.gene57533	MS.gene024979	PPI
MS.gene51190	MS.gene024979	PPI
MS.gene36704	MS.gene024979	PPI
MS.gene032970	MS.gene024979	PPI
MS.gene024979	MS.gene27022	PPI
MS.gene77856	MS.gene024979	PPI
MS.gene24826	MS.gene024979	PPI
MS.gene57532	MS.gene024979	PPI
MS.gene036556	MS.gene024979	PPI
MS.gene68890	MS.gene024979	PPI
MS.gene40887	MS.gene024979	PPI
MS.gene024979	MS.gene024009	PPI
MS.gene024979	MS.gene036599	PPI
MS.gene066622	MS.gene024979	PPI
MS.gene034688	MS.gene024979	PPI
MS.gene51188	MS.gene024979	PPI
MS.gene63655	MS.gene024979	PPI
MS.gene44883	MS.gene024979	PPI
MS.gene047279	MS.gene024979	PPI
MS.gene024979	MS.gene006705	PPI
MS.gene48221	MS.gene024979	PPI
MS.gene41046	MS.gene024979	PPI
MS.gene063472	MS.gene024979	PPI
MS.gene017412	MS.gene024979	PPI
MS.gene57529	MS.gene024979	PPI
MS.gene80884	MS.gene024979	PPI
MS.gene51192	MS.gene024979	PPI
MS.gene87585	MS.gene024979	PPI
MS.gene009883	MS.gene024979	PPI
MS.gene041395	MS.gene024979	PPI
MS.gene58317	MS.gene024979	PPI
MS.gene40886	MS.gene024979	PPI
MS.gene044563	MS.gene024979	PPI
MS.gene033427	MS.gene024979	PPI
MS.gene03060	MS.gene024979	PPI
MS.gene27051	MS.gene024979	PPI
MS.gene024979	MS.gene058696	PPI
MS.gene024979	MS.gene009893	PPI
MS.gene40985	MS.gene024979	PPI
MS.gene060368	MS.gene024979	PPI
MS.gene041474	MS.gene024979	PPI
MS.gene77704	MS.gene024979	PPI
MS.gene27020	MS.gene024979	PPI
MS.gene066620	MS.gene024979	PPI
MS.gene035236	MS.gene024979	PPI
MS.gene86273	MS.gene024979	PPI
MS.gene041388	MS.gene024979	PPI
MS.gene059157	MS.gene024979	PPI
MS.gene51208	MS.gene024979	PPI
MS.gene50304	MS.gene024979	PPI
MS.gene045475	MS.gene024979	PPI
MS.gene88776	MS.gene024979	PPI
MS.gene35068	MS.gene024979	PPI
MS.gene90744	MS.gene024979	PPI
MS.gene51204	MS.gene024979	PPI
MS.gene58783	MS.gene024979	PPI
MS.gene058693	MS.gene024979	PPI
MS.gene036557	MS.gene024979	PPI
MS.gene50329	MS.gene024979	PPI
MS.gene070462	MS.gene024979	PPI
MS.gene31637	MS.gene024979	PPI
MS.gene57537	MS.gene024979	PPI
MS.gene42447	MS.gene024979	PPI
MS.gene024979	MS.gene045473	PPI
MS.gene024979	MS.gene50301	PPI
MS.gene059156	MS.gene024979	PPI
MS.gene84698	MS.gene024979	PPI
MS.gene009891	MS.gene024979	PPI
MS.gene82082	MS.gene024979	PPI
MS.gene024979	MS.gene40984	PPI
MS.gene90742	MS.gene024979	PPI
MS.gene58316	MS.gene024979	PPI
MS.gene57535	MS.gene024979	PPI
MS.gene012215	MS.gene024979	PPI
MS.gene87200	MS.gene024979	PPI
MS.gene058701	MS.gene024979	PPI
MS.gene58319	MS.gene024979	PPI
MS.gene058669	MS.gene024979	PPI
MS.gene26830	MS.gene024979	PPI
MS.gene033432	MS.gene024979	PPI
MS.gene024979	MS.gene58240	PPI
MS.gene024979	MS.gene27284	PPI
MS.gene024979	MS.gene034680	PPI
MS.gene44885	MS.gene024979	PPI
MS.gene060370	MS.gene024979	PPI
MS.gene50327	MS.gene024979	PPI
MS.gene066635	MS.gene024979	PPI
MS.gene010758	MS.gene024979	PPI
MS.gene96406	MS.gene024979	PPI
MS.gene024979	MS.gene51190	PPI
MS.gene87586	MS.gene024979	PPI
MS.gene57530	MS.gene024979	PPI
MS.gene50326	MS.gene024979	PPI
MS.gene42451	MS.gene024979	PPI
MS.gene51200	MS.gene024979	PPI
MS.gene50339	MS.gene024979	PPI
MS.gene54541	MS.gene024979	PPI
MS.gene046958	MS.gene024979	PPI
MS.gene060366	MS.gene024979	PPI
MS.gene87564	MS.gene024979	PPI
MS.gene88774	MS.gene024979	PPI
MS.gene42452	MS.gene024979	PPI
MS.gene40986	MS.gene024979	PPI
MS.gene063414	MS.gene024979	PPI
MS.gene024979	MS.gene041489	PPI
MS.gene024979	MS.gene38220	PPI
MS.gene69307	MS.gene024979	PPI
MS.gene009892	MS.gene024979	PPI
MS.gene40902	MS.gene024979	PPI
MS.gene57526	MS.gene024979	PPI
MS.gene021553	MS.gene024979	PPI
MS.gene024979	MS.gene035238	PPI
MS.gene26957	MS.gene024979	PPI
MS.gene033875	MS.gene024979	PPI
MS.gene97996	MS.gene024979	PPI
MS.gene036582	MS.gene024979	PPI
MS.gene27021	MS.gene024979	PPI
MS.gene035235	MS.gene024979	PPI
MS.gene58320	MS.gene024979	PPI
MS.gene066120	MS.gene024979	PPI
MS.gene053299	MS.gene024979	PPI
MS.gene041394	MS.gene024979	PPI
MS.gene024979	MS.gene80610	PPI
MS.gene58781	MS.gene024979	PPI
MS.gene57717	MS.gene024979	PPI
MS.gene57525	MS.gene024979	PPI
MS.gene028390	MS.gene024979	PPI
MS.gene011106	MS.gene024979	PPI
MS.gene033440	MS.gene024979	PPI
MS.gene62398	MS.gene024979	PPI
MS.gene60027	MS.gene024979	PPI
MS.gene44886	MS.gene024979	PPI
MS.gene066623	MS.gene024979	PPI
MS.gene038756	MS.gene024979	PPI
MS.gene40904	MS.gene024979	PPI
MS.gene041390	MS.gene024979	PPI
MS.gene24286	MS.gene024979	PPI
MS.gene92376	MS.gene024979	PPI
MS.gene000035	MS.gene024979	PPI
MS.gene024979	MS.gene041391	PPI
MS.gene87569	MS.gene024979	PPI
MS.gene87573	MS.gene024979	PPI
MS.gene041491	MS.gene024979	PPI
MS.gene019504	MS.gene024979	PPI
MS.gene034762	MS.gene024979	PPI
MS.gene064114	MS.gene024979	PPI
MS.gene51207	MS.gene024979	PPI
MS.gene059096	MS.gene024979	PPI
MS.gene50297	MS.gene024979	PPI
MS.gene024979	MS.gene87554	PPI
MS.gene006711	MS.gene024979	PPI
MS.gene024979	MS.gene064083	PPI
MS.gene27285	MS.gene024979	PPI
MS.gene58716	MS.gene024979	PPI
MS.gene68580	MS.gene024979	PPI
MS.gene033444	MS.gene024979	PPI
MS.gene019505	MS.gene024979	PPI
MS.gene053257	MS.gene024979	PPI
MS.gene50306	MS.gene024979	PPI
MS.gene58785	MS.gene024979	PPI
MS.gene024979	MS.gene016220	PPI
MS.gene024979	MS.gene024008	PPI
MS.gene034690	MS.gene024979	PPI
MS.gene066639	MS.gene024979	PPI
MS.gene26949	MS.gene024979	PPI
MS.gene51189	MS.gene024979	PPI
MS.gene044426	MS.gene024979	PPI
MS.gene96407	MS.gene024979	PPI
MS.gene036558	MS.gene024979	PPI
MS.gene50309	MS.gene024979	PPI
MS.gene036760	MS.gene024979	PPI
MS.gene77857	MS.gene024979	PPI
MS.gene58311	MS.gene024979	PPI
MS.gene024979	MS.gene28758	PPI
MS.gene57527	MS.gene024979	PPI
MS.gene59637	MS.gene024979	PPI
MS.gene033426	MS.gene024979	PPI
MS.gene035237	MS.gene024979	PPI
MS.gene064086	MS.gene024979	PPI
MS.gene59639	MS.gene024979	PPI
MS.gene034681	MS.gene024979	PPI
MS.gene034677	MS.gene024979	PPI
MS.gene50298	MS.gene024979	PPI
MS.gene031590	MS.gene024979	PPI
MS.gene036584	MS.gene024979	PPI
MS.gene67687	MS.gene024979	PPI
MS.gene035261	MS.gene024979	PPI
MS.gene063670	MS.gene024979	PPI
MS.gene066626	MS.gene024979	PPI
MS.gene019506	MS.gene024979	PPI
MS.gene058692	MS.gene024979	PPI
MS.gene024979	MS.gene033442	PPI
MS.gene033083	MS.gene024979	PPI
MS.gene69309	MS.gene024979	PPI
MS.gene63658	MS.gene024979	PPI
MS.gene024002	MS.gene024979	PPI
MS.gene036581	MS.gene024979	PPI
MS.gene035263	MS.gene024979	PPI
MS.gene024979	MS.gene44428	PPI
MS.gene034686	MS.gene024979	PPI
MS.gene40982	MS.gene024979	PPI
MS.gene070461	MS.gene024979	PPI
MS.gene003076	MS.gene024979	PPI
MS.gene024979	MS.gene058703	PPI
MS.gene58315	MS.gene024979	PPI
MS.gene87557	MS.gene024979	PPI
MS.gene024979	MS.gene024000	PPI
MS.gene030114	MS.gene024979	PPI
MS.gene036662	MS.gene024979	PPI
MS.gene036663	MS.gene024979	PPI
MS.gene87563	MS.gene024979	PPI
MS.gene033431	MS.gene024979	PPI
MS.gene064109	MS.gene024979	PPI
MS.gene24212	MS.gene024979	PPI
MS.gene051820	MS.gene024979	PPI
MS.gene041475	MS.gene024979	PPI
MS.gene40988	MS.gene024979	PPI
MS.gene81242	MS.gene024979	PPI
MS.gene26101	MS.gene024979	PPI
MS.gene27283	MS.gene024979	PPI
MS.gene64203	MS.gene024979	PPI
MS.gene024979	MS.gene36595	PPI
MS.gene045140	MS.gene024979	PPI
MS.gene024004	MS.gene024979	PPI
MS.gene42444	MS.gene024979	PPI
MS.gene51202	MS.gene024979	PPI
MS.gene44428	MS.gene024979	PPI
MS.gene059101	MS.gene024979	PPI
MS.gene87562	MS.gene024979	PPI
MS.gene024979	MS.gene50311	PPI
MS.gene024979	MS.gene058989	PPI
MS.gene024420	MS.gene024979	PPI
MS.gene024979	MS.gene57538	PPI
MS.gene024979	MS.gene041468	PPI
MS.gene26829	MS.gene024979	PPI
MS.gene064104	MS.gene024979	PPI
MS.gene40878	MS.gene024979	PPI
MS.gene024979	MS.gene27319	PPI
MS.gene51201	MS.gene024979	PPI
MS.gene88416	MS.gene024979	PPI
MS.gene033443	MS.gene024979	PPI
MS.gene54049	MS.gene024979	PPI
MS.gene50337	MS.gene024979	PPI
MS.gene43789	MS.gene024979	PPI
MS.gene57528	MS.gene024979	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024979.t1	MTR_3g103020	61.929	197	69	4	17	210	185	378	1.19e-79	243
MS.gene024979.t1	MTR_4g109270	61.463	205	75	4	7	210	163	364	4.21e-79	241
MS.gene024979.t1	MTR_6g060650	62.051	195	69	4	15	209	183	372	7.92e-79	240
MS.gene024979.t1	MTR_4g109280	60.714	196	70	5	17	210	169	359	4.95e-75	230
MS.gene024979.t1	MTR_4g117720	60.194	206	71	6	12	210	177	378	9.27e-75	230
MS.gene024979.t1	MTR_4g116330	54.808	208	89	3	5	210	176	380	4.68e-73	226
MS.gene024979.t1	MTR_8g040935	56.122	196	82	3	18	210	14	208	5.72e-71	215
MS.gene024979.t1	MTR_3g034180	58.706	201	72	5	15	209	293	488	1.18e-70	223
MS.gene024979.t1	MTR_3g034160	59.406	202	69	6	15	209	179	374	9.65e-69	214
MS.gene024979.t1	MTR_4g117870	56.701	194	45	3	17	210	113	267	3.46e-68	210
MS.gene024979.t1	MTR_4g023130	56.633	196	77	5	15	209	124	312	8.45e-67	208
MS.gene024979.t1	MTR_6g463430	55.385	195	79	4	17	210	15	202	2.92e-65	200
MS.gene024979.t1	MTR_4g117850	56.410	195	80	5	16	207	184	376	3.03e-65	206
MS.gene024979.t1	MTR_3g034130	55.319	188	74	4	15	196	179	362	5.74e-65	205
MS.gene024979.t1	MTR_4g117770	53.623	207	91	3	7	210	163	367	1.49e-64	204
MS.gene024979.t1	MTR_4g117810	53.623	207	91	3	7	210	163	367	1.49e-64	204
MS.gene024979.t1	MTR_4g023080	54.592	196	81	5	15	209	165	353	1.71e-64	203
MS.gene024979.t1	MTR_4g117780	52.657	207	93	3	7	210	163	367	5.76e-64	202
MS.gene024979.t1	MTR_5g023000	92.929	99	7	0	112	210	1	99	1.96e-63	192
MS.gene024979.t1	MTR_8g433030	53.061	196	87	4	11	205	146	337	2.42e-63	200
MS.gene024979.t1	MTR_4g116320	55.385	195	80	4	15	207	66	255	3.11e-63	197
MS.gene024979.t1	MTR_8g032390	53.061	196	87	4	11	205	179	370	7.61e-63	199
MS.gene024979.t1	MTR_4g023070	53.398	206	77	5	17	209	170	369	1.59e-62	199
MS.gene024979.t1	MTR_4g021785	54.082	196	85	4	15	210	165	355	1.73e-62	198
MS.gene024979.t1	MTR_4g094365	51.220	205	94	4	8	210	164	364	3.94e-62	197
MS.gene024979.t1	MTR_4g023090	51.196	209	82	5	15	209	181	383	1.10e-61	197
MS.gene024979.t1	MTR_4g122850	52.500	200	87	7	15	210	169	364	3.71e-60	193
MS.gene024979.t1	MTR_4g023120	50.467	214	87	5	10	210	163	370	6.77e-60	192
MS.gene024979.t1	MTR_4g118380	59.195	174	57	5	17	181	187	355	1.63e-59	191
MS.gene024979.t1	MTR_4g023380	49.541	218	80	6	17	210	168	379	2.72e-58	188
MS.gene024979.t1	MTR_5g097210	52.604	192	84	5	17	206	173	359	2.55e-57	185
MS.gene024979.t1	MTR_5g070080	53.333	195	87	4	17	210	195	386	8.28e-57	184
MS.gene024979.t1	MTR_8g433040	49.057	212	91	5	1	210	168	364	3.36e-56	182
MS.gene024979.t1	MTR_8g032380	49.057	212	91	5	1	210	168	364	3.36e-56	182
MS.gene024979.t1	MTR_1g055175	50.000	206	93	8	10	210	1	201	5.50e-56	176
MS.gene024979.t1	MTR_4g118400	51.942	206	79	6	2	204	106	294	2.65e-55	178
MS.gene024979.t1	MTR_5g070130	49.505	202	93	5	17	210	177	377	9.84e-55	179
MS.gene024979.t1	MTR_4g023200	52.000	200	82	7	15	208	167	358	3.97e-54	177
MS.gene024979.t1	MTR_4g023190	53.030	198	82	6	15	208	167	357	1.82e-53	175
MS.gene024979.t1	MTR_4g023150	50.476	210	93	7	4	208	155	358	6.62e-53	173
MS.gene024979.t1	MTR_1g055195	49.261	203	88	9	17	210	282	478	1.45e-52	176
MS.gene024979.t1	MTR_4g116330	46.154	208	68	3	5	210	176	341	5.42e-52	171
MS.gene024979.t1	MTR_5g070088	48.980	196	96	4	17	210	193	386	4.56e-50	167
MS.gene024979.t1	MTR_4g118370	48.205	195	75	6	16	207	86	257	8.14e-49	160
MS.gene024979.t1	MTR_1g055135	47.980	198	92	7	20	210	182	375	3.70e-48	162
MS.gene024979.t1	MTR_4g117530	46.907	194	67	4	17	210	96	253	6.47e-48	157
MS.gene024979.t1	MTR_1g055250	48.925	186	81	8	17	197	77	253	2.12e-47	158
MS.gene024979.t1	MTR_1g055165	51.786	168	74	6	45	210	156	318	3.77e-46	155
MS.gene024979.t1	MTR_4g117750	49.254	201	84	9	17	206	162	355	2.05e-45	157
MS.gene024979.t1	MTR_4g117750	56.061	132	50	1	85	208	350	481	3.49e-38	137
MS.gene024979.t1	MTR_4g023440	45.500	200	62	4	13	210	178	332	6.42e-44	149
MS.gene024979.t1	MTR_7g079400	44.231	208	100	8	13	210	136	337	1.75e-42	146
MS.gene024979.t1	MTR_8g102520	41.748	206	108	8	11	210	123	322	2.83e-42	145
MS.gene024979.t1	MTR_4g118360	63.793	116	36	4	97	210	15	126	9.06e-41	135
MS.gene024979.t1	MTR_4g122860	42.188	192	77	5	24	210	158	320	1.46e-38	136
MS.gene024979.t1	MTR_7g079370	45.026	191	96	7	18	204	165	350	1.18e-37	134
MS.gene024979.t1	MTR_4g121580	44.211	190	71	6	14	200	182	339	5.69e-36	130
MS.gene024979.t1	MTR_8g098830	46.154	169	79	8	18	181	35	196	7.30e-36	126
MS.gene024979.t1	MTR_7g079450	46.853	143	69	4	69	210	1	137	5.17e-31	110
MS.gene024979.t1	MTR_2g048580	39.394	198	102	8	18	210	158	342	5.98e-30	113
MS.gene024979.t1	MTR_4g114700	38.503	187	63	3	18	201	81	218	5.86e-28	105
MS.gene024979.t1	MTR_8g013010	55.660	106	39	5	11	115	217	315	1.18e-27	107
MS.gene024979.t1	MTR_4g117430	51.887	106	46	4	7	112	55	155	3.80e-27	101
MS.gene024979.t1	MTR_7g079420	38.251	183	100	7	35	210	968	1144	7.73e-27	107
MS.gene024979.t1	MTR_7g117720	63.218	87	28	2	123	205	186	272	1.15e-25	100
MS.gene024979.t1	MTR_4g122840	40.441	136	45	3	76	210	164	264	9.06e-22	90.1
MS.gene024979.t1	MTR_8g013005	61.017	59	23	0	152	210	1	59	5.02e-19	77.8
MS.gene024979.t1	MTR_4g023430	50.000	82	38	1	132	210	141	222	2.90e-18	80.1
MS.gene024979.t1	MTR_4g133170	28.571	189	124	7	17	201	173	354	4.87e-13	67.4
MS.gene024979.t1	MTR_0129s0050	27.604	192	125	4	19	205	224	406	7.32e-13	67.0
MS.gene024979.t1	MTR_4g023100	57.143	56	22	1	154	209	65	118	8.02e-13	63.2
MS.gene024979.t1	MTR_4g109290	58.491	53	22	0	158	210	136	188	1.78e-12	63.9
MS.gene024979.t1	MTR_2g426020	27.941	204	124	9	17	207	190	383	3.14e-12	65.1
MS.gene024979.t1	MTR_2g028130	30.120	166	103	6	17	175	194	353	7.20e-12	63.9
MS.gene024979.t1	MTR_8g099460	28.846	156	96	5	17	170	184	326	1.20e-11	63.2
MS.gene024979.t1	MTR_2g026010	27.919	197	114	9	17	205	169	345	1.24e-11	63.2
MS.gene024979.t1	MTR_2g425980	30.542	203	121	8	17	207	189	383	1.44e-11	63.2
MS.gene024979.t1	MTR_4g116340	56.897	58	22	3	18	75	193	247	1.82e-11	62.0
MS.gene024979.t1	MTR_2g025420	27.451	204	122	8	17	202	197	392	2.42e-11	62.4
MS.gene024979.t1	MTR_2g028140	33.858	127	69	6	17	135	198	317	4.00e-11	62.0
MS.gene024979.t1	MTR_3g083010	27.143	210	130	8	17	210	199	401	8.58e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 38 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGAAATTATTTCTATGGTTT+TGG	0.137317	5.3:+381954	MS.gene024979:CDS
AATTGTGATGTGTGGGTATT+TGG	0.202909	5.3:+382287	MS.gene024979:CDS
TTGGAGAATTTCTCAGTATA+TGG	0.237144	5.3:+382306	MS.gene024979:CDS
TCGTATCGAAATTATTTCTA+TGG	0.245541	5.3:+381948	MS.gene024979:CDS
CTAATGATACACTTGAAATA+TGG	0.280671	5.3:+382342	MS.gene024979:CDS
ATTAGCTAATACTAAGCATT+TGG	0.343978	5.3:+382031	MS.gene024979:intron
TCAGTAGAGGAATTGATATA+AGG	0.357380	5.3:-382107	None:intergenic
GCTTCATAGTCAATATCAAT+TGG	0.392804	5.3:-382260	None:intergenic
ACTGATTACCCCAAAATAAC+AGG	0.399631	5.3:+382125	MS.gene024979:CDS
TGGAGAATTTCTCAGTATAT+GGG	0.404173	5.3:+382307	MS.gene024979:CDS
TGCCTTTGATTTAATCAAAA+GGG	0.415367	5.3:+382217	MS.gene024979:CDS
TTGCCTTTGATTTAATCAAA+AGG	0.422457	5.3:+382216	MS.gene024979:CDS
AACAGAAGATGGATGGAAAT+TGG	0.423122	5.3:+382484	MS.gene024979:CDS
CAGTAGAGGAATTGATATAA+GGG	0.438574	5.3:-382106	None:intergenic
GGTGACAGTGACCAAGCTTA+AGG	0.452041	5.3:+382611	MS.gene024979:CDS
GAGTCTCTGCTTTCACTCCC+TGG	0.452167	5.3:+382590	MS.gene024979:CDS
AATACAAAGTGCATTCCTCT+TGG	0.461402	5.3:+382375	MS.gene024979:CDS
ATTTCTCAGTATATGGGCTA+TGG	0.479112	5.3:+382313	MS.gene024979:CDS
GATATCATTGGAACAGAAGA+TGG	0.479823	5.3:+382473	MS.gene024979:CDS
TATTGGGGAAAACAGCTTAG+TGG	0.491914	5.3:-382432	None:intergenic
TTGTGTCATCTCCTTAAGCT+TGG	0.494818	5.3:-382622	None:intergenic
TAATGATACACTTGAAATAT+GGG	0.496908	5.3:+382343	MS.gene024979:CDS
CTTCATAGTCAATATCAATT+GGG	0.498545	5.3:-382259	None:intergenic
TAAGCTTGGTCACTGTCACC+AGG	0.500905	5.3:-382608	None:intergenic
TAATACATGGAAAGAAATTG+AGG	0.507096	5.3:+382073	MS.gene024979:CDS
TCTCATTCAGAGCTAATACA+TGG	0.515391	5.3:+382060	MS.gene024979:CDS
CTCTGTATAAAGAGCCACTT+CGG	0.548132	5.3:-382570	None:intergenic
TCGTCACGATCATTTACGAA+TGG	0.560012	5.3:+382184	MS.gene024979:CDS
AATACATGGAAAGAAATTGA+GGG	0.567862	5.3:+382074	MS.gene024979:CDS
TCATTGGAACAGAAGATGGA+TGG	0.571754	5.3:+382477	MS.gene024979:CDS
TACTATTCTGACAGTACACA+TGG	0.588984	5.3:+382545	MS.gene024979:CDS
AAGCTTGGTCACTGTCACCA+GGG	0.590911	5.3:-382607	None:intergenic
AGCTACAAATTGTGATGTGT+GGG	0.604681	5.3:+382280	MS.gene024979:CDS
AAGCTACAAATTGTGATGTG+TGG	0.622283	5.3:+382279	MS.gene024979:CDS
TTGGTGAAGTATAATGACAA+AGG	0.632256	5.3:+382503	MS.gene024979:CDS
ACAAAGGACAGTTGATAGAG+TGG	0.633105	5.3:+382519	MS.gene024979:CDS
CAGTACACATGGAACCGAAG+TGG	0.667775	5.3:+382556	MS.gene024979:CDS
ATAGAAATAATTTCGATACG+AGG	0.746208	5.3:-381946	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATGATACACTTGAAATAT+GGG	+	chr5.3:382343-382362	MS.gene024979:CDS	20.0%
!!!	GAAATTATTTCTATGGTTTT+GGG	+	chr5.3:381955-381974	MS.gene024979:CDS	20.0%
!	AATACATGGAAAGAAATTGA+GGG	+	chr5.3:382074-382093	MS.gene024979:CDS	25.0%
!	ATAGAAATAATTTCGATACG+AGG	-	chr5.3:381949-381968	None:intergenic	25.0%
!	ATGCTTAGTATTAGCTAATT+TGG	-	chr5.3:382030-382049	None:intergenic	25.0%
!	ATTAGCTAATACTAAGCATT+TGG	+	chr5.3:382031-382050	MS.gene024979:intron	25.0%
!	CTAATGATACACTTGAAATA+TGG	+	chr5.3:382342-382361	MS.gene024979:CDS	25.0%
!	CTTCATAGTCAATATCAATT+GGG	-	chr5.3:382262-382281	None:intergenic	25.0%
!	TAATACATGGAAAGAAATTG+AGG	+	chr5.3:382073-382092	MS.gene024979:CDS	25.0%
!	TGCTTAGTATTAGCTAATTT+GGG	-	chr5.3:382029-382048	None:intergenic	25.0%
!!	ACTTTTTGTAGAACATATTG+GGG	-	chr5.3:382450-382469	None:intergenic	25.0%
!!	TGCCTTTGATTTAATCAAAA+GGG	+	chr5.3:382217-382236	MS.gene024979:CDS	25.0%
!!	TTGCCTTTGATTTAATCAAA+AGG	+	chr5.3:382216-382235	MS.gene024979:CDS	25.0%
!!!	CACTTTTTGTAGAACATATT+GGG	-	chr5.3:382451-382470	None:intergenic	25.0%
!!!	CGAAATTATTTCTATGGTTT+TGG	+	chr5.3:381954-381973	MS.gene024979:CDS	25.0%
!!!	TCGTATCGAAATTATTTCTA+TGG	+	chr5.3:381948-381967	MS.gene024979:CDS	25.0%
!!!	TTCCCTTTTGATTAAATCAA+AGG	-	chr5.3:382222-382241	None:intergenic	25.0%
	ACAAAAAGTGGTGATATCAT+TGG	+	chr5.3:382461-382480	MS.gene024979:CDS	30.0%
	CAGTAGAGGAATTGATATAA+GGG	-	chr5.3:382109-382128	None:intergenic	30.0%
	CCAATATGTTCTACAAAAAG+TGG	+	chr5.3:382449-382468	MS.gene024979:CDS	30.0%
	GCTTAGTATTAGCTAATTTG+GGG	-	chr5.3:382028-382047	None:intergenic	30.0%
	GCTTCATAGTCAATATCAAT+TGG	-	chr5.3:382263-382282	None:intergenic	30.0%
	TCAGTAGAGGAATTGATATA+AGG	-	chr5.3:382110-382129	None:intergenic	30.0%
	TGGAGAATTTCTCAGTATAT+GGG	+	chr5.3:382307-382326	MS.gene024979:CDS	30.0%
	TTGGAGAATTTCTCAGTATA+TGG	+	chr5.3:382306-382325	MS.gene024979:CDS	30.0%
	TTGGTGAAGTATAATGACAA+AGG	+	chr5.3:382503-382522	MS.gene024979:CDS	30.0%
!	ATAACAGGCTCTCTTTTTAA+TGG	+	chr5.3:382140-382159	MS.gene024979:CDS	30.0%
!	TAACAGGCTCTCTTTTTAAT+GGG	+	chr5.3:382141-382160	MS.gene024979:CDS	30.0%
!	TTTTTAATGGGGCTATTCAT+TGG	+	chr5.3:382153-382172	MS.gene024979:CDS	30.0%
!!	AAAAAGAGAGCCTGTTATTT+TGG	-	chr5.3:382138-382157	None:intergenic	30.0%
!!!	AAAAGAGAGCCTGTTATTTT+GGG	-	chr5.3:382137-382156	None:intergenic	30.0%
!!!	ACTCTTGTTTTGTCTATTGA+CGG	+	chr5.3:382404-382423	MS.gene024979:CDS	30.0%
!!!	CCACTTTTTGTAGAACATAT+TGG	-	chr5.3:382452-382471	None:intergenic	30.0%
	AACAGAAGATGGATGGAAAT+TGG	+	chr5.3:382484-382503	MS.gene024979:CDS	35.0%
	AAGCTACAAATTGTGATGTG+TGG	+	chr5.3:382279-382298	MS.gene024979:CDS	35.0%
	AATACAAAGTGCATTCCTCT+TGG	+	chr5.3:382375-382394	MS.gene024979:CDS	35.0%
	AATTGTGATGTGTGGGTATT+TGG	+	chr5.3:382287-382306	MS.gene024979:CDS	35.0%
	ACTGATTACCCCAAAATAAC+AGG	+	chr5.3:382125-382144	MS.gene024979:CDS	35.0%
	AGCTACAAATTGTGATGTGT+GGG	+	chr5.3:382280-382299	MS.gene024979:CDS	35.0%
	GATATCATTGGAACAGAAGA+TGG	+	chr5.3:382473-382492	MS.gene024979:CDS	35.0%
	GTCAACTGATGATTACTTCT+TGG	+	chr5.3:381986-382005	MS.gene024979:intron	35.0%
	TACTATTCTGACAGTACACA+TGG	+	chr5.3:382545-382564	MS.gene024979:CDS	35.0%
	TCTCATTCAGAGCTAATACA+TGG	+	chr5.3:382060-382079	MS.gene024979:CDS	35.0%
!	AACAAGAGTTTTTGTCCAAG+AGG	-	chr5.3:382393-382412	None:intergenic	35.0%
!	AACAGGCTCTCTTTTTAATG+GGG	+	chr5.3:382142-382161	MS.gene024979:CDS	35.0%
!	ATTTCTCAGTATATGGGCTA+TGG	+	chr5.3:382313-382332	MS.gene024979:CDS	35.0%
!!!	AAAGAGAGCCTGTTATTTTG+GGG	-	chr5.3:382136-382155	None:intergenic	35.0%
!!!	TATTTTGGGGTAATCAGTAG+AGG	-	chr5.3:382123-382142	None:intergenic	35.0%
!!!	TTTCTATGGTTTTGGGTATG+AGG	+	chr5.3:381962-381981	MS.gene024979:intron	35.0%
	CTCTGTATAAAGAGCCACTT+CGG	-	chr5.3:382573-382592	None:intergenic	40.0%
	TATTGGGGAAAACAGCTTAG+TGG	-	chr5.3:382435-382454	None:intergenic	40.0%
	TCATTGGAACAGAAGATGGA+TGG	+	chr5.3:382477-382496	MS.gene024979:CDS	40.0%
	TCGTCACGATCATTTACGAA+TGG	+	chr5.3:382184-382203	MS.gene024979:CDS	40.0%
!!	ACAAAGGACAGTTGATAGAG+TGG	+	chr5.3:382519-382538	MS.gene024979:CDS	40.0%
	AAGCTTGGTCACTGTCACCA+GGG	-	chr5.3:382610-382629	None:intergenic	50.0%
	CAGTACACATGGAACCGAAG+TGG	+	chr5.3:382556-382575	MS.gene024979:CDS	50.0%
	TAAGCTTGGTCACTGTCACC+AGG	-	chr5.3:382611-382630	None:intergenic	50.0%
	GAGTCTCTGCTTTCACTCCC+TGG	+	chr5.3:382590-382609	MS.gene024979:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	381940	382631	381940	ID=MS.gene024979
chr5.3	mRNA	381940	382631	381940	ID=MS.gene024979.t1;Parent=MS.gene024979
chr5.3	exon	381940	381976	381940	ID=MS.gene024979.t1.exon1;Parent=MS.gene024979.t1
chr5.3	CDS	381940	381976	381940	ID=cds.MS.gene024979.t1;Parent=MS.gene024979.t1
chr5.3	exon	382036	382631	382036	ID=MS.gene024979.t1.exon2;Parent=MS.gene024979.t1
chr5.3	CDS	382036	382631	382036	ID=cds.MS.gene024979.t1;Parent=MS.gene024979.t1

Gene Sequence

>MS.gene024979

ATGGTTCCTCGTATCGAAATTATTTCTATGGTTTTGGGTATGAGGAGTCAACTGATGATTACTTCTTGGTGTCAATTTCTCATGACCCCAAATTAGCTAATACTAAGCATTTGGAGATTTTCTCATTCAGAGCTAATACATGGAAAGAAATTGAGGGTATTCACTGCCCTTATATCAATTCCTCTACTGATTACCCCAAAATAACAGGCTCTCTTTTTAATGGGGCTATTCATTGGTTCGCTTTTCGTCACGATCATTTACGAATGGATCTTATTCTTGCCTTTGATTTAATCAAAAGGGAACTTTTTGAGATTCATCTCCCAATTGATATTGACTATGAAGCTACAAATTGTGATGTGTGGGTATTTGGAGAATTTCTCAGTATATGGGCTATGGATTATGCTAATGATACACTTGAAATATGGGTGATGAAAGAATACAAAGTGCATTCCTCTTGGACAAAAACTCTTGTTTTGTCTATTGACGGCATTTCCACTAAGCTGTTTTCCCCAATATGTTCTACAAAAAGTGGTGATATCATTGGAACAGAAGATGGATGGAAATTGGTGAAGTATAATGACAAAGGACAGTTGATAGAGTGGCACTACTATTCTGACAGTACACATGGAACCGAAGTGGCTCTTTATACAGAGTCTCTGCTTTCACTCCCTGGTGACAGTGACCAAGCTTAA

Protein sequence

>MS.gene024979.t1

MVPRIEIISMVLANTKHLEIFSFRANTWKEIEGIHCPYINSSTDYPKITGSLFNGAIHWFAFRHDHLRMDLILAFDLIKRELFEIHLPIDIDYEATNCDVWVFGEFLSIWAMDYANDTLEIWVMKEYKVHSSWTKTLVLSIDGISTKLFSPICSTKSGDIIGTEDGWKLVKYNDKGQLIEWHYYSDSTHGTEVALYTESLLSLPGDSDQA