AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26829

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26829.t1 MTR_4g122850 83.871 155 25 0 1 155 223 377 2.36e-90 271
MS.gene26829.t1 MTR_4g094365 65.278 144 47 3 1 142 222 364 8.12e-55 179
MS.gene26829.t1 MTR_6g060650 63.194 144 45 6 1 141 234 372 4.00e-49 165
MS.gene26829.t1 MTR_3g034180 63.636 143 47 5 1 142 351 489 3.45e-48 165
MS.gene26829.t1 MTR_8g433040 65.248 141 44 4 3 142 228 364 3.71e-46 157
MS.gene26829.t1 MTR_8g032380 65.248 141 44 4 3 142 228 364 3.71e-46 157
MS.gene26829.t1 MTR_3g103020 63.194 144 47 5 1 141 237 377 5.05e-46 157
MS.gene26829.t1 MTR_4g116320 60.714 140 49 5 3 139 119 255 1.09e-44 150
MS.gene26829.t1 MTR_4g117720 61.644 146 46 7 3 141 235 377 2.07e-44 153
MS.gene26829.t1 MTR_8g433030 64.234 137 43 5 3 137 205 337 2.68e-44 151
MS.gene26829.t1 MTR_4g116330 58.741 143 53 5 3 141 239 379 5.16e-44 152
MS.gene26829.t1 MTR_8g032390 64.234 137 43 5 3 137 238 370 1.05e-43 150
MS.gene26829.t1 MTR_4g109280 62.069 145 46 7 1 141 219 358 4.04e-43 149
MS.gene26829.t1 MTR_4g109270 59.859 142 51 5 3 141 225 363 2.35e-42 147
MS.gene26829.t1 MTR_8g040935 58.451 142 53 5 4 141 68 207 4.90e-42 142
MS.gene26829.t1 MTR_5g097210 53.642 151 67 3 3 153 227 374 1.25e-40 143
MS.gene26829.t1 MTR_1g055175 52.113 142 63 4 2 141 62 200 2.25e-40 137
MS.gene26829.t1 MTR_4g117870 54.348 138 56 2 5 142 137 267 3.78e-40 139
MS.gene26829.t1 MTR_1g055165 52.113 142 63 4 2 141 179 317 5.34e-39 137
MS.gene26829.t1 MTR_3g034130 58.140 129 50 4 1 128 237 362 1.04e-38 137
MS.gene26829.t1 MTR_1g055195 52.027 148 65 5 3 148 341 484 9.97e-37 134
MS.gene26829.t1 MTR_4g117770 55.172 145 58 5 3 142 225 367 4.11e-36 130
MS.gene26829.t1 MTR_4g117810 55.172 145 58 5 3 142 225 367 4.11e-36 130
MS.gene26829.t1 MTR_4g117780 54.483 145 59 5 3 142 225 367 7.88e-36 130
MS.gene26829.t1 MTR_3g034160 58.741 143 54 5 1 142 237 375 1.44e-35 129
MS.gene26829.t1 MTR_4g118360 58.772 114 42 4 30 141 15 125 5.10e-35 121
MS.gene26829.t1 MTR_4g023380 49.701 167 52 8 3 142 218 379 9.82e-35 127
MS.gene26829.t1 MTR_4g023130 57.746 142 51 7 3 141 177 312 2.55e-34 125
MS.gene26829.t1 MTR_4g122860 51.799 139 57 4 20 152 196 330 3.91e-34 125
MS.gene26829.t1 MTR_4g117850 57.246 138 50 7 3 135 240 373 7.44e-34 125
MS.gene26829.t1 MTR_4g023090 50.314 159 55 9 3 142 233 386 8.87e-34 125
MS.gene26829.t1 MTR_6g463430 50.685 146 60 6 1 142 65 202 5.62e-33 118
MS.gene26829.t1 MTR_4g023080 55.634 142 54 7 3 141 218 353 9.99e-33 121
MS.gene26829.t1 MTR_4g118380 58.400 125 39 6 1 115 236 357 3.08e-32 120
MS.gene26829.t1 MTR_1g055135 48.966 145 66 5 2 141 233 374 4.90e-32 120
MS.gene26829.t1 MTR_4g118400 55.072 138 44 7 1 136 173 294 1.01e-31 117
MS.gene26829.t1 MTR_4g023070 49.677 155 57 7 3 141 220 369 2.71e-31 118
MS.gene26829.t1 MTR_5g023000 59.375 96 37 2 47 141 4 98 7.21e-31 110
MS.gene26829.t1 MTR_4g021785 54.930 142 55 7 3 141 219 354 8.26e-31 116
MS.gene26829.t1 MTR_4g023190 54.110 146 53 9 3 140 218 357 1.33e-30 116
MS.gene26829.t1 MTR_4g118370 48.872 133 64 4 6 138 128 256 8.82e-30 112
MS.gene26829.t1 MTR_4g023150 54.110 146 53 9 3 140 219 358 9.33e-30 114
MS.gene26829.t1 MTR_4g117750 58.182 110 43 3 33 140 373 481 2.58e-29 114
MS.gene26829.t1 MTR_4g117750 47.222 144 67 4 1 138 215 355 6.24e-25 102
MS.gene26829.t1 MTR_4g023120 48.077 156 60 7 3 142 220 370 3.28e-29 112
MS.gene26829.t1 MTR_4g023200 52.740 146 55 9 3 140 219 358 6.39e-29 111
MS.gene26829.t1 MTR_1g055250 42.857 154 83 5 2 155 131 279 4.98e-28 108
MS.gene26829.t1 MTR_5g070130 48.980 147 67 7 3 144 236 379 2.08e-26 105
MS.gene26829.t1 MTR_5g070088 48.571 140 67 5 1 137 243 380 4.69e-26 104
MS.gene26829.t1 MTR_4g116330 53.153 111 47 4 35 141 231 340 1.80e-25 102
MS.gene26829.t1 MTR_5g070080 50.360 139 64 5 1 137 245 380 1.94e-25 102
MS.gene26829.t1 MTR_7g079450 44.366 142 72 7 1 141 1 136 4.49e-24 93.6
MS.gene26829.t1 MTR_8g102520 42.958 142 74 6 3 141 184 321 5.87e-24 97.8
MS.gene26829.t1 MTR_4g023440 55.670 97 37 4 48 142 240 332 6.58e-23 95.1
MS.gene26829.t1 MTR_7g079400 41.781 146 74 6 3 141 195 336 1.52e-20 88.6
MS.gene26829.t1 MTR_4g117530 52.632 95 38 4 49 141 163 252 2.60e-20 86.7
MS.gene26829.t1 MTR_7g117720 56.044 91 34 3 51 136 182 271 3.49e-19 84.0
MS.gene26829.t1 MTR_8g013005 66.102 59 19 1 83 141 1 58 5.73e-18 75.5
MS.gene26829.t1 MTR_4g122840 43.066 137 40 6 8 142 164 264 7.71e-18 80.1
MS.gene26829.t1 MTR_8g098830 44.348 115 57 6 3 115 89 198 1.29e-17 79.0
MS.gene26829.t1 MTR_7g079370 42.857 140 70 7 1 136 217 350 3.20e-17 79.7
MS.gene26829.t1 MTR_4g121580 44.068 118 49 7 19 132 235 339 7.49e-15 73.2
MS.gene26829.t1 MTR_4g114700 53.012 83 34 3 55 133 137 218 5.20e-14 69.3
MS.gene26829.t1 MTR_4g023430 53.012 83 32 4 65 142 142 222 8.25e-14 68.6
MS.gene26829.t1 MTR_4g109290 64.151 53 18 1 89 141 136 187 5.40e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGAATTTCTCAGTCTT+TGG 0.205269 8.1:-8049668 MS.gene26829:CDS
TATTGCGGTTTGTGGGTATT+TGG 0.223766 8.1:-8049687 MS.gene26829:CDS
CACTCTTTGTAGAGCATATA+GGG 0.234683 8.1:+8049532 None:intergenic
AATTGTTGCCTTTGATTTGA+TGG 0.277898 8.1:-8049766 MS.gene26829:CDS
ACAAAGAGTGGTGACATTAT+TGG 0.289112 8.1:-8049519 MS.gene26829:CDS
ATTGGAACAGATGGTGGTTC+TGG 0.314767 8.1:-8049501 MS.gene26829:CDS
TGGAGAATTTCTCAGTCTTT+GGG 0.343451 8.1:-8049667 MS.gene26829:CDS
TTCATAACGTCGAGTGAGAT+TGG 0.354545 8.1:-8047204 MS.gene26829:CDS
CCACTCTTTGTAGAGCATAT+AGG 0.395958 8.1:+8049531 None:intergenic
AACCGCAATATGTAGTTTGA+TGG 0.396935 8.1:+8049700 None:intergenic
ATTCCAAGTTGCATTCATCT+TGG 0.407888 8.1:-8049602 MS.gene26829:CDS
TCTCAGTCTTTGGGCTATGA+AGG 0.418139 8.1:-8049658 MS.gene26829:CDS
AAACTACATATTGCGGTTTG+TGG 0.437699 8.1:-8049695 MS.gene26829:CDS
GGATTGGTGAAATATTCTAA+TGG 0.442441 8.1:-8049480 MS.gene26829:CDS
CTCTGTATACATAGCCACTT+TGG 0.447885 8.1:+8049407 None:intergenic
TTGATGGAAAGGAAACTGTT+AGG 0.456333 8.1:-8049750 MS.gene26829:CDS
CTCAGTCTTTGGGCTATGAA+GGG 0.456919 8.1:-8049657 MS.gene26829:CDS
TCATAACGTCGAGTGAGATT+GGG 0.470373 8.1:-8047203 MS.gene26829:CDS
AACTACATATTGCGGTTTGT+GGG 0.473166 8.1:-8049694 MS.gene26829:CDS
GACGATGATGGAGGAGAAGA+TGG 0.477751 8.1:-8048280 MS.gene26829:CDS
GAGCATATAGGGGAAAAGTT+AGG 0.478841 8.1:+8049543 None:intergenic
TTTCCTTTCCATCAAATCAA+AGG 0.490696 8.1:+8049758 None:intergenic
TGAATTTGCTCATGGTCACC+AGG 0.491110 8.1:+8049369 None:intergenic
CATCTTTATGAATTTGCTCA+TGG 0.492372 8.1:+8049361 None:intergenic
TCCAACTGAATTGTTATAGT+AGG 0.504691 8.1:+8049431 None:intergenic
GTTTGATGGATAAAATCATC+AGG 0.513173 8.1:+8049714 None:intergenic
CATGATTCAGATGACGATGA+TGG 0.518842 8.1:-8048292 MS.gene26829:CDS
GGCGTAACATATTTCAAATG+TGG 0.531690 8.1:-8049635 MS.gene26829:CDS
TCCTACTATAACAATTCAGT+TGG 0.538812 8.1:-8049432 MS.gene26829:CDS
GAGTCTCTACTTTCACTCCC+TGG 0.547203 8.1:-8049387 MS.gene26829:CDS
GATGAATGTGAGGAAATTGA+AGG 0.547568 8.1:-8048376 MS.gene26829:CDS
TGAGATTGGGCATTCGAAGA+AGG 0.550254 8.1:-8047190 MS.gene26829:CDS
GGACTAAGACTCTTGATCTA+CGG 0.550298 8.1:-8049581 MS.gene26829:CDS
ATCCATCAAACTACATATTG+CGG 0.552718 8.1:-8049702 MS.gene26829:CDS
AACAGATGGTGGTTCTGGAT+TGG 0.556410 8.1:-8049496 MS.gene26829:CDS
TCAGTCTTTGGGCTATGAAG+GGG 0.560298 8.1:-8049656 MS.gene26829:CDS
TTGCCTTTGATTTGATGGAA+AGG 0.562152 8.1:-8049761 MS.gene26829:CDS
AGTCCAAGATGAATGCAACT+TGG 0.565089 8.1:+8049599 None:intergenic
TGGATAAAATCATCAGGAAG+AGG 0.569512 8.1:+8049720 None:intergenic
CCTATATGCTCTACAAAGAG+TGG 0.572496 8.1:-8049531 MS.gene26829:CDS
GCGTAACATATTTCAAATGT+GGG 0.575536 8.1:-8049634 MS.gene26829:CDS
CTGAATTGTTATAGTAGGAG+TGG 0.580575 8.1:+8049436 None:intergenic
GATTGGGCATTCGAAGAAGG+TGG 0.609976 8.1:-8047187 MS.gene26829:CDS
ATTGGGCATTCGAAGAAGGT+GGG 0.619848 8.1:-8047186 MS.gene26829:CDS
GGTGACATTATTGGAACAGA+TGG 0.620913 8.1:-8049510 MS.gene26829:CDS
GTAGGAGGAAGATGAATGTG+AGG 0.621010 8.1:-8048386 MS.gene26829:intron
GACATTATTGGAACAGATGG+TGG 0.626070 8.1:-8049507 MS.gene26829:CDS
ATAAAATCATCAGGAAGAGG+AGG 0.640290 8.1:+8049723 None:intergenic
CAATTCAGTTGGATCCAAAG+TGG 0.644141 8.1:-8049421 MS.gene26829:CDS
GATTCAGATGACGATGATGG+AGG 0.644307 8.1:-8048289 MS.gene26829:CDS
ACTCTTTGTAGAGCATATAG+GGG 0.650669 8.1:+8049533 None:intergenic
GAATTTGCTCATGGTCACCA+GGG 0.661249 8.1:+8049370 None:intergenic
CAATGATGATGACAATGAGA+AGG 0.673231 8.1:-8048350 MS.gene26829:CDS
TGATGACAATGAGAAGGCTG+AGG 0.682895 8.1:-8048344 MS.gene26829:CDS
ACTGCTGCAGAGACTAACAG+AGG 0.727701 8.1:-8047229 MS.gene26829:CDS
TGACACAAACAAGAAGAACG+AGG 0.756690 8.1:-8049340 MS.gene26829:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAATATAAATAAAA+TGG + chr8.1:8047629-8047648 None:intergenic 0.0%
!! GATAAAATGAAATTAATTTA+AGG + chr8.1:8049402-8049421 None:intergenic 10.0%
!! AAAGTATAAAATTCTGTAAT+TGG - chr8.1:8048158-8048177 MS.gene26829:intron 15.0%
!! AAATATAAATAAAATGGTGA+AGG + chr8.1:8047623-8047642 None:intergenic 15.0%
!! AAGTATAAAATTCTGTAATT+GGG - chr8.1:8048159-8048178 MS.gene26829:intron 15.0%
!! ATAAAAATATCTACTTAGAA+AGG + chr8.1:8049034-8049053 None:intergenic 15.0%
!! ATTAAATGCTTATATCAAAA+AGG + chr8.1:8049007-8049026 None:intergenic 15.0%
!!! ATATTGTATTTTTATCTCTT+GGG - chr8.1:8047649-8047668 MS.gene26829:intron 15.0%
!!! CTTTTTAAATTTCAAATGTA+TGG - chr8.1:8049481-8049500 MS.gene26829:CDS 15.0%
!!! TATATTGTATTTTTATCTCT+TGG - chr8.1:8047648-8047667 MS.gene26829:intron 15.0%
!! TTAAACATTTCACAACATAT+TGG + chr8.1:8047747-8047766 None:intergenic 20.0%
!! TTAGGAATCAATAGAATAAA+GGG + chr8.1:8048249-8048268 None:intergenic 20.0%
!!! AAATTAGTTTTTTTTCTTCC+TGG + chr8.1:8047913-8047932 None:intergenic 20.0%
!!! ATTTAAAAAGCATATGCAAA+TGG + chr8.1:8049471-8049490 None:intergenic 20.0%
!!! CATGTTTTTTTTGTCTTATT+TGG - chr8.1:8049445-8049464 MS.gene26829:CDS 20.0%
!!! GTTGCTATATTGTATTTTTA+TGG - chr8.1:8048798-8048817 MS.gene26829:intron 20.0%
!!! TTTGTTTTTCAAAAAGCTAA+AGG - chr8.1:8049367-8049386 MS.gene26829:CDS 20.0%
!!! TTTTATATGGTAAACTAATC+TGG - chr8.1:8047796-8047815 MS.gene26829:intron 20.0%
! AATTTGTATTATGCAAGTCA+TGG + chr8.1:8048390-8048409 None:intergenic 25.0%
! ACAAACAATTTGTGAAAGAA+AGG + chr8.1:8048519-8048538 None:intergenic 25.0%
! ATAGTTTAATTGCAATATGC+AGG + chr8.1:8049335-8049354 None:intergenic 25.0%
! CAAACAATTTGTGAAAGAAA+GGG + chr8.1:8048518-8048537 None:intergenic 25.0%
! GTTAGGAATCAATAGAATAA+AGG + chr8.1:8048250-8048269 None:intergenic 25.0%
! TAAATTCAGCAATTCTGTTT+CGG - chr8.1:8049523-8049542 MS.gene26829:CDS 25.0%
! TAACTAATAAAGTGATATCG+TGG - chr8.1:8049068-8049087 MS.gene26829:intron 25.0%
! TAGGAATCAATAGAATAAAG+GGG + chr8.1:8048248-8048267 None:intergenic 25.0%
! TAGTTTAATTGCAATATGCA+GGG + chr8.1:8049334-8049353 None:intergenic 25.0%
! TCAAAAAGCTAAAGGAAATA+CGG - chr8.1:8049375-8049394 MS.gene26829:CDS 25.0%
! TGCAAAGAGAAACAAAAAAT+AGG - chr8.1:8049217-8049236 MS.gene26829:intron 25.0%
! TTAGGTTTACTATGTTTATC+AGG - chr8.1:8048831-8048850 MS.gene26829:intron 25.0%
! TTCTTTCACAAATTGTTTGT+AGG - chr8.1:8048519-8048538 MS.gene26829:intron 25.0%
!! ACAGCGAATTTTTCATTATA+AGG - chr8.1:8049173-8049192 MS.gene26829:intron 25.0%
!! TTTTATGGTGCAGTATTATT+AGG - chr8.1:8048813-8048832 MS.gene26829:intron 25.0%
!!! AAATTTTAGTGGACTCTTAA+CGG - chr8.1:8047860-8047879 MS.gene26829:intron 25.0%
!!! CTGCTTGAAATTGTTTTATA+TGG - chr8.1:8047783-8047802 MS.gene26829:intron 25.0%
!!! GAATGTTTTTAAAGGACAAA+TGG + chr8.1:8048741-8048760 None:intergenic 25.0%
!!! GTTTTGTTCTCAAATTTTAG+TGG - chr8.1:8047849-8047868 MS.gene26829:intron 25.0%
AAATTCAGCAATTCTGTTTC+GGG - chr8.1:8049524-8049543 MS.gene26829:CDS 30.0%
AATCCAAACTATGCCAATAA+AGG + chr8.1:8048324-8048343 None:intergenic 30.0%
ATCCATCAAACTACATATTG+CGG - chr8.1:8047221-8047240 MS.gene26829:CDS 30.0%
ATTCCTTTATTGGCATAGTT+TGG - chr8.1:8048318-8048337 MS.gene26829:CDS 30.0%
ATTGCTGAATTTATCTTCGT+CGG + chr8.1:8049516-8049535 None:intergenic 30.0%
GCGTAACATATTTCAAATGT+GGG - chr8.1:8047289-8047308 MS.gene26829:intron 30.0%
GGATGTAATTGTAACAAGTT+AGG + chr8.1:8048267-8048286 None:intergenic 30.0%
GGTTAATTTATGCATGTTGA+AGG - chr8.1:8047817-8047836 MS.gene26829:intron 30.0%
TCAATTTAATGAGCAATGCT+TGG - chr8.1:8047932-8047951 MS.gene26829:intron 30.0%
TCCAACTGAATTGTTATAGT+AGG + chr8.1:8047495-8047514 None:intergenic 30.0%
TCCTACTATAACAATTCAGT+TGG - chr8.1:8047491-8047510 MS.gene26829:intron 30.0%
TGCAAACTTAAGTAGAGAAA+AGG + chr8.1:8048093-8048112 None:intergenic 30.0%
TGTGATACTCTAGTAATTCA+TGG - chr8.1:8048767-8048786 MS.gene26829:intron 30.0%
TTTCACAAATTGTTTGTAGG+AGG - chr8.1:8048522-8048541 MS.gene26829:intron 30.0%
TTTCCTTTCCATCAAATCAA+AGG + chr8.1:8047168-8047187 None:intergenic 30.0%
! AACCTATGTTTGGGTTAATT+TGG - chr8.1:8048198-8048217 MS.gene26829:intron 30.0%
! CATCTTTATGAATTTGCTCA+TGG + chr8.1:8047565-8047584 None:intergenic 30.0%
! CTTCATTGAATTAAGAGCAT+CGG + chr8.1:8048004-8048023 None:intergenic 30.0%
! CTTTTGTCTACCAACAATTT+CGG + chr8.1:8048965-8048984 None:intergenic 30.0%
! GGATTGGTGAAATATTCTAA+TGG - chr8.1:8047443-8047462 MS.gene26829:intron 30.0%
! GTTTGATGGATAAAATCATC+AGG + chr8.1:8047212-8047231 None:intergenic 30.0%
!! AATTGTTGCCTTTGATTTGA+TGG - chr8.1:8047157-8047176 MS.gene26829:CDS 30.0%
!! TTGTATTTTTATCTCTTGGG+TGG - chr8.1:8047652-8047671 MS.gene26829:intron 30.0%
!!! CATCTCTGGAATGTTTTTAA+AGG + chr8.1:8048749-8048768 None:intergenic 30.0%
AAACTACATATTGCGGTTTG+TGG - chr8.1:8047228-8047247 MS.gene26829:CDS 35.0%
AACCGCAATATGTAGTTTGA+TGG + chr8.1:8047226-8047245 None:intergenic 35.0%
AACTACATATTGCGGTTTGT+GGG - chr8.1:8047229-8047248 MS.gene26829:CDS 35.0%
AAGGAATGAGTCCACTATAT+CGG + chr8.1:8048305-8048324 None:intergenic 35.0%
AATTCAGCAATTCTGTTTCG+GGG - chr8.1:8049525-8049544 MS.gene26829:CDS 35.0%
ACAAAGAGTGGTGACATTAT+TGG - chr8.1:8047404-8047423 MS.gene26829:intron 35.0%
ACTCTTTGTAGAGCATATAG+GGG + chr8.1:8047393-8047412 None:intergenic 35.0%
AGTGCAAGGTTAAAAACATG+TGG - chr8.1:8048856-8048875 MS.gene26829:intron 35.0%
ATAAAATCATCAGGAAGAGG+AGG + chr8.1:8047203-8047222 None:intergenic 35.0%
ATGTTTATCAGGTAAGTGCA+AGG - chr8.1:8048842-8048861 MS.gene26829:intron 35.0%
ATTCCAAGTTGCATTCATCT+TGG - chr8.1:8047321-8047340 MS.gene26829:intron 35.0%
CAAGGTTAAAAACATGTGGT+AGG - chr8.1:8048860-8048879 MS.gene26829:intron 35.0%
CACTCTTTGTAGAGCATATA+GGG + chr8.1:8047394-8047413 None:intergenic 35.0%
CATGCAAATACTTCACACTA+AGG + chr8.1:8049610-8049629 None:intergenic 35.0%
CTGAATTGTTATAGTAGGAG+TGG + chr8.1:8047490-8047509 None:intergenic 35.0%
GAATGGACAAACTCATTTAG+AGG + chr8.1:8048683-8048702 None:intergenic 35.0%
GATGAATGTGAGGAAATTGA+AGG - chr8.1:8048547-8048566 MS.gene26829:intron 35.0%
GGCGTAACATATTTCAAATG+TGG - chr8.1:8047288-8047307 MS.gene26829:intron 35.0%
GTATTATGCAAGTCATGGTT+TGG + chr8.1:8048385-8048404 None:intergenic 35.0%
TAAAAACATGTGGTAGGACA+AGG - chr8.1:8048866-8048885 MS.gene26829:intron 35.0%
TAACCCAAACATAGGTTCAT+GGG + chr8.1:8048195-8048214 None:intergenic 35.0%
TCAGTAAGAAATGCTACTAG+AGG - chr8.1:8048123-8048142 MS.gene26829:intron 35.0%
TGCATGTTGAAGGAAAAAGA+AGG - chr8.1:8047827-8047846 MS.gene26829:intron 35.0%
TGCCAAATTAACCCAAACAT+AGG + chr8.1:8048203-8048222 None:intergenic 35.0%
TGGAGAATTTCTCAGTCTTT+GGG - chr8.1:8047256-8047275 MS.gene26829:intron 35.0%
TGGATAAAATCATCAGGAAG+AGG + chr8.1:8047206-8047225 None:intergenic 35.0%
TTAACCCAAACATAGGTTCA+TGG + chr8.1:8048196-8048215 None:intergenic 35.0%
TTATCTTCCACCCATTTCTT+AGG - chr8.1:8048905-8048924 MS.gene26829:intron 35.0%
TTCTTGTACTCCGAAATTGT+TGG - chr8.1:8048952-8048971 MS.gene26829:intron 35.0%
TTGATGGAAAGGAAACTGTT+AGG - chr8.1:8047173-8047192 MS.gene26829:CDS 35.0%
TTGGAGAATTTCTCAGTCTT+TGG - chr8.1:8047255-8047274 MS.gene26829:intron 35.0%
! ATAGGCAAACTTACGTTTTC+TGG - chr8.1:8049235-8049254 MS.gene26829:intron 35.0%
! CAATGATGATGACAATGAGA+AGG - chr8.1:8048573-8048592 MS.gene26829:intron 35.0%
! CTTAGTGTGAAGTATTTGCA+TGG - chr8.1:8049608-8049627 MS.gene26829:CDS 35.0%
! TTACTAGAGTATCACATCTC+TGG + chr8.1:8048763-8048782 None:intergenic 35.0%
! TTGTCTGACCTCTTTCTTTT+TGG + chr8.1:8048610-8048629 None:intergenic 35.0%
!! AGGACAAATGGTGTTATGTT+TGG + chr8.1:8048729-8048748 None:intergenic 35.0%
!! TAGTGGACTCATTCCTTTAT+TGG - chr8.1:8048308-8048327 MS.gene26829:CDS 35.0%
!! TTGCCTTTGATTTGATGGAA+AGG - chr8.1:8047162-8047181 MS.gene26829:CDS 35.0%
ACATATTGGATCAGCTTGTG+TGG + chr8.1:8047733-8047752 None:intergenic 40.0%
ACATCTACCCACCTAAGAAA+TGG + chr8.1:8048919-8048938 None:intergenic 40.0%
ACCAGTTCTTCAGCAAAGAA+TGG + chr8.1:8048700-8048719 None:intergenic 40.0%
AGGTTGCACCAAAAAGAAAG+AGG - chr8.1:8048599-8048618 MS.gene26829:intron 40.0%
AGTCCAAGATGAATGCAACT+TGG + chr8.1:8047327-8047346 None:intergenic 40.0%
ATTCGCTGTTCACTATATGC+TGG + chr8.1:8049162-8049181 None:intergenic 40.0%
CAATTCAGTTGGATCCAAAG+TGG - chr8.1:8047502-8047521 MS.gene26829:intron 40.0%
CATCTACCCACCTAAGAAAT+GGG + chr8.1:8048918-8048937 None:intergenic 40.0%
CATGATTCAGATGACGATGA+TGG - chr8.1:8048631-8048650 MS.gene26829:intron 40.0%
CCACTCTTTGTAGAGCATAT+AGG + chr8.1:8047395-8047414 None:intergenic 40.0%
CCTATATGCTCTACAAAGAG+TGG - chr8.1:8047392-8047411 MS.gene26829:intron 40.0%
CTCTGTATACATAGCCACTT+TGG + chr8.1:8047519-8047538 None:intergenic 40.0%
GACATTATTGGAACAGATGG+TGG - chr8.1:8047416-8047435 MS.gene26829:intron 40.0%
GAGCATATAGGGGAAAAGTT+AGG + chr8.1:8047383-8047402 None:intergenic 40.0%
GGACTAAGACTCTTGATCTA+CGG - chr8.1:8047342-8047361 MS.gene26829:intron 40.0%
GGTGACATTATTGGAACAGA+TGG - chr8.1:8047413-8047432 MS.gene26829:intron 40.0%
TAGGACAAGGTTTACAGTTC+AGG - chr8.1:8048879-8048898 MS.gene26829:intron 40.0%
TATTGCGGTTTGTGGGTATT+TGG - chr8.1:8047236-8047255 MS.gene26829:CDS 40.0%
TCATAACGTCGAGTGAGATT+GGG - chr8.1:8049720-8049739 MS.gene26829:CDS 40.0%
TCATTTCTCTGTTGCAAACC+AGG - chr8.1:8047892-8047911 MS.gene26829:intron 40.0%
TCCATTCTTTGCTGAAGAAC+TGG - chr8.1:8048696-8048715 MS.gene26829:intron 40.0%
TCGTGGTGCGATTTCATTAA+CGG - chr8.1:8049085-8049104 MS.gene26829:intron 40.0%
TGACACAAACAAGAAGAACG+AGG - chr8.1:8047583-8047602 MS.gene26829:intron 40.0%
TGACCCATGAACCTATGTTT+GGG - chr8.1:8048189-8048208 MS.gene26829:intron 40.0%
TTCATAACGTCGAGTGAGAT+TGG - chr8.1:8049719-8049738 MS.gene26829:CDS 40.0%
! GTGAAGTATTTGCATGGTAG+CGG - chr8.1:8049614-8049633 MS.gene26829:CDS 40.0%
! TATCGGAGTTCTGGTAGAAA+AGG + chr8.1:8048288-8048307 None:intergenic 40.0%
! TGAAGTATTTGCATGGTAGC+GGG - chr8.1:8049615-8049634 MS.gene26829:CDS 40.0%
!!! TTTTAGTGGACTCTTAACGG+TGG - chr8.1:8047863-8047882 MS.gene26829:intron 40.0%
AGACTGTGTAGAGTACGGTT+AGG - chr8.1:8049576-8049595 MS.gene26829:CDS 45.0%
AGTCCACTATATCGGAGTTC+TGG + chr8.1:8048297-8048316 None:intergenic 45.0%
ATCCAACTGTGGTTAGACGA+TGG + chr8.1:8049654-8049673 None:intergenic 45.0%
ATTGGGCATTCGAAGAAGGT+GGG - chr8.1:8049737-8049756 MS.gene26829:CDS 45.0%
CGTGGTGCGATTTCATTAAC+GGG - chr8.1:8049086-8049105 MS.gene26829:intron 45.0%
CTACCAGAACTCCGATATAG+TGG - chr8.1:8048291-8048310 MS.gene26829:CDS 45.0%
CTCAGTCTTTGGGCTATGAA+GGG - chr8.1:8047266-8047285 MS.gene26829:intron 45.0%
CTTCCACCCATTTCTTAGGT+GGG - chr8.1:8048909-8048928 MS.gene26829:intron 45.0%
GGATGAGACTGTGTAGAGTA+CGG - chr8.1:8049571-8049590 MS.gene26829:CDS 45.0%
GTAGGAGGAAGATGAATGTG+AGG - chr8.1:8048537-8048556 MS.gene26829:intron 45.0%
GTGACCCATGAACCTATGTT+TGG - chr8.1:8048188-8048207 MS.gene26829:intron 45.0%
TACACAGTCTCATCCAGATC+TGG + chr8.1:8049566-8049585 None:intergenic 45.0%
TACCATCGTCTAACCACAGT+TGG - chr8.1:8049649-8049668 MS.gene26829:CDS 45.0%
TCAGTCTTTGGGCTATGAAG+GGG - chr8.1:8047267-8047286 MS.gene26829:intron 45.0%
TCTCAGTCTTTGGGCTATGA+AGG - chr8.1:8047265-8047284 MS.gene26829:intron 45.0%
TCTTCCACCCATTTCTTAGG+TGG - chr8.1:8048908-8048927 MS.gene26829:intron 45.0%
TGAGATTGGGCATTCGAAGA+AGG - chr8.1:8049733-8049752 MS.gene26829:CDS 45.0%
TGATGACAATGAGAAGGCTG+AGG - chr8.1:8048579-8048598 MS.gene26829:intron 45.0%
! ATTGGAACAGATGGTGGTTC+TGG - chr8.1:8047422-8047441 MS.gene26829:intron 45.0%
! CAAGTCATGGTTTGGAGTTC+TGG + chr8.1:8048377-8048396 None:intergenic 45.0%
! GAATTTGCTCATGGTCACCA+GGG + chr8.1:8047556-8047575 None:intergenic 45.0%
! GATTCAGATGACGATGATGG+AGG - chr8.1:8048634-8048653 MS.gene26829:intron 45.0%
! TCTTGGGTGGCTGCATTTTA+GGG - chr8.1:8047665-8047684 MS.gene26829:intron 45.0%
! TGAATTTGCTCATGGTCACC+AGG + chr8.1:8047557-8047576 None:intergenic 45.0%
!! AACAGATGGTGGTTCTGGAT+TGG - chr8.1:8047427-8047446 MS.gene26829:intron 45.0%
AACGTTCCAGCATCCAACTG+TGG + chr8.1:8049665-8049684 None:intergenic 50.0%
ACTGCTGCAGAGACTAACAG+AGG - chr8.1:8049694-8049713 MS.gene26829:CDS 50.0%
CTACCCACCTAAGAAATGGG+TGG + chr8.1:8048915-8048934 None:intergenic 50.0%
GAGTCTCTACTTTCACTCCC+TGG - chr8.1:8047536-8047555 MS.gene26829:intron 50.0%
GATTGGGCATTCGAAGAAGG+TGG - chr8.1:8049736-8049755 MS.gene26829:CDS 50.0%
GTCTAACCACAGTTGGATGC+TGG - chr8.1:8049656-8049675 MS.gene26829:CDS 50.0%
GTTGGATGCTGGAACGTTGT+AGG - chr8.1:8049667-8049686 MS.gene26829:CDS 50.0%
! CTCTTGGGTGGCTGCATTTT+AGG - chr8.1:8047664-8047683 MS.gene26829:intron 50.0%
!! GACGATGATGGAGGAGAAGA+TGG - chr8.1:8048643-8048662 MS.gene26829:intron 50.0%
CATCCAGATCTGGACCGACT+CGG + chr8.1:8049556-8049575 None:intergenic 55.0%
GTTTCGGGGATGAACCGAGT+CGG - chr8.1:8049539-8049558 MS.gene26829:CDS 55.0%
GAACCGAGTCGGTCCAGATC+TGG - chr8.1:8049550-8049569 MS.gene26829:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 8047149 8049796 8047149 ID=MS.gene26829
chr8.1 mRNA 8047149 8049796 8047149 ID=MS.gene26829.t1;Parent=MS.gene26829
chr8.1 exon 8049341 8049796 8049341 ID=MS.gene26829.t1.exon1;Parent=MS.gene26829.t1
chr8.1 CDS 8049341 8049796 8049341 ID=cds.MS.gene26829.t1;Parent=MS.gene26829.t1
chr8.1 exon 8048273 8048404 8048273 ID=MS.gene26829.t1.exon2;Parent=MS.gene26829.t1
chr8.1 CDS 8048273 8048404 8048273 ID=cds.MS.gene26829.t1;Parent=MS.gene26829.t1
chr8.1 exon 8047149 8047256 8047149 ID=MS.gene26829.t1.exon3;Parent=MS.gene26829.t1
chr8.1 CDS 8047149 8047256 8047149 ID=cds.MS.gene26829.t1;Parent=MS.gene26829.t1
Gene Sequence

>MS.gene26829

ATGTTTGTAATTGTTGCCTTTGATTTGATGGAAAGGAAACTGTTAGGCATGCCTCCTCTTCCTGATGATTTTATCCATCAAACTACATATTGCGGTTTGTGGGTATTTGGAGAATTTCTCAGTCTTTGGGCTATGAAGGGGCGTAACATATTTCAAATGTGGGTGATGAAAGATTCCAAGTTGCATTCATCTTGGACTAAGACTCTTGATCTACGGATTGATAATGTCATTCCTAACTTTTCCCCTATATGCTCTACAAAGAGTGGTGACATTATTGGAACAGATGGTGGTTCTGGATTGGTGAAATATTCTAATGGTAAAGTACAACTCTTAGACTACCACTCCTACTATAACAATTCAGTTGGATCCAAAGTGGCTATGTATACAGAGTCTCTACTTTCACTCCCTGGTGACCATGAGCAAATTCATAAAGATGACACAAACAAGAAGAACGAGGTTTTGAAATATTCTCCTTCACCATTTTATTTATATTTATAATTATATTGTATTTTTATCTCTTGGGTGGCTGCATTTTAGGGTAATATGTTTTTTAACTGCTTTTTGTAACATAAGCTAGTATGCCACACAAGCTGATCCAATATGTTGTGAAATGTTTAAATGTATGTTGTTGTCACTGCTTGAAATTGTTTTATATGGTAAACTAATCTGGTTAATTTATGCATGTTGAAGGAAAAAGAAGGTTTTGTTCTCAAATTTTAGTGGACTCTTAACGGTGGCATTTGTCATTTCTCTGTTGCAAACCAGGAAGAAAAAAAACTAATTTCAATTTAATGAGCAATGCTTGGATTTATAAGACTTAATTAGATCAGTAGAAACATCAATATTAAATAACCGATGCTCTTAATTCAATGAAGAAAGCTAAGAAAAACAAGAGAGATTTTTTGTTAAAATGTATGTAACACATCAACATGTCTTGATGTCCTTTTCTCTACTTAAGTTTGCAAAGTTACATATCAGTAAGAAATGCTACTAGAGGTATCATTCTTTTAAAGTATAAAATTCTGTAATTGGGTGTATAGTGACCCATGAACCTATGTTTGGGTTAATTTGGCAGCTATCATTTTTATTTTTTTCACCCCTTTATTCTATTGATTCCTAACTTGTTACAATTACATCCTTTTCTACCAGAACTCCGATATAGTGGACTCATTCCTTTATTGGCATAGTTTGGATTACTTATATTTTGAAAGTTAAAGTTTTGCTACCAGAACTCCAAACCATGACTTGCATAATACAAATTTTAGTCTTTTGCATCAATTTTGCTGCTTAAACTTATATTATCAATCTAATGTAAATTTGTAATATGTAATTCAATTTTTCTGTATGACTTGTTGCATATGAGTCACCCTTTCTTTCACAAATTGTTTGTAGGAGGAAGATGAATGTGAGGAAATTGAAGGCGACAATGATGATGACAATGAGAAGGCTGAGGTTGCACCAAAAAGAAAGAGGTCAGACAAACATGATTCAGATGACGATGATGGAGGAGAAGATGGCGTAAGAGTAAGATCCTCTAAATGAGTTTGTCCATTCTTTGCTGAAGAACTGGTCAGCTACCAAACATAACACCATTTGTCCTTTAAAAACATTCCAGAGATGTGATACTCTAGTAATTCATGGAAGTGTTTGTTGCTATATTGTATTTTTATGGTGCAGTATTATTAGGTTTACTATGTTTATCAGGTAAGTGCAAGGTTAAAAACATGTGGTAGGACAAGGTTTACAGTTCAGGTTTTTATCTTCCACCCATTTCTTAGGTGGGTAGATGTTGTTCATTATTGTTTCTTGTACTCCGAAATTGTTGGTAGACAAAAGTCTTTTTTGTTGTGTAAAACCTTTTTGATATAAGCATTTAATCATGCCTTTCTAAGTAGATATTTTTATGAAATATTTTGAACTAACTAATAAAGTGATATCGTGGTGCGATTTCATTAACGGGTTCATGTTGATGCGAGTTTCATGAACTAAAGTTGTATTGTTGTGATAAGTCCAGCATATAGTGAACAGCGAATTTTTCATTATAAGGAGTGTAAACATGCTGACTTCTTGCAAAGAGAAACAAAAAATAGGCAAACTTACGTTTTCTGGAGTGAAACAAATTATGAAATAAAGTCTTTTTTTTTTTTTTAAGTTGAGCAAGTGAGAAATGTTTGAACTCTAACCCTGCATATTGCAATTAAACTATTTTTTTTTAATATTTGTTTTTCAAAAAGCTAAAGGAAATACGGTCCTTAAATTAATTTCATTTTATCATTTAATTCATTTTTTGTTTCTTCATGTTTTTTTTGTCTTATTTGGCCATTTGCATATGCTTTTTAAATTTCAAATGTATGGTTTTATTCTCCGACGAAGATAAATTCAGCAATTCTGTTTCGGGGATGAACCGAGTCGGTCCAGATCTGGATGAGACTGTGTAGAGTACGGTTAGGAACAAAATCCTTAGTGTGAAGTATTTGCATGGTAGCGGGACATGTGTTGTTACCATCGTCTAACCACAGTTGGATGCTGGAACGTTGTAGGTGACACTGCTGCAGAGACTAACAGAGGATTTCATAACGTCGAGTGAGATTGGGCATTCGAAGAAGGTGGGAAGAGTGATATGCATAGATCAACGATTCTTTCTCTAA
Protein sequence

>MS.gene26829.t1

MFVIVAFDLMERKLLGMPPLPDDFIHQTTYCGLWVFGEFLSLWAMKGRNIFQMWVMKDSKLHSSWTKTLDLRIDNVIPNFSPICSTKSGDIIGTDGGSGLVKYSNGKVQLLDYHSYYNNSVGSKVAMYTESLLSLPGDHEQIHKDDTNKKNEEEDECEEIEGDNDDDNEKAEVAPKRKRSDKHDSDDDDGGEDGVRVTLLQRLTEDFITSSEIGHSKKVGRVICIDQRFFL