AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036664


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036664.t1 MTR_4g116320 94.444 216 12 0 34 249 43 258 4.58e-152 424
MS.gene036664.t1 MTR_4g116330 63.855 249 83 3 1 247 135 378 2.21e-103 305
MS.gene036664.t1 MTR_3g103020 62.451 253 82 5 1 246 129 375 6.72e-101 298
MS.gene036664.t1 MTR_6g060650 61.111 252 85 6 1 246 126 370 5.83e-96 286
MS.gene036664.t1 MTR_4g117720 60.156 256 83 7 1 244 124 372 1.98e-91 274
MS.gene036664.t1 MTR_4g023130 61.446 249 78 7 1 246 77 310 7.77e-91 271
MS.gene036664.t1 MTR_4g023080 59.839 249 82 7 1 246 118 351 6.11e-89 267
MS.gene036664.t1 MTR_4g117850 58.871 248 92 5 1 242 130 373 3.04e-87 264
MS.gene036664.t1 MTR_3g034180 58.462 260 87 9 1 246 234 486 8.62e-84 258
MS.gene036664.t1 MTR_4g109270 57.874 254 87 8 1 246 120 361 1.12e-83 254
MS.gene036664.t1 MTR_4g023090 54.198 262 92 7 1 243 126 378 5.20e-83 253
MS.gene036664.t1 MTR_3g034160 58.462 260 87 7 1 246 120 372 5.21e-83 253
MS.gene036664.t1 MTR_4g109280 60.484 248 90 6 2 246 114 356 1.23e-82 251
MS.gene036664.t1 MTR_3g034130 57.430 249 86 8 1 235 120 362 3.13e-81 248
MS.gene036664.t1 MTR_4g118380 57.511 233 81 6 2 220 129 357 8.33e-80 244
MS.gene036664.t1 MTR_4g021785 56.000 250 91 7 1 246 118 352 1.12e-79 244
MS.gene036664.t1 MTR_4g094365 55.378 251 99 6 1 245 117 360 1.37e-79 244
MS.gene036664.t1 MTR_4g023380 52.768 271 75 8 1 243 126 371 5.19e-78 240
MS.gene036664.t1 MTR_4g122850 54.582 251 100 9 3 244 114 359 7.94e-78 240
MS.gene036664.t1 MTR_4g023190 54.545 253 93 7 1 246 119 356 6.97e-76 234
MS.gene036664.t1 MTR_4g116330 53.815 249 69 4 1 247 135 339 3.31e-75 232
MS.gene036664.t1 MTR_4g023200 52.964 253 98 7 1 246 119 357 1.14e-73 228
MS.gene036664.t1 MTR_4g117780 53.101 258 97 8 1 246 119 364 1.64e-73 228
MS.gene036664.t1 MTR_4g023150 52.569 253 99 7 1 246 119 357 6.31e-73 226
MS.gene036664.t1 MTR_4g117770 51.550 258 101 8 1 246 119 364 2.18e-72 225
MS.gene036664.t1 MTR_4g117810 51.550 258 101 8 1 246 119 364 2.18e-72 225
MS.gene036664.t1 MTR_5g070080 53.441 247 106 6 1 243 138 379 3.66e-71 223
MS.gene036664.t1 MTR_4g023070 50.000 264 106 7 1 246 112 367 7.21e-71 222
MS.gene036664.t1 MTR_4g118400 50.410 244 87 5 2 243 83 294 4.14e-70 217
MS.gene036664.t1 MTR_8g032390 53.200 250 104 7 1 243 126 369 2.73e-69 218
MS.gene036664.t1 MTR_5g070130 51.575 254 108 7 1 243 121 370 3.09e-69 218
MS.gene036664.t1 MTR_4g023120 49.242 264 108 7 1 246 112 367 2.21e-67 213
MS.gene036664.t1 MTR_5g097210 51.200 250 111 5 2 247 119 361 2.77e-67 213
MS.gene036664.t1 MTR_4g117870 50.000 246 83 6 1 245 57 263 2.82e-66 206
MS.gene036664.t1 MTR_5g070088 49.600 250 114 6 1 243 135 379 2.11e-64 205
MS.gene036664.t1 MTR_8g040935 57.071 198 80 4 54 246 8 205 3.37e-64 199
MS.gene036664.t1 MTR_4g118370 50.000 254 89 9 2 246 33 257 7.97e-64 200
MS.gene036664.t1 MTR_4g023440 47.984 248 80 6 1 246 129 329 5.35e-63 200
MS.gene036664.t1 MTR_8g433040 49.802 253 104 6 1 246 125 361 1.08e-62 200
MS.gene036664.t1 MTR_8g032380 49.802 253 104 6 1 246 125 361 1.08e-62 200
MS.gene036664.t1 MTR_8g433030 55.505 218 87 6 30 243 125 336 1.99e-62 199
MS.gene036664.t1 MTR_1g055135 45.946 259 116 6 1 245 123 371 2.77e-61 197
MS.gene036664.t1 MTR_4g117750 50.769 260 102 8 1 245 107 355 4.59e-61 199
MS.gene036664.t1 MTR_4g117750 62.609 115 35 3 139 249 373 483 8.93e-33 124
MS.gene036664.t1 MTR_1g055195 47.104 259 104 8 1 246 237 475 7.98e-61 199
MS.gene036664.t1 MTR_6g463430 53.846 195 83 4 54 246 10 199 4.58e-56 178
MS.gene036664.t1 MTR_4g117530 44.355 248 86 6 7 246 47 250 4.08e-53 172
MS.gene036664.t1 MTR_7g079370 42.857 259 128 8 2 244 97 351 1.29e-51 172
MS.gene036664.t1 MTR_4g121580 45.703 256 100 10 1 247 126 351 1.64e-51 172
MS.gene036664.t1 MTR_4g114700 44.130 247 81 7 2 240 21 218 3.50e-51 167
MS.gene036664.t1 MTR_8g102520 43.600 250 126 10 2 243 74 316 4.48e-50 167
MS.gene036664.t1 MTR_4g117430 57.616 151 55 3 1 151 14 155 5.69e-50 161
MS.gene036664.t1 MTR_7g079400 42.857 259 121 10 1 243 84 331 2.99e-49 165
MS.gene036664.t1 MTR_1g055250 45.070 213 104 6 29 236 49 253 2.10e-48 162
MS.gene036664.t1 MTR_1g055175 46.465 198 87 5 60 246 9 198 5.32e-46 152
MS.gene036664.t1 MTR_1g055165 41.057 246 92 6 2 246 122 315 1.07e-45 155
MS.gene036664.t1 MTR_4g118360 61.905 126 44 2 124 247 1 124 7.19e-44 144
MS.gene036664.t1 MTR_8g013010 53.642 151 61 3 1 148 165 309 1.36e-42 147
MS.gene036664.t1 MTR_4g116340 59.664 119 40 2 2 114 131 247 3.51e-39 136
MS.gene036664.t1 MTR_4g122860 44.974 189 65 7 64 243 156 314 3.26e-35 128
MS.gene036664.t1 MTR_5g023000 66.327 98 29 2 151 246 1 96 1.11e-33 117
MS.gene036664.t1 MTR_8g098830 45.783 166 75 7 60 216 35 194 2.10e-33 121
MS.gene036664.t1 MTR_7g079420 36.782 261 110 12 1 244 917 1139 4.44e-33 127
MS.gene036664.t1 MTR_2g048580 34.921 252 125 11 1 244 117 337 4.70e-29 112
MS.gene036664.t1 MTR_7g079450 45.926 135 68 3 109 243 2 131 3.20e-25 97.1
MS.gene036664.t1 MTR_6g034720 44.355 124 65 1 13 132 53 176 3.08e-24 96.7
MS.gene036664.t1 MTR_3g007410 32.161 199 117 7 3 194 167 354 3.59e-22 94.4
MS.gene036664.t1 MTR_7g117720 58.947 95 35 3 154 244 178 272 1.38e-21 90.9
MS.gene036664.t1 MTR_7g117720 53.012 83 35 2 3 82 105 186 1.72e-18 82.8
MS.gene036664.t1 MTR_3g007360 31.658 199 118 7 3 194 167 354 1.65e-21 92.8
MS.gene036664.t1 MTR_4g133170 27.830 212 130 6 4 198 108 313 2.92e-21 92.0
MS.gene036664.t1 MTR_4g030830 27.016 248 141 10 1 217 132 370 1.11e-20 90.1
MS.gene036664.t1 MTR_2g028160 28.319 226 140 8 1 208 130 351 2.12e-20 89.7
MS.gene036664.t1 MTR_2g028130 28.910 211 130 7 1 195 130 336 2.99e-20 89.4
MS.gene036664.t1 MTR_4g023430 56.962 79 31 2 171 246 141 219 9.59e-19 82.4
MS.gene036664.t1 MTR_5g011200 32.787 183 105 8 3 178 134 305 1.01e-18 84.7
MS.gene036664.t1 MTR_4g070550 29.167 192 113 7 1 174 125 311 1.69e-18 84.0
MS.gene036664.t1 MTR_8g013005 69.492 59 14 2 189 246 1 56 3.40e-18 76.3
MS.gene036664.t1 MTR_0667s0010 25.974 231 148 7 1 212 118 344 6.21e-18 82.4
MS.gene036664.t1 MTR_3g009310 32.778 180 106 7 3 179 160 327 6.81e-18 82.4
MS.gene036664.t1 MTR_4g122840 43.511 131 38 4 115 244 164 259 1.23e-17 80.1
MS.gene036664.t1 MTR_5g097350 25.896 251 166 8 3 245 148 386 3.32e-17 80.5
MS.gene036664.t1 MTR_7g013590 31.579 190 116 8 1 185 146 326 4.35e-17 80.1
MS.gene036664.t1 MTR_2g426020 26.592 267 170 10 1 247 124 384 4.82e-17 80.1
MS.gene036664.t1 MTR_7g407070 31.472 197 119 8 3 187 154 346 5.16e-17 79.7
MS.gene036664.t1 MTR_2g024110 27.273 187 112 6 4 174 111 289 1.03e-16 79.0
MS.gene036664.t1 MTR_7g070880 29.362 235 123 10 1 198 147 375 1.15e-16 79.0
MS.gene036664.t1 MTR_2g026010 27.919 197 119 6 1 178 105 297 1.23e-16 79.0
MS.gene036664.t1 MTR_7g056820 26.522 230 137 9 28 232 151 373 1.44e-16 78.6
MS.gene036664.t1 MTR_1g068835 28.723 188 119 6 4 179 108 292 2.30e-16 77.8
MS.gene036664.t1 MTR_2g021150 28.502 207 127 9 3 198 132 328 3.08e-16 77.4
MS.gene036664.t1 MTR_4g028510 26.522 230 136 6 3 208 139 359 8.94e-16 76.6
MS.gene036664.t1 MTR_2g078870 30.460 174 100 7 3 174 78 232 9.30e-16 75.5
MS.gene036664.t1 MTR_3g007330 31.383 188 113 7 3 185 158 334 9.53e-16 76.3
MS.gene036664.t1 MTR_3g083010 26.568 271 164 8 1 243 132 395 9.64e-16 76.3
MS.gene036664.t1 MTR_4g055060 31.720 186 111 7 1 179 146 322 1.75e-15 75.5
MS.gene036664.t1 MTR_8g464770 27.778 252 161 8 3 243 136 377 1.90e-15 75.1
MS.gene036664.t1 MTR_3g006670 31.720 186 100 9 1 174 162 332 2.49e-15 75.1
MS.gene036664.t1 MTR_2g025960 25.455 220 141 7 1 202 29 243 4.01e-15 73.9
MS.gene036664.t1 MTR_4g109290 61.538 52 20 0 1 52 91 142 5.27e-15 71.6
MS.gene036664.t1 MTR_4g020000 28.505 214 129 6 19 210 103 314 7.39e-15 73.6
MS.gene036664.t1 MTR_2g021050 26.882 186 116 6 28 198 130 310 1.50e-14 72.8
MS.gene036664.t1 MTR_7g070440 29.592 196 117 5 3 183 121 310 1.51e-14 72.8
MS.gene036664.t1 MTR_6g090180 26.766 269 161 10 3 242 173 434 1.51e-14 72.8
MS.gene036664.t1 MTR_3g009240 31.492 181 113 6 1 179 146 317 1.59e-14 72.8
MS.gene036664.t1 MTR_3g036335 27.381 252 151 11 3 241 162 394 1.64e-14 72.8
MS.gene036664.t1 MTR_6g088385 27.899 276 154 12 2 243 56 320 1.71e-14 72.0
MS.gene036664.t1 MTR_4g023100 66.071 56 15 1 191 246 65 116 1.92e-14 68.2
MS.gene036664.t1 MTR_2g028140 26.702 191 119 7 1 174 131 317 2.25e-14 72.4
MS.gene036664.t1 MTR_5g057790 30.168 179 110 6 3 178 164 330 2.43e-14 72.0
MS.gene036664.t1 MTR_1g068875 27.273 187 122 6 4 179 108 291 3.06e-14 71.6
MS.gene036664.t1 MTR_3g024130 31.522 184 109 8 3 179 78 251 3.47e-14 71.2
MS.gene036664.t1 MTR_4g108820 27.322 183 121 4 3 185 125 295 4.09e-14 70.9
MS.gene036664.t1 MTR_3g013770 31.148 183 112 6 1 178 150 323 4.09e-14 71.6
MS.gene036664.t1 MTR_1g068860 29.032 155 104 4 29 179 142 294 4.74e-14 71.2
MS.gene036664.t1 MTR_1g054725 26.459 257 154 12 4 241 135 375 5.88e-14 70.9
MS.gene036664.t1 MTR_4g030980 26.396 197 126 4 1 182 165 357 7.43e-14 70.9
MS.gene036664.t1 MTR_3g010390 29.255 188 122 6 1 180 153 337 7.47e-14 70.9
MS.gene036664.t1 MTR_3g013740 31.443 194 101 11 1 178 165 342 8.26e-14 70.5
MS.gene036664.t1 MTR_2g021190 25.781 256 155 9 3 241 135 372 1.16e-13 70.1
MS.gene036664.t1 MTR_2g025420 25.463 216 134 7 3 195 132 343 1.20e-13 70.1
MS.gene036664.t1 MTR_6g086825 26.619 278 160 11 3 246 193 460 1.92e-13 69.7
MS.gene036664.t1 MTR_8g099460 28.846 156 105 4 25 178 150 301 2.05e-13 69.3
MS.gene036664.t1 MTR_3g030320 27.094 203 124 7 3 196 62 249 3.31e-13 68.2
MS.gene036664.t1 MTR_5g057710 30.726 179 109 6 3 178 164 330 4.03e-13 68.6
MS.gene036664.t1 MTR_1g056710 29.730 185 111 8 3 178 144 318 4.67e-13 68.2
MS.gene036664.t1 MTR_3g014540 30.387 181 114 7 3 178 142 315 5.22e-13 68.2
MS.gene036664.t1 MTR_2g024100 28.042 189 115 5 3 174 122 306 5.25e-13 68.2
MS.gene036664.t1 MTR_2g425980 27.000 200 115 7 1 178 122 312 5.79e-13 68.2
MS.gene036664.t1 MTR_0044s0300 29.630 189 107 8 3 186 155 322 6.20e-13 68.2
MS.gene036664.t1 MTR_4g024890 24.895 237 152 8 1 220 129 356 6.27e-13 67.8
MS.gene036664.t1 MTR_4g013175 26.275 255 142 11 1 219 150 394 7.57e-13 67.8
MS.gene036664.t1 MTR_2g021800 25.368 272 166 9 3 244 150 414 1.07e-12 67.4
MS.gene036664.t1 MTR_0054s0090 25.547 274 165 10 1 242 136 402 1.30e-12 67.0
MS.gene036664.t1 MTR_1g055375 29.787 188 116 8 3 186 124 299 1.32e-12 67.0
MS.gene036664.t1 MTR_2g426070 26.596 188 121 6 3 178 131 313 1.33e-12 67.0
MS.gene036664.t1 MTR_3g436150 30.500 200 120 9 1 189 151 342 1.65e-12 66.6
MS.gene036664.t1 MTR_1g050542 23.288 219 147 6 3 210 166 374 2.63e-12 66.2
MS.gene036664.t1 MTR_1g055065 29.032 186 114 7 5 178 39 218 2.91e-12 65.5
MS.gene036664.t1 MTR_4g028660 26.038 265 164 9 3 242 138 395 3.02e-12 65.9
MS.gene036664.t1 MTR_4g027450 26.038 265 164 9 3 242 138 395 3.02e-12 65.9
MS.gene036664.t1 MTR_4g013185 26.667 255 141 12 1 219 150 394 3.21e-12 65.9
MS.gene036664.t1 MTR_0054s0100 25.182 274 166 10 1 242 138 404 4.07e-12 65.5
MS.gene036664.t1 MTR_6g007150 29.282 181 111 10 1 174 91 261 4.32e-12 65.5
MS.gene036664.t1 MTR_1g097490 24.444 225 157 7 3 224 162 376 4.47e-12 65.5
MS.gene036664.t1 MTR_3g007390 29.221 154 97 6 29 179 2 146 5.24e-12 63.5
MS.gene036664.t1 MTR_2g046920 26.630 184 122 5 3 183 139 312 5.42e-12 65.1
MS.gene036664.t1 MTR_2g043400 28.063 253 120 13 3 216 157 386 5.55e-12 65.1
MS.gene036664.t1 MTR_3g083640 26.404 178 113 7 3 178 173 334 6.34e-12 65.1
MS.gene036664.t1 MTR_2g031640 25.389 193 126 6 1 178 106 295 6.97e-12 64.7
MS.gene036664.t1 MTR_3g010590 27.746 173 103 6 2 174 156 306 7.47e-12 64.7
MS.gene036664.t1 MTR_1g115160 26.486 185 120 7 3 185 136 306 8.82e-12 64.7
MS.gene036664.t1 MTR_0129s0050 26.316 285 156 11 1 242 131 404 1.04e-11 64.3
MS.gene036664.t1 MTR_6g065980 28.161 174 105 8 3 174 127 282 1.98e-11 63.5
MS.gene036664.t1 MTR_7g066850 24.898 245 146 8 2 219 141 374 2.11e-11 63.5
MS.gene036664.t1 MTR_2g038680 23.913 276 164 10 3 242 142 407 2.16e-11 63.5
MS.gene036664.t1 MTR_2g021155 29.944 177 114 8 3 174 711 882 2.18e-11 63.9
MS.gene036664.t1 MTR_7g060940 26.374 273 146 11 1 240 142 392 2.22e-11 63.5
MS.gene036664.t1 MTR_0129s0070 26.446 242 141 12 3 217 138 369 2.55e-11 63.2
MS.gene036664.t1 MTR_7g078900 26.295 251 144 11 3 220 149 391 2.79e-11 63.2
MS.gene036664.t1 MTR_3g011060 30.570 193 108 9 3 185 150 326 3.70e-11 62.8
MS.gene036664.t1 MTR_7g056003 25.703 249 137 9 1 216 142 375 5.54e-11 62.4
MS.gene036664.t1 MTR_5g009060 29.348 184 111 9 3 174 162 338 5.67e-11 62.4
MS.gene036664.t1 MTR_7g077970 28.708 209 119 9 3 187 137 339 6.89e-11 62.0
MS.gene036664.t1 MTR_1g088120 27.411 197 115 8 3 179 138 326 7.23e-11 62.0
MS.gene036664.t1 MTR_1g094210 25.600 250 156 10 1 241 170 398 7.50e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036664.t1 AT3G06240 29.008 262 141 14 1 241 182 419 1.55e-15 75.9
MS.gene036664.t1 AT4G22390 24.268 239 155 10 1 216 108 343 1.09e-11 64.3
MS.gene036664.t1 AT4G22390 24.268 239 155 10 1 216 108 343 1.42e-11 63.9

Find 56 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGCATTTGATTTAA+TGG 0.134412 8.1:+10718640 MS.gene036664:CDS
TATAGTCATTTGTGGGTATT+TGG 0.170693 8.1:+10718716 MS.gene036664:CDS
GCAGCATATTACTATGGTTT+TGG 0.206233 8.1:+10718383 MS.gene036664:CDS
AAAATAGCATAGTTGAAATA+TGG 0.236820 8.1:+10718771 MS.gene036664:CDS
TCATCAGGATAAAGCATATA+AGG 0.272694 8.1:-10718545 None:intergenic
TTCTAGAGCATAACTCATTC+TGG 0.272735 8.1:+10718954 MS.gene036664:CDS
ACTCTTAATTTGTCTATTGA+TGG 0.294325 8.1:+10718833 MS.gene036664:CDS
GAAATACCCGTGTCTCCTTT+TGG 0.333954 8.1:+10718347 MS.gene036664:CDS
GTAATATGCTGCATCTGAAT+TGG 0.353547 8.1:-10718372 None:intergenic
TCAGATGCAGCATATTACTA+TGG 0.363184 8.1:+10718377 MS.gene036664:CDS
CCAAGTAATCATCTGTTAAC+TGG 0.412624 8.1:-10718412 None:intergenic
GATTCAAGGCCAAAACCATC+TGG 0.437802 8.1:-10718689 None:intergenic
CCAGTTAACAGATGATTACT+TGG 0.444298 8.1:+10718412 MS.gene036664:CDS
AATGACTATATTCAGATTCA+AGG 0.447436 8.1:-10718703 None:intergenic
TAGTGGGGCTATTCATTGGT+TGG 0.452286 8.1:+10718589 MS.gene036664:CDS
TCCATGTCCAATTGGATCCC+TGG 0.453396 8.1:+10718982 MS.gene036664:CDS
CATCAGGATAAAGCATATAA+GGG 0.461790 8.1:-10718544 None:intergenic
GACCCTAGTCTATGCTCATC+AGG 0.468483 8.1:-10718560 None:intergenic
ATCTGAATATAGTCATTTGT+GGG 0.478762 8.1:+10718709 MS.gene036664:CDS
AAATAGCATAGTTGAAATAT+GGG 0.480715 8.1:+10718772 MS.gene036664:CDS
AATCTGAATATAGTCATTTG+TGG 0.482544 8.1:+10718708 MS.gene036664:CDS
AATACAAAGTGCACTCGTCT+TGG 0.485581 8.1:+10718804 MS.gene036664:CDS
TGGGACGGTCCATGTCCAAT+TGG 0.488340 8.1:+10718974 MS.gene036664:CDS
TGGAGAATTTCTCAGTCTAT+CGG 0.492329 8.1:+10718736 MS.gene036664:CDS
GGTGACATTATTGGAACAAA+TGG 0.492408 8.1:+10718893 MS.gene036664:CDS
ATGGTCACCAGGGATCCAAT+TGG 0.497354 8.1:-10718989 None:intergenic
ATTTCTCAGTCTATCGGCTA+TGG 0.499084 8.1:+10718742 MS.gene036664:CDS
TATTTCTTTGTTAGCTCCAG+TGG 0.500366 8.1:-10718330 None:intergenic
GGAGCATATAGGGGAAAAGT+AGG 0.504573 8.1:-10718861 None:intergenic
TCTAGAGCATAACTCATTCT+GGG 0.507717 8.1:+10718955 MS.gene036664:CDS
AGCATCAAAGTTTAGTACAT+AGG 0.509137 8.1:-10718447 None:intergenic
TCTTTGTTAGCTCCAGTGGA+TGG 0.512485 8.1:-10718326 None:intergenic
GCATCTGAATTGGAACCAAA+AGG 0.523585 8.1:-10718362 None:intergenic
TAGGGTAGCACATTGTCACT+AGG 0.543658 8.1:-10719037 None:intergenic
TATCCTGATGAGCATAGACT+AGG 0.549131 8.1:+10718557 MS.gene036664:CDS
TTGCATTTGATTTAATGGAA+AGG 0.552603 8.1:+10718645 MS.gene036664:CDS
GTTAACAGATGATTACTTGG+TGG 0.554811 8.1:+10718415 MS.gene036664:CDS
CATTTGATTTAATGGAAAGG+AGG 0.569257 8.1:+10718648 MS.gene036664:CDS
TATCTGTGGAATCCATCCAC+TGG 0.576516 8.1:+10718314 MS.gene036664:CDS
AAGCAGAGACTCTGTATACA+TGG 0.578494 8.1:-10719008 None:intergenic
TAGTACGTGGAAAGAACTTG+AGG 0.584159 8.1:+10718511 MS.gene036664:CDS
TAATCACGTTAATTCGCGAT+TGG 0.586340 8.1:+10718469 MS.gene036664:CDS
ACTCTGTATACATGGTCACC+AGG 0.593150 8.1:-10719000 None:intergenic
GAGCATATAGGGGAAAAGTA+GGG 0.598278 8.1:-10718860 None:intergenic
AGGGTAGCACATTGTCACTA+GGG 0.602323 8.1:-10719036 None:intergenic
ATCCAAACATCATGTATCTG+TGG 0.604307 8.1:+10718300 None:intergenic
GGATAAAGCATATAAGGGAA+CGG 0.605046 8.1:-10718539 None:intergenic
ACCAGGGATCCAATTGGACA+TGG 0.626716 8.1:-10718983 None:intergenic
ATCCTGATGAGCATAGACTA+GGG 0.632862 8.1:+10718558 MS.gene036664:CDS
GAGCATAACTCATTCTGGGA+CGG 0.638615 8.1:+10718959 MS.gene036664:CDS
CTCTGTATACATGGTCACCA+GGG 0.642272 8.1:-10718999 None:intergenic
TTGGAACCAAAAGGAGACAC+GGG 0.646621 8.1:-10718353 None:intergenic
AGTACGTGGAAAGAACTTGA+GGG 0.658652 8.1:+10718512 MS.gene036664:CDS
ATTGGAACCAAAAGGAGACA+CGG 0.667029 8.1:-10718354 None:intergenic
TCTCGTTGAGAGATAGTACG+TGG 0.669049 8.1:+10718498 MS.gene036664:CDS
TTGTTGAAGTATAACGACAA+AGG 0.682733 8.1:+10718926 MS.gene036664:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGCATAGTTGAAATA+TGG + chr8.1:10718771-10718790 MS.gene036664:CDS 20.0%
!! AAATAGCATAGTTGAAATAT+GGG + chr8.1:10718772-10718791 MS.gene036664:CDS 20.0%
!!! TATTGTTGCATTTGATTTAA+TGG + chr8.1:10718640-10718659 MS.gene036664:CDS 20.0%
! AATCTGAATATAGTCATTTG+TGG + chr8.1:10718708-10718727 MS.gene036664:CDS 25.0%
! AATGACTATATTCAGATTCA+AGG - chr8.1:10718706-10718725 None:intergenic 25.0%
! ATCTGAATATAGTCATTTGT+GGG + chr8.1:10718709-10718728 MS.gene036664:CDS 25.0%
!! TTGCATTTGATTTAATGGAA+AGG + chr8.1:10718645-10718664 MS.gene036664:CDS 25.0%
!! TTTTCACAATGATTTAGGAA+GGG + chr8.1:10718613-10718632 MS.gene036664:CDS 25.0%
!!! ACTCTTAATTTGTCTATTGA+TGG + chr8.1:10718833-10718852 MS.gene036664:CDS 25.0%
ACAAAAAGTGGTGACATTAT+TGG + chr8.1:10718884-10718903 MS.gene036664:CDS 30.0%
AGCATCAAAGTTTAGTACAT+AGG - chr8.1:10718450-10718469 None:intergenic 30.0%
CATCAGGATAAAGCATATAA+GGG - chr8.1:10718547-10718566 None:intergenic 30.0%
TATAGTCATTTGTGGGTATT+TGG + chr8.1:10718716-10718735 MS.gene036664:CDS 30.0%
TCATCAGGATAAAGCATATA+AGG - chr8.1:10718548-10718567 None:intergenic 30.0%
TTGTTGAAGTATAACGACAA+AGG + chr8.1:10718926-10718945 MS.gene036664:CDS 30.0%
! CAGCATATTACTATGGTTTT+GGG + chr8.1:10718384-10718403 MS.gene036664:CDS 30.0%
! CATTTGATTTAATGGAAAGG+AGG + chr8.1:10718648-10718667 MS.gene036664:CDS 30.0%
! CTTTTCACAATGATTTAGGA+AGG + chr8.1:10718612-10718631 MS.gene036664:CDS 30.0%
!! TTGGCTTTTCACAATGATTT+AGG + chr8.1:10718608-10718627 MS.gene036664:CDS 30.0%
!!! AATAATGTCACCACTTTTTG+TGG - chr8.1:10718885-10718904 None:intergenic 30.0%
CCAAGTAATCATCTGTTAAC+TGG - chr8.1:10718415-10718434 None:intergenic 35.0%
CCAGTTAACAGATGATTACT+TGG + chr8.1:10718412-10718431 MS.gene036664:CDS 35.0%
GGATAAAGCATATAAGGGAA+CGG - chr8.1:10718542-10718561 None:intergenic 35.0%
GGTGACATTATTGGAACAAA+TGG + chr8.1:10718893-10718912 MS.gene036664:CDS 35.0%
GTAATATGCTGCATCTGAAT+TGG - chr8.1:10718375-10718394 None:intergenic 35.0%
GTTAACAGATGATTACTTGG+TGG + chr8.1:10718415-10718434 MS.gene036664:CDS 35.0%
TAATCACGTTAATTCGCGAT+TGG + chr8.1:10718469-10718488 MS.gene036664:CDS 35.0%
TATTTCTTTGTTAGCTCCAG+TGG - chr8.1:10718333-10718352 None:intergenic 35.0%
TCAGATGCAGCATATTACTA+TGG + chr8.1:10718377-10718396 MS.gene036664:CDS 35.0%
TGGAGAATTTCTCAGTCTAT+CGG + chr8.1:10718736-10718755 MS.gene036664:CDS 35.0%
! ACTTTTTGTGGAGCATATAG+GGG - chr8.1:10718873-10718892 None:intergenic 35.0%
! ATGTCTTTTCCAGATGGTTT+TGG + chr8.1:10718680-10718699 MS.gene036664:CDS 35.0%
! GCAGCATATTACTATGGTTT+TGG + chr8.1:10718383-10718402 MS.gene036664:CDS 35.0%
! TCTAGAGCATAACTCATTCT+GGG + chr8.1:10718955-10718974 MS.gene036664:CDS 35.0%
! TTAGAGATGTCTTTTCCAGA+TGG + chr8.1:10718674-10718693 MS.gene036664:CDS 35.0%
!! CACTTTTTGTGGAGCATATA+GGG - chr8.1:10718874-10718893 None:intergenic 35.0%
!! TTCTAGAGCATAACTCATTC+TGG + chr8.1:10718954-10718973 MS.gene036664:CDS 35.0%
!! TTTTTAGTGGGGCTATTCAT+TGG + chr8.1:10718585-10718604 MS.gene036664:CDS 35.0%
AAGCAGAGACTCTGTATACA+TGG - chr8.1:10719011-10719030 None:intergenic 40.0%
AATACAAAGTGCACTCGTCT+TGG + chr8.1:10718804-10718823 MS.gene036664:CDS 40.0%
AGTACGTGGAAAGAACTTGA+GGG + chr8.1:10718512-10718531 MS.gene036664:CDS 40.0%
ATCCTGATGAGCATAGACTA+GGG + chr8.1:10718558-10718577 MS.gene036664:CDS 40.0%
ATTGGAACCAAAAGGAGACA+CGG - chr8.1:10718357-10718376 None:intergenic 40.0%
CCTATATGCTCCACAAAAAG+TGG + chr8.1:10718872-10718891 MS.gene036664:CDS 40.0%
GAGCATATAGGGGAAAAGTA+GGG - chr8.1:10718863-10718882 None:intergenic 40.0%
GCATCTGAATTGGAACCAAA+AGG - chr8.1:10718365-10718384 None:intergenic 40.0%
TAGTACGTGGAAAGAACTTG+AGG + chr8.1:10718511-10718530 MS.gene036664:CDS 40.0%
TATCCTGATGAGCATAGACT+AGG + chr8.1:10718557-10718576 MS.gene036664:CDS 40.0%
! ATTTCTCAGTCTATCGGCTA+TGG + chr8.1:10718742-10718761 MS.gene036664:CDS 40.0%
!!! ACTAGGGTCACTTTTTAGTG+GGG + chr8.1:10718574-10718593 MS.gene036664:CDS 40.0%
!!! AGACTAGGGTCACTTTTTAG+TGG + chr8.1:10718572-10718591 MS.gene036664:CDS 40.0%
!!! CCACTTTTTGTGGAGCATAT+AGG - chr8.1:10718875-10718894 None:intergenic 40.0%
!!! GACTAGGGTCACTTTTTAGT+GGG + chr8.1:10718573-10718592 MS.gene036664:CDS 40.0%
ACTCTGTATACATGGTCACC+AGG - chr8.1:10719003-10719022 None:intergenic 45.0%
AGGGTAGCACATTGTCACTA+GGG - chr8.1:10719039-10719058 None:intergenic 45.0%
CTCTGTATACATGGTCACCA+GGG - chr8.1:10719002-10719021 None:intergenic 45.0%
GATTCAAGGCCAAAACCATC+TGG - chr8.1:10718692-10718711 None:intergenic 45.0%
GGAGCATATAGGGGAAAAGT+AGG - chr8.1:10718864-10718883 None:intergenic 45.0%
TAGGGTAGCACATTGTCACT+AGG - chr8.1:10719040-10719059 None:intergenic 45.0%
TAGTGGGGCTATTCATTGGT+TGG + chr8.1:10718589-10718608 MS.gene036664:CDS 45.0%
TATCTGTGGAATCCATCCAC+TGG + chr8.1:10718314-10718333 MS.gene036664:CDS 45.0%
TCTCGTTGAGAGATAGTACG+TGG + chr8.1:10718498-10718517 MS.gene036664:CDS 45.0%
TCTTTGTTAGCTCCAGTGGA+TGG - chr8.1:10718329-10718348 None:intergenic 45.0%
TTGGAACCAAAAGGAGACAC+GGG - chr8.1:10718356-10718375 None:intergenic 45.0%
! GAAATACCCGTGTCTCCTTT+TGG + chr8.1:10718347-10718366 MS.gene036664:CDS 45.0%
! GAGCATAACTCATTCTGGGA+CGG + chr8.1:10718959-10718978 MS.gene036664:CDS 45.0%
ACCAGGGATCCAATTGGACA+TGG - chr8.1:10718986-10719005 None:intergenic 50.0%
ATGGTCACCAGGGATCCAAT+TGG - chr8.1:10718992-10719011 None:intergenic 50.0%
GACCCTAGTCTATGCTCATC+AGG - chr8.1:10718563-10718582 None:intergenic 50.0%
TCCATGTCCAATTGGATCCC+TGG + chr8.1:10718982-10719001 MS.gene036664:CDS 50.0%
TGGGACGGTCCATGTCCAAT+TGG + chr8.1:10718974-10718993 MS.gene036664:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 10718311 10719060 10718311 ID=MS.gene036664
chr8.1 mRNA 10718311 10719060 10718311 ID=MS.gene036664.t1;Parent=MS.gene036664
chr8.1 exon 10718311 10719060 10718311 ID=MS.gene036664.t1.exon1;Parent=MS.gene036664.t1
chr8.1 CDS 10718311 10719060 10718311 ID=cds.MS.gene036664.t1;Parent=MS.gene036664.t1
Gene Sequence

>MS.gene036664

ATGTATCTGTGGAATCCATCCACTGGAGCTAACAAAGAAATACCCGTGTCTCCTTTTGGTTCCAATTCAGATGCAGCATATTACTATGGTTTTGGGTATGACCAGTTAACAGATGATTACTTGGTGGTTTCATTCTCCTATGTACTAAACTTTGATGCTAATCACGTTAATTCGCGATTGGAGTTTTTCTCGTTGAGAGATAGTACGTGGAAAGAACTTGAGGGCACTCCGTTCCCTTATATGCTTTATCCTGATGAGCATAGACTAGGGTCACTTTTTAGTGGGGCTATTCATTGGTTGGCTTTTCACAATGATTTAGGAAGGGATGTTATTGTTGCATTTGATTTAATGGAAAGGAGGCTTTTAGAGATGTCTTTTCCAGATGGTTTTGGCCTTGAATCTGAATATAGTCATTTGTGGGTATTTGGAGAATTTCTCAGTCTATCGGCTATGGATCATGAAAATAGCATAGTTGAAATATGGGTGATGAAAGAATACAAAGTGCACTCGTCTTGGACTAAGACTCTTAATTTGTCTATTGATGGCATTCCCTACTTTTCCCCTATATGCTCCACAAAAAGTGGTGACATTATTGGAACAAATGGTGAAACTGAATTGTTGAAGTATAACGACAAAGGACAGCTTCTAGAGCATAACTCATTCTGGGACGGTCCATGTCCAATTGGATCCCTGGTGACCATGTATACAGAGTCTCTGCTTTCACTCCCTAGTGACAATGTGCTACCCTAA

Protein sequence

>MS.gene036664.t1

MYLWNPSTGANKEIPVSPFGSNSDAAYYYGFGYDQLTDDYLVVSFSYVLNFDANHVNSRLEFFSLRDSTWKELEGTPFPYMLYPDEHRLGSLFSGAIHWLAFHNDLGRDVIVAFDLMERRLLEMSFPDGFGLESEYSHLWVFGEFLSLSAMDHENSIVEIWVMKEYKVHSSWTKTLNLSIDGIPYFSPICSTKSGDIIGTNGETELLKYNDKGQLLEHNSFWDGPCPIGSLVTMYTESLLSLPSDNVLP