Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96126.t1 | XP_013466878.1 | 84.2 | 355 | 31 | 6 | 1 | 330 | 46 | 400 | 3.00E-167 | 597.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96126.t1 | Q9LIR8 | 26.3 | 209 | 134 | 8 | 63 | 266 | 111 | 304 | 3.1e-11 | 70.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96126.t1 | A0A072VFZ3 | 84.2 | 355 | 31 | 6 | 1 | 330 | 46 | 400 | 2.2e-167 | 597.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96126.t1 | MTR_1g037540 | 84.507 | 355 | 30 | 6 | 1 | 330 | 46 | 400 | 0.0 | 587 |
MS.gene96126.t1 | MTR_1g022200 | 46.071 | 280 | 126 | 13 | 66 | 331 | 102 | 370 | 1.41e-57 | 191 |
MS.gene96126.t1 | MTR_4g080200 | 40.404 | 297 | 144 | 13 | 54 | 330 | 66 | 349 | 1.11e-50 | 172 |
MS.gene96126.t1 | MTR_1g023400 | 43.165 | 278 | 129 | 13 | 65 | 330 | 92 | 352 | 1.85e-50 | 171 |
MS.gene96126.t1 | MTR_1g009110 | 38.246 | 285 | 143 | 11 | 63 | 331 | 112 | 379 | 2.32e-46 | 161 |
MS.gene96126.t1 | MTR_1g023430 | 50.000 | 136 | 61 | 5 | 197 | 331 | 44 | 173 | 1.33e-29 | 112 |
MS.gene96126.t1 | MTR_1g008000 | 36.201 | 279 | 115 | 17 | 65 | 331 | 42 | 269 | 8.16e-29 | 112 |
MS.gene96126.t1 | MTR_1g022105 | 32.852 | 277 | 120 | 13 | 32 | 301 | 94 | 311 | 6.93e-27 | 108 |
MS.gene96126.t1 | MTR_1g024125 | 43.966 | 116 | 61 | 4 | 198 | 311 | 38 | 151 | 1.54e-20 | 87.0 |
MS.gene96126.t1 | MTR_2g034700 | 31.381 | 239 | 131 | 11 | 61 | 288 | 116 | 332 | 1.44e-16 | 80.1 |
MS.gene96126.t1 | MTR_0129s0070 | 29.600 | 250 | 138 | 13 | 69 | 293 | 123 | 359 | 2.42e-14 | 73.6 |
MS.gene96126.t1 | MTR_7g079640 | 27.165 | 254 | 149 | 11 | 69 | 308 | 122 | 353 | 6.50e-14 | 72.4 |
MS.gene96126.t1 | MTR_0129s0120 | 29.600 | 250 | 138 | 13 | 69 | 293 | 123 | 359 | 1.12e-13 | 71.6 |
MS.gene96126.t1 | MTR_4g102410 | 27.523 | 218 | 127 | 9 | 69 | 261 | 171 | 382 | 6.76e-13 | 69.3 |
MS.gene96126.t1 | MTR_7g069550 | 27.007 | 274 | 148 | 12 | 53 | 293 | 110 | 364 | 7.58e-13 | 69.3 |
MS.gene96126.t1 | MTR_8g063350 | 28.326 | 233 | 139 | 10 | 70 | 287 | 81 | 300 | 6.15e-12 | 66.2 |
MS.gene96126.t1 | MTR_3g013740 | 24.812 | 266 | 150 | 13 | 66 | 305 | 149 | 390 | 7.05e-12 | 66.2 |
MS.gene96126.t1 | MTR_5g059430 | 24.549 | 277 | 177 | 10 | 66 | 321 | 151 | 416 | 1.17e-11 | 65.9 |
MS.gene96126.t1 | MTR_7g016930 | 30.542 | 203 | 109 | 10 | 53 | 236 | 90 | 279 | 2.75e-11 | 63.9 |
MS.gene96126.t1 | MTR_3g011120 | 29.032 | 248 | 134 | 15 | 69 | 297 | 122 | 346 | 2.91e-11 | 64.3 |
MS.gene96126.t1 | MTR_0831s0010 | 28.177 | 181 | 99 | 7 | 53 | 214 | 132 | 300 | 3.92e-11 | 63.9 |
MS.gene96126.t1 | MTR_8g063370 | 25.620 | 242 | 146 | 11 | 64 | 287 | 121 | 346 | 5.98e-11 | 63.5 |
MS.gene96126.t1 | MTR_5g072060 | 27.376 | 263 | 146 | 13 | 53 | 293 | 97 | 336 | 9.33e-11 | 63.2 |
MS.gene96126.t1 | MTR_6g027890 | 23.792 | 269 | 165 | 12 | 69 | 311 | 58 | 312 | 9.92e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 78 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTCCATCCATTTAATTTA+TGG | 0.124102 | 1.4:+21886136 | None:intergenic |
AAATACAACATTCTTGTTAA+TGG | 0.179334 | 1.4:-21886369 | MS.gene96126:CDS |
GTATGATCGGAATGAGAATT+TGG | 0.191400 | 1.4:-21886164 | MS.gene96126:CDS |
GGCATTTATCATTGGATTAC+AGG | 0.202107 | 1.4:-21886348 | MS.gene96126:CDS |
CCGGAGGAAGAGTAGGTTTA+TGG | 0.226429 | 1.4:+21886430 | None:intergenic |
TGAAACAAAATTGTATAATT+TGG | 0.231697 | 1.4:+21886116 | None:intergenic |
ATAACCCAAGCTTAATTCTT+TGG | 0.231708 | 1.4:-21886656 | MS.gene96126:CDS |
TGGGTCATCCATAAATTAAA+TGG | 0.273652 | 1.4:-21886144 | MS.gene96126:CDS |
AGAGCTTGTCATTGTGGTTA+TGG | 0.279029 | 1.4:+21886808 | None:intergenic |
CTAGAATACTTGATTGGTTT+CGG | 0.305996 | 1.4:-21886576 | MS.gene96126:CDS |
GTTGTATTTGTTAGGTCGTT+TGG | 0.313615 | 1.4:+21886383 | None:intergenic |
ACACGTTTGGCTTCGGAGTT+TGG | 0.314559 | 1.4:-21886246 | MS.gene96126:CDS |
GAGCTTGTCATTGTGGTTAT+GGG | 0.333567 | 1.4:+21886809 | None:intergenic |
TGGTATACTTGACGCTTTCT+TGG | 0.344842 | 1.4:-21885956 | MS.gene96126:CDS |
ACAAGAATGTTGTATTTGTT+AGG | 0.356694 | 1.4:+21886375 | None:intergenic |
GAAGCATTAGGTGAGTTTCT+AGG | 0.362538 | 1.4:+21886760 | None:intergenic |
TCCTATCACACGTTTGGCTT+CGG | 0.382337 | 1.4:-21886253 | MS.gene96126:CDS |
ATTAATCTAGAATACTTGAT+TGG | 0.389689 | 1.4:-21886582 | MS.gene96126:CDS |
TACAATTTGTTTATTCGTAT+GGG | 0.392879 | 1.4:+21886717 | None:intergenic |
TTGTTAATGGCATTTATCAT+TGG | 0.396640 | 1.4:-21886356 | MS.gene96126:CDS |
CAAGTATTCTAGATTAATAT+AGG | 0.416865 | 1.4:+21886587 | None:intergenic |
TTAATATAGGAGGCTGGATG+TGG | 0.427563 | 1.4:+21886600 | None:intergenic |
CACGGGTCCTATCACACGTT+TGG | 0.429407 | 1.4:-21886259 | MS.gene96126:CDS |
CAGTTTCAAATTGTTCTACA+TGG | 0.444058 | 1.4:-21885976 | MS.gene96126:CDS |
TATCGCATGGTGGCTTGATC+CGG | 0.450483 | 1.4:+21886411 | None:intergenic |
GTACAATTTGTTTATTCGTA+TGG | 0.452348 | 1.4:+21886716 | None:intergenic |
TTTGGAAAGAGAGAAGCATT+AGG | 0.452858 | 1.4:+21886748 | None:intergenic |
TCCGAAGCCAAACGTGTGAT+AGG | 0.463322 | 1.4:+21886252 | None:intergenic |
TATGATCGGAATGAGAATTT+GGG | 0.463772 | 1.4:-21886163 | MS.gene96126:CDS |
GGTGGTCATCGTTAGACATA+TGG | 0.465141 | 1.4:+21886880 | None:intergenic |
GGTTCCAAAGAATTAAGCTT+GGG | 0.470207 | 1.4:+21886652 | None:intergenic |
GATAAACATGCTATTTGCAA+GGG | 0.475366 | 1.4:-21886078 | MS.gene96126:CDS |
TAATATAGGAGGCTGGATGT+GGG | 0.493058 | 1.4:+21886601 | None:intergenic |
GCTATTTGCAAGGGGAAGAA+TGG | 0.493846 | 1.4:-21886069 | MS.gene96126:CDS |
CCATAAACCTACTCTTCCTC+CGG | 0.508504 | 1.4:-21886430 | MS.gene96126:CDS |
GAAATCAAAGCAGAGAATGA+TGG | 0.509070 | 1.4:+21886305 | None:intergenic |
ATTGGTTAATGATCATGAAA+TGG | 0.512572 | 1.4:+21886856 | None:intergenic |
CAATTCATCGGAGGAAAGCC+AGG | 0.517630 | 1.4:-21886042 | MS.gene96126:CDS |
TATAATGTCAGCAGTTGTCC+TGG | 0.525454 | 1.4:+21886024 | None:intergenic |
AAATTGTACGGTCATTGTAA+TGG | 0.527504 | 1.4:-21886702 | MS.gene96126:CDS |
TCATCCATAAATTAAATGGA+TGG | 0.534246 | 1.4:-21886140 | MS.gene96126:CDS |
ATTACAGGCTACAGTGTGAA+AGG | 0.538662 | 1.4:-21886333 | MS.gene96126:CDS |
CAGTGTTACCATCGTATGAT+CGG | 0.539041 | 1.4:-21886177 | MS.gene96126:CDS |
AACAAGTTTCACACGCTCAC+GGG | 0.539414 | 1.4:-21886276 | MS.gene96126:CDS |
TGATAAACATGCTATTTGCA+AGG | 0.543912 | 1.4:-21886079 | MS.gene96126:CDS |
CGCATGGTGGCTTGATCCGG+AGG | 0.543956 | 1.4:+21886414 | None:intergenic |
TTTGACAACTTTGAAATCGT+TGG | 0.545174 | 1.4:+21886539 | None:intergenic |
GATGAAAGAGAAAAGACAAA+GGG | 0.546402 | 1.4:+21886495 | None:intergenic |
AAATGGACCTCTCGAGTGGT+AGG | 0.546431 | 1.4:+21886630 | None:intergenic |
ACAATTTGTTTATTCGTATG+GGG | 0.548232 | 1.4:+21886718 | None:intergenic |
ATACGAATAAACAAATTGTA+CGG | 0.552456 | 1.4:-21886714 | MS.gene96126:CDS |
GGGTTCCAAAGAATTAAGCT+TGG | 0.557185 | 1.4:+21886651 | None:intergenic |
TCTAGATTAATATAGGAGGC+TGG | 0.565590 | 1.4:+21886594 | None:intergenic |
AATATAGGAGGCTGGATGTG+GGG | 0.566500 | 1.4:+21886602 | None:intergenic |
AAGAATGGTGTTCAATTCAT+CGG | 0.571747 | 1.4:-21886054 | MS.gene96126:CDS |
CTGACATTATACGACCATCA+TGG | 0.581550 | 1.4:-21886012 | MS.gene96126:CDS |
AACACTGCACAACATAAGCA+AGG | 0.585434 | 1.4:+21886193 | None:intergenic |
ATATAGGAGGCTGGATGTGG+GGG | 0.587028 | 1.4:+21886603 | None:intergenic |
CAACAAGTTTCACACGCTCA+CGG | 0.588066 | 1.4:-21886277 | MS.gene96126:CDS |
GCTTGATCCGGAGGAAGAGT+AGG | 0.590862 | 1.4:+21886423 | None:intergenic |
TGTCAAAGAGCTTGTCATTG+TGG | 0.591817 | 1.4:+21886802 | None:intergenic |
AATAATTAACTATGCTGACA+AGG | 0.596059 | 1.4:+21885906 | None:intergenic |
AATGGACCTCTCGAGTGGTA+GGG | 0.606084 | 1.4:+21886631 | None:intergenic |
GTATTCTAGATTAATATAGG+AGG | 0.614925 | 1.4:+21886590 | None:intergenic |
TACAAAATGGACCTCTCGAG+TGG | 0.615724 | 1.4:+21886626 | None:intergenic |
GTTGAAGTGAGTTGCCATGA+TGG | 0.618328 | 1.4:+21885998 | None:intergenic |
ATAAACATGCTATTTGCAAG+GGG | 0.627103 | 1.4:-21886077 | MS.gene96126:CDS |
GGTTAATGATCATGAAATGG+TGG | 0.634362 | 1.4:+21886859 | None:intergenic |
TCGTTTGGAATAATATCGCA+TGG | 0.637289 | 1.4:+21886398 | None:intergenic |
TGATGAAAGAGAAAAGACAA+AGG | 0.644899 | 1.4:+21886494 | None:intergenic |
TTCTCATTCCGATCATACGA+TGG | 0.647097 | 1.4:+21886169 | None:intergenic |
ATAATTAACTATGCTGACAA+GGG | 0.649830 | 1.4:+21885907 | None:intergenic |
TTGGAACCCTACCACTCGAG+AGG | 0.652180 | 1.4:-21886637 | MS.gene96126:CDS |
TAATGATCATGAAATGGTGG+TGG | 0.660160 | 1.4:+21886862 | None:intergenic |
AATGGTGTTCAATTCATCGG+AGG | 0.660690 | 1.4:-21886051 | MS.gene96126:CDS |
ACACTGCACAACATAAGCAA+GGG | 0.671428 | 1.4:+21886194 | None:intergenic |
GAAAATGTGACTGAGATCAA+CGG | 0.673292 | 1.4:-21886219 | MS.gene96126:CDS |
TTTGGAATAATATCGCATGG+TGG | 0.739511 | 1.4:+21886401 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAACAAAATTGTATAATT+TGG | + | chr1.4:21886690-21886709 | None:intergenic | 15.0% |
!! | AAATACAACATTCTTGTTAA+TGG | - | chr1.4:21886434-21886453 | MS.gene96126:CDS | 20.0% |
!! | ATACGAATAAACAAATTGTA+CGG | - | chr1.4:21886089-21886108 | MS.gene96126:CDS | 20.0% |
!! | CAAGTATTCTAGATTAATAT+AGG | + | chr1.4:21886219-21886238 | None:intergenic | 20.0% |
!!! | ATTAATCTAGAATACTTGAT+TGG | - | chr1.4:21886221-21886240 | MS.gene96126:CDS | 20.0% |
!!! | TACAATTTGTTTATTCGTAT+GGG | + | chr1.4:21886089-21886108 | None:intergenic | 20.0% |
!!! | TTGTAATGGTATTTTATGTT+TGG | - | chr1.4:21886115-21886134 | MS.gene96126:CDS | 20.0% |
! | ACAAGAATGTTGTATTTGTT+AGG | + | chr1.4:21886431-21886450 | None:intergenic | 25.0% |
! | ATTGGTTAATGATCATGAAA+TGG | + | chr1.4:21885950-21885969 | None:intergenic | 25.0% |
! | GTATTCTAGATTAATATAGG+AGG | + | chr1.4:21886216-21886235 | None:intergenic | 25.0% |
! | TCATCCATAAATTAAATGGA+TGG | - | chr1.4:21886663-21886682 | MS.gene96126:CDS | 25.0% |
! | TTGTTAATGGCATTTATCAT+TGG | - | chr1.4:21886447-21886466 | MS.gene96126:CDS | 25.0% |
!! | ACAATTTGTTTATTCGTATG+GGG | + | chr1.4:21886088-21886107 | None:intergenic | 25.0% |
!! | GTACAATTTGTTTATTCGTA+TGG | + | chr1.4:21886090-21886109 | None:intergenic | 25.0% |
!!! | CAATTTTGTTTCACTTGATT+CGG | - | chr1.4:21886697-21886716 | MS.gene96126:CDS | 25.0% |
AAATTGTACGGTCATTGTAA+TGG | - | chr1.4:21886101-21886120 | MS.gene96126:CDS | 30.0% | |
AAGAATGGTGTTCAATTCAT+CGG | - | chr1.4:21886749-21886768 | MS.gene96126:CDS | 30.0% | |
ACAATCTTAGCGAAAAATCA+TGG | - | chr1.4:21886342-21886361 | MS.gene96126:CDS | 30.0% | |
ATAACCCAAGCTTAATTCTT+TGG | - | chr1.4:21886147-21886166 | MS.gene96126:CDS | 30.0% | |
CAGTTTCAAATTGTTCTACA+TGG | - | chr1.4:21886827-21886846 | MS.gene96126:CDS | 30.0% | |
GATGAAAGAGAAAAGACAAA+GGG | + | chr1.4:21886311-21886330 | None:intergenic | 30.0% | |
TATGATCGGAATGAGAATTT+GGG | - | chr1.4:21886640-21886659 | MS.gene96126:CDS | 30.0% | |
TGATGAAAGAGAAAAGACAA+AGG | + | chr1.4:21886312-21886331 | None:intergenic | 30.0% | |
TGGGTCATCCATAAATTAAA+TGG | - | chr1.4:21886659-21886678 | MS.gene96126:CDS | 30.0% | |
! | AAAAGACAAAGGGTTTTTCA+CGG | + | chr1.4:21886301-21886320 | None:intergenic | 30.0% |
! | ATAAACATGCTATTTGCAAG+GGG | - | chr1.4:21886726-21886745 | MS.gene96126:CDS | 30.0% |
! | GATAAACATGCTATTTGCAA+GGG | - | chr1.4:21886725-21886744 | MS.gene96126:CDS | 30.0% |
! | GGCATGTTTCTTTTGTATAT+TGG | + | chr1.4:21885968-21885987 | None:intergenic | 30.0% |
! | TGATAAACATGCTATTTGCA+AGG | - | chr1.4:21886724-21886743 | MS.gene96126:CDS | 30.0% |
! | TGGTCCATCCATTTAATTTA+TGG | + | chr1.4:21886670-21886689 | None:intergenic | 30.0% |
!! | CTAGAATACTTGATTGGTTT+CGG | - | chr1.4:21886227-21886246 | MS.gene96126:CDS | 30.0% |
!! | TTTGACAACTTTGAAATCGT+TGG | + | chr1.4:21886267-21886286 | None:intergenic | 30.0% |
GAAAATGTGACTGAGATCAA+CGG | - | chr1.4:21886584-21886603 | MS.gene96126:CDS | 35.0% | |
GAAATCAAAGCAGAGAATGA+TGG | + | chr1.4:21886501-21886520 | None:intergenic | 35.0% | |
GGCATTTATCATTGGATTAC+AGG | - | chr1.4:21886455-21886474 | MS.gene96126:CDS | 35.0% | |
GGTTAATGATCATGAAATGG+TGG | + | chr1.4:21885947-21885966 | None:intergenic | 35.0% | |
GGTTCCAAAGAATTAAGCTT+GGG | + | chr1.4:21886154-21886173 | None:intergenic | 35.0% | |
GTATGATCGGAATGAGAATT+TGG | - | chr1.4:21886639-21886658 | MS.gene96126:CDS | 35.0% | |
TAATGATCATGAAATGGTGG+TGG | + | chr1.4:21885944-21885963 | None:intergenic | 35.0% | |
TCTAGATTAATATAGGAGGC+TGG | + | chr1.4:21886212-21886231 | None:intergenic | 35.0% | |
! | CATTGTGGTTATGGGTTTTA+GGG | + | chr1.4:21885989-21886008 | None:intergenic | 35.0% |
! | GTTGTATTTGTTAGGTCGTT+TGG | + | chr1.4:21886423-21886442 | None:intergenic | 35.0% |
! | TCATTGTGGTTATGGGTTTT+AGG | + | chr1.4:21885990-21886009 | None:intergenic | 35.0% |
! | TCGTTTGGAATAATATCGCA+TGG | + | chr1.4:21886408-21886427 | None:intergenic | 35.0% |
! | TGTCTTTTCTCTTTCATCAC+TGG | - | chr1.4:21886313-21886332 | MS.gene96126:CDS | 35.0% |
! | TTTGGAATAATATCGCATGG+TGG | + | chr1.4:21886405-21886424 | None:intergenic | 35.0% |
!! | TTTGGAAAGAGAGAAGCATT+AGG | + | chr1.4:21886058-21886077 | None:intergenic | 35.0% |
!!! | TTCGTATGGGGATGTTTTTT+TGG | + | chr1.4:21886076-21886095 | None:intergenic | 35.0% |
AACACTGCACAACATAAGCA+AGG | + | chr1.4:21886613-21886632 | None:intergenic | 40.0% | |
AATGGTGTTCAATTCATCGG+AGG | - | chr1.4:21886752-21886771 | MS.gene96126:CDS | 40.0% | |
ACACTGCACAACATAAGCAA+GGG | + | chr1.4:21886612-21886631 | None:intergenic | 40.0% | |
AGAGCTTGTCATTGTGGTTA+TGG | + | chr1.4:21885998-21886017 | None:intergenic | 40.0% | |
ATTACAGGCTACAGTGTGAA+AGG | - | chr1.4:21886470-21886489 | MS.gene96126:CDS | 40.0% | |
CAGTGTTACCATCGTATGAT+CGG | - | chr1.4:21886626-21886645 | MS.gene96126:CDS | 40.0% | |
CTGACATTATACGACCATCA+TGG | - | chr1.4:21886791-21886810 | MS.gene96126:CDS | 40.0% | |
GAGCTTGTCATTGTGGTTAT+GGG | + | chr1.4:21885997-21886016 | None:intergenic | 40.0% | |
GGGTTCCAAAGAATTAAGCT+TGG | + | chr1.4:21886155-21886174 | None:intergenic | 40.0% | |
TAATATAGGAGGCTGGATGT+GGG | + | chr1.4:21886205-21886224 | None:intergenic | 40.0% | |
TATAATGTCAGCAGTTGTCC+TGG | + | chr1.4:21886782-21886801 | None:intergenic | 40.0% | |
TGGTATACTTGACGCTTTCT+TGG | - | chr1.4:21886847-21886866 | MS.gene96126:CDS | 40.0% | |
TGTCAAAGAGCTTGTCATTG+TGG | + | chr1.4:21886004-21886023 | None:intergenic | 40.0% | |
TTAATATAGGAGGCTGGATG+TGG | + | chr1.4:21886206-21886225 | None:intergenic | 40.0% | |
TTCTCATTCCGATCATACGA+TGG | + | chr1.4:21886637-21886656 | None:intergenic | 40.0% | |
! | GAAGCATTAGGTGAGTTTCT+AGG | + | chr1.4:21886046-21886065 | None:intergenic | 40.0% |
AACAAGTTTCACACGCTCAC+GGG | - | chr1.4:21886527-21886546 | MS.gene96126:CDS | 45.0% | |
AATATAGGAGGCTGGATGTG+GGG | + | chr1.4:21886204-21886223 | None:intergenic | 45.0% | |
CAACAAGTTTCACACGCTCA+CGG | - | chr1.4:21886526-21886545 | MS.gene96126:CDS | 45.0% | |
CCATAAACCTACTCTTCCTC+CGG | - | chr1.4:21886373-21886392 | MS.gene96126:CDS | 45.0% | |
GCTATTTGCAAGGGGAAGAA+TGG | - | chr1.4:21886734-21886753 | MS.gene96126:CDS | 45.0% | |
GGTGGTCATCGTTAGACATA+TGG | + | chr1.4:21885926-21885945 | None:intergenic | 45.0% | |
GTTGAAGTGAGTTGCCATGA+TGG | + | chr1.4:21886808-21886827 | None:intergenic | 45.0% | |
TACAAAATGGACCTCTCGAG+TGG | + | chr1.4:21886180-21886199 | None:intergenic | 45.0% | |
! | TCCTATCACACGTTTGGCTT+CGG | - | chr1.4:21886550-21886569 | MS.gene96126:CDS | 45.0% |
AAATGGACCTCTCGAGTGGT+AGG | + | chr1.4:21886176-21886195 | None:intergenic | 50.0% | |
AATGGACCTCTCGAGTGGTA+GGG | + | chr1.4:21886175-21886194 | None:intergenic | 50.0% | |
ATATAGGAGGCTGGATGTGG+GGG | + | chr1.4:21886203-21886222 | None:intergenic | 50.0% | |
CAATTCATCGGAGGAAAGCC+AGG | - | chr1.4:21886761-21886780 | MS.gene96126:CDS | 50.0% | |
CCGGAGGAAGAGTAGGTTTA+TGG | + | chr1.4:21886376-21886395 | None:intergenic | 50.0% | |
TATCGCATGGTGGCTTGATC+CGG | + | chr1.4:21886395-21886414 | None:intergenic | 50.0% | |
TCCGAAGCCAAACGTGTGAT+AGG | + | chr1.4:21886554-21886573 | None:intergenic | 50.0% | |
! | ACACGTTTGGCTTCGGAGTT+TGG | - | chr1.4:21886557-21886576 | MS.gene96126:CDS | 50.0% |
! | CTGGATGTGGGGGTACAAAA+TGG | + | chr1.4:21886193-21886212 | None:intergenic | 50.0% |
CACGGGTCCTATCACACGTT+TGG | - | chr1.4:21886544-21886563 | MS.gene96126:CDS | 55.0% | |
GCTTGATCCGGAGGAAGAGT+AGG | + | chr1.4:21886383-21886402 | None:intergenic | 55.0% | |
TTGGAACCCTACCACTCGAG+AGG | - | chr1.4:21886166-21886185 | MS.gene96126:CDS | 55.0% | |
CGCATGGTGGCTTGATCCGG+AGG | + | chr1.4:21886392-21886411 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 21885915 | 21886910 | 21885915 | ID=MS.gene96126 |
chr1.4 | mRNA | 21885915 | 21886910 | 21885915 | ID=MS.gene96126.t1;Parent=MS.gene96126 |
chr1.4 | exon | 21885915 | 21886910 | 21885915 | ID=MS.gene96126.t1.exon1;Parent=MS.gene96126.t1 |
chr1.4 | CDS | 21885915 | 21886910 | 21885915 | ID=cds.MS.gene96126.t1;Parent=MS.gene96126.t1 |
Gene Sequence |
Protein sequence |