AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57536


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57536.t1 MTR_8g433040 62.933 375 72 8 1 327 9 364 1.90e-145 414
MS.gene57536.t1 MTR_8g032380 62.933 375 72 8 1 327 9 364 1.90e-145 414
MS.gene57536.t1 MTR_8g032390 64.756 349 87 11 1 322 31 370 2.08e-135 389
MS.gene57536.t1 MTR_8g433030 59.159 333 99 10 1 322 31 337 6.57e-107 316
MS.gene57536.t1 MTR_3g103020 49.602 377 121 11 6 327 16 378 1.16e-105 314
MS.gene57536.t1 MTR_4g122850 54.303 337 129 12 5 327 39 364 5.40e-100 300
MS.gene57536.t1 MTR_4g117720 51.852 351 129 14 1 327 44 378 5.25e-99 297
MS.gene57536.t1 MTR_4g094365 49.062 373 129 10 5 327 3 364 6.56e-98 293
MS.gene57536.t1 MTR_4g109270 47.439 371 128 12 10 327 8 364 8.34e-96 288
MS.gene57536.t1 MTR_3g034180 46.114 386 125 14 8 327 121 489 2.51e-92 283
MS.gene57536.t1 MTR_4g023090 45.663 392 132 15 3 327 9 386 1.30e-90 276
MS.gene57536.t1 MTR_6g060650 51.316 304 124 9 34 326 82 372 2.09e-90 275
MS.gene57536.t1 MTR_4g023080 45.924 368 131 11 7 326 6 353 8.76e-90 273
MS.gene57536.t1 MTR_4g021785 45.257 369 143 11 3 327 2 355 9.03e-90 273
MS.gene57536.t1 MTR_4g023070 45.431 383 127 12 10 326 3 369 1.70e-88 270
MS.gene57536.t1 MTR_3g034160 46.736 383 125 12 8 326 7 374 3.36e-88 269
MS.gene57536.t1 MTR_4g116330 47.200 375 126 13 9 327 22 380 3.43e-88 269
MS.gene57536.t1 MTR_4g023130 50.153 327 136 11 7 326 6 312 4.68e-88 266
MS.gene57536.t1 MTR_4g109280 45.989 374 134 11 5 327 3 359 1.87e-86 264
MS.gene57536.t1 MTR_4g117780 45.652 368 139 11 10 327 11 367 8.76e-86 263
MS.gene57536.t1 MTR_4g117850 45.652 368 135 12 9 324 22 376 1.29e-85 263
MS.gene57536.t1 MTR_4g023120 44.271 384 132 12 10 327 3 370 2.77e-85 261
MS.gene57536.t1 MTR_4g118380 46.537 361 112 11 9 300 7 355 2.33e-82 254
MS.gene57536.t1 MTR_4g117770 44.715 369 143 11 9 327 10 367 2.30e-79 246
MS.gene57536.t1 MTR_4g117810 44.715 369 143 11 9 327 10 367 2.30e-79 246
MS.gene57536.t1 MTR_3g034130 45.070 355 117 11 8 299 7 346 4.60e-79 246
MS.gene57536.t1 MTR_4g023380 43.622 392 121 13 9 327 15 379 2.55e-76 239
MS.gene57536.t1 MTR_5g097210 43.947 380 134 14 3 324 2 360 2.96e-76 238
MS.gene57536.t1 MTR_1g055135 42.377 387 146 14 2 327 5 375 4.23e-75 236
MS.gene57536.t1 MTR_4g023190 44.562 377 137 14 1 325 1 357 5.73e-73 229
MS.gene57536.t1 MTR_5g070130 43.041 388 146 14 1 327 4 377 2.24e-72 229
MS.gene57536.t1 MTR_4g023200 48.601 286 118 11 50 325 92 358 4.83e-72 227
MS.gene57536.t1 MTR_4g023150 44.149 376 141 14 1 325 1 358 5.12e-71 224
MS.gene57536.t1 MTR_1g055195 46.815 314 122 16 33 327 191 478 1.34e-68 222
MS.gene57536.t1 MTR_4g121580 41.954 348 117 11 3 297 4 319 3.93e-68 218
MS.gene57536.t1 MTR_4g117870 43.312 314 116 10 26 327 4 267 5.79e-68 214
MS.gene57536.t1 MTR_4g023440 40.957 376 117 11 3 327 11 332 6.05e-66 211
MS.gene57536.t1 MTR_4g118400 42.202 327 138 11 8 321 6 294 1.47e-65 208
MS.gene57536.t1 MTR_5g070080 39.599 399 156 14 1 327 1 386 2.28e-65 211
MS.gene57536.t1 MTR_4g116330 40.533 375 112 13 9 327 22 341 9.33e-63 202
MS.gene57536.t1 MTR_5g070088 38.404 401 155 15 4 327 1 386 1.91e-62 203
MS.gene57536.t1 MTR_7g079400 43.771 297 135 10 48 327 56 337 1.12e-61 200
MS.gene57536.t1 MTR_8g013010 44.891 274 90 8 5 230 49 309 4.65e-59 192
MS.gene57536.t1 MTR_7g079370 43.369 279 132 9 62 321 79 350 1.12e-57 190
MS.gene57536.t1 MTR_6g463430 54.872 195 78 6 136 327 15 202 2.35e-57 184
MS.gene57536.t1 MTR_1g055165 36.340 377 131 12 1 327 1 318 3.22e-56 185
MS.gene57536.t1 MTR_8g040935 50.754 199 86 4 137 327 14 208 6.43e-55 178
MS.gene57536.t1 MTR_4g117750 40.000 380 145 14 8 326 1 358 1.12e-54 186
MS.gene57536.t1 MTR_4g117750 55.856 111 41 3 221 325 373 481 6.46e-29 116
MS.gene57536.t1 MTR_4g117530 38.415 328 105 9 5 327 18 253 1.39e-54 179
MS.gene57536.t1 MTR_4g116320 50.228 219 90 6 117 323 43 254 2.97e-54 178
MS.gene57536.t1 MTR_4g118370 43.629 259 98 9 80 324 33 257 4.05e-50 167
MS.gene57536.t1 MTR_8g102520 36.932 352 167 14 1 327 1 322 6.94e-50 169
MS.gene57536.t1 MTR_4g116340 46.930 228 78 8 3 196 29 247 3.77e-49 165
MS.gene57536.t1 MTR_1g055175 47.826 207 82 6 135 327 7 201 5.58e-47 157
MS.gene57536.t1 MTR_7g117720 47.423 194 67 6 1 163 1 190 3.76e-43 150
MS.gene57536.t1 MTR_7g117720 51.724 87 30 4 246 321 186 271 3.83e-12 66.2
MS.gene57536.t1 MTR_1g055250 44.860 214 98 7 112 314 49 253 4.21e-41 146
MS.gene57536.t1 MTR_4g117430 50.000 164 67 7 68 230 3 152 6.41e-41 140
MS.gene57536.t1 MTR_7g079420 37.132 272 128 9 67 327 905 1144 9.48e-39 146
MS.gene57536.t1 MTR_2g048580 31.099 373 180 14 1 327 1 342 9.25e-37 135
MS.gene57536.t1 MTR_4g114700 37.079 267 95 10 68 318 9 218 1.45e-36 132
MS.gene57536.t1 MTR_4g122860 32.335 334 129 12 9 327 69 320 2.35e-31 120
MS.gene57536.t1 MTR_4g118360 51.163 129 51 4 206 326 1 125 8.52e-30 110
MS.gene57536.t1 MTR_8g098830 38.776 196 100 8 134 321 32 215 7.44e-29 111
MS.gene57536.t1 MTR_5g023000 61.290 93 30 2 241 327 7 99 8.57e-27 102
MS.gene57536.t1 MTR_7g079450 44.056 143 69 4 190 327 1 137 2.93e-25 99.0
MS.gene57536.t1 MTR_4g133170 26.409 337 186 14 7 292 1 326 5.76e-23 98.6
MS.gene57536.t1 MTR_2g055970 27.393 303 159 11 8 263 209 497 5.83e-23 99.8
MS.gene57536.t1 MTR_1g068835 25.594 379 206 13 7 326 1 362 6.71e-23 98.2
MS.gene57536.t1 MTR_1g068875 25.203 369 203 15 7 318 1 353 1.71e-22 97.1
MS.gene57536.t1 MTR_2g426020 26.098 387 203 16 10 323 6 382 1.72e-22 97.4
MS.gene57536.t1 MTR_6g034720 46.341 123 54 5 91 207 53 169 2.47e-22 93.6
MS.gene57536.t1 MTR_4g108820 30.714 280 154 12 2 263 32 289 2.67e-22 95.5
MS.gene57536.t1 MTR_2g031720 27.078 373 204 13 10 323 6 369 3.35e-22 96.3
MS.gene57536.t1 MTR_1g097560 26.741 359 193 13 10 319 36 373 1.61e-21 94.4
MS.gene57536.t1 MTR_1g068860 25.000 360 203 13 7 317 1 342 2.29e-21 94.0
MS.gene57536.t1 MTR_1g094210 25.203 369 190 13 10 319 57 398 4.78e-21 93.2
MS.gene57536.t1 MTR_1g094210 25.217 345 173 12 10 296 57 374 1.13e-20 92.4
MS.gene57536.t1 MTR_2g031680 25.833 360 206 11 10 318 6 355 1.47e-20 91.7
MS.gene57536.t1 MTR_8g467140 26.688 311 166 12 1 264 24 319 3.30e-20 90.1
MS.gene57536.t1 MTR_2g028130 25.455 330 168 13 10 271 5 324 1.82e-19 88.6
MS.gene57536.t1 MTR_2g028160 25.189 397 201 18 10 321 5 390 2.36e-19 88.6
MS.gene57536.t1 MTR_0667s0010 25.215 349 189 12 10 295 6 345 2.69e-19 88.2
MS.gene57536.t1 MTR_2g026010 27.106 273 148 12 53 295 78 329 3.71e-19 87.8
MS.gene57536.t1 MTR_5g057790 27.374 358 165 14 10 300 46 375 1.28e-18 86.3
MS.gene57536.t1 MTR_2g028140 23.590 390 207 13 10 318 5 384 4.87e-18 84.7
MS.gene57536.t1 MTR_2g426060 25.707 389 202 17 10 323 6 382 5.35e-18 84.3
MS.gene57536.t1 MTR_3g007330 26.230 366 193 14 10 319 48 392 5.90e-18 84.3
MS.gene57536.t1 MTR_1g097490 25.613 367 191 13 10 319 49 390 7.36e-18 84.0
MS.gene57536.t1 MTR_3g036430 25.706 354 188 16 10 319 20 342 9.91e-18 83.2
MS.gene57536.t1 MTR_2g021050 24.219 384 181 15 10 319 5 352 1.37e-17 83.2
MS.gene57536.t1 MTR_2g031640 25.664 339 182 15 10 295 6 327 1.58e-17 82.8
MS.gene57536.t1 MTR_2g021150 25.858 379 204 17 2 319 6 368 1.74e-17 82.8
MS.gene57536.t1 MTR_4g107820 27.157 313 153 14 10 270 36 325 4.53e-17 81.6
MS.gene57536.t1 MTR_4g107820 27.157 313 153 14 10 270 36 325 4.60e-17 81.6
MS.gene57536.t1 MTR_4g107780 27.157 313 153 14 10 270 36 325 4.60e-17 81.6
MS.gene57536.t1 MTR_2g425980 26.786 392 201 18 10 326 5 385 5.12e-17 81.6
MS.gene57536.t1 MTR_4g107780 27.157 313 153 14 10 270 36 325 6.06e-17 81.3
MS.gene57536.t1 MTR_3g013740 28.615 325 136 14 10 263 44 343 6.24e-17 81.3
MS.gene57536.t1 MTR_2g025420 23.750 400 202 16 10 319 6 392 6.49e-17 81.3
MS.gene57536.t1 MTR_5g057710 27.301 326 139 14 10 272 46 336 1.82e-16 79.7
MS.gene57536.t1 MTR_1g050542 24.793 363 204 13 10 319 58 404 3.56e-16 79.0
MS.gene57536.t1 MTR_2g021770 28.846 312 167 15 52 322 108 405 4.21e-16 79.0
MS.gene57536.t1 MTR_6g027910 25.389 386 186 17 13 319 12 374 1.38e-15 77.0
MS.gene57536.t1 MTR_1g054725 24.668 377 198 16 9 319 19 375 1.44e-15 77.0
MS.gene57536.t1 MTR_1g097330 25.956 366 186 16 10 313 16 358 1.72e-15 77.0
MS.gene57536.t1 MTR_2g024100 27.027 296 163 12 60 312 91 376 2.75e-15 76.6
MS.gene57536.t1 MTR_2g046900 24.762 315 166 10 4 263 22 320 3.02e-15 76.3
MS.gene57536.t1 MTR_5g069390 25.617 324 185 14 35 322 112 415 3.66e-15 76.3
MS.gene57536.t1 MTR_4g028510 27.796 313 186 12 41 322 97 400 3.66e-15 76.3
MS.gene57536.t1 MTR_4g055060 27.559 381 181 14 10 319 30 386 4.87e-15 75.5
MS.gene57536.t1 MTR_2g104340 26.684 386 207 18 9 322 13 394 5.97e-15 75.5
MS.gene57536.t1 MTR_2g426090 23.410 346 184 12 13 292 9 339 7.22e-15 75.1
MS.gene57536.t1 MTR_4g070550 24.633 341 202 15 27 323 55 384 1.31e-14 74.3
MS.gene57536.t1 MTR_5g069120 34.483 145 68 4 19 145 42 177 1.33e-14 71.2
MS.gene57536.t1 MTR_8g054320 28.793 323 163 16 10 319 32 300 2.05e-14 73.2
MS.gene57536.t1 MTR_3g007430 25.344 363 193 12 13 319 46 386 2.46e-14 73.6
MS.gene57536.t1 MTR_3g006670 27.619 315 149 12 10 267 49 341 2.98e-14 73.6
MS.gene57536.t1 MTR_1g055065 26.335 281 168 9 65 319 20 287 3.72e-14 72.0
MS.gene57536.t1 MTR_2g426070 24.217 351 188 15 11 295 7 345 3.75e-14 73.2
MS.gene57536.t1 MTR_2g046920 24.759 311 163 11 4 263 18 308 4.35e-14 72.8
MS.gene57536.t1 MTR_4g102410 24.495 396 210 15 9 322 60 448 4.36e-14 73.2
MS.gene57536.t1 MTR_2g078870 27.322 183 110 5 81 263 78 237 6.03e-14 71.6
MS.gene57536.t1 MTR_5g057020 25.938 320 162 13 10 285 46 334 8.66e-14 71.6
MS.gene57536.t1 MTR_3g013770 25.867 375 193 13 10 319 33 387 9.23e-14 72.0
MS.gene57536.t1 MTR_4g117550 25.570 395 174 18 9 322 16 371 9.82e-14 71.6
MS.gene57536.t1 MTR_3g009310 26.480 321 164 11 6 274 38 338 1.04e-13 71.6
MS.gene57536.t1 MTR_8g099460 24.147 381 197 14 10 318 5 365 1.05e-13 71.6
MS.gene57536.t1 MTR_4g006270 23.824 319 186 12 7 289 1 298 1.05e-13 71.6
MS.gene57536.t1 MTR_0128s0020 26.238 404 192 22 2 318 8 392 2.01e-13 70.9
MS.gene57536.t1 MTR_7g062100 24.552 391 206 16 5 319 19 396 2.01e-13 70.9
MS.gene57536.t1 MTR_4g030830 25.366 410 181 21 10 319 9 393 2.58e-13 70.5
MS.gene57536.t1 MTR_7g007300 24.211 380 185 16 8 319 101 445 3.40e-13 70.5
MS.gene57536.t1 MTR_5g097350 25.166 302 178 12 42 320 107 383 3.68e-13 70.1
MS.gene57536.t1 MTR_2g038680 24.755 408 198 17 10 322 16 409 4.46e-13 69.7
MS.gene57536.t1 MTR_7g070440 27.532 316 157 16 4 260 1 303 6.30e-13 69.3
MS.gene57536.t1 MTR_1g056710 26.000 300 162 13 10 263 34 319 7.29e-13 68.9
MS.gene57536.t1 MTR_0128s0070 25.700 393 189 20 10 318 22 395 8.10e-13 68.9
MS.gene57536.t1 MTR_6g007150 26.991 226 136 9 56 268 62 271 8.40e-13 68.6
MS.gene57536.t1 MTR_6g086825 27.211 294 168 12 65 322 175 458 8.83e-13 68.9
MS.gene57536.t1 MTR_7g016930 28.105 306 150 16 9 259 15 305 1.07e-12 68.2
MS.gene57536.t1 MTR_4g122840 38.060 134 47 5 197 327 164 264 1.13e-12 67.4
MS.gene57536.t1 MTR_3g024130 27.509 269 141 10 63 308 58 295 1.14e-12 68.2
MS.gene57536.t1 MTR_2g021800 23.856 306 188 10 52 320 115 412 1.42e-12 68.6
MS.gene57536.t1 MTR_3g011060 29.242 277 144 16 63 318 140 385 1.57e-12 68.2
MS.gene57536.t1 MTR_2g046830 25.974 308 163 13 4 263 19 309 1.92e-12 67.8
MS.gene57536.t1 MTR_0054s0100 23.762 404 205 16 9 322 16 406 2.04e-12 67.8
MS.gene57536.t1 MTR_4g061340 25.532 376 188 17 10 319 26 375 2.15e-12 67.8
MS.gene57536.t1 MTR_3g009300 28.058 278 152 13 13 265 37 291 2.26e-12 67.4
MS.gene57536.t1 MTR_7g017040 26.389 360 173 15 9 289 15 361 2.29e-12 67.8
MS.gene57536.t1 MTR_3g464500 27.147 361 169 17 4 286 21 365 2.37e-12 67.8
MS.gene57536.t1 MTR_4g013180 24.934 381 201 14 5 308 6 378 3.76e-12 67.4
MS.gene57536.t1 MTR_0129s0070 25.092 271 156 10 81 320 138 392 4.10e-12 67.0
MS.gene57536.t1 MTR_0054s0090 24.845 322 187 13 41 322 98 404 4.11e-12 67.0
MS.gene57536.t1 MTR_5g037680 26.073 303 192 15 35 319 93 381 4.43e-12 67.0
MS.gene57536.t1 MTR_2g021155 28.049 246 141 10 65 292 130 357 4.64e-12 67.4
MS.gene57536.t1 MTR_3g014570 26.954 371 189 15 10 319 29 378 5.00e-12 66.6
MS.gene57536.t1 MTR_4g023430 39.623 106 53 3 231 327 119 222 5.80e-12 64.7
MS.gene57536.t1 MTR_2g078900 23.641 368 179 13 10 321 33 354 6.05e-12 66.2
MS.gene57536.t1 MTR_7g056503 26.977 215 139 6 62 262 116 326 6.64e-12 66.2
MS.gene57536.t1 MTR_1g055200 47.761 67 26 2 64 129 5 63 6.72e-12 61.6
MS.gene57536.t1 MTR_2g043410 26.103 272 150 11 62 300 133 386 8.40e-12 65.9
MS.gene57536.t1 MTR_6g021880 27.562 283 153 13 66 319 122 381 8.51e-12 65.9
MS.gene57536.t1 MTR_3g023930 23.514 370 195 15 6 319 30 367 9.90e-12 65.5
MS.gene57536.t1 MTR_7g066030 26.625 323 166 10 6 262 17 334 1.08e-11 65.5
MS.gene57536.t1 MTR_2g022000 23.344 317 188 13 52 327 114 416 1.43e-11 65.5
MS.gene57536.t1 MTR_6g007135 24.165 389 191 15 10 319 26 389 2.12e-11 64.7
MS.gene57536.t1 MTR_7g055830 26.486 370 192 18 10 322 13 359 2.45e-11 64.3
MS.gene57536.t1 MTR_7g055930 25.373 335 189 16 41 319 95 424 2.75e-11 64.3
MS.gene57536.t1 MTR_1004s0010 28.017 232 132 9 37 263 92 293 2.78e-11 64.3
MS.gene57536.t1 MTR_2g104280 25.000 292 168 10 69 322 125 403 3.14e-11 64.3
MS.gene57536.t1 MTR_7g445890 26.531 294 161 15 10 258 16 299 3.95e-11 63.9
MS.gene57536.t1 MTR_4g031770 24.437 311 160 10 7 263 1 290 4.27e-11 63.5
MS.gene57536.t1 MTR_3g083660 26.996 263 111 11 10 265 25 213 4.40e-11 63.2
MS.gene57536.t1 MTR_0044s0300 26.961 204 122 9 66 263 138 320 5.57e-11 63.5
MS.gene57536.t1 MTR_5g056990 30.114 176 83 8 110 272 33 181 6.17e-11 62.0
MS.gene57536.t1 MTR_0760s0010 26.000 300 143 11 15 263 52 323 7.00e-11 63.2
MS.gene57536.t1 MTR_7g077970 26.061 330 166 14 7 262 1 326 7.84e-11 63.2
MS.gene57536.t1 MTR_2g021950 25.651 269 174 9 71 320 132 393 8.65e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57536.t1 AT3G06240 27.547 265 178 6 61 319 163 419 2.39e-20 91.7
MS.gene57536.t1 AT3G23880 24.595 370 203 14 10 323 14 363 8.88e-17 80.5
MS.gene57536.t1 AT3G16210 25.424 295 164 12 9 269 4 276 3.50e-11 63.9
MS.gene57536.t1 AT4G22390 24.834 302 168 13 65 327 93 374 4.60e-11 63.9
MS.gene57536.t1 AT4G22390 24.834 302 168 13 65 327 93 374 5.17e-11 63.5

Find 71 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGTCTTTGATTTAA+TGG 0.084690 8.3:-62182515 MS.gene57536:CDS
AATTATAAAATTAAAATTAA+AGG 0.141253 8.3:-62182919 MS.gene57536:CDS
GGAATAGGAACTTTCATAAT+TGG 0.168463 8.3:-62182399 MS.gene57536:CDS
GATTATGGTTTGTGGGTATT+TGG 0.208731 8.3:-62182439 MS.gene57536:CDS
GGAAATCGACAGTTGAAATA+TGG 0.217300 8.3:-62182378 MS.gene57536:CDS
AAAGCAGGATTATTCTTTAA+TGG 0.228597 8.3:-62182589 MS.gene57536:CDS
CCACGTCATCTATATGGTTT+TGG 0.285724 8.3:-62182769 MS.gene57536:CDS
AAGCAGGATTATTCTTTAAT+GGG 0.287791 8.3:-62182588 MS.gene57536:CDS
TTGGAGAATTTCTCAGTCTA+TGG 0.288501 8.3:-62182420 MS.gene57536:CDS
TAATCCTGCTTTGGAAGCTT+TGG 0.296435 8.3:+62182600 None:intergenic
GACCATGATCCTGTGGATTA+TGG 0.306412 8.3:-62182454 MS.gene57536:CDS
GACCATCCACGTCATCTATA+TGG 0.352255 8.3:-62182775 MS.gene57536:CDS
AATCCTGCTTTGGAAGCTTT+GGG 0.358664 8.3:+62182601 None:intergenic
TCTTTAATGGGGATATTCAT+TGG 0.368049 8.3:-62182576 MS.gene57536:CDS
ATTAAAGAATAATCCTGCTT+TGG 0.391144 8.3:+62182591 None:intergenic
ATCTGAAGTGGCCATTTATA+CGG 0.397013 8.3:-62182170 MS.gene57536:CDS
AAGCAGAGACTCCGTATAAA+TGG 0.405306 8.3:+62182159 None:intergenic
CCAAGTAATCATCTCTTAAT+CGG 0.422613 8.3:+62182740 None:intergenic
GTTCTACAAACCTCTACATA+TGG 0.427198 8.3:-62182867 MS.gene57536:CDS
TAAAACAGAATCATGGTTGA+TGG 0.429027 8.3:+62182978 None:intergenic
TTTATAATTAAAATATCGTC+GGG 0.432859 8.3:+62182933 None:intergenic
AATTTCTCAGTCTATGGAAT+AGG 0.433887 8.3:-62182414 MS.gene57536:CDS
GGATCATGGTCAAAATCATC+TGG 0.436812 8.3:+62182466 None:intergenic
CATCTTGTTAAACTTGTTCA+CGG 0.438416 8.3:+62182122 None:intergenic
TCCTGTGGATTATGGTTTGT+GGG 0.455259 8.3:-62182446 MS.gene57536:CDS
ATCCTGTGGATTATGGTTTG+TGG 0.458998 8.3:-62182447 MS.gene57536:CDS
TCTTTGTGAAATCTAGAAGA+TGG 0.459093 8.3:+62182841 None:intergenic
CAGAAGGAAGATATAACATC+TGG 0.465891 8.3:+62183199 None:intergenic
GAAATCGACAGTTGAAATAT+GGG 0.469274 8.3:-62182377 MS.gene57536:CDS
TATCCCAAAGCTTCCAAAGC+AGG 0.472312 8.3:-62182604 MS.gene57536:CDS
GGGGAAAAGAACATAATACT+AGG 0.479109 8.3:+62182304 None:intergenic
CCGATTAAGAGATGATTACT+TGG 0.479528 8.3:-62182740 MS.gene57536:CDS
GCATGTACTTTGGCAGCAAA+AGG 0.483005 8.3:+62182805 None:intergenic
TCAAATCCTGCTGAGGTTGT+CGG 0.486377 8.3:-62183166 MS.gene57536:CDS
TAATGGGGATATTCATTGGT+TGG 0.487283 8.3:-62182572 MS.gene57536:CDS
TAAACTTGTTCACGGTCACC+AGG 0.501824 8.3:+62182130 None:intergenic
AATACAAACAACATTCGTCT+TGG 0.505881 8.3:-62182345 MS.gene57536:CDS
GAGTCTCTGCTTTCACTCCC+TGG 0.511723 8.3:-62182148 MS.gene57536:CDS
AGTTGAAATATGGGTGATGA+AGG 0.512041 8.3:-62182368 MS.gene57536:CDS
GTCGGGGAAGTAGAAAAGTA+TGG 0.515821 8.3:+62182950 None:intergenic
TTGTCTTTGATTTAATGGAA+AGG 0.526787 8.3:-62182510 MS.gene57536:CDS
ACTTTACCGACAACCTCAGC+AGG 0.529985 8.3:+62183160 None:intergenic
AAATTAAAGGTTCATGCAGA+GGG 0.531783 8.3:-62182906 MS.gene57536:CDS
AACCATAATCCACAGGATCA+TGG 0.536939 8.3:+62182452 None:intergenic
ATTAAGAGATGATTACTTGG+TGG 0.538629 8.3:-62182737 MS.gene57536:CDS
TCTCATTTAGAGATAATACA+TGG 0.548869 8.3:-62182672 MS.gene57536:CDS
AATACATGGAATGAAATTGA+AGG 0.550594 8.3:-62182658 MS.gene57536:CDS
AAAATTAAAGGTTCATGCAG+AGG 0.552075 8.3:-62182907 MS.gene57536:CDS
ATATAATGAAGTGCATCCTA+AGG 0.555527 8.3:+62182705 None:intergenic
CATCACTTATTTGAATACAA+CGG 0.561563 8.3:-62182629 MS.gene57536:CDS
AGCAGGATTATTCTTTAATG+GGG 0.562885 8.3:-62182587 MS.gene57536:CDS
TGGTCAAAATCATCTGGAAG+AGG 0.566442 8.3:+62182472 None:intergenic
GGGAAAAGAACATAATACTA+GGG 0.571263 8.3:+62182305 None:intergenic
GTCATCGTATGCATGTACTT+TGG 0.576356 8.3:+62182795 None:intergenic
GGTCCAGTAAAACAGAATCA+TGG 0.579553 8.3:+62182971 None:intergenic
AACTGACGGTGATCGTGGAT+TGG 0.582084 8.3:-62182248 MS.gene57536:CDS
CCAAAACCATATAGATGACG+TGG 0.584587 8.3:+62182769 None:intergenic
ACCCACAAACCATAATCCAC+AGG 0.594022 8.3:+62182445 None:intergenic
ATTTGAATGATTAATTCAGA+AGG 0.600517 8.3:+62183183 None:intergenic
TAATCATTCAAATCCTGCTG+AGG 0.610148 8.3:-62183173 MS.gene57536:CDS
ACTAGGGATTACAAGAGACT+TGG 0.610650 8.3:+62182321 None:intergenic
GAATCTGAATGCATCTGAAG+TGG 0.614691 8.3:-62182182 MS.gene57536:CDS
AAGATGGATTCCATATGTAG+AGG 0.617580 8.3:+62182857 None:intergenic
AACCATATAGATGACGTGGA+TGG 0.644793 8.3:+62182773 None:intergenic
GTTGGAACTGACGGTGATCG+TGG 0.645956 8.3:-62182253 MS.gene57536:CDS
TTGGCAGCAAAAGGAGACAA+AGG 0.647941 8.3:+62182814 None:intergenic
GGTGATATTGTTGGAACTGA+CGG 0.665403 8.3:-62182262 MS.gene57536:CDS
AAACTTGTTCACGGTCACCA+GGG 0.678032 8.3:+62182131 None:intergenic
TTATTATCATGATATACGAG+TGG 0.685713 8.3:-62182542 MS.gene57536:CDS
GTATTCAAATAAGTGATGTG+AGG 0.692775 8.3:+62182634 None:intergenic
TTATAATTAAAATATCGTCG+GGG 0.738865 8.3:+62182934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAATTAAAATTAA+AGG - chr8.3:62182423-62182442 MS.gene57536:CDS 0.0%
!!! TTTTATAATTAAAATATCGT+CGG + chr8.3:62182413-62182432 None:intergenic 10.0%
!! TTTATAATTAAAATATCGTC+GGG + chr8.3:62182412-62182431 None:intergenic 15.0%
!! ATTTGAATGATTAATTCAGA+AGG + chr8.3:62182162-62182181 None:intergenic 20.0%
!! TTATAATTAAAATATCGTCG+GGG + chr8.3:62182411-62182430 None:intergenic 20.0%
!!! TATTGTTGTCTTTGATTTAA+TGG - chr8.3:62182827-62182846 MS.gene57536:CDS 20.0%
! AAAGCAGGATTATTCTTTAA+TGG - chr8.3:62182753-62182772 MS.gene57536:CDS 25.0%
! AAGCAGGATTATTCTTTAAT+GGG - chr8.3:62182754-62182773 MS.gene57536:CDS 25.0%
! AATACATGGAATGAAATTGA+AGG - chr8.3:62182684-62182703 MS.gene57536:CDS 25.0%
! ATTAAAGAATAATCCTGCTT+TGG + chr8.3:62182754-62182773 None:intergenic 25.0%
! CATCACTTATTTGAATACAA+CGG - chr8.3:62182713-62182732 MS.gene57536:CDS 25.0%
! TCTCATTTAGAGATAATACA+TGG - chr8.3:62182670-62182689 MS.gene57536:CDS 25.0%
! TTATTATCATGATATACGAG+TGG - chr8.3:62182800-62182819 MS.gene57536:CDS 25.0%
!! ACTTTTTGTAGAGTATATAG+GGG + chr8.3:62183060-62183079 None:intergenic 25.0%
!! TTGTCTTTGATTTAATGGAA+AGG - chr8.3:62182832-62182851 MS.gene57536:CDS 25.0%
!!! CACTTTTTGTAGAGTATATA+GGG + chr8.3:62183061-62183080 None:intergenic 25.0%
AAAATTAAAGGTTCATGCAG+AGG - chr8.3:62182435-62182454 MS.gene57536:CDS 30.0%
AAATTAAAGGTTCATGCAGA+GGG - chr8.3:62182436-62182455 MS.gene57536:CDS 30.0%
AATACAAACAACATTCGTCT+TGG - chr8.3:62182997-62183016 MS.gene57536:intron 30.0%
AATTTCTCAGTCTATGGAAT+AGG - chr8.3:62182928-62182947 MS.gene57536:CDS 30.0%
ACAAAAAGTGGTGATATTGT+TGG - chr8.3:62183071-62183090 MS.gene57536:intron 30.0%
AGCAGGATTATTCTTTAATG+GGG - chr8.3:62182755-62182774 MS.gene57536:CDS 30.0%
ATATAATGAAGTGCATCCTA+AGG + chr8.3:62182640-62182659 None:intergenic 30.0%
ATTAAGAGATGATTACTTGG+TGG - chr8.3:62182605-62182624 MS.gene57536:CDS 30.0%
CCAAGTAATCATCTCTTAAT+CGG + chr8.3:62182605-62182624 None:intergenic 30.0%
CCTATATACTCTACAAAAAG+TGG - chr8.3:62183059-62183078 MS.gene57536:intron 30.0%
GAAATCGACAGTTGAAATAT+GGG - chr8.3:62182965-62182984 MS.gene57536:CDS 30.0%
GGAATAGGAACTTTCATAAT+TGG - chr8.3:62182943-62182962 MS.gene57536:CDS 30.0%
GGGAAAAGAACATAATACTA+GGG + chr8.3:62183040-62183059 None:intergenic 30.0%
GTATTCAAATAAGTGATGTG+AGG + chr8.3:62182711-62182730 None:intergenic 30.0%
TAAAACAGAATCATGGTTGA+TGG + chr8.3:62182367-62182386 None:intergenic 30.0%
TCTTTAATGGGGATATTCAT+TGG - chr8.3:62182766-62182785 MS.gene57536:CDS 30.0%
TCTTTGTGAAATCTAGAAGA+TGG + chr8.3:62182504-62182523 None:intergenic 30.0%
TGATATGGATACAATTCTTG+CGG + chr8.3:62182295-62182314 None:intergenic 30.0%
!!! CCACTTTTTGTAGAGTATAT+AGG + chr8.3:62183062-62183081 None:intergenic 30.0%
ACATGCAAATTTGCAAAGTG+AGG + chr8.3:62182261-62182280 None:intergenic 35.0%
AGTTGAAATATGGGTGATGA+AGG - chr8.3:62182974-62182993 MS.gene57536:CDS 35.0%
CAGAAGGAAGATATAACATC+TGG + chr8.3:62182146-62182165 None:intergenic 35.0%
CCGATTAAGAGATGATTACT+TGG - chr8.3:62182602-62182621 MS.gene57536:CDS 35.0%
GATGGATGTCTCAAAATCTA+TGG + chr8.3:62182349-62182368 None:intergenic 35.0%
GGAAATCGACAGTTGAAATA+TGG - chr8.3:62182964-62182983 MS.gene57536:CDS 35.0%
GGGGAAAAGAACATAATACT+AGG + chr8.3:62183041-62183060 None:intergenic 35.0%
GTTCTACAAACCTCTACATA+TGG - chr8.3:62182475-62182494 MS.gene57536:CDS 35.0%
TAATCATTCAAATCCTGCTG+AGG - chr8.3:62182169-62182188 MS.gene57536:CDS 35.0%
TAATGGGGATATTCATTGGT+TGG - chr8.3:62182770-62182789 MS.gene57536:CDS 35.0%
TTGGAGAATTTCTCAGTCTA+TGG - chr8.3:62182922-62182941 MS.gene57536:CDS 35.0%
! AAGATGGATTCCATATGTAG+AGG + chr8.3:62182488-62182507 None:intergenic 35.0%
! ATCTGAAGTGGCCATTTATA+CGG - chr8.3:62183172-62183191 MS.gene57536:CDS 35.0%
! CAACCATGATTCTGTTTTAC+TGG - chr8.3:62182368-62182387 MS.gene57536:CDS 35.0%
! GATTATGGTTTGTGGGTATT+TGG - chr8.3:62182903-62182922 MS.gene57536:CDS 35.0%
!!! TTGGTGGTTTTATTGTCCTT+AGG - chr8.3:62182621-62182640 MS.gene57536:CDS 35.0%
AACCATAATCCACAGGATCA+TGG + chr8.3:62182893-62182912 None:intergenic 40.0%
AACCATATAGATGACGTGGA+TGG + chr8.3:62182572-62182591 None:intergenic 40.0%
AAGCAGAGACTCCGTATAAA+TGG + chr8.3:62183186-62183205 None:intergenic 40.0%
ACTAGGGATTACAAGAGACT+TGG + chr8.3:62183024-62183043 None:intergenic 40.0%
CCAAAACCATATAGATGACG+TGG + chr8.3:62182576-62182595 None:intergenic 40.0%
GAATCTGAATGCATCTGAAG+TGG - chr8.3:62183160-62183179 MS.gene57536:CDS 40.0%
GGATCATGGTCAAAATCATC+TGG + chr8.3:62182879-62182898 None:intergenic 40.0%
GGTCCAGTAAAACAGAATCA+TGG + chr8.3:62182374-62182393 None:intergenic 40.0%
GGTGATATTGTTGGAACTGA+CGG - chr8.3:62183080-62183099 MS.gene57536:intron 40.0%
GTCATCGTATGCATGTACTT+TGG + chr8.3:62182550-62182569 None:intergenic 40.0%
TATGGATACAATTCTTGCGG+CGG + chr8.3:62182292-62182311 None:intergenic 40.0%
TGGTCAAAATCATCTGGAAG+AGG + chr8.3:62182873-62182892 None:intergenic 40.0%
! AGGTCGAGTTGTTGTTGATA+TGG + chr8.3:62182310-62182329 None:intergenic 40.0%
! ATCCTGTGGATTATGGTTTG+TGG - chr8.3:62182895-62182914 MS.gene57536:CDS 40.0%
! CCACGTCATCTATATGGTTT+TGG - chr8.3:62182573-62182592 MS.gene57536:CDS 40.0%
! TCCTGTGGATTATGGTTTGT+GGG - chr8.3:62182896-62182915 MS.gene57536:CDS 40.0%
!! AATCCTGCTTTGGAAGCTTT+GGG + chr8.3:62182744-62182763 None:intergenic 40.0%
!! TAATCCTGCTTTGGAAGCTT+TGG + chr8.3:62182745-62182764 None:intergenic 40.0%
!! TGATTTTGACCATGATCCTG+TGG - chr8.3:62182881-62182900 MS.gene57536:CDS 40.0%
ACCCACAAACCATAATCCAC+AGG + chr8.3:62182900-62182919 None:intergenic 45.0%
ATGGAGCGAATTTCAGCAAG+AGG + chr8.3:62182330-62182349 None:intergenic 45.0%
GACCATCCACGTCATCTATA+TGG - chr8.3:62182567-62182586 MS.gene57536:CDS 45.0%
GCATGTACTTTGGCAGCAAA+AGG + chr8.3:62182540-62182559 None:intergenic 45.0%
GTCGGGGAAGTAGAAAAGTA+TGG + chr8.3:62182395-62182414 None:intergenic 45.0%
TATCCCAAAGCTTCCAAAGC+AGG - chr8.3:62182738-62182757 MS.gene57536:CDS 45.0%
TCAAATCCTGCTGAGGTTGT+CGG - chr8.3:62182176-62182195 MS.gene57536:CDS 45.0%
TTGGCAGCAAAAGGAGACAA+AGG + chr8.3:62182531-62182550 None:intergenic 45.0%
! AAACTTGTTCACGGTCACCA+GGG + chr8.3:62183214-62183233 None:intergenic 45.0%
! GACCATGATCCTGTGGATTA+TGG - chr8.3:62182888-62182907 MS.gene57536:CDS 45.0%
! TAAACTTGTTCACGGTCACC+AGG + chr8.3:62183215-62183234 None:intergenic 45.0%
AACTGACGGTGATCGTGGAT+TGG - chr8.3:62183094-62183113 MS.gene57536:intron 50.0%
ACTTTACCGACAACCTCAGC+AGG + chr8.3:62182185-62182204 None:intergenic 50.0%
GAGTCTCTGCTTTCACTCCC+TGG - chr8.3:62183194-62183213 MS.gene57536:CDS 55.0%
GTTGGAACTGACGGTGATCG+TGG - chr8.3:62183089-62183108 MS.gene57536:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 62182129 62183235 62182129 ID=MS.gene57536
chr8.3 mRNA 62182129 62183235 62182129 ID=MS.gene57536.t1;Parent=MS.gene57536
chr8.3 exon 62183136 62183235 62183136 ID=MS.gene57536.t1.exon1;Parent=MS.gene57536.t1
chr8.3 CDS 62183136 62183235 62183136 ID=cds.MS.gene57536.t1;Parent=MS.gene57536.t1
chr8.3 exon 62182129 62183012 62182129 ID=MS.gene57536.t1.exon2;Parent=MS.gene57536.t1
chr8.3 CDS 62182129 62183012 62182129 ID=cds.MS.gene57536.t1;Parent=MS.gene57536.t1
Gene Sequence

>MS.gene57536

ATGACGAAGATGAACCAGATGTTATATCTTCCTTCTGAATTAATCATTCAAATCCTGCTGAGGTTGTCGGTAAAGTCTCTGTTACGTTTCAAATGCGTTTGTAAGTCATTGTTTTCTCTTATCTCTGATCCTCACTTTGCAAATTTGCATGTTGATGTTTCCGCCGCAAGAATTGTATCCATATCAACAACAACTCGACCTCTTGCTGAAATTCGCTCCATAGATTTTGAGACATCCATCAACCATGATTCTGTTTTACTGGACCATACTTTTCTACTTCCCCGACGATATTTTAATTATAAAATTAAAATTAAAGGTTCATGCAGAGGGTTTATATTTTTGCACTGTTCTACAAACCTCTACATATGGAATCCATCTTCTAGATTTCACAAAGAAATACCTTTGTCTCCTTTTGCTGCCAAAGTACATGCATACGATGACCATCCACGTCATCTATATGGTTTTGGTTATGACCGATTAAGAGATGATTACTTGGTGGTTTTATTGTCCTTAGGATGCACTTCATTATATTTAGAGTTTTTCTCATTTAGAGATAATACATGGAATGAAATTGAAGGTCCTCACATCACTTATTTGAATACAACGGATTATCCCAAAGCTTCCAAAGCAGGATTATTCTTTAATGGGGATATTCATTGGTTGGCATCTCGTTATTATCATGATATACGAGTGGAAGTTATTGTTGTCTTTGATTTAATGGAAAGGAAACTGTTAGAGATACCTCTTCCAGATGATTTTGACCATGATCCTGTGGATTATGGTTTGTGGGTATTTGGAGAATTTCTCAGTCTATGGAATAGGAACTTTCATAATTGGAAATCGACAGTTGAAATATGGGTGATGAAGGAATACAAACAACATTCGTCTTGGACCAAGTCTCTTGTAATCCCTAGTATTATGTTCTTTTCCCCTATATACTCTACAAAAAGTGGTGATATTGTTGGAACTGACGGTGATCGTGGATTGGTGAAGTATAATAATAAACGACAGTCGAAAGAGTATCTCGAAATGAATCTGAATGCATCTGAAGTGGCCATTTATACGGAGTCTCTGCTTTCACTCCCTGGTGACCGTGAACAAGTTTAA

Protein sequence

>MS.gene57536.t1

MTKMNQMLYLPSELIIQILLRLSVKSLLRFKCVYFETSINHDSVLLDHTFLLPRRYFNYKIKIKGSCRGFIFLHCSTNLYIWNPSSRFHKEIPLSPFAAKVHAYDDHPRHLYGFGYDRLRDDYLVVLLSLGCTSLYLEFFSFRDNTWNEIEGPHITYLNTTDYPKASKAGLFFNGDIHWLASRYYHDIRVEVIVVFDLMERKLLEIPLPDDFDHDPVDYGLWVFGEFLSLWNRNFHNWKSTVEIWVMKEYKQHSSWTKSLVIPSIMFFSPIYSTKSGDIVGTDGDRGLVKYNNKRQSKEYLEMNLNASEVAIYTESLLSLPGDREQV