AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26957

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26957.t1 MTR_1g022200 87.352 253 31 1 30 281 118 370 7.74e-164 460
MS.gene26957.t1 MTR_1g023400 61.154 260 87 6 24 280 104 352 2.77e-97 290
MS.gene26957.t1 MTR_4g080200 48.047 256 114 10 33 280 105 349 1.19e-63 204
MS.gene26957.t1 MTR_1g023430 65.101 149 45 3 136 281 29 173 4.93e-56 179
MS.gene26957.t1 MTR_1g037540 45.627 263 120 9 34 280 145 400 9.83e-56 184
MS.gene26957.t1 MTR_1g009110 46.124 258 121 10 32 281 132 379 2.55e-55 183
MS.gene26957.t1 MTR_1g024125 67.521 117 33 3 152 264 38 153 3.30e-48 157
MS.gene26957.t1 MTR_1g022105 43.293 164 80 5 102 262 168 321 5.24e-35 128
MS.gene26957.t1 MTR_1g008000 35.429 175 95 7 117 281 103 269 4.66e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATAGCAACTTGAAAATT+TGG 0.088974 1.3:-2855860 MS.gene26957:CDS
TTGATTATACTATGAATTTC+TGG 0.160554 1.3:-2855662 MS.gene26957:CDS
ATATCGGAGATGGTGAATTT+AGG 0.203222 1.3:-2857524 MS.gene26957:CDS
AGACTTAGAGACGGAGATTT+TGG 0.233414 1.3:-2857498 MS.gene26957:CDS
AATCAACATCAATTTGAAAT+TGG 0.255349 1.3:+2855679 None:intergenic
GGATCATACTTGTATGGTTT+TGG 0.267164 1.3:-2856275 MS.gene26957:CDS
CATTGGATTACAAACAATTC+AGG 0.290334 1.3:-2856044 MS.gene26957:CDS
TATCGGAGATGGTGAATTTA+GGG 0.310635 1.3:-2857523 MS.gene26957:CDS
CGACGTGTGATGATAGTAAA+AGG 0.340023 1.3:+2856107 None:intergenic
CGATCTTTAGCTGATAAGTT+TGG 0.349644 1.3:+2855945 None:intergenic
AACAAGAGTGTTATATTTGA+TGG 0.351323 1.3:+2856079 None:intergenic
CTATAGCAACTTGAAAATTT+GGG 0.354263 1.3:-2855859 MS.gene26957:CDS
CAACTTGAAAATTTGGGTAA+TGG 0.386894 1.3:-2855853 MS.gene26957:CDS
TTGTTAACGGCGTTTATCAT+TGG 0.397348 1.3:-2856061 MS.gene26957:CDS
GGAGGAGGAGGATGTCGAGT+AGG 0.405345 1.3:+2856128 None:intergenic
AAATATAACACTCTTGTTAA+CGG 0.409193 1.3:-2856074 MS.gene26957:CDS
GGCAAAGTGAGTTGCCTTGA+TGG 0.414472 1.3:+2855700 None:intergenic
AATACCGGATCATACTTGTA+TGG 0.426686 1.3:-2856281 MS.gene26957:CDS
ATTGAGAATAGAAGACATAT+CGG 0.437808 1.3:-2857540 MS.gene26957:CDS
TGGGTAATGGATCATCAAAA+TGG 0.462504 1.3:-2855840 MS.gene26957:CDS
AAACGCATCAATGACTTTAG+TGG 0.464081 1.3:+2857467 None:intergenic
GAGGAGGAGGATGTCGAGTA+GGG 0.464665 1.3:+2856129 None:intergenic
CACACCTGCTGCCACAATAC+CGG 0.475494 1.3:-2856296 MS.gene26957:CDS
ATGATAGTAAAAGGAGGAGG+AGG 0.485797 1.3:+2856116 None:intergenic
TTGTCACATGATAATTGATA+CGG 0.486238 1.3:+2856210 None:intergenic
ACAAGAGTGTTATATTTGAT+GGG 0.491851 1.3:+2856080 None:intergenic
AACTTTGAAATCGATGATGT+TGG 0.496264 1.3:+2856241 None:intergenic
TCAGGCTACTATCGCTATGA+TGG 0.498019 1.3:-2856026 MS.gene26957:CDS
ATAGTCTAATCACTAAATCA+TGG 0.501050 1.3:-2856154 MS.gene26957:CDS
ATAAGTTTGGCCCTCTGAGT+TGG 0.507074 1.3:+2855958 None:intergenic
CAACTCCTTGGAGGAAAGGA+TGG 0.511243 1.3:-2855744 MS.gene26957:CDS
TAATGGATCATCAAAATGGA+TGG 0.514911 1.3:-2855836 MS.gene26957:CDS
ACTTTCCATCCTTTCCTCCA+AGG 0.517316 1.3:+2855739 None:intergenic
AAGAATGGTGATCAACTCCT+TGG 0.519337 1.3:-2855756 MS.gene26957:CDS
ATGTGCGGTCTTTGGAAGAA+TGG 0.527423 1.3:-2855771 MS.gene26957:CDS
GCTGACAAAGGAGCAATGCT+TGG 0.545337 1.3:+2855624 None:intergenic
TGATGATGTTGCTGAAATCA+AGG 0.546082 1.3:-2855910 MS.gene26957:CDS
TGATCAACTCCTTGGAGGAA+AGG 0.554949 1.3:-2855748 MS.gene26957:CDS
AATGGTGATCAACTCCTTGG+AGG 0.555859 1.3:-2855753 MS.gene26957:CDS
TGATCCGGTATTGTGGCAGC+AGG 0.557162 1.3:+2856292 None:intergenic
GTATTGTGGCAGCAGGTGTG+AGG 0.557271 1.3:+2856299 None:intergenic
ATCAATTTCACCAACTCAGA+GGG 0.558963 1.3:-2855968 MS.gene26957:CDS
TACGAAAATTGAACAAAGGT+GGG 0.569525 1.3:+2855793 None:intergenic
ACAAGTATGATCCGGTATTG+TGG 0.574986 1.3:+2856285 None:intergenic
AATAGAAGACATATCGGAGA+TGG 0.576865 1.3:-2857534 MS.gene26957:CDS
GTGATGATAGTAAAAGGAGG+AGG 0.579129 1.3:+2856113 None:intergenic
TCTAGTTGTCGAGTTCAAGA+TGG 0.586328 1.3:+2856337 None:intergenic
CGTTGCGAAAGTTAAAGCAT+AGG 0.589589 1.3:+2855991 None:intergenic
CTTGCATCATATGACCATCA+AGG 0.591771 1.3:-2855714 MS.gene26957:CDS
TTTAGGGTTAGACTTAGAGA+CGG 0.591774 1.3:-2857507 MS.gene26957:CDS
AATGGATCATCAAAATGGAT+GGG 0.593891 1.3:-2855835 MS.gene26957:CDS
AAAACCATACAAGTATGATC+CGG 0.598486 1.3:+2856277 None:intergenic
ATACGAAAATTGAACAAAGG+TGG 0.601250 1.3:+2855792 None:intergenic
TATTGTGGCAGCAGGTGTGA+GGG 0.615105 1.3:+2856300 None:intergenic
AGGAGGAGGATGTCGAGTAG+GGG 0.617489 1.3:+2856130 None:intergenic
CTTGATGGTCATATGATGCA+AGG 0.628700 1.3:+2855715 None:intergenic
CAAACTTTATGTTTCATCAG+CGG 0.640194 1.3:-2856183 MS.gene26957:CDS
CTTGAACTCGACAACTAGAG+AGG 0.647828 1.3:-2856333 MS.gene26957:CDS
TTAGCTAACTATGCTGACAA+AGG 0.648199 1.3:+2855612 None:intergenic
GATGATGTTGCTGAAATCAA+GGG 0.651975 1.3:-2855909 MS.gene26957:CDS
TTGATGGTCATATGATGCAA+GGG 0.658471 1.3:+2855716 None:intergenic
CACATACGAAAATTGAACAA+AGG 0.671737 1.3:+2855789 None:intergenic
AGCAGGTGTGAGGGATACGA+TGG 0.675142 1.3:+2856309 None:intergenic
GATCAATTTCACCAACTCAG+AGG 0.690768 1.3:-2855969 MS.gene26957:CDS
CGTGTGATGATAGTAAAAGG+AGG 0.698571 1.3:+2856110 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAACTGTTATTTAAATA+GGG - chr1.3:2856434-2856453 MS.gene26957:intron 10.0%
!!! ACAAATTAAAATTCTTTTTA+TGG + chr1.3:2856076-2856095 None:intergenic 10.0%
!!! GAAATAACTGTTATTTAAAT+AGG - chr1.3:2856433-2856452 MS.gene26957:intron 15.0%
!! AAAAAAAACATGCAAACTAA+TGG - chr1.3:2855953-2855972 MS.gene26957:CDS 20.0%
!! AAATATAACACTCTTGTTAA+CGG - chr1.3:2857094-2857113 MS.gene26957:intron 20.0%
!! ATAAAATCCTAAAAAAACTG+AGG + chr1.3:2856372-2856391 None:intergenic 20.0%
!! ATGGAGTATAATAGTATATT+AGG - chr1.3:2855972-2855991 MS.gene26957:CDS 20.0%
!! GTATAAATTTCCATTAAGTA+GGG + chr1.3:2856054-2856073 None:intergenic 20.0%
!! TAAAATCCTAAAAAAACTGA+GGG + chr1.3:2856371-2856390 None:intergenic 20.0%
!! TACTAACATATACAAACTAA+TGG - chr1.3:2855917-2855936 MS.gene26957:CDS 20.0%
!! TCAAAATATATTAACCATGT+GGG + chr1.3:2855777-2855796 None:intergenic 20.0%
!! TTGATTATACTATGAATTTC+TGG - chr1.3:2857506-2857525 MS.gene26957:CDS 20.0%
!!! AATCAACATCAATTTGAAAT+TGG + chr1.3:2857492-2857511 None:intergenic 20.0%
!!! AGGATTTTATAATCAGAATA+GGG - chr1.3:2856382-2856401 MS.gene26957:intron 20.0%
!!! TAGGATTTTATAATCAGAAT+AGG - chr1.3:2856381-2856400 MS.gene26957:intron 20.0%
! AAGGTTTATATATACTCTGT+GGG + chr1.3:2855885-2855904 None:intergenic 25.0%
! AATATATTGTCCCTACTTAA+TGG - chr1.3:2856041-2856060 MS.gene26957:CDS 25.0%
! ACATTCAAATATTTCATGAG+GGG + chr1.3:2855861-2855880 None:intergenic 25.0%
! ACTATAGCAACTTGAAAATT+TGG - chr1.3:2857308-2857327 MS.gene26957:intron 25.0%
! ATAATGAGAATTGTTGGAAA+AGG + chr1.3:2856729-2856748 None:intergenic 25.0%
! ATAGTCTAATCACTAAATCA+TGG - chr1.3:2857014-2857033 MS.gene26957:intron 25.0%
! ATTGAGAATAGAAGACATAT+CGG - chr1.3:2855628-2855647 MS.gene26957:CDS 25.0%
! CAAAATATATTAACCATGTG+GGG + chr1.3:2855776-2855795 None:intergenic 25.0%
! CTATAGCAACTTGAAAATTT+GGG - chr1.3:2857309-2857328 MS.gene26957:intron 25.0%
! CTCAAAATATATTAACCATG+TGG + chr1.3:2855778-2855797 None:intergenic 25.0%
! GACATTCAAATATTTCATGA+GGG + chr1.3:2855862-2855881 None:intergenic 25.0%
! GGTATAAATTTCCATTAAGT+AGG + chr1.3:2856055-2856074 None:intergenic 25.0%
! TAATGAGAATTGTTGGAAAA+GGG + chr1.3:2856728-2856747 None:intergenic 25.0%
! TTGTCACATGATAATTGATA+CGG + chr1.3:2856961-2856980 None:intergenic 25.0%
!! GATAAAATTTGAAATCCGTA+GGG + chr1.3:2856288-2856307 None:intergenic 25.0%
!! TGATAAAATTTGAAATCCGT+AGG + chr1.3:2856289-2856308 None:intergenic 25.0%
!!! AACAAGAGTGTTATATTTGA+TGG + chr1.3:2857092-2857111 None:intergenic 25.0%
!!! AAGGGTGTTTTAACATATTT+TGG + chr1.3:2856343-2856362 None:intergenic 25.0%
!!! ACAAGAGTGTTATATTTGAT+GGG + chr1.3:2857091-2857110 None:intergenic 25.0%
!!! GTGTTTTAACATATTTTGGA+GGG + chr1.3:2856339-2856358 None:intergenic 25.0%
AAAAAAACTGAGGGTTTCTA+AGG + chr1.3:2856362-2856381 None:intergenic 30.0%
AAAAAACTGAGGGTTTCTAA+GGG + chr1.3:2856361-2856380 None:intergenic 30.0%
AAAACCATACAAGTATGATC+CGG + chr1.3:2856894-2856913 None:intergenic 30.0%
AATGAGAATTGTTGGAAAAG+GGG + chr1.3:2856727-2856746 None:intergenic 30.0%
AATGGATCATCAAAATGGAT+GGG - chr1.3:2857333-2857352 MS.gene26957:intron 30.0%
AGGTTTATATATACTCTGTG+GGG + chr1.3:2855884-2855903 None:intergenic 30.0%
ATACGAAAATTGAACAAAGG+TGG + chr1.3:2857379-2857398 None:intergenic 30.0%
ATCTATGCATATAGAAATGG+GGG - chr1.3:2855743-2855762 MS.gene26957:CDS 30.0%
ATTCAGAAATTTCGCTTTGA+GGG + chr1.3:2856538-2856557 None:intergenic 30.0%
CAAACTTTATGTTTCATCAG+CGG - chr1.3:2856985-2857004 MS.gene26957:intron 30.0%
CAACTTGAAAATTTGGGTAA+TGG - chr1.3:2857315-2857334 MS.gene26957:intron 30.0%
CAAGGTTTATATATACTCTG+TGG + chr1.3:2855886-2855905 None:intergenic 30.0%
CACATACGAAAATTGAACAA+AGG + chr1.3:2857382-2857401 None:intergenic 30.0%
CATTGGATTACAAACAATTC+AGG - chr1.3:2857124-2857143 MS.gene26957:intron 30.0%
GATCTATGCATATAGAAATG+GGG - chr1.3:2855742-2855761 MS.gene26957:CDS 30.0%
GGACATTCAAATATTTCATG+AGG + chr1.3:2855863-2855882 None:intergenic 30.0%
GGATCTATGCATATAGAAAT+GGG - chr1.3:2855741-2855760 MS.gene26957:CDS 30.0%
TACGAAAATTGAACAAAGGT+GGG + chr1.3:2857378-2857397 None:intergenic 30.0%
TATGGGATAATGAGAATTGT+TGG + chr1.3:2856735-2856754 None:intergenic 30.0%
TCATTAACTATCATGAGACT+AGG + chr1.3:2856650-2856669 None:intergenic 30.0%
! TAATGGATCATCAAAATGGA+TGG - chr1.3:2857332-2857351 MS.gene26957:intron 30.0%
! TTATCATCTCAAAAGCGTAA+AGG - chr1.3:2856303-2856322 MS.gene26957:CDS 30.0%
! TTGTTCAATTTTCGTATGTG+CGG - chr1.3:2857382-2857401 MS.gene26957:intron 30.0%
!! AACTTTGAAATCGATGATGT+TGG + chr1.3:2856930-2856949 None:intergenic 30.0%
!! TTAACATATTTTGGAGGGTT+TGG + chr1.3:2856334-2856353 None:intergenic 30.0%
!!! GGTGTTTTAACATATTTTGG+AGG + chr1.3:2856340-2856359 None:intergenic 30.0%
!!! TAGAAACCCTCAGTTTTTTT+AGG - chr1.3:2856362-2856381 MS.gene26957:intron 30.0%
AAACGCATCAATGACTTTAG+TGG + chr1.3:2855704-2855723 None:intergenic 35.0%
AATACCGGATCATACTTGTA+TGG - chr1.3:2856887-2856906 MS.gene26957:intron 35.0%
AATAGAAGACATATCGGAGA+TGG - chr1.3:2855634-2855653 MS.gene26957:CDS 35.0%
ACAACTACCTTCGATTGTTA+TGG + chr1.3:2856753-2856772 None:intergenic 35.0%
ACAATCGAAGGTAGTTGTAA+CGG - chr1.3:2856755-2856774 MS.gene26957:intron 35.0%
ATATCGGAGATGGTGAATTT+AGG - chr1.3:2855644-2855663 MS.gene26957:CDS 35.0%
ATCAATTTCACCAACTCAGA+GGG - chr1.3:2857200-2857219 MS.gene26957:intron 35.0%
ATGAGAATTGTTGGAAAAGG+GGG + chr1.3:2856726-2856745 None:intergenic 35.0%
CAACTACCTTCGATTGTTAT+GGG + chr1.3:2856752-2856771 None:intergenic 35.0%
CATTATCCCATAACAATCGA+AGG - chr1.3:2856743-2856762 MS.gene26957:intron 35.0%
CGATCTTTAGCTGATAAGTT+TGG + chr1.3:2857226-2857245 None:intergenic 35.0%
CGGATCTATGCATATAGAAA+TGG - chr1.3:2855740-2855759 MS.gene26957:CDS 35.0%
GATGATGTTGCTGAAATCAA+GGG - chr1.3:2857259-2857278 MS.gene26957:intron 35.0%
GATTCAGAAATTTCGCTTTG+AGG + chr1.3:2856539-2856558 None:intergenic 35.0%
GTTAGTAGCATACTTTGTCA+AGG + chr1.3:2855904-2855923 None:intergenic 35.0%
TATAATCAGAATAGGGTACG+CGG - chr1.3:2856389-2856408 MS.gene26957:intron 35.0%
TATCGGAGATGGTGAATTTA+GGG - chr1.3:2855645-2855664 MS.gene26957:CDS 35.0%
TTGTTAACGGCGTTTATCAT+TGG - chr1.3:2857107-2857126 MS.gene26957:intron 35.0%
TTTGTCTCAAAGGTTTGTGT+TGG - chr1.3:2856783-2856802 MS.gene26957:intron 35.0%
! GGATCATACTTGTATGGTTT+TGG - chr1.3:2856893-2856912 MS.gene26957:intron 35.0%
! TGATGATGTTGCTGAAATCA+AGG - chr1.3:2857258-2857277 MS.gene26957:intron 35.0%
! TTCAGAAATTTCGCTTTGAG+GGG + chr1.3:2856537-2856556 None:intergenic 35.0%
! TTGATGGTCATATGATGCAA+GGG + chr1.3:2857455-2857474 None:intergenic 35.0%
! TTTAGGGTTAGACTTAGAGA+CGG - chr1.3:2855661-2855680 MS.gene26957:CDS 35.0%
!! TGGGTAATGGATCATCAAAA+TGG - chr1.3:2857328-2857347 MS.gene26957:intron 35.0%
!!! AACGGTGTTTTTTGTCTCAA+AGG - chr1.3:2856773-2856792 MS.gene26957:intron 35.0%
AAGAATGGTGATCAACTCCT+TGG - chr1.3:2857412-2857431 MS.gene26957:intron 40.0%
ACAAGTATGATCCGGTATTG+TGG + chr1.3:2856886-2856905 None:intergenic 40.0%
AGGGGGATTTGATGTGTATT+AGG + chr1.3:2856709-2856728 None:intergenic 40.0%
ATGATAGTAAAAGGAGGAGG+AGG + chr1.3:2857055-2857074 None:intergenic 40.0%
CGACGTGTGATGATAGTAAA+AGG + chr1.3:2857064-2857083 None:intergenic 40.0%
CGTGTGATGATAGTAAAAGG+AGG + chr1.3:2857061-2857080 None:intergenic 40.0%
CGTTGCGAAAGTTAAAGCAT+AGG + chr1.3:2857180-2857199 None:intergenic 40.0%
CTTGCATCATATGACCATCA+AGG - chr1.3:2857454-2857473 MS.gene26957:intron 40.0%
GAAATTTCTGAATCCGTCAC+TGG - chr1.3:2856545-2856564 MS.gene26957:intron 40.0%
GATCAATTTCACCAACTCAG+AGG - chr1.3:2857199-2857218 MS.gene26957:intron 40.0%
GTGATGATAGTAAAAGGAGG+AGG + chr1.3:2857058-2857077 None:intergenic 40.0%
TAGGTTGTCACATGAGAGAA+GGG + chr1.3:2856690-2856709 None:intergenic 40.0%
TCTAGTTGTCGAGTTCAAGA+TGG + chr1.3:2856834-2856853 None:intergenic 40.0%
! AGACTTAGAGACGGAGATTT+TGG - chr1.3:2855670-2855689 MS.gene26957:CDS 40.0%
! ATTTTCGTATGTGCGGTCTT+TGG - chr1.3:2857389-2857408 MS.gene26957:intron 40.0%
! CTTGATGGTCATATGATGCA+AGG + chr1.3:2857456-2857475 None:intergenic 40.0%
! TTAGGTTGTCACATGAGAGA+AGG + chr1.3:2856691-2856710 None:intergenic 40.0%
!! CATATTTTGGAGGGTTTGGA+AGG + chr1.3:2856330-2856349 None:intergenic 40.0%
!! TCAGAAATTTCGCTTTGAGG+GGG + chr1.3:2856536-2856555 None:intergenic 40.0%
AATGGTGATCAACTCCTTGG+AGG - chr1.3:2857415-2857434 MS.gene26957:intron 45.0%
ACTTTCCATCCTTTCCTCCA+AGG + chr1.3:2857432-2857451 None:intergenic 45.0%
ATAAGTTTGGCCCTCTGAGT+TGG + chr1.3:2857213-2857232 None:intergenic 45.0%
CTGGATGTGTTCAACGATCT+TGG - chr1.3:2856564-2856583 MS.gene26957:intron 45.0%
CTTGAACTCGACAACTAGAG+AGG - chr1.3:2856835-2856854 MS.gene26957:intron 45.0%
GATGCGTTTCAGATGTGTTC+AGG - chr1.3:2855715-2855734 MS.gene26957:CDS 45.0%
GTTTCAGATGTGTTCAGGCA+CGG - chr1.3:2855720-2855739 MS.gene26957:CDS 45.0%
TCAGGCTACTATCGCTATGA+TGG - chr1.3:2857142-2857161 MS.gene26957:intron 45.0%
TCGTTGAACACATCCAGTGA+CGG + chr1.3:2856561-2856580 None:intergenic 45.0%
TGATCAACTCCTTGGAGGAA+AGG - chr1.3:2857420-2857439 MS.gene26957:intron 45.0%
! ATGTGCGGTCTTTGGAAGAA+TGG - chr1.3:2857397-2857416 MS.gene26957:intron 45.0%
CAACTCCTTGGAGGAAAGGA+TGG - chr1.3:2857424-2857443 MS.gene26957:intron 50.0%
GCTGACAAAGGAGCAATGCT+TGG + chr1.3:2857547-2857566 None:intergenic 50.0%
GGCAAAGTGAGTTGCCTTGA+TGG + chr1.3:2857471-2857490 None:intergenic 50.0%
TATTGTGGCAGCAGGTGTGA+GGG + chr1.3:2856871-2856890 None:intergenic 50.0%
!! TAGAGACGGAGATTTTGGCG+TGG - chr1.3:2855675-2855694 MS.gene26957:CDS 50.0%
AGCAGGTGTGAGGGATACGA+TGG + chr1.3:2856862-2856881 None:intergenic 55.0%
AGGAGGAGGATGTCGAGTAG+GGG + chr1.3:2857041-2857060 None:intergenic 55.0%
CACACCTGCTGCCACAATAC+CGG - chr1.3:2856872-2856891 MS.gene26957:intron 55.0%
CATGTGCCGCCGTTTCAGAA+AGG + chr1.3:2856612-2856631 None:intergenic 55.0%
GAGGAGGAGGATGTCGAGTA+GGG + chr1.3:2857042-2857061 None:intergenic 55.0%
GTATTGTGGCAGCAGGTGTG+AGG + chr1.3:2856872-2856891 None:intergenic 55.0%
TGATCCGGTATTGTGGCAGC+AGG + chr1.3:2856879-2856898 None:intergenic 55.0%
! AGAGCCCCGCCTTTCTGAAA+CGG - chr1.3:2856600-2856619 MS.gene26957:intron 55.0%
AGGGTGCGCGAGAAGAGAGT+AGG + chr1.3:2856269-2856288 None:intergenic 60.0%
CTCTCTTCTCGCGCACCCTA+CGG - chr1.3:2856270-2856289 MS.gene26957:CDS 60.0%
GGAGGAGGAGGATGTCGAGT+AGG + chr1.3:2857043-2857062 None:intergenic 60.0%
GGGTGCGCGAGAAGAGAGTA+GGG + chr1.3:2856268-2856287 None:intergenic 60.0%
GTGCCGCCGTTTCAGAAAGG+CGG + chr1.3:2856609-2856628 None:intergenic 60.0%
TGCCGCCGTTTCAGAAAGGC+GGG + chr1.3:2856608-2856627 None:intergenic 60.0%
TGCGCGAGAAGAGAGTAGGG+TGG + chr1.3:2856265-2856284 None:intergenic 60.0%
GCCGCCGTTTCAGAAAGGCG+GGG + chr1.3:2856607-2856626 None:intergenic 65.0%
TGGGGGCAGTTGACCCCACA+TGG - chr1.3:2855760-2855779 MS.gene26957:CDS 65.0%
!! GCCCCGCCTTTCTGAAACGG+CGG - chr1.3:2856603-2856622 MS.gene26957:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 2855620 2857570 2855620 ID=MS.gene26957
chr1.3 mRNA 2855620 2857570 2855620 ID=MS.gene26957.t1;Parent=MS.gene26957
chr1.3 exon 2857482 2857570 2857482 ID=MS.gene26957.t1.exon1;Parent=MS.gene26957.t1
chr1.3 CDS 2857482 2857570 2857482 ID=cds.MS.gene26957.t1;Parent=MS.gene26957.t1
chr1.3 exon 2855620 2856376 2855620 ID=MS.gene26957.t1.exon2;Parent=MS.gene26957.t1
chr1.3 CDS 2855620 2856376 2855620 ID=cds.MS.gene26957.t1;Parent=MS.gene26957.t1
Gene Sequence

>MS.gene26957

ATGAAAAAATTGAGAATAGAAGACATATCGGAGATGGTGAATTTAGGGTTAGACTTAGAGACGGAGATTTTGGCGTGGCTGCCACTAAAGTCATTGATGCGTTTCAGATGTGTTCAGGCACGGATCTATGCATATAGAAATGGGGGCAGTTGACCCCACATGGTTAATATATTTTGAGATCAATAATGAGTAATTTTATTCTTGTAGTGATTAATAATGAGTAATTTTCATACATTGACCCCTCATGAAATATTTGAATGTCCCCACAGAGTATATATAAACCTTGACAAAGTATGCTACTAACATATACAAACTAATGGATCTTTCAAACAAAAAAAAAACATGCAAACTAATGGAGTATAATAGTATATTAGGCTTTGTTCGAAAGAAAAAAAACACTATTAATGCACTATCTTAAAATAATATATTGTCCCTACTTAATGGAAATTTATACCATAAAAAGAATTTTAATTTGTAGATTTTAACGAGTCTTTAATTTTTCTAATATATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAGTGTTTATTTATAAGTTCAAGTATTTTGCTCAATGATAATGATGTGATTATTGACTATTTCTTTTTCCACCCTACTCTCTTCTCGCGCACCCTACGGATTTCAAATTTTATCATCTCAAAAGCGTAAAGGTCCTTCCAAACCCTCCAAAATATGTTAAAACACCCTTAGAAACCCTCAGTTTTTTTAGGATTTTATAATCAGAATAGGGTACGCGGAATGAGAGTGTGTTGAAAAAAGAAATAACTGTTATTTAAATAGGGTTAAATAGTCGTTATTATTTTATCACTTTTGCATTGCTAAAAATTTTGTATTAATATTTATAATGTAAAATTTTTGCCCCCTCAAAGCGAAATTTCTGAATCCGTCACTGGATGTGTTCAACGATCTTGGAATGATCTTATTTAGAGCCCCGCCTTTCTGAAACGGCGGCACATGAATATGTCTGATAGTCCTAGTCTCATGATAGTTAATGAAAAACAAAACTATGTAACCCTTCTCTCATGTGACAACCTAATACACATCAAATCCCCCTTTTCCAACAATTCTCATTATCCCATAACAATCGAAGGTAGTTGTAACGGTGTTTTTTGTCTCAAAGGTTTGTGTTGGTATAATAGTTGTATAAATGAGTTAGCCATCTTGAACTCGACAACTAGAGAGGTCCATCGTATCCCTCACACCTGCTGCCACAATACCGGATCATACTTGTATGGTTTTGGTGCTGCTGATTCCAACATCATCGATTTCAAAGTTGTGAAACTCCGTATCAATTATCATGTGACAAAACACAAACTTTATGTTTCATCAGCGGAAGTTTATAGTCTAATCACTAAATCATGGACCCCTACTCGACATCCTCCTCCTCCTTTTACTATCATCACACGTCGATGTCCCATCAAATATAACACTCTTGTTAACGGCGTTTATCATTGGATTACAAACAATTCAGGCTACTATCGCTATGATGGTGTTGCAAATATCCTATGCTTTAACTTTCGCAACGATCAATTTCACCAACTCAGAGGGCCAAACTTATCAGCTAAAGATCGATACTTTCTATGTGATGATGTTGCTGAAATCAAGGGTTTTCTTGCTTATGTTGTGCAGTGTCACTATAGCAACTTGAAAATTTGGGTAATGGATCATCAAAATGGATGGGAGAAAAAGTACAACATTGTCCCACCTTTGTTCAATTTTCGTATGTGCGGTCTTTGGAAGAATGGTGATCAACTCCTTGGAGGAAAGGATGGAAAGTCCCTTGCATCATATGACCATCAAGGCAACTCACTTTGCCAATTTCAAATTGATGTTGATTATACTATGAATTTCTGGATTCATGAGTATGTACCAAGCATTGCTCCTTTGTCAGCATAG
Protein sequence

>MS.gene26957.t1

MKKLRIEDISEMVNLGLDLETEILAWLPLNCINELAILNSTTREVHRIPHTCCHNTGSYLYGFGAADSNIIDFKVVKLRINYHVTKHKLYVSSAEVYSLITKSWTPTRHPPPPFTIITRRCPIKYNTLVNGVYHWITNNSGYYRYDGVANILCFNFRNDQFHQLRGPNLSAKDRYFLCDDVAEIKGFLAYVVQCHYSNLKIWVMDHQNGWEKKYNIVPPLFNFRMCGLWKNGDQLLGGKDGKSLASYDHQGNSLCQFQIDVDYTMNFWIHEYVPSIAPLSA