AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50336


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50336.t1 MTR_4g023070 90.761 368 33 1 1 368 1 367 0.0 687
MS.gene50336.t1 MTR_4g023120 89.674 368 37 1 1 368 1 367 0.0 686
MS.gene50336.t1 MTR_4g023090 63.144 369 126 3 3 366 16 379 1.30e-160 456
MS.gene50336.t1 MTR_4g021785 63.043 368 110 4 3 368 9 352 2.49e-157 446
MS.gene50336.t1 MTR_4g023080 63.488 367 109 4 3 368 9 351 2.23e-156 443
MS.gene50336.t1 MTR_4g023380 60.152 394 96 7 3 368 16 376 8.94e-147 420
MS.gene50336.t1 MTR_4g023200 56.620 355 130 5 17 368 24 357 4.26e-128 372
MS.gene50336.t1 MTR_4g023130 56.403 367 94 5 3 368 9 310 4.50e-128 370
MS.gene50336.t1 MTR_4g023150 56.911 369 135 5 3 368 10 357 1.98e-127 370
MS.gene50336.t1 MTR_4g023190 56.911 369 134 6 3 368 10 356 5.87e-125 364
MS.gene50336.t1 MTR_3g103020 55.409 379 133 12 3 368 20 375 7.98e-124 362
MS.gene50336.t1 MTR_4g023440 54.076 368 111 5 3 368 18 329 2.88e-121 353
MS.gene50336.t1 MTR_4g094365 51.604 374 151 7 3 367 8 360 3.86e-115 339
MS.gene50336.t1 MTR_4g109280 52.688 372 147 9 3 368 8 356 8.07e-113 333
MS.gene50336.t1 MTR_4g109270 51.316 380 149 10 1 368 6 361 4.79e-110 326
MS.gene50336.t1 MTR_3g034180 51.444 381 153 10 3 368 123 486 5.59e-110 330
MS.gene50336.t1 MTR_4g116330 51.053 380 147 11 3 368 23 377 4.58e-109 324
MS.gene50336.t1 MTR_3g034160 51.697 383 149 11 3 368 9 372 8.81e-109 323
MS.gene50336.t1 MTR_4g117850 51.323 378 148 12 3 368 23 376 1.45e-108 323
MS.gene50336.t1 MTR_3g034130 52.877 365 137 10 3 351 9 354 1.55e-108 322
MS.gene50336.t1 MTR_4g117780 48.942 378 159 9 2 368 10 364 1.40e-106 317
MS.gene50336.t1 MTR_4g122850 53.678 367 133 15 14 364 12 357 3.54e-105 314
MS.gene50336.t1 MTR_4g117770 49.602 377 156 9 3 368 11 364 5.45e-103 308
MS.gene50336.t1 MTR_4g117810 49.602 377 156 9 3 368 11 364 5.45e-103 308
MS.gene50336.t1 MTR_8g433040 49.867 375 146 9 3 367 18 360 6.93e-103 308
MS.gene50336.t1 MTR_8g032380 49.867 375 146 9 3 367 18 360 6.93e-103 308
MS.gene50336.t1 MTR_8g032390 50.133 375 132 13 3 366 40 370 1.36e-99 300
MS.gene50336.t1 MTR_1g055135 48.285 379 162 11 3 367 13 371 2.23e-99 299
MS.gene50336.t1 MTR_6g060650 48.958 384 157 10 3 368 8 370 8.85e-98 295
MS.gene50336.t1 MTR_5g097210 48.396 374 161 12 3 367 9 359 1.04e-96 292
MS.gene50336.t1 MTR_5g070088 44.757 391 176 7 3 368 7 382 8.62e-96 290
MS.gene50336.t1 MTR_5g070080 46.250 400 154 13 3 368 10 382 4.99e-92 281
MS.gene50336.t1 MTR_5g070130 46.073 382 172 10 3 368 11 374 3.68e-91 279
MS.gene50336.t1 MTR_4g116330 45.789 380 128 11 3 368 23 338 7.43e-89 271
MS.gene50336.t1 MTR_4g117720 45.833 384 135 13 1 368 49 375 2.25e-88 271
MS.gene50336.t1 MTR_4g118380 46.757 370 151 9 3 346 8 357 7.97e-87 266
MS.gene50336.t1 MTR_4g121580 47.467 375 135 16 3 361 11 339 5.41e-86 266
MS.gene50336.t1 MTR_8g433030 46.361 371 119 11 3 366 40 337 7.63e-86 263
MS.gene50336.t1 MTR_4g117750 47.244 381 161 12 1 367 1 355 1.11e-82 260
MS.gene50336.t1 MTR_4g117750 51.240 121 44 2 250 368 373 480 9.40e-26 108
MS.gene50336.t1 MTR_1g055165 41.910 377 137 12 3 368 10 315 4.48e-76 238
MS.gene50336.t1 MTR_4g117870 46.078 306 108 10 67 367 10 263 1.16e-73 230
MS.gene50336.t1 MTR_8g013010 48.699 269 117 8 1 259 52 309 4.49e-72 227
MS.gene50336.t1 MTR_1g055195 39.286 336 160 9 47 368 170 475 4.28e-61 204
MS.gene50336.t1 MTR_4g118400 43.165 278 109 8 91 364 61 293 3.68e-59 193
MS.gene50336.t1 MTR_4g116320 50.862 232 88 6 144 368 43 255 1.05e-58 191
MS.gene50336.t1 MTR_7g079370 39.660 353 174 12 32 364 16 349 7.45e-58 192
MS.gene50336.t1 MTR_6g463430 54.187 203 71 4 170 368 15 199 2.97e-57 185
MS.gene50336.t1 MTR_2g048580 37.265 373 178 18 3 364 8 335 2.48e-55 185
MS.gene50336.t1 MTR_8g040935 50.481 208 81 5 169 368 12 205 5.78e-55 179
MS.gene50336.t1 MTR_7g079400 40.803 299 132 10 87 366 60 332 8.64e-54 181
MS.gene50336.t1 MTR_4g118370 39.716 282 125 10 94 368 14 257 3.32e-51 171
MS.gene50336.t1 MTR_4g116340 45.494 233 95 7 3 224 36 247 1.07e-49 167
MS.gene50336.t1 MTR_8g102520 36.193 373 162 15 3 364 8 315 9.98e-48 164
MS.gene50336.t1 MTR_4g114700 39.416 274 90 7 101 362 9 218 1.86e-42 148
MS.gene50336.t1 MTR_7g117720 46.465 198 74 6 3 191 10 184 3.31e-40 143
MS.gene50336.t1 MTR_7g117720 47.788 113 39 4 258 364 172 270 2.56e-20 90.1
MS.gene50336.t1 MTR_1g055250 40.249 241 111 9 136 365 46 264 9.89e-40 144
MS.gene50336.t1 MTR_1g055175 42.202 218 94 8 163 368 1 198 1.22e-38 137
MS.gene50336.t1 MTR_4g117530 40.086 232 84 6 138 368 73 250 2.16e-37 135
MS.gene50336.t1 MTR_4g117430 47.531 162 70 6 101 259 3 152 2.40e-35 127
MS.gene50336.t1 MTR_1g094210 29.429 350 209 12 3 343 57 377 2.24e-34 131
MS.gene50336.t1 MTR_1g097490 30.623 369 221 12 3 363 49 390 5.01e-34 130
MS.gene50336.t1 MTR_1g094210 29.551 379 212 15 3 363 57 398 8.78e-34 129
MS.gene50336.t1 MTR_1g097560 29.024 379 210 16 3 363 36 373 9.89e-34 129
MS.gene50336.t1 MTR_4g107820 30.868 311 184 10 2 298 35 328 5.43e-33 127
MS.gene50336.t1 MTR_4g107780 30.868 311 184 10 2 298 35 328 5.43e-33 127
MS.gene50336.t1 MTR_4g107820 30.868 311 184 10 2 298 35 328 9.09e-33 127
MS.gene50336.t1 MTR_4g107780 30.868 311 184 10 2 298 35 328 9.56e-33 127
MS.gene50336.t1 MTR_1g097330 31.412 347 199 13 3 336 16 336 1.76e-32 126
MS.gene50336.t1 MTR_4g108820 32.881 295 144 14 3 290 42 289 6.41e-31 120
MS.gene50336.t1 MTR_4g023430 69.512 82 25 0 3 84 41 122 6.81e-30 114
MS.gene50336.t1 MTR_4g023430 58.242 91 20 2 283 368 142 219 3.92e-24 99.4
MS.gene50336.t1 MTR_2g046920 30.330 333 198 13 3 323 24 334 8.93e-30 118
MS.gene50336.t1 MTR_2g047832 28.409 352 202 13 3 324 29 360 1.24e-29 118
MS.gene50336.t1 MTR_8g101580 28.232 379 227 13 2 363 44 394 5.51e-29 116
MS.gene50336.t1 MTR_8g467140 31.023 303 182 12 3 292 32 320 1.15e-28 114
MS.gene50336.t1 MTR_2g021150 28.358 335 207 13 3 324 14 328 1.71e-28 114
MS.gene50336.t1 MTR_7g079420 33.094 278 126 11 100 363 905 1136 2.54e-28 117
MS.gene50336.t1 MTR_5g022420 28.916 332 196 15 3 324 27 328 2.65e-28 114
MS.gene50336.t1 MTR_3g009310 28.075 374 231 12 3 363 42 390 2.76e-28 114
MS.gene50336.t1 MTR_2g055970 28.457 376 228 14 3 363 211 560 2.87e-27 113
MS.gene50336.t1 MTR_4g055060 30.671 313 190 12 3 299 30 331 3.97e-27 110
MS.gene50336.t1 MTR_5g057790 31.922 307 185 11 3 299 46 338 5.79e-27 110
MS.gene50336.t1 MTR_5g023000 52.778 108 36 2 263 368 2 96 3.79e-26 100
MS.gene50336.t1 MTR_7g062100 29.703 404 214 18 3 365 24 398 6.30e-26 107
MS.gene50336.t1 MTR_3g023930 26.963 382 210 14 3 363 34 367 7.26e-26 107
MS.gene50336.t1 MTR_2g046830 28.743 334 204 13 3 324 25 336 1.59e-25 106
MS.gene50336.t1 MTR_3g013740 29.688 384 226 18 3 363 44 406 2.18e-25 106
MS.gene50336.t1 MTR_3g014540 30.412 388 210 21 3 366 29 380 4.82e-25 105
MS.gene50336.t1 MTR_4g061340 27.794 349 201 14 3 321 26 353 5.32e-25 105
MS.gene50336.t1 MTR_2g021155 28.653 349 201 13 6 336 39 357 1.12e-24 106
MS.gene50336.t1 MTR_4g118360 44.286 140 56 4 234 368 1 123 1.30e-24 97.8
MS.gene50336.t1 MTR_2g046900 28.280 343 202 14 3 324 28 347 1.57e-24 103
MS.gene50336.t1 MTR_4g122860 38.974 195 73 8 177 364 158 313 2.67e-24 102
MS.gene50336.t1 MTR_4g122860 50.000 70 33 1 3 72 70 137 5.14e-11 63.5
MS.gene50336.t1 MTR_6g021880 27.457 346 222 11 14 337 31 369 5.20e-24 102
MS.gene50336.t1 MTR_5g069120 41.667 156 80 3 13 158 1 155 5.29e-24 97.8
MS.gene50336.t1 MTR_3g036290 28.457 376 213 17 3 363 22 356 5.37e-24 101
MS.gene50336.t1 MTR_4g133170 27.914 326 190 12 2 304 3 306 7.95e-24 101
MS.gene50336.t1 MTR_3g006500 26.263 396 214 17 3 363 17 369 1.24e-23 100
MS.gene50336.t1 MTR_5g057690 31.392 309 174 15 3 299 46 328 1.88e-23 100
MS.gene50336.t1 MTR_7g070830 28.488 344 188 13 3 296 21 356 1.99e-23 100
MS.gene50336.t1 MTR_7g070440 27.586 319 185 10 5 294 9 310 4.81e-23 99.4
MS.gene50336.t1 MTR_3g030240 26.509 381 217 15 3 363 40 377 5.24e-23 99.4
MS.gene50336.t1 MTR_3g007360 30.208 384 208 22 6 364 55 403 5.48e-23 99.8
MS.gene50336.t1 MTR_3g010920 26.371 383 215 15 3 363 44 381 6.85e-23 99.0
MS.gene50336.t1 MTR_3g014570 27.062 388 224 16 3 366 29 381 8.57e-23 98.6
MS.gene50336.t1 MTR_6g065980 26.260 377 228 15 3 363 16 358 1.19e-22 98.2
MS.gene50336.t1 MTR_3g013770 27.792 385 230 13 3 366 33 390 1.21e-22 98.6
MS.gene50336.t1 MTR_7g070880 27.005 374 202 14 3 324 21 375 1.23e-22 99.0
MS.gene50336.t1 MTR_2g021050 26.190 378 227 14 2 367 4 341 1.24e-22 98.2
MS.gene50336.t1 MTR_3g010430 26.884 398 213 16 3 363 36 392 1.44e-22 98.6
MS.gene50336.t1 MTR_4g109290 42.581 155 55 7 3 153 9 133 1.80e-22 94.0
MS.gene50336.t1 MTR_5g057710 30.696 316 183 15 3 305 46 338 1.89e-22 97.8
MS.gene50336.t1 MTR_4g013180 27.671 365 194 13 3 324 11 348 2.14e-22 98.6
MS.gene50336.t1 MTR_2g028130 27.647 340 202 13 2 306 4 334 2.82e-22 97.8
MS.gene50336.t1 MTR_2g104340 25.060 419 225 15 3 368 14 396 2.90e-22 97.4
MS.gene50336.t1 MTR_2g461450 26.404 356 223 13 3 342 18 350 2.98e-22 97.1
MS.gene50336.t1 MTR_1g068875 29.231 325 192 12 2 306 3 309 4.38e-22 96.7
MS.gene50336.t1 MTR_7g057270 28.173 323 182 13 3 287 26 336 4.50e-22 97.1
MS.gene50336.t1 MTR_4g030830 26.257 358 211 13 3 324 9 349 5.48e-22 96.7
MS.gene50336.t1 MTR_3g010520 25.722 381 217 13 3 363 25 359 5.49e-22 96.3
MS.gene50336.t1 MTR_8g098830 37.989 179 85 8 171 342 35 194 5.50e-22 93.6
MS.gene50336.t1 MTR_3g010590 26.260 377 232 13 3 363 39 385 8.39e-22 95.9
MS.gene50336.t1 MTR_3g036430 26.455 378 206 15 3 363 20 342 9.73e-22 95.1
MS.gene50336.t1 MTR_0044s0300 25.521 384 231 15 3 363 38 389 1.28e-21 95.5
MS.gene50336.t1 MTR_7g056760 27.027 333 207 9 3 299 23 355 1.41e-21 95.5
MS.gene50336.t1 MTR_1g050542 25.538 372 241 15 3 363 58 404 1.41e-21 95.5
MS.gene50336.t1 MTR_3g007410 29.948 384 209 22 6 364 55 403 1.53e-21 95.5
MS.gene50336.t1 MTR_2g046800 29.651 344 174 18 3 299 14 336 2.11e-21 95.1
MS.gene50336.t1 MTR_2g021190 26.882 372 241 13 3 363 21 372 4.00e-21 94.0
MS.gene50336.t1 MTR_3g030250 25.459 381 226 15 3 363 37 379 4.08e-21 94.0
MS.gene50336.t1 MTR_3g007330 27.105 380 223 15 3 363 48 392 5.85e-21 93.6
MS.gene50336.t1 MTR_5g057020 29.470 302 184 13 3 299 46 323 5.98e-21 93.2
MS.gene50336.t1 MTR_3g006570 26.562 384 231 14 3 363 21 376 6.30e-21 93.6
MS.gene50336.t1 MTR_3g011020 28.723 376 218 15 3 362 28 369 8.16e-21 92.8
MS.gene50336.t1 MTR_1g068835 28.618 304 190 10 2 291 3 293 8.57e-21 93.2
MS.gene50336.t1 MTR_5g008530 71.667 60 15 1 1 60 16 73 1.00e-20 85.5
MS.gene50336.t1 MTR_4g129190 29.111 371 187 18 1 324 4 345 1.64e-20 92.4
MS.gene50336.t1 MTR_7g079450 39.216 153 64 6 218 364 1 130 1.72e-20 87.0
MS.gene50336.t1 MTR_7g061060 27.358 318 176 12 3 285 13 310 1.80e-20 92.4
MS.gene50336.t1 MTR_3g011060 26.357 387 229 13 3 362 28 385 1.98e-20 92.0
MS.gene50336.t1 MTR_1g054575 28.283 297 192 13 3 292 52 334 3.34e-20 92.4
MS.gene50336.t1 MTR_4g031770 25.828 302 195 9 3 290 4 290 3.66e-20 90.9
MS.gene50336.t1 MTR_2g021252 28.000 375 215 18 6 364 50 385 4.27e-20 90.9
MS.gene50336.t1 MTR_2g078900 27.922 308 176 15 3 290 33 314 5.46e-20 90.5
MS.gene50336.t1 MTR_7g066000 28.387 310 189 14 3 285 25 328 7.30e-20 90.5
MS.gene50336.t1 MTR_2g029990 27.749 382 223 18 4 363 52 402 7.50e-20 90.5
MS.gene50336.t1 MTR_0760s0010 27.733 375 215 17 8 363 52 389 8.69e-20 90.1
MS.gene50336.t1 MTR_3g010870 26.772 381 226 15 3 363 37 384 1.03e-19 90.1
MS.gene50336.t1 MTR_1g068860 27.619 315 183 13 1 291 2 295 1.10e-19 89.7
MS.gene50336.t1 MTR_7g445890 27.097 310 173 13 3 285 16 299 1.30e-19 89.7
MS.gene50336.t1 MTR_6g004660 28.808 302 189 8 3 285 16 310 1.33e-19 89.7
MS.gene50336.t1 MTR_6g027910 27.202 386 230 16 6 363 12 374 1.60e-19 89.4
MS.gene50336.t1 MTR_2g024110 27.914 326 198 12 2 306 3 312 1.60e-19 89.4
MS.gene50336.t1 MTR_7g052670 26.330 376 208 13 3 324 21 381 1.91e-19 89.7
MS.gene50336.t1 MTR_3g010620 24.873 394 233 16 1 363 31 392 2.20e-19 89.0
MS.gene50336.t1 MTR_5g069760 29.144 374 191 19 3 338 6 343 2.56e-19 88.6
MS.gene50336.t1 MTR_6g007135 26.804 388 233 16 3 363 26 389 2.65e-19 89.0
MS.gene50336.t1 MTR_7g407070 26.952 397 224 20 3 363 32 398 2.85e-19 89.0
MS.gene50336.t1 MTR_3g030330 25.195 385 231 14 3 363 20 371 2.90e-19 88.6
MS.gene50336.t1 MTR_3g024110 29.221 308 180 15 3 296 101 384 3.37e-19 89.0
MS.gene50336.t1 MTR_2g426070 28.060 335 200 12 4 306 7 332 3.58e-19 88.6
MS.gene50336.t1 MTR_2g426090 26.706 337 195 9 6 306 9 329 3.86e-19 88.6
MS.gene50336.t1 MTR_3g023940 25.641 390 221 15 3 363 34 383 4.30e-19 88.2
MS.gene50336.t1 MTR_7g056290 28.184 369 198 17 3 324 22 370 4.39e-19 88.6
MS.gene50336.t1 MTR_4g024890 25.414 362 228 15 4 338 11 357 4.54e-19 88.2
MS.gene50336.t1 MTR_5g011200 28.115 313 177 15 3 290 17 306 4.93e-19 87.8
MS.gene50336.t1 MTR_3g006670 30.000 310 164 16 3 285 49 332 4.93e-19 88.2
MS.gene50336.t1 MTR_1g088120 25.410 366 209 12 6 326 13 359 5.12e-19 88.2
MS.gene50336.t1 MTR_2g028160 26.979 341 201 14 2 304 4 334 5.28e-19 88.2
MS.gene50336.t1 MTR_6g017280 24.857 350 221 13 3 324 9 344 5.31e-19 87.8
MS.gene50336.t1 MTR_7g056390 28.533 368 198 17 3 324 18 366 5.47e-19 88.2
MS.gene50336.t1 MTR_2g426020 29.091 330 193 13 3 304 6 322 6.17e-19 87.8
MS.gene50336.t1 MTR_6g034720 47.475 99 50 2 138 235 72 169 6.74e-19 84.7
MS.gene50336.t1 MTR_3g024150 27.506 389 210 18 6 363 38 385 8.18e-19 87.4
MS.gene50336.t1 MTR_0128s0020 27.981 411 209 20 3 362 18 392 8.51e-19 87.4
MS.gene50336.t1 MTR_2g031720 27.586 319 210 8 3 306 6 318 9.33e-19 87.4
MS.gene50336.t1 MTR_2g437110 26.398 322 179 11 3 287 22 322 1.11e-18 87.8
MS.gene50336.t1 MTR_4g129160 28.313 332 180 14 3 287 7 327 1.22e-18 86.7
MS.gene50336.t1 MTR_3g072470 30.409 342 150 17 3 287 19 329 1.28e-18 87.0
MS.gene50336.t1 MTR_1g442850 25.500 400 213 15 5 348 7 377 1.37e-18 86.7
MS.gene50336.t1 MTR_5g069930 27.479 353 201 14 3 324 6 334 1.46e-18 86.7
MS.gene50336.t1 MTR_7g066850 24.069 403 249 13 3 366 23 407 1.46e-18 87.0
MS.gene50336.t1 MTR_3g010390 26.154 325 194 13 3 296 33 342 1.72e-18 86.7
MS.gene50336.t1 MTR_5g096710 27.431 401 230 18 3 365 23 400 1.74e-18 86.7
MS.gene50336.t1 MTR_3g036335 25.575 391 224 17 3 363 41 394 1.99e-18 86.3
MS.gene50336.t1 MTR_7g066100 26.814 317 192 11 3 285 11 321 2.23e-18 86.3
MS.gene50336.t1 MTR_2g426060 27.976 336 200 13 3 306 6 331 2.54e-18 86.3
MS.gene50336.t1 MTR_7g066840 26.257 358 201 14 3 324 23 353 2.65e-18 85.9
MS.gene50336.t1 MTR_7g028660 27.044 318 187 11 3 289 11 314 2.73e-18 85.9
MS.gene50336.t1 MTR_5g046260 23.242 327 201 10 3 324 4 285 3.13e-18 84.3
MS.gene50336.t1 MTR_2g025420 27.066 351 194 15 3 306 6 341 3.24e-18 85.9
MS.gene50336.t1 MTR_7g060960 28.492 358 166 17 3 329 32 330 3.38e-18 85.5
MS.gene50336.t1 MTR_4g070550 27.246 334 167 14 2 285 4 311 3.80e-18 85.5
MS.gene50336.t1 MTR_7g055930 27.415 383 203 16 3 324 13 381 5.96e-18 85.1
MS.gene50336.t1 MTR_3g009240 28.522 291 186 8 3 285 36 312 6.14e-18 84.7
MS.gene50336.t1 MTR_3g083640 26.031 388 220 17 3 363 55 402 6.26e-18 84.7
MS.gene50336.t1 MTR_2g047892 24.806 387 208 15 3 342 22 372 7.10e-18 84.7
MS.gene50336.t1 MTR_1g055070 28.519 270 147 14 2 238 48 304 8.94e-18 84.3
MS.gene50336.t1 MTR_2g425980 26.866 402 223 17 2 362 4 375 9.44e-18 84.3
MS.gene50336.t1 MTR_6g016285 25.243 412 253 14 3 367 21 424 9.58e-18 84.7
MS.gene50336.t1 MTR_7g055870 26.425 386 203 14 3 324 13 381 9.76e-18 84.3
MS.gene50336.t1 MTR_6g055210 26.649 379 223 14 3 336 22 390 1.09e-17 84.3
MS.gene50336.t1 MTR_7g017130 26.957 345 211 14 2 310 17 356 1.17e-17 84.0
MS.gene50336.t1 MTR_3g436150 28.756 386 225 19 3 363 32 392 1.21e-17 84.0
MS.gene50336.t1 MTR_3g011100 27.551 392 228 17 3 363 235 601 1.28e-17 84.7
MS.gene50336.t1 MTR_4g023100 73.077 52 14 0 317 368 65 116 1.41e-17 78.2
MS.gene50336.t1 MTR_7g017170 26.957 345 211 14 2 310 17 356 1.53e-17 84.0
MS.gene50336.t1 MTR_8g099460 27.885 312 189 12 1 289 3 301 1.89e-17 83.6
MS.gene50336.t1 MTR_7g050520 28.435 313 172 15 3 285 22 312 2.00e-17 83.2
MS.gene50336.t1 MTR_5g027330 24.194 310 201 10 2 285 39 340 2.17e-17 83.6
MS.gene50336.t1 MTR_5g056020 26.329 414 242 18 3 363 17 420 2.22e-17 83.6
MS.gene50336.t1 MTR_4g019990 27.247 356 208 14 3 324 6 344 2.48e-17 83.2
MS.gene50336.t1 MTR_3g010970 25.389 386 215 16 6 363 51 391 2.49e-17 83.2
MS.gene50336.t1 MTR_6g053240 28.617 311 184 12 2 290 27 321 2.66e-17 83.2
MS.gene50336.t1 MTR_5g027370 24.194 310 201 10 2 285 28 329 2.67e-17 83.2
MS.gene50336.t1 MTR_0649s0020 26.615 387 201 18 3 345 11 358 2.68e-17 82.8
MS.gene50336.t1 MTR_4g030090 25.668 374 223 14 4 338 15 372 3.24e-17 82.8
MS.gene50336.t1 MTR_1g115160 27.301 326 183 15 1 305 20 312 3.51e-17 82.4
MS.gene50336.t1 MTR_7g022600 27.027 370 212 16 1 324 21 378 3.78e-17 82.8
MS.gene50336.t1 MTR_7g013590 27.649 387 224 18 6 366 39 395 4.74e-17 82.4
MS.gene50336.t1 MTR_7g078860 26.891 357 214 13 3 324 9 353 4.92e-17 82.0
MS.gene50336.t1 MTR_3g009260 27.891 294 181 11 3 285 41 314 6.70e-17 81.6
MS.gene50336.t1 MTR_2g031640 27.217 327 197 9 3 306 6 314 6.86e-17 81.6
MS.gene50336.t1 MTR_5g046300 25.084 299 185 10 3 285 4 279 1.00e-16 80.9
MS.gene50336.t1 MTR_5g046290 25.084 299 185 10 3 285 4 279 1.00e-16 80.9
MS.gene50336.t1 MTR_7g007300 25.393 382 225 16 3 363 103 445 1.00e-16 81.6
MS.gene50336.t1 MTR_2g021770 26.521 411 236 15 6 368 15 407 1.10e-16 81.3
MS.gene50336.t1 MTR_7g062060 25.122 410 238 19 3 364 12 400 1.15e-16 81.3
MS.gene50336.t1 MTR_8g464770 24.205 409 219 15 3 364 12 376 1.91e-16 80.1
MS.gene50336.t1 MTR_7g056797 24.682 393 251 12 3 363 23 402 1.99e-16 80.5
MS.gene50336.t1 MTR_7g055987 27.597 308 175 14 6 287 23 308 2.08e-16 80.1
MS.gene50336.t1 MTR_7g050480 28.435 313 172 15 3 285 22 312 2.08e-16 80.1
MS.gene50336.t1 MTR_3g030350 27.154 383 230 17 3 363 35 390 2.12e-16 80.1
MS.gene50336.t1 MTR_7g061050 24.465 327 197 9 3 298 13 320 2.21e-16 80.1
MS.gene50336.t1 MTR_7g056200 26.238 404 214 13 3 365 23 383 2.46e-16 80.1
MS.gene50336.t1 MTR_4g030760 27.219 338 206 16 3 324 73 386 2.70e-16 80.1
MS.gene50336.t1 MTR_3g007430 28.283 297 178 13 6 285 46 324 2.70e-16 80.1
MS.gene50336.t1 MTR_5g068040 27.508 309 177 10 3 287 16 301 2.95e-16 79.7
MS.gene50336.t1 MTR_0128s0070 26.877 413 214 21 1 362 20 395 3.49e-16 79.7
MS.gene50336.t1 MTR_3g464470 25.926 351 210 14 3 324 7 336 3.91e-16 79.3
MS.gene50336.t1 MTR_7g056003 29.938 324 164 15 6 287 18 320 4.40e-16 79.3
MS.gene50336.t1 MTR_0064s0160 23.810 399 240 16 3 347 42 430 4.43e-16 79.7
MS.gene50336.t1 MTR_7g060940 26.316 361 194 14 3 324 22 349 4.53e-16 79.3
MS.gene50336.t1 MTR_7g077970 24.685 397 233 12 3 357 7 379 4.77e-16 79.3
MS.gene50336.t1 MTR_1g055145 47.191 89 44 2 13 99 43 130 5.72e-16 77.8
MS.gene50336.t1 MTR_7g078900 24.750 400 234 16 6 358 15 394 9.75e-16 78.6
MS.gene50336.t1 MTR_7g077070 25.737 373 215 14 3 326 16 375 1.16e-15 78.2
MS.gene50336.t1 MTR_4g030980 26.744 344 186 11 3 287 15 351 1.31e-15 78.2
MS.gene50336.t1 MTR_5g086590 30.198 202 126 8 106 298 8 203 1.57e-15 75.9
MS.gene50336.t1 MTR_5g007610 28.013 307 182 12 3 285 41 332 1.86e-15 77.4
MS.gene50336.t1 MTR_5g057643 31.455 213 130 6 3 206 46 251 1.94e-15 75.9
MS.gene50336.t1 MTR_0128s0010 27.507 349 211 14 3 324 21 354 1.94e-15 77.4
MS.gene50336.t1 MTR_2g025960 27.236 246 134 10 94 306 1 234 2.06e-15 76.6
MS.gene50336.t1 MTR_2g078850 26.446 363 206 18 6 342 33 360 2.12e-15 77.0
MS.gene50336.t1 MTR_8g039500 25.000 300 205 9 3 285 12 308 2.35e-15 76.6
MS.gene50336.t1 MTR_7g061090 24.706 340 200 12 3 300 22 347 2.36e-15 77.4
MS.gene50336.t1 MTR_3g464500 27.619 315 183 12 3 287 27 326 2.78e-15 77.0
MS.gene50336.t1 MTR_5g097350 22.857 385 239 12 12 364 25 383 2.89e-15 77.0
MS.gene50336.t1 MTR_2g021800 23.971 413 247 12 3 364 16 412 3.66e-15 76.6
MS.gene50336.t1 MTR_6g017270 25.723 346 176 13 3 324 9 297 3.92e-15 76.3
MS.gene50336.t1 MTR_5g022090 25.126 398 228 14 2 368 33 391 4.48e-15 76.3
MS.gene50336.t1 MTR_2g031680 26.380 326 198 12 3 306 6 311 4.66e-15 76.3
MS.gene50336.t1 MTR_8g066440 24.146 410 233 18 4 365 24 403 5.08e-15 76.3
MS.gene50336.t1 MTR_7g035295 24.534 322 162 9 3 285 16 295 5.33e-15 76.3
MS.gene50336.t1 MTR_7g016930 24.510 306 193 12 3 286 16 305 5.45e-15 75.5
MS.gene50336.t1 MTR_7g091630 25.272 368 205 15 3 324 32 375 5.52e-15 76.3
MS.gene50336.t1 MTR_0831s0010 26.115 314 198 10 3 289 50 356 5.81e-15 76.3
MS.gene50336.t1 MTR_0097s0030 26.400 375 211 16 1 342 12 354 6.49e-15 75.9
MS.gene50336.t1 MTR_2g047240 26.400 375 211 16 1 342 12 354 6.49e-15 75.9
MS.gene50336.t1 MTR_0115s0020 24.367 316 203 12 2 285 9 320 7.01e-15 75.9
MS.gene50336.t1 MTR_7g066080 26.161 409 248 18 3 365 16 416 7.50e-15 75.9
MS.gene50336.t1 MTR_7g055977 26.829 369 200 16 3 331 7 345 7.81e-15 75.5
MS.gene50336.t1 MTR_3g024040 26.384 307 197 12 10 307 38 324 8.02e-15 75.5
MS.gene50336.t1 MTR_0464s0020 27.679 336 175 14 3 287 23 341 9.63e-15 75.5
MS.gene50336.t1 MTR_4g033495 25.767 326 189 12 3 292 27 335 1.26e-14 75.1
MS.gene50336.t1 MTR_7g079640 26.154 390 218 18 3 359 13 365 1.46e-14 74.7
MS.gene50336.t1 MTR_4g028510 24.337 415 233 18 3 366 16 400 1.58e-14 75.1
MS.gene50336.t1 MTR_3g437520 27.003 337 179 14 3 287 23 344 1.60e-14 75.1
MS.gene50336.t1 MTR_0242s0060 28.267 329 177 15 3 287 9 322 1.63e-14 74.7
MS.gene50336.t1 MTR_0242s0040 28.267 329 177 15 3 287 9 322 1.63e-14 74.7
MS.gene50336.t1 MTR_8g073550 32.020 203 111 9 3 190 30 220 1.78e-14 72.4
MS.gene50336.t1 MTR_6g053260 27.244 312 182 13 2 290 336 625 1.92e-14 75.1
MS.gene50336.t1 MTR_7g009265 27.863 262 146 11 95 324 30 280 2.08e-14 73.6
MS.gene50336.t1 MTR_8g013005 60.714 56 20 1 315 368 1 56 2.37e-14 67.4
MS.gene50336.t1 MTR_3g009300 26.144 306 169 13 6 298 37 298 2.57e-14 73.9
MS.gene50336.t1 MTR_4g013185 26.344 372 208 16 6 324 13 371 2.73e-14 73.9
MS.gene50336.t1 MTR_7g078040 26.923 338 183 14 3 287 9 335 2.76e-14 74.3
MS.gene50336.t1 MTR_2g047878 25.065 383 225 15 3 363 21 363 3.78e-14 73.2
MS.gene50336.t1 MTR_7g091640 28.615 325 173 16 3 287 35 340 3.85e-14 73.6
MS.gene50336.t1 MTR_4g028750 25.610 328 185 13 3 285 16 329 4.07e-14 73.6
MS.gene50336.t1 MTR_1g056710 25.246 305 196 12 2 291 33 320 6.72e-14 72.8
MS.gene50336.t1 MTR_8g046310 25.000 308 193 11 6 289 19 312 6.80e-14 72.8
MS.gene50336.t1 MTR_1g061330 24.262 305 192 12 3 285 4 291 7.04e-14 72.8
MS.gene50336.t1 MTR_5g069390 22.892 415 248 15 3 368 26 417 7.42e-14 73.2
MS.gene50336.t1 MTR_2g047200 25.215 349 189 17 3 299 20 348 7.50e-14 72.8
MS.gene50336.t1 MTR_7g067680 27.181 298 177 12 3 290 49 316 8.18e-14 72.4
MS.gene50336.t1 MTR_4g013175 25.606 371 212 12 6 324 13 371 8.84e-14 72.4
MS.gene50336.t1 MTR_3g058470 24.646 353 185 15 2 329 36 332 9.19e-14 72.4
MS.gene50336.t1 MTR_4g031020 25.882 340 190 12 3 285 15 349 9.57e-14 72.4
MS.gene50336.t1 MTR_2g043400 25.849 383 219 13 3 345 23 380 1.03e-13 72.4
MS.gene50336.t1 MTR_8g041270 23.709 426 231 17 3 368 15 406 1.08e-13 72.4
MS.gene50336.t1 MTR_3g080370 25.758 396 232 14 17 363 35 417 1.53e-13 72.0
MS.gene50336.t1 MTR_5g043160 26.284 331 191 13 5 287 52 377 1.70e-13 72.0
MS.gene50336.t1 MTR_4g028660 22.864 398 253 13 3 364 16 395 2.67e-13 70.9
MS.gene50336.t1 MTR_4g027450 22.864 398 253 13 3 364 16 395 2.67e-13 70.9
MS.gene50336.t1 MTR_4g102410 24.625 333 196 16 3 289 61 384 2.90e-13 71.2
MS.gene50336.t1 MTR_7g052150 24.207 347 220 13 3 322 22 352 3.35e-13 70.9
MS.gene50336.t1 MTR_8g101940 25.364 343 215 11 3 324 2 324 3.46e-13 70.5
MS.gene50336.t1 MTR_5g072060 28.689 366 191 20 3 333 6 336 3.83e-13 71.2
MS.gene50336.t1 MTR_3g007300 27.882 373 202 15 3 363 49 366 4.62e-13 70.1
MS.gene50336.t1 MTR_4g030110 24.543 383 195 16 3 341 30 362 5.09e-13 70.1
MS.gene50336.t1 MTR_7g056260 26.176 340 156 16 3 287 14 313 1.07e-12 68.6
MS.gene50336.t1 MTR_5g023570 37.037 108 58 3 3 107 37 137 1.14e-12 65.5
MS.gene50336.t1 MTR_2g046860 26.778 239 150 10 95 324 6 228 1.36e-12 68.2
MS.gene50336.t1 MTR_1g112930 24.646 353 213 14 3 336 25 343 1.44e-12 68.6
MS.gene50336.t1 MTR_3g030310 22.778 360 218 13 3 330 21 352 1.56e-12 68.6
MS.gene50336.t1 MTR_1g071010 26.543 324 185 16 4 292 16 321 1.69e-12 68.6
MS.gene50336.t1 MTR_3g058440 27.391 230 140 9 2 213 34 254 1.71e-12 67.8
MS.gene50336.t1 MTR_7g056710 26.367 311 180 13 3 285 18 307 1.94e-12 68.2
MS.gene50336.t1 MTR_6g086825 25.776 419 230 22 3 368 70 460 2.00e-12 68.6
MS.gene50336.t1 MTR_1g055200 48.148 81 40 2 97 177 5 83 2.18e-12 63.5
MS.gene50336.t1 MTR_4g028680 24.257 404 245 17 3 366 16 398 2.20e-12 68.2
MS.gene50336.t1 MTR_1g007450 24.062 320 210 11 3 289 12 331 2.40e-12 68.2
MS.gene50336.t1 MTR_7g066010 26.545 275 150 9 3 237 21 283 3.03e-12 67.8
MS.gene50336.t1 MTR_7g056717 27.632 304 176 13 8 285 27 312 3.32e-12 67.8
MS.gene50336.t1 MTR_7g056170 23.204 362 172 11 3 298 75 396 3.46e-12 67.8
MS.gene50336.t1 MTR_6g013270 25.633 316 184 13 3 291 29 320 3.58e-12 67.4
MS.gene50336.t1 MTR_2g006360 28.239 301 161 14 6 300 49 300 3.71e-12 67.4
MS.gene50336.t1 MTR_7g078840 24.802 379 217 13 3 324 10 377 4.13e-12 67.4
MS.gene50336.t1 MTR_5g057040 33.129 163 97 7 3 155 46 206 4.32e-12 68.2
MS.gene50336.t1 MTR_3g058480 26.087 299 176 12 2 277 38 314 4.75e-12 66.6
MS.gene50336.t1 MTR_7g055830 24.879 414 194 17 3 366 13 359 5.20e-12 67.0
MS.gene50336.t1 MTR_0054s0090 22.864 398 247 15 11 366 25 404 5.82e-12 67.0
MS.gene50336.t1 MTR_4g037465 26.098 387 219 18 3 350 21 379 5.82e-12 67.0
MS.gene50336.t1 MTR_2g010900 25.407 307 190 11 24 298 4 303 5.95e-12 66.6
MS.gene50336.t1 MTR_2g021210 25.073 343 221 14 3 338 84 397 7.02e-12 66.6
MS.gene50336.t1 MTR_4g130330 23.902 410 239 17 3 366 7 389 9.70e-12 66.2
MS.gene50336.t1 MTR_7g069550 26.247 381 201 19 3 333 14 364 1.11e-11 65.9
MS.gene50336.t1 MTR_3g013470 26.074 326 198 13 24 324 16 323 1.15e-11 65.9
MS.gene50336.t1 MTR_5g048160 22.531 324 204 13 2 285 3 319 1.20e-11 65.9
MS.gene50336.t1 MTR_6g017305 27.638 199 123 7 102 285 5 197 1.24e-11 65.1
MS.gene50336.t1 MTR_3g010870 26.724 232 141 8 3 222 37 251 1.27e-11 65.5
MS.gene50336.t1 MTR_3g011120 23.684 304 205 10 3 285 14 311 1.28e-11 65.9
MS.gene50336.t1 MTR_1g037540 24.823 282 160 10 3 237 5 281 1.35e-11 65.9
MS.gene50336.t1 MTR_7g061010 28.037 321 168 14 3 287 22 315 1.46e-11 65.5
MS.gene50336.t1 MTR_2g104280 23.022 417 245 14 3 368 14 405 1.64e-11 65.5
MS.gene50336.t1 MTR_3g011650 28.311 219 132 8 6 214 82 285 1.67e-11 64.7
MS.gene50336.t1 MTR_7g050490 30.457 197 106 8 3 184 8 188 1.67e-11 63.2
MS.gene50336.t1 MTR_6g065510 26.800 250 136 11 103 324 59 289 1.69e-11 65.1
MS.gene50336.t1 MTR_1g097370 24.159 327 160 13 3 324 68 311 2.06e-11 65.5
MS.gene50336.t1 MTR_3g009290 27.854 219 128 8 3 210 35 234 2.27e-11 63.9
MS.gene50336.t1 MTR_3g009250 28.182 220 134 8 3 213 41 245 2.59e-11 63.5
MS.gene50336.t1 MTR_1g114700 26.263 396 220 20 3 363 29 387 3.52e-11 64.3
MS.gene50336.t1 MTR_5g064700 22.293 314 182 11 98 368 74 368 3.53e-11 64.3
MS.gene50336.t1 MTR_7g034310 27.049 244 128 12 139 364 17 228 4.00e-11 62.8
MS.gene50336.t1 MTR_6g034830 36.283 113 54 3 1 111 18 114 4.06e-11 60.1
MS.gene50336.t1 MTR_2g031700 27.692 260 146 12 3 246 6 239 5.39e-11 63.2
MS.gene50336.t1 MTR_4g080200 28.516 256 143 11 1 237 1 235 6.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50336.t1 AT3G06240 26.895 409 226 12 3 363 36 419 5.27e-23 100
MS.gene50336.t1 AT3G23880 27.303 304 192 13 2 290 13 302 2.41e-20 91.7
MS.gene50336.t1 AT4G12560 25.063 395 242 15 3 367 4 374 3.07e-20 91.7
MS.gene50336.t1 AT4G12560 25.063 395 242 15 3 367 4 374 3.07e-20 91.7
MS.gene50336.t1 AT4G12560 25.063 395 242 15 3 367 4 374 3.07e-20 91.7
MS.gene50336.t1 AT3G16210 25.926 297 178 12 3 289 5 269 4.04e-17 82.0
MS.gene50336.t1 AT4G22390 27.129 317 186 16 2 291 3 301 3.73e-16 79.7
MS.gene50336.t1 AT4G22390 27.129 317 186 16 2 291 3 301 3.92e-16 79.7
MS.gene50336.t1 AT3G52320 24.415 299 204 10 2 290 26 312 1.34e-15 77.8
MS.gene50336.t1 AT1G11620 26.687 326 188 13 1 300 4 304 2.51e-15 77.0
MS.gene50336.t1 AT3G08750 23.759 282 182 10 3 276 12 268 3.37e-14 73.6
MS.gene50336.t1 AT1G33530 26.606 327 210 11 1 318 95 400 4.38e-14 73.6
MS.gene50336.t1 AT2G40925 23.718 312 201 10 2 291 26 322 2.50e-13 71.2
MS.gene50336.t1 AT3G21120 23.137 255 171 10 1 240 1 245 4.43e-13 70.1
MS.gene50336.t1 AT1G47790 22.742 299 208 9 2 293 24 306 9.03e-13 69.3
MS.gene50336.t1 AT3G22650 22.910 323 219 12 3 310 9 316 9.15e-12 66.2
MS.gene50336.t1 AT3G16590 25.000 296 176 12 3 275 5 277 9.58e-12 66.2
MS.gene50336.t1 AT3G21410 25.153 326 203 16 3 310 38 340 1.53e-11 65.9
MS.gene50336.t1 AT2G40910 23.047 256 177 6 2 245 61 308 1.70e-11 65.9
MS.gene50336.t1 AT2G40910 23.047 256 177 6 2 245 68 315 3.32e-11 64.7
MS.gene50336.t1 AT1G12870 21.522 381 232 16 3 349 33 380 6.78e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAATGGATTAACTTTAT+TGG 0.141488 4.4:+78323566 None:intergenic
ACAGAAAATGGTGATATTAT+TGG 0.164193 4.4:-78323081 MS.gene50336:CDS
TCTCGTTTAGAGACAATATT+TGG 0.211449 4.4:-78323512 MS.gene50336:CDS
CATTCTGGTTTGTGGGTATC+TGG 0.231608 4.4:-78323294 MS.gene50336:CDS
TCAAATTCTGTTGAGGTTAC+AGG 0.238787 4.4:-78324006 MS.gene50336:CDS
CTGGAGAATTTCTCAGTCTA+TGG 0.261173 4.4:-78323275 MS.gene50336:CDS
CCTATGTATTCTACAGAAAA+TGG 0.272991 4.4:-78323093 MS.gene50336:CDS
AAATCCATAGATCGAATTTC+AGG 0.284233 4.4:+78323846 None:intergenic
AAAGCGTATATTAATCTATA+TGG 0.286604 4.4:-78323636 MS.gene50336:CDS
TATATTAATCTATATGGTTT+TGG 0.298100 4.4:-78323630 MS.gene50336:CDS
CATTGTTGACTTTGATTTAA+CGG 0.303766 4.4:-78323373 MS.gene50336:CDS
CTTCCTCAGCATGTCATTCC+TGG 0.305748 4.4:-78323168 MS.gene50336:CDS
AAAATATGGTGGTATTAAAT+TGG 0.309856 4.4:-78323058 MS.gene50336:CDS
ATCTCCTGAAATTCGATCTA+TGG 0.311692 4.4:-78323850 MS.gene50336:CDS
CACAGAGCATTAGTACATTC+TGG 0.320173 4.4:-78323309 MS.gene50336:CDS
GGTGATATTATTGGAAAATA+TGG 0.325508 4.4:-78323072 MS.gene50336:CDS
GTAATGATACAATTGAAATA+TGG 0.328111 4.4:-78323239 MS.gene50336:CDS
TTCGCGTCGTGATTTAGTTT+TGG 0.338685 4.4:-78323400 MS.gene50336:CDS
GTACTATTATTCCAGATTTG+TGG 0.367524 4.4:-78323127 MS.gene50336:CDS
GAGGGTAATCACTTACCTTA+TGG 0.385311 4.4:-78323480 MS.gene50336:CDS
TACATGACCCTTTAATTTCA+AGG 0.385702 4.4:+78323754 None:intergenic
AGTCTATGGGTTAAGGATAC+TGG 0.398340 4.4:-78323261 MS.gene50336:CDS
GTGAAAGTAGTCCACAAATC+TGG 0.398857 4.4:+78323116 None:intergenic
TGGTGTTCCTCAATCACATT+TGG 0.406622 4.4:-78323541 MS.gene50336:CDS
ATTTCTCAGTCTATGGGTTA+AGG 0.409114 4.4:-78323268 MS.gene50336:CDS
GCTCTGTGATCAACATCATT+TGG 0.411538 4.4:+78323324 None:intergenic
AAAGTTAATCCATTCTTAGT+TGG 0.417793 4.4:-78323561 MS.gene50336:CDS
ATTAGTACATTCTGGTTTGT+GGG 0.428082 4.4:-78323301 MS.gene50336:CDS
CATTAGTACATTCTGGTTTG+TGG 0.428815 4.4:-78323302 MS.gene50336:CDS
CAGTTAAAGTTGGGTGAAGC+AGG 0.434268 4.4:+78323801 None:intergenic
GTCATCGGAACATATACATT+TGG 0.437521 4.4:-78323710 MS.gene50336:CDS
ATATAGATTAATATACGCTT+TGG 0.449097 4.4:+78323638 None:intergenic
GAGTCTCTACTTTCACTCTC+TGG 0.466024 4.4:-78322958 MS.gene50336:CDS
TCAAATGCATTTGTAAGTTG+TGG 0.467569 4.4:-78323965 MS.gene50336:CDS
TCAAGGGGAAAATAAGAGTC+TGG 0.478722 4.4:+78323771 None:intergenic
TGGAAGGGAACAGTTAAAGT+TGG 0.481061 4.4:+78323791 None:intergenic
TGATCAACATCATTTGGAAC+AGG 0.489346 4.4:+78323330 None:intergenic
TTATATTCTTGTACTGTCAT+CGG 0.493237 4.4:-78323725 MS.gene50336:CDS
AATACAAAGTGCATTCGTCT+TGG 0.494278 4.4:-78323206 MS.gene50336:CDS
ATGATTATAGAGAAGGAGAA+GGG 0.495201 4.4:-78323455 MS.gene50336:CDS
TGAGGAACACCAACTAAGAA+TGG 0.498401 4.4:+78323552 None:intergenic
ACATGACCCTTTAATTTCAA+GGG 0.503333 4.4:+78323755 None:intergenic
TAATGATACAATTGAAATAT+GGG 0.505203 4.4:-78323238 MS.gene50336:CDS
TCTCTATAATCATCGCCATA+AGG 0.509139 4.4:+78323465 None:intergenic
TGGAGAATTTCTCAGTCTAT+GGG 0.524018 4.4:-78323274 MS.gene50336:CDS
ATCTGGAATAATAGTACAGA+GGG 0.524358 4.4:+78323133 None:intergenic
GGAAGGGAACAGTTAAAGTT+GGG 0.524712 4.4:+78323792 None:intergenic
TTATAGAGAAGGAGAAGGGG+TGG 0.546396 4.4:-78323451 MS.gene50336:CDS
TGATCATTCAAATTCTGTTG+AGG 0.546882 4.4:-78324013 MS.gene50336:CDS
GATGATTATAGAGAAGGAGA+AGG 0.547437 4.4:-78323456 MS.gene50336:CDS
GAAATTAAAGGGTCATGTAG+AGG 0.551569 4.4:-78323750 MS.gene50336:CDS
GAAGTATAATGACAAAGGAC+AGG 0.554463 4.4:-78323034 MS.gene50336:CDS
AAATTAAAGGGTCATGTAGA+GGG 0.560628 4.4:-78323749 MS.gene50336:CDS
TTGACTTTGATTTAACGGAA+AGG 0.572604 4.4:-78323368 MS.gene50336:CDS
CATGACCCTTTAATTTCAAG+GGG 0.573018 4.4:+78323756 None:intergenic
TATGGCGATGATTATAGAGA+AGG 0.582441 4.4:-78323462 MS.gene50336:CDS
GGGGAAAATAAGAGTCTGGA+AGG 0.583029 4.4:+78323775 None:intergenic
TTCGGAAGGACTGTTGCAGA+AGG 0.591659 4.4:+78322996 None:intergenic
TACATTTGGAATCCATCCAC+CGG 0.591847 4.4:-78323696 MS.gene50336:CDS
ATTTGAATGATCAGTTCTTG+AGG 0.594660 4.4:+78324023 None:intergenic
CTCTGTATACACGACAACTT+CGG 0.602313 4.4:+78322978 None:intergenic
GTCTAGAGATGATTATGTGG+TGG 0.603968 4.4:-78323598 MS.gene50336:CDS
CAATATTTGGAAAGAAATCG+AGG 0.610697 4.4:-78323499 MS.gene50336:CDS
TGATTATAGAGAAGGAGAAG+GGG 0.613001 4.4:-78323454 MS.gene50336:CDS
TTGGTGAAGTATAATGACAA+AGG 0.632256 4.4:-78323039 MS.gene50336:CDS
TGACCAGGAATGACATGCTG+AGG 0.635899 4.4:+78323165 None:intergenic
GTATACACGACAACTTCGGA+AGG 0.636945 4.4:+78322982 None:intergenic
AATATTTGGAAAGAAATCGA+GGG 0.638775 4.4:-78323498 MS.gene50336:CDS
GATATTATTGGAAAATATGG+TGG 0.639099 4.4:-78323069 MS.gene50336:CDS
AAATGTGAATTTGCAAAGTG+AGG 0.647953 4.4:+78323924 None:intergenic
AGAGGGTTAAAGTAGTGACC+AGG 0.655673 4.4:+78323150 None:intergenic
TCAGTCTAGAGATGATTATG+TGG 0.684477 4.4:-78323601 MS.gene50336:CDS
AATCTGGAATAATAGTACAG+AGG 0.686037 4.4:+78323132 None:intergenic
GGGAAAATAAGAGTCTGGAA+GGG 0.705129 4.4:+78323776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGATACAATTGAAATAT+GGG - chr4.4:78323742-78323761 MS.gene50336:CDS 15.0%
!!! TATATTAATCTATATGGTTT+TGG - chr4.4:78323350-78323369 MS.gene50336:CDS 15.0%
!! AAAATATGGTGGTATTAAAT+TGG - chr4.4:78323922-78323941 MS.gene50336:CDS 20.0%
!! AAAGCGTATATTAATCTATA+TGG - chr4.4:78323344-78323363 MS.gene50336:CDS 20.0%
!! ATATAGATTAATATACGCTT+TGG + chr4.4:78323345-78323364 None:intergenic 20.0%
!! GTAATGATACAATTGAAATA+TGG - chr4.4:78323741-78323760 MS.gene50336:CDS 20.0%
!!! TAAGAATGGATTAACTTTAT+TGG + chr4.4:78323417-78323436 None:intergenic 20.0%
! AAAGTTAATCCATTCTTAGT+TGG - chr4.4:78323419-78323438 MS.gene50336:CDS 25.0%
! AATATTTGGAAAGAAATCGA+GGG - chr4.4:78323482-78323501 MS.gene50336:CDS 25.0%
! ACAGAAAATGGTGATATTAT+TGG - chr4.4:78323899-78323918 MS.gene50336:CDS 25.0%
! GATATTATTGGAAAATATGG+TGG - chr4.4:78323911-78323930 MS.gene50336:CDS 25.0%
! GGTGATATTATTGGAAAATA+TGG - chr4.4:78323908-78323927 MS.gene50336:CDS 25.0%
! TTATATTCTTGTACTGTCAT+CGG - chr4.4:78323255-78323274 MS.gene50336:CDS 25.0%
!! ATTTTCCCCTTGAAATTAAA+GGG - chr4.4:78323219-78323238 MS.gene50336:CDS 25.0%
!! CATTTTCTGTAGAATACATA+GGG + chr4.4:78323889-78323908 None:intergenic 25.0%
!! TATTTTCCCCTTGAAATTAA+AGG - chr4.4:78323218-78323237 MS.gene50336:CDS 25.0%
!!! CATTGTTGACTTTGATTTAA+CGG - chr4.4:78323607-78323626 MS.gene50336:CDS 25.0%
AAAAACTCCAAATGTGATTG+AGG + chr4.4:78323449-78323468 None:intergenic 30.0%
AAATCCATAGATCGAATTTC+AGG + chr4.4:78323137-78323156 None:intergenic 30.0%
AAATGTGAATTTGCAAAGTG+AGG + chr4.4:78323059-78323078 None:intergenic 30.0%
AAATTAAAGGGTCATGTAGA+GGG - chr4.4:78323231-78323250 MS.gene50336:CDS 30.0%
ATGATTATAGAGAAGGAGAA+GGG - chr4.4:78323525-78323544 MS.gene50336:CDS 30.0%
ATTTGAATGATCAGTTCTTG+AGG + chr4.4:78322960-78322979 None:intergenic 30.0%
CAATATTTGGAAAGAAATCG+AGG - chr4.4:78323481-78323500 MS.gene50336:CDS 30.0%
CCTATGTATTCTACAGAAAA+TGG - chr4.4:78323887-78323906 MS.gene50336:CDS 30.0%
GTACTATTATTCCAGATTTG+TGG - chr4.4:78323853-78323872 MS.gene50336:CDS 30.0%
TCAAATGCATTTGTAAGTTG+TGG - chr4.4:78323015-78323034 MS.gene50336:CDS 30.0%
TCTCGTTTAGAGACAATATT+TGG - chr4.4:78323468-78323487 MS.gene50336:CDS 30.0%
TGATCATTCAAATTCTGTTG+AGG - chr4.4:78322967-78322986 MS.gene50336:CDS 30.0%
TTGGTGAAGTATAATGACAA+AGG - chr4.4:78323941-78323960 MS.gene50336:CDS 30.0%
! AAGTATTTGTCTTTTCGATC+CGG + chr4.4:78323306-78323325 None:intergenic 30.0%
! AATCTGGAATAATAGTACAG+AGG + chr4.4:78323851-78323870 None:intergenic 30.0%
! ACATGACCCTTTAATTTCAA+GGG + chr4.4:78323228-78323247 None:intergenic 30.0%
! ATCTGGAATAATAGTACAGA+GGG + chr4.4:78323850-78323869 None:intergenic 30.0%
! CCATTTTCTGTAGAATACAT+AGG + chr4.4:78323890-78323909 None:intergenic 30.0%
! TACATGACCCTTTAATTTCA+AGG + chr4.4:78323229-78323248 None:intergenic 30.0%
! TGTGTTTTGCAAAGTTAAGT+TGG + chr4.4:78323082-78323101 None:intergenic 30.0%
! TTGACTTTGATTTAACGGAA+AGG - chr4.4:78323612-78323631 MS.gene50336:CDS 30.0%
! TTTTTAATGGGGCTATTCAT+TGG - chr4.4:78323552-78323571 MS.gene50336:CDS 30.0%
!! ATTAGTACATTCTGGTTTGT+GGG - chr4.4:78323679-78323698 MS.gene50336:CDS 30.0%
AATACAAAGTGCATTCGTCT+TGG - chr4.4:78323774-78323793 MS.gene50336:CDS 35.0%
ATCTCCTGAAATTCGATCTA+TGG - chr4.4:78323130-78323149 MS.gene50336:CDS 35.0%
GAAATTAAAGGGTCATGTAG+AGG - chr4.4:78323230-78323249 MS.gene50336:CDS 35.0%
GAAGTATAATGACAAAGGAC+AGG - chr4.4:78323946-78323965 MS.gene50336:CDS 35.0%
GATGATTATAGAGAAGGAGA+AGG - chr4.4:78323524-78323543 MS.gene50336:CDS 35.0%
GTCATCGGAACATATACATT+TGG - chr4.4:78323270-78323289 MS.gene50336:CDS 35.0%
TATGGCGATGATTATAGAGA+AGG - chr4.4:78323518-78323537 MS.gene50336:CDS 35.0%
TCAAATTCTGTTGAGGTTAC+AGG - chr4.4:78322974-78322993 MS.gene50336:CDS 35.0%
TCAGTCTAGAGATGATTATG+TGG - chr4.4:78323379-78323398 MS.gene50336:CDS 35.0%
TCTCTATAATCATCGCCATA+AGG + chr4.4:78323518-78323537 None:intergenic 35.0%
TGATTATAGAGAAGGAGAAG+GGG - chr4.4:78323526-78323545 MS.gene50336:CDS 35.0%
TGGAGAATTTCTCAGTCTAT+GGG - chr4.4:78323706-78323725 MS.gene50336:CDS 35.0%
! AATGACAAAGGACAGGTTTT+AGG - chr4.4:78323953-78323972 MS.gene50336:CDS 35.0%
! ATGACAAAGGACAGGTTTTA+GGG - chr4.4:78323954-78323973 MS.gene50336:CDS 35.0%
! ATTTCTCAGTCTATGGGTTA+AGG - chr4.4:78323712-78323731 MS.gene50336:CDS 35.0%
! CATGACCCTTTAATTTCAAG+GGG + chr4.4:78323227-78323246 None:intergenic 35.0%
! TGATCAACATCATTTGGAAC+AGG + chr4.4:78323653-78323672 None:intergenic 35.0%
!! CATTAGTACATTCTGGTTTG+TGG - chr4.4:78323678-78323697 MS.gene50336:CDS 35.0%
CTCTGTATACACGACAACTT+CGG + chr4.4:78324005-78324024 None:intergenic 40.0%
CTGGAGAATTTCTCAGTCTA+TGG - chr4.4:78323705-78323724 MS.gene50336:CDS 40.0%
GAGGGTAATCACTTACCTTA+TGG - chr4.4:78323500-78323519 MS.gene50336:CDS 40.0%
GCTCTGTGATCAACATCATT+TGG + chr4.4:78323659-78323678 None:intergenic 40.0%
GGAAGGGAACAGTTAAAGTT+GGG + chr4.4:78323191-78323210 None:intergenic 40.0%
GGGAAAATAAGAGTCTGGAA+GGG + chr4.4:78323207-78323226 None:intergenic 40.0%
GTCTAGAGATGATTATGTGG+TGG - chr4.4:78323382-78323401 MS.gene50336:CDS 40.0%
GTGAAAGTAGTCCACAAATC+TGG + chr4.4:78323867-78323886 None:intergenic 40.0%
TCAAGGGGAAAATAAGAGTC+TGG + chr4.4:78323212-78323231 None:intergenic 40.0%
TGAGGAACACCAACTAAGAA+TGG + chr4.4:78323431-78323450 None:intergenic 40.0%
TGGAAGGGAACAGTTAAAGT+TGG + chr4.4:78323192-78323211 None:intergenic 40.0%
TGGTGTTCCTCAATCACATT+TGG - chr4.4:78323439-78323458 MS.gene50336:CDS 40.0%
! AGAAGGGGTGGTTTTTAATG+GGG - chr4.4:78323541-78323560 MS.gene50336:CDS 40.0%
! AGTCTATGGGTTAAGGATAC+TGG - chr4.4:78323719-78323738 MS.gene50336:CDS 40.0%
! CACAGAGCATTAGTACATTC+TGG - chr4.4:78323671-78323690 MS.gene50336:CDS 40.0%
! GAGAAGGGGTGGTTTTTAAT+GGG - chr4.4:78323540-78323559 MS.gene50336:CDS 40.0%
! TACATTTGGAATCCATCCAC+CGG - chr4.4:78323284-78323303 MS.gene50336:CDS 40.0%
! TATTTGTCTTTTCGATCCGG+TGG + chr4.4:78323303-78323322 None:intergenic 40.0%
!! TTCGCGTCGTGATTTAGTTT+TGG - chr4.4:78323580-78323599 MS.gene50336:CDS 40.0%
AGAGGGTTAAAGTAGTGACC+AGG + chr4.4:78323833-78323852 None:intergenic 45.0%
CAGTTAAAGTTGGGTGAAGC+AGG + chr4.4:78323182-78323201 None:intergenic 45.0%
GAGTCTCTACTTTCACTCTC+TGG - chr4.4:78324022-78324041 MS.gene50336:CDS 45.0%
GGGGAAAATAAGAGTCTGGA+AGG + chr4.4:78323208-78323227 None:intergenic 45.0%
GTATACACGACAACTTCGGA+AGG + chr4.4:78324001-78324020 None:intergenic 45.0%
TTATAGAGAAGGAGAAGGGG+TGG - chr4.4:78323529-78323548 MS.gene50336:CDS 45.0%
! GGAGAAGGGGTGGTTTTTAA+TGG - chr4.4:78323539-78323558 MS.gene50336:CDS 45.0%
!! CATTCTGGTTTGTGGGTATC+TGG - chr4.4:78323686-78323705 MS.gene50336:CDS 45.0%
CTTCCTCAGCATGTCATTCC+TGG - chr4.4:78323812-78323831 MS.gene50336:CDS 50.0%
TGACCAGGAATGACATGCTG+AGG + chr4.4:78323818-78323837 None:intergenic 50.0%
TTCGGAAGGACTGTTGCAGA+AGG + chr4.4:78323987-78324006 None:intergenic 50.0%
! TGTCTTTTCGATCCGGTGGA+TGG + chr4.4:78323299-78323318 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 78322948 78324054 78322948 ID=MS.gene50336
chr4.4 mRNA 78322948 78324054 78322948 ID=MS.gene50336.t1;Parent=MS.gene50336
chr4.4 exon 78322948 78324054 78322948 ID=MS.gene50336.t1.exon1;Parent=MS.gene50336.t1
chr4.4 CDS 78322948 78324054 78322948 ID=cds.MS.gene50336.t1;Parent=MS.gene50336.t1
Gene Sequence

>MS.gene50336

ATGGATCTTCCTCAAGAACTGATCATTCAAATTCTGTTGAGGTTACAGGTGAAGTCTCTTATATTTTTCAAATGCATTTGTAAGTTGTGGTTTTCTATTATCTCTGATCCTCACTTTGCAAATTCACATTTCCAACTTAACTTTGCAAAACACACTCGTAGATTTTTATGCATATCAGCTCTATCTCCTGAAATTCGATCTATGGATTTTGATGCATTTCTTAACGATGCTCCTGCTTCACCCAACTTTAACTGTTCCCTTCCAGACTCTTATTTTCCCCTTGAAATTAAAGGGTCATGTAGAGGGTTTATATTCTTGTACTGTCATCGGAACATATACATTTGGAATCCATCCACCGGATCGAAAAGACAAATACTTATGTCTGCTTTTAATACCAAAGCGTATATTAATCTATATGGTTTTGGTTATGATCAGTCTAGAGATGATTATGTGGTGGTTTTATTGTCCAATAAAGTTAATCCATTCTTAGTTGGTGTTCCTCAATCACATTTGGAGTTTTTCTCGTTTAGAGACAATATTTGGAAAGAAATCGAGGGTAATCACTTACCTTATGGCGATGATTATAGAGAAGGAGAAGGGGTGGTTTTTAATGGGGCTATTCATTGGTTGTCTTCGCGTCGTGATTTAGTTTTGGATGTCATTGTTGACTTTGATTTAACGGAAAGGAAATTGTTTGAGATGCCTGTTCCAAATGATGTTGATCACAGAGCATTAGTACATTCTGGTTTGTGGGTATCTGGAGAATTTCTCAGTCTATGGGTTAAGGATACTGGTAATGATACAATTGAAATATGGGTGATGAAAGAATACAAAGTGCATTCGTCTTGGACTAAGACTCTTATTCTTCCTCAGCATGTCATTCCTGGTCACTACTTTAACCCTCTGTACTATTATTCCAGATTTGTGGACTACTTTCACCCTATGTATTCTACAGAAAATGGTGATATTATTGGAAAATATGGTGGTATTAAATTGGTGAAGTATAATGACAAAGGACAGGTTTTAGGGCATCACTCCTTCTGCAACAGTCCTTCCGAAGTTGTCGTGTATACAGAGTCTCTACTTTCACTCTCTGGTGACAATTAG

Protein sequence

>MS.gene50336.t1

MDLPQELIIQILLRLQVKSLIFFKCICKLWFSIISDPHFANSHFQLNFAKHTRRFLCISALSPEIRSMDFDAFLNDAPASPNFNCSLPDSYFPLEIKGSCRGFIFLYCHRNIYIWNPSTGSKRQILMSAFNTKAYINLYGFGYDQSRDDYVVVLLSNKVNPFLVGVPQSHLEFFSFRDNIWKEIEGNHLPYGDDYREGEGVVFNGAIHWLSSRRDLVLDVIVDFDLTERKLFEMPVPNDVDHRALVHSGLWVSGEFLSLWVKDTGNDTIEIWVMKEYKVHSSWTKTLILPQHVIPGHYFNPLYYYSRFVDYFHPMYSTENGDIIGKYGGIKLVKYNDKGQVLGHHSFCNSPSEVVVYTESLLSLSGDN